Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001080 | XP_013453212.1 | 97.273 | 220 | 6 | 0 | 1 | 220 | 1 | 220 | 3.63e-150 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001080 | sp|O82197|VP321_ARATH | 81.982 | 222 | 29 | 5 | 1 | 220 | 1 | 213 | 2.11e-109 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001080 | I3SEH2 | 97.273 | 220 | 6 | 0 | 1 | 220 | 1 | 220 | 1.73e-150 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008840 | Msa1001080 | 0.800039 | 1.737119e-48 | -8.615850e-47 |
| Msa0015460 | Msa1001080 | 0.809546 | 1.794138e-50 | -8.615850e-47 |
| Msa0017320 | Msa1001080 | 0.800810 | 1.210103e-48 | -8.615850e-47 |
| Msa0042550 | Msa1001080 | 0.823561 | 1.296178e-53 | -8.615850e-47 |
| Msa0043730 | Msa1001080 | 0.833710 | 4.560754e-56 | -8.615850e-47 |
| Msa0055150 | Msa1001080 | 0.801862 | 7.369064e-49 | -8.615850e-47 |
| Msa0061970 | Msa1001080 | 0.809093 | 2.243764e-50 | -8.615850e-47 |
| Msa0064700 | Msa1001080 | 0.803970 | 2.702918e-49 | -8.615850e-47 |
| Msa0065650 | Msa1001080 | 0.824862 | 6.412828e-54 | -8.615850e-47 |
| Msa0101020 | Msa1001080 | 0.801234 | 9.914065e-49 | -8.615850e-47 |
| Msa0101880 | Msa1001080 | 0.815794 | 7.700498e-52 | -8.615850e-47 |
| Msa0109590 | Msa1001080 | 0.805460 | 1.320688e-49 | -8.615850e-47 |
| Msa0603670 | Msa1001080 | 0.807923 | 3.986792e-50 | -8.615850e-47 |
| Msa0609220 | Msa1001080 | 0.803433 | 3.494681e-49 | -8.615850e-47 |
| Msa0619920 | Msa1001080 | 0.815534 | 8.802410e-52 | -8.615850e-47 |
| Msa0620330 | Msa1001080 | 0.829240 | 5.749108e-55 | -8.615850e-47 |
| Msa0620620 | Msa1001080 | 0.822258 | 2.608254e-53 | -8.615850e-47 |
| Msa0626850 | Msa1001080 | 0.832376 | 9.791194e-56 | -8.615850e-47 |
| Msa0629650 | Msa1001080 | 0.847746 | 9.517823e-60 | -8.615850e-47 |
| Msa0654620 | Msa1001080 | 0.805060 | 1.601786e-49 | -8.615850e-47 |
| Msa0661710 | Msa1001080 | 0.805937 | 1.048971e-49 | -8.615850e-47 |
| Msa0664970 | Msa1001080 | 0.826728 | 2.313767e-54 | -8.615850e-47 |
| Msa0679550 | Msa1001080 | 0.823053 | 1.704044e-53 | -8.615850e-47 |
| Msa0688390 | Msa1001080 | 0.820648 | 6.137391e-53 | -8.615850e-47 |
| Msa0693790 | Msa1001080 | 0.806418 | 8.307352e-50 | -8.615850e-47 |
| Msa0705600 | Msa1001080 | 0.802609 | 5.173092e-49 | -8.615850e-47 |
| Msa0706390 | Msa1001080 | 0.814452 | 1.529858e-51 | -8.615850e-47 |
| Msa0715410 | Msa1001080 | 0.816792 | 4.607575e-52 | -8.615850e-47 |
| Msa0721340 | Msa1001080 | 0.805166 | 1.522181e-49 | -8.615850e-47 |
| Msa0736570 | Msa1001080 | 0.800680 | 1.286693e-48 | -8.615850e-47 |
| Msa0741070 | Msa1001080 | 0.821226 | 4.517932e-53 | -8.615850e-47 |
| Msa0745200 | Msa1001080 | 0.806775 | 6.981772e-50 | -8.615850e-47 |
| Msa0748070 | Msa1001080 | 0.808319 | 3.282708e-50 | -8.615850e-47 |
| Msa0790440 | Msa1001080 | -0.804061 | 2.587805e-49 | -8.615850e-47 |
| Msa0823500 | Msa1001080 | 0.814861 | 1.241693e-51 | -8.615850e-47 |
| Msa0826760 | Msa1001080 | 0.832768 | 7.828869e-56 | -8.615850e-47 |
| Msa0124550 | Msa1001080 | 0.820735 | 5.861575e-53 | -8.615850e-47 |
| Msa0130520 | Msa1001080 | 0.815841 | 7.518430e-52 | -8.615850e-47 |
| Msa0131450 | Msa1001080 | 0.807194 | 5.695191e-50 | -8.615850e-47 |
| Msa0145150 | Msa1001080 | 0.801012 | 1.100485e-48 | -8.615850e-47 |
| Msa0178510 | Msa1001080 | 0.830359 | 3.069555e-55 | -8.615850e-47 |
| Msa0182570 | Msa1001080 | 0.811709 | 6.113944e-51 | -8.615850e-47 |
| Msa0186310 | Msa1001080 | 0.817757 | 2.794966e-52 | -8.615850e-47 |
| Msa0200620 | Msa1001080 | 0.804032 | 2.624727e-49 | -8.615850e-47 |
| Msa0202930 | Msa1001080 | 0.847769 | 9.374508e-60 | -8.615850e-47 |
| Msa0208810 | Msa1001080 | 0.829567 | 4.790370e-55 | -8.615850e-47 |
| Msa0215590 | Msa1001080 | 0.837349 | 5.478963e-57 | -8.615850e-47 |
| Msa0229360 | Msa1001080 | 0.822852 | 1.897339e-53 | -8.615850e-47 |
| Msa0236070 | Msa1001080 | 0.805383 | 1.370593e-49 | -8.615850e-47 |
| Msa0385490 | Msa1001080 | 0.811163 | 8.030877e-51 | -8.615850e-47 |
| Msa0386040 | Msa1001080 | 0.816063 | 6.708975e-52 | -8.615850e-47 |
| Msa0388030 | Msa1001080 | -0.808874 | 2.499683e-50 | -8.615850e-47 |
| Msa0394470 | Msa1001080 | 0.815366 | 9.593010e-52 | -8.615850e-47 |
| Msa0417330 | Msa1001080 | 0.822813 | 1.937482e-53 | -8.615850e-47 |
| Msa0439890 | Msa1001080 | 0.845308 | 4.402657e-59 | -8.615850e-47 |
| Msa0445280 | Msa1001080 | 0.800236 | 1.584725e-48 | -8.615850e-47 |
| Msa0459700 | Msa1001080 | 0.800210 | 1.604038e-48 | -8.615850e-47 |
| Msa0468320 | Msa1001080 | 0.835253 | 1.868686e-56 | -8.615850e-47 |
| Msa0482180 | Msa1001080 | 0.814386 | 1.581730e-51 | -8.615850e-47 |
| Msa0994390 | Msa1001080 | 0.844414 | 7.671999e-59 | -8.615850e-47 |
| Msa1001080 | Msa1021510 | 0.814240 | 1.703788e-51 | -8.615850e-47 |
| Msa1001080 | Msa1025080 | 0.807023 | 6.189165e-50 | -8.615850e-47 |
| Msa1001080 | Msa1026940 | 0.817080 | 3.968977e-52 | -8.615850e-47 |
| Msa1001080 | Msa1028590 | 0.801865 | 7.361160e-49 | -8.615850e-47 |
| Msa1001080 | Msa1033970 | 0.804496 | 2.100561e-49 | -8.615850e-47 |
| Msa1001080 | Msa1036900 | 0.822458 | 2.343426e-53 | -8.615850e-47 |
| Msa1001080 | Msa1064250 | 0.813930 | 1.994271e-51 | -8.615850e-47 |
| Msa1001080 | Msa1071320 | 0.811694 | 6.160403e-51 | -8.615850e-47 |
| Msa1001080 | Msa1103660 | -0.808050 | 3.746733e-50 | -8.615850e-47 |
| Msa1001080 | Msa1105500 | 0.817953 | 2.523560e-52 | -8.615850e-47 |
| Msa1001080 | Msa1115240 | 0.817095 | 3.938058e-52 | -8.615850e-47 |
| Msa1001080 | Msa1115280 | 0.817714 | 2.857460e-52 | -8.615850e-47 |
| Msa1001080 | Msa1118760 | 0.807673 | 4.505347e-50 | -8.615850e-47 |
| Msa1001080 | Msa1119090 | 0.818321 | 2.083682e-52 | -8.615850e-47 |
| Msa1001080 | Msa1119190 | 0.818660 | 1.745960e-52 | -8.615850e-47 |
| Msa1001080 | Msa1127190 | 0.818095 | 2.343396e-52 | -8.615850e-47 |
| Msa1001080 | Msa1127830 | 0.817617 | 3.005452e-52 | -8.615850e-47 |
| Msa1001080 | Msa1164010 | 0.808851 | 2.527750e-50 | -8.615850e-47 |
| Msa1001080 | Msa1177780 | 0.804929 | 1.706062e-49 | -8.615850e-47 |
| Msa1001080 | Msa1190970 | 0.803293 | 3.735658e-49 | -8.615850e-47 |
| Msa1001080 | Msa1197070 | 0.810947 | 8.945574e-51 | -8.615850e-47 |
| Msa1001080 | Msa1203880 | 0.805735 | 1.156401e-49 | -8.615850e-47 |
| Msa1001080 | Msa1207310 | 0.821536 | 3.832103e-53 | -8.615850e-47 |
| Msa1001080 | Msa1207350 | 0.823103 | 1.658856e-53 | -8.615850e-47 |
| Msa1001080 | Msa1218580 | 0.807095 | 5.975322e-50 | -8.615850e-47 |
| Msa1001080 | Msa1225100 | 0.819466 | 1.144391e-52 | -8.615850e-47 |
| Msa1001080 | Msa1246700 | 0.801500 | 8.745391e-49 | -8.615850e-47 |
| Msa1001080 | Msa1253810 | 0.817188 | 3.752962e-52 | -8.615850e-47 |
| Msa1001080 | Msa1276340 | 0.813060 | 3.098703e-51 | -8.615850e-47 |
| Msa1001080 | Msa1286550 | 0.840053 | 1.096221e-57 | -8.615850e-47 |
| Msa1001080 | Msa1295330 | 0.805676 | 1.189976e-49 | -8.615850e-47 |
| Msa1001080 | Msa1306560 | 0.828257 | 9.942716e-55 | -8.615850e-47 |
| Msa1001080 | Msa1314770 | 0.812050 | 5.152244e-51 | -8.615850e-47 |
| Msa1001080 | Msa1329870 | 0.818745 | 1.669977e-52 | -8.615850e-47 |
| Msa1001080 | Msa1331280 | 0.815488 | 9.008902e-52 | -8.615850e-47 |
| Msa1001080 | Msa1331350 | 0.826160 | 3.159913e-54 | -8.615850e-47 |
| Msa1001080 | Msa1339190 | 0.812883 | 3.387849e-51 | -8.615850e-47 |
| Msa1001080 | Msa1340830 | 0.818898 | 1.541630e-52 | -8.615850e-47 |
| Msa1001080 | Msa1355890 | 0.821186 | 4.616178e-53 | -8.615850e-47 |
| Msa1001080 | Msa1372150 | 0.825448 | 4.662824e-54 | -8.615850e-47 |
| Msa1001080 | Msa1375380 | 0.813599 | 2.359045e-51 | -8.615850e-47 |
| Msa1001080 | Msa1376130 | 0.805296 | 1.429889e-49 | -8.615850e-47 |
| Msa1001080 | Msa1377570 | 0.802317 | 5.941755e-49 | -8.615850e-47 |
| Msa1001080 | Msa1380400 | 0.816250 | 6.091471e-52 | -8.615850e-47 |
| Msa1001080 | Msa1382790 | 0.833732 | 4.504912e-56 | -8.615850e-47 |
| Msa1001080 | Msa1405220 | 0.824594 | 7.417592e-54 | -8.615850e-47 |
| Msa1001080 | Msa1418280 | 0.829000 | 6.575401e-55 | -8.615850e-47 |
| Msa1001080 | Msa1435400 | 0.805925 | 1.054743e-49 | -8.615850e-47 |
| Msa1001080 | Msa1436600 | 0.811454 | 6.945527e-51 | -8.615850e-47 |
| Msa1001080 | Msa1450550 | -0.801355 | 9.364853e-49 | -8.615850e-47 |
| Msa0239800 | Msa1001080 | 0.801302 | 9.601785e-49 | -8.615850e-47 |
| Msa0255850 | Msa1001080 | 0.814663 | 1.373495e-51 | -8.615850e-47 |
| Msa0257500 | Msa1001080 | 0.814331 | 1.626976e-51 | -8.615850e-47 |
| Msa0265380 | Msa1001080 | 0.818515 | 1.883152e-52 | -8.615850e-47 |
| Msa0270170 | Msa1001080 | -0.832844 | 7.497731e-56 | -8.615850e-47 |
| Msa0284450 | Msa1001080 | 0.826189 | 3.110170e-54 | -8.615850e-47 |
| Msa0288730 | Msa1001080 | 0.813594 | 2.365074e-51 | -8.615850e-47 |
| Msa0303360 | Msa1001080 | 0.815569 | 8.644709e-52 | -8.615850e-47 |
| Msa0305890 | Msa1001080 | 0.801418 | 9.090821e-49 | -8.615850e-47 |
| Msa0307310 | Msa1001080 | 0.815283 | 1.000813e-51 | -8.615850e-47 |
| Msa0307560 | Msa1001080 | 0.807251 | 5.537446e-50 | -8.615850e-47 |
| Msa0317510 | Msa1001080 | 0.801052 | 1.079939e-48 | -8.615850e-47 |
| Msa0320430 | Msa1001080 | 0.803302 | 3.719988e-49 | -8.615850e-47 |
| Msa0320610 | Msa1001080 | 0.805272 | 1.446488e-49 | -8.615850e-47 |
| Msa0322680 | Msa1001080 | 0.824956 | 6.094991e-54 | -8.615850e-47 |
| Msa0333650 | Msa1001080 | 0.836399 | 9.573572e-57 | -8.615850e-47 |
| Msa0344870 | Msa1001080 | 0.801987 | 6.946978e-49 | -8.615850e-47 |
| Msa0347750 | Msa1001080 | 0.821530 | 3.844960e-53 | -8.615850e-47 |
| Msa0349700 | Msa1001080 | 0.812001 | 5.279286e-51 | -8.615850e-47 |
| Msa0485490 | Msa1001080 | 0.825898 | 3.646994e-54 | -8.615850e-47 |
| Msa0489610 | Msa1001080 | 0.804568 | 2.029895e-49 | -8.615850e-47 |
| Msa0518440 | Msa1001080 | 0.820860 | 5.487108e-53 | -8.615850e-47 |
| Msa0527910 | Msa1001080 | 0.806641 | 7.454670e-50 | -8.615850e-47 |
| Msa0532540 | Msa1001080 | 0.836745 | 7.813663e-57 | -8.615850e-47 |
| Msa0541040 | Msa1001080 | 0.815129 | 1.082655e-51 | -8.615850e-47 |
| Msa0546570 | Msa1001080 | 0.801410 | 9.123282e-49 | -8.615850e-47 |
| Msa0587030 | Msa1001080 | 0.831700 | 1.438699e-55 | -8.615850e-47 |
| Msa0587190 | Msa1001080 | 0.805519 | 1.283965e-49 | -8.615850e-47 |
| Msa0589390 | Msa1001080 | 0.846083 | 2.713653e-59 | -8.615850e-47 |
| Msa0597000 | Msa1001080 | 0.844057 | 9.565776e-59 | -8.615850e-47 |
| Msa0602370 | Msa1001080 | 0.804384 | 2.217226e-49 | -8.615850e-47 |
| Msa0861470 | Msa1001080 | 0.819600 | 1.066418e-52 | -8.615850e-47 |
| Msa0861570 | Msa1001080 | 0.812871 | 3.408427e-51 | -8.615850e-47 |
| Msa0862500 | Msa1001080 | 0.812695 | 3.725282e-51 | -8.615850e-47 |
| Msa0877710 | Msa1001080 | 0.817172 | 3.784527e-52 | -8.615850e-47 |
| Msa0880810 | Msa1001080 | 0.806860 | 6.701672e-50 | -8.615850e-47 |
| Msa0888990 | Msa1001080 | 0.804420 | 2.178401e-49 | -8.615850e-47 |
| Msa0895310 | Msa1001080 | 0.822104 | 2.831317e-53 | -8.615850e-47 |
| Msa0901320 | Msa1001080 | 0.866810 | 2.171579e-65 | -8.615850e-47 |
| Msa0925870 | Msa1001080 | 0.829315 | 5.515265e-55 | -8.615850e-47 |
| Msa0932100 | Msa1001080 | 0.806625 | 7.510804e-50 | -8.615850e-47 |
| Msa0932190 | Msa1001080 | 0.800780 | 1.227248e-48 | -8.615850e-47 |
| Msa0941540 | Msa1001080 | 0.802245 | 6.148924e-49 | -8.615850e-47 |
| Msa0943270 | Msa1001080 | 0.810352 | 1.203268e-50 | -8.615850e-47 |
| Msa0960240 | Msa1001080 | 0.811436 | 7.008558e-51 | -8.615850e-47 |
| Msa0966630 | Msa1001080 | 0.920615 | 1.022221e-87 | -8.615850e-47 |
| Msa0970230 | Msa1001080 | 0.806024 | 1.005556e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001080 | MtrunA17_Chr6g0487521 | 97.273 | 220 | 6 | 0 | 1 | 220 | 1 | 220 | 3.34e-154 | 426 |
| Msa1001080 | MtrunA17_Chr8g0389481 | 83.182 | 220 | 35 | 2 | 1 | 220 | 5 | 222 | 2.53e-109 | 313 |
| Msa1001080 | MtrunA17_Chr8g0389471 | 76.818 | 220 | 48 | 2 | 1 | 220 | 5 | 221 | 8.19e-96 | 278 |
| Msa1001080 | MtrunA17_Chr1g0197041 | 29.577 | 213 | 127 | 6 | 4 | 194 | 3 | 214 | 6.83e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001080 | AT2G19830.2 | 81.982 | 222 | 29 | 5 | 1 | 220 | 1 | 213 | 2.15e-110 | 315 |
| Msa1001080 | AT4G29160.1 | 85.068 | 221 | 30 | 2 | 1 | 220 | 1 | 219 | 4.68e-110 | 315 |
| Msa1001080 | AT4G29160.3 | 85.068 | 221 | 30 | 2 | 1 | 220 | 1 | 219 | 4.68e-110 | 315 |
| Msa1001080 | AT2G19830.1 | 82.828 | 198 | 26 | 3 | 24 | 220 | 4 | 194 | 1.42e-98 | 285 |
| Msa1001080 | AT4G29160.2 | 86.667 | 180 | 23 | 1 | 42 | 220 | 13 | 192 | 6.89e-96 | 278 |
| Msa1001080 | AT5G04850.1 | 29.143 | 175 | 111 | 3 | 4 | 169 | 3 | 173 | 4.42e-13 | 66.6 |
| Msa1001080 | AT3G10640.1 | 29.778 | 225 | 113 | 7 | 4 | 194 | 3 | 216 | 8.83e-13 | 65.9 |
| Msa1001080 | AT5G04850.2 | 28.313 | 166 | 106 | 3 | 4 | 160 | 3 | 164 | 8.57e-11 | 60.5 |
Find 74 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGCATATGTTGATTTAT+AGG | 0.212646 | 6_4:+84573196 | Msa1001080:three_prime_UTR |
| ATTTGTAGACCACAAATATT+TGG | 0.219995 | 6_4:-84573337 | None:intergenic |
| TATTTAACTCAAAATGATTT+AGG | 0.228374 | 6_4:-84573281 | None:intergenic |
| TCCTCAGGAGTCGGCTTTGC+AGG | 0.229972 | 6_4:-84572635 | None:intergenic |
| AGATGAATTGGCAGCTTTGC+AGG | 0.277136 | 6_4:+84572658 | Msa1001080:CDS |
| ACTAGAAATGCTCGAGAAAA+AGG | 0.286111 | 6_4:+84571318 | Msa1001080:CDS |
| TTGAATCTGCTTCATGTTCT+CGG | 0.295683 | 6_4:-84571949 | None:intergenic |
| GGAAAATGTACTCCTTAAAA+AGG | 0.296574 | 6_4:+84571339 | Msa1001080:CDS |
| CCATAAGCATTACTTCATAT+TGG | 0.307978 | 6_4:+84573368 | Msa1001080:three_prime_UTR |
| CACCAAAAGAAAGAACAAAA+AGG | 0.308755 | 6_4:+84571393 | Msa1001080:CDS |
| CCAATATGAAGTAATGCTTA+TGG | 0.332702 | 6_4:-84573368 | None:intergenic |
| GGAAGCAGAACTTGAAGAAT+TGG | 0.342673 | 6_4:+84572514 | Msa1001080:CDS |
| TTGCTGGATGTGTCTTGTTT+AGG | 0.352010 | 6_4:-84568044 | None:intergenic |
| CGTGCAGGTTGCCTCCCAGC+TGG | 0.353565 | 6_4:-84572605 | None:intergenic |
| CCCACAGTGCACGTCCCAGC+TGG | 0.353629 | 6_4:+84572590 | Msa1001080:CDS |
| CTCGTTTAATTTGTCTAAAG+TGG | 0.361888 | 6_4:-84568075 | None:intergenic |
| AGAAAGATTAGATTAGAAGT+TGG | 0.364338 | 6_4:-84567905 | None:intergenic |
| GAAAGATTAGATTAGAAGTT+GGG | 0.373204 | 6_4:-84567904 | None:intergenic |
| TAAAGTGGCAAGAGCATTGC+TGG | 0.395234 | 6_4:-84568060 | None:intergenic |
| GGAGTCGGCTTTGCAGGAAC+AGG | 0.397015 | 6_4:-84572629 | None:intergenic |
| GACTCCTGAGGAAGATGAAT+TGG | 0.412289 | 6_4:+84572646 | Msa1001080:CDS |
| GTTGAAGAAGATGGATGTTT+GGG | 0.418399 | 6_4:-84567829 | None:intergenic |
| TGTTGAAGAAGATGGATGTT+TGG | 0.429329 | 6_4:-84567830 | None:intergenic |
| TGGGATCTGGCGATCTGGAT+TGG | 0.438202 | 6_4:-84567885 | None:intergenic |
| AGAAGATGGATGTTTGGGTT+AGG | 0.439603 | 6_4:-84567824 | None:intergenic |
| GAAGTTGGGATCTGGCGATC+TGG | 0.442572 | 6_4:-84567890 | None:intergenic |
| GGAGCAGGAGCTGTAGTTGC+TGG | 0.442696 | 6_4:-84572569 | None:intergenic |
| ACGGTAGATGCGTTAAGAAC+AGG | 0.446956 | 6_4:+84571709 | Msa1001080:CDS |
| TGGTGAAAATTGAATCGGTT+TGG | 0.452483 | 6_4:-84567936 | None:intergenic |
| CCAGTTGCGTATTCATGACC+AGG | 0.454482 | 6_4:+84571560 | Msa1001080:CDS |
| GGGATCTGGCGATCTGGATT+GGG | 0.454946 | 6_4:-84567884 | None:intergenic |
| TTGTTCTTTACAGGACGAAC+TGG | 0.460844 | 6_4:+84572493 | Msa1001080:intron |
| GTTGTTGGTGAAAATTGAAT+CGG | 0.462258 | 6_4:-84567941 | None:intergenic |
| GCAGATTCAAGAAGCATTGT+CGG | 0.464581 | 6_4:+84571962 | Msa1001080:CDS |
| CGCATCTACCGTTTCTGTGG+TGG | 0.466031 | 6_4:-84571698 | None:intergenic |
| AGAATTGGAGAGTGCTGAGT+TGG | 0.466125 | 6_4:+84572529 | Msa1001080:CDS |
| AAATCAGCAGCAGCACCAAT+TGG | 0.472619 | 6_4:-84571987 | None:intergenic |
| TTCAATGTTTGAAGAGGAAG+AGG | 0.475427 | 6_4:+84571502 | Msa1001080:CDS |
| CCAGCTGGGACGTGCACTGT+GGG | 0.476274 | 6_4:-84572590 | None:intergenic |
| GGGACGTGCACTGTGGGAGC+AGG | 0.480823 | 6_4:-84572584 | None:intergenic |
| CCTGGTCATGAATACGCAAC+TGG | 0.481018 | 6_4:-84571560 | None:intergenic |
| GAAGCATTGTCGGCTCCAAT+TGG | 0.484568 | 6_4:+84571972 | Msa1001080:CDS |
| TTAGATTAGAAGTTGGGATC+TGG | 0.486486 | 6_4:-84567898 | None:intergenic |
| CCAGGTTTGCGTATCGAACA+TGG | 0.486892 | 6_4:+84573140 | Msa1001080:intron |
| GGCAGCTTTGCAGGCTGAGA+TGG | 0.492052 | 6_4:+84572667 | Msa1001080:CDS |
| TTTGCAGGAACAGGGCGTGC+AGG | 0.497715 | 6_4:-84572620 | None:intergenic |
| CTTCAACATCATATCATCAT+CGG | 0.516597 | 6_4:+84567845 | Msa1001080:five_prime_UTR |
| TGCTAAAGCCACCACAGAAA+CGG | 0.517537 | 6_4:+84571690 | Msa1001080:CDS |
| TGATATGATGTTGAAGAAGA+TGG | 0.523258 | 6_4:-84567838 | None:intergenic |
| GTGCAGGTTGCCTCCCAGCT+GGG | 0.526011 | 6_4:-84572604 | None:intergenic |
| GCTGCCAATTCATCTTCCTC+AGG | 0.526016 | 6_4:-84572650 | None:intergenic |
| CTGCAATTCAATGTTTGAAG+AGG | 0.528685 | 6_4:+84571496 | Msa1001080:CDS |
| ACAGCAATACCAAATATTTG+TGG | 0.530701 | 6_4:+84573328 | Msa1001080:three_prime_UTR |
| CTGCTCATTTATCTCGTCCA+TGG | 0.531919 | 6_4:-84571925 | None:intergenic |
| GCTGAGATGGCACTTTGAGC+GGG | 0.538605 | 6_4:+84572680 | Msa1001080:exon |
| TAATAGATGATAATGTTAGA+AGG | 0.546431 | 6_4:+84571667 | Msa1001080:intron |
| AATTCATCTTCCTCAGGAGT+CGG | 0.548839 | 6_4:-84572644 | None:intergenic |
| GGCTGAGATGGCACTTTGAG+CGG | 0.549673 | 6_4:+84572679 | Msa1001080:exon |
| CCACAGTGCACGTCCCAGCT+GGG | 0.553286 | 6_4:+84572591 | Msa1001080:CDS |
| TAACGCATCTACCGTTTCTG+TGG | 0.566279 | 6_4:-84571701 | None:intergenic |
| AACAGGAGCAGCTACTATGA+AGG | 0.577122 | 6_4:+84571726 | Msa1001080:CDS |
| TGGGTTAGGACAAGATTCCA+AGG | 0.579839 | 6_4:-84567810 | None:intergenic |
| ACAAATATTTGGTATTGCTG+TGG | 0.583068 | 6_4:-84573326 | None:intergenic |
| CCCAGCTGGGACGTGCACTG+TGG | 0.592771 | 6_4:-84572591 | None:intergenic |
| GAACAACAAGTTGAGCAGCT+TGG | 0.596454 | 6_4:+84571531 | Msa1001080:CDS |
| GAGTCGGCTTTGCAGGAACA+GGG | 0.596697 | 6_4:-84572628 | None:intergenic |
| TCCTGCAAAGCCGACTCCTG+AGG | 0.597589 | 6_4:+84572634 | Msa1001080:CDS |
| AAAAGATTGACGAAGATCGA+AGG | 0.598936 | 6_4:-84567785 | None:intergenic |
| TGATGACGTCGACAAGACCA+TGG | 0.612646 | 6_4:+84571908 | Msa1001080:CDS |
| CACTTTAGACAAATTAAACG+AGG | 0.618854 | 6_4:+84568076 | Msa1001080:CDS |
| TCTGGCGATCTGGATTGGGT+AGG | 0.635725 | 6_4:-84567880 | None:intergenic |
| CAGTGCACGTCCCAGCTGGG+AGG | 0.680562 | 6_4:+84572594 | Msa1001080:CDS |
| ATGTAATAATGCGTGCCACG+TGG | 0.684759 | 6_4:+84567738 | Msa1001080:five_prime_UTR |
| TTTGACTATCTGATACTGTG+TGG | 0.701834 | 6_4:+84573168 | Msa1001080:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAATATTTTTTTTTGTT+TGG | - | chr6_4:84567970-84567989 | None:intergenic | 10.0% |
| !! | TTAATGAAAAATAAAAAAAG+GGG | - | chr6_4:84568165-84568184 | None:intergenic | 10.0% |
| !!! | ATGAAGATAAATTTTTTTTT+TGG | + | chr6_4:84568497-84568516 | Msa1001080:intron | 10.0% |
| !! | AACATTTAAATTTAATATGT+CGG | - | chr6_4:84568663-84568682 | None:intergenic | 10.0% |
| !! | ATTTCTATAACAAAAAATTA+AGG | + | chr6_4:84568772-84568791 | Msa1001080:intron | 10.0% |
| !!! | TTGAAGAATAATTTTATTTT+TGG | + | chr6_4:84569312-84569331 | Msa1001080:intron | 10.0% |
| !!! | TGAAGAATAATTTTATTTTT+GGG | + | chr6_4:84569313-84569332 | Msa1001080:intron | 10.0% |
| !! | TAATGAAAAATAAAAAAAGG+GGG | - | chr6_4:84568164-84568183 | None:intergenic | 15.0% |
| !!! | CTCATAGATTATAATTTTAA+AGG | + | chr6_4:84568689-84568708 | Msa1001080:intron | 15.0% |
| !! | ATAGTCATAAACAAATTAAA+TGG | - | chr6_4:84569078-84569097 | None:intergenic | 15.0% |
| !! | AAAATTATTCTTCAATTGAT+AGG | - | chr6_4:84569307-84569326 | None:intergenic | 15.0% |
| !!! | GAAGAATAATTTTATTTTTG+GGG | + | chr6_4:84569314-84569333 | Msa1001080:intron | 15.0% |
| !! | TACAAATTAACAAATTCAAT+CGG | - | chr6_4:84569554-84569573 | None:intergenic | 15.0% |
| !!! | TGTTTAAGTTATTTGTATAA+CGG | + | chr6_4:84569916-84569935 | Msa1001080:intron | 15.0% |
| !! | TTAATTTATACATAAACACT+TGG | - | chr6_4:84570102-84570121 | None:intergenic | 15.0% |
| !! | AATTAATCATTTGTTTGAAT+TGG | - | chr6_4:84570287-84570306 | None:intergenic | 15.0% |
| !! | TGAATTAAGAAAAAGTTTAA+GGG | - | chr6_4:84571093-84571112 | None:intergenic | 15.0% |
| !! | ATGATTTATTTAATTGAGTT+TGG | + | chr6_4:84571861-84571880 | Msa1001080:intron | 15.0% |
| !! | AAATGCTTATTTATTTATGT+TGG | + | chr6_4:84572028-84572047 | Msa1001080:intron | 15.0% |
| !!! | TCATTTTCTTAAAATATGAT+TGG | - | chr6_4:84572350-84572369 | None:intergenic | 15.0% |
| !!! | ATATTGTAATTTGTAACTAA+TGG | + | chr6_4:84572946-84572965 | Msa1001080:intron | 15.0% |
| !!! | TATCAAAAGATAACTTTTTA+AGG | - | chr6_4:84573234-84573253 | None:intergenic | 15.0% |
| !! | TATTTAACTCAAAATGATTT+AGG | - | chr6_4:84573284-84573303 | None:intergenic | 15.0% |
| !! | AACAAAACCTTATATGATAA+AGG | - | chr6_4:84568360-84568379 | None:intergenic | 20.0% |
| !!! | TTATCATATAAGGTTTTGTT+TGG | + | chr6_4:84568360-84568379 | Msa1001080:intron | 20.0% |
| !!! | AAGCTTTTATTTGTTATTCA+TGG | + | chr6_4:84568442-84568461 | Msa1001080:intron | 20.0% |
| !!! | AGCTTTTATTTGTTATTCAT+GGG | + | chr6_4:84568443-84568462 | Msa1001080:intron | 20.0% |
| !! | TTGTTATAGAAATTAAATGC+AGG | - | chr6_4:84568765-84568784 | None:intergenic | 20.0% |
| !! | TTGCTTTAATTAACATTTCA+TGG | - | chr6_4:84568902-84568921 | None:intergenic | 20.0% |
| !! | ATTTAGTAAACACTCAATTA+TGG | - | chr6_4:84568997-84569016 | None:intergenic | 20.0% |
| !!! | ATTTTCCAATGTAAACTAAT+AGG | + | chr6_4:84569030-84569049 | Msa1001080:intron | 20.0% |
| !!! | AATAACCTATTAGTTTACAT+TGG | - | chr6_4:84569038-84569057 | None:intergenic | 20.0% |
| !!! | TTATATTGGTTTGATACTTA+CGG | - | chr6_4:84569152-84569171 | None:intergenic | 20.0% |
| !! | AAATATTACTACATGATTGA+TGG | - | chr6_4:84569193-84569212 | None:intergenic | 20.0% |
| !! | TAGCTCAATGTTTATTATTT+AGG | + | chr6_4:84569260-84569279 | Msa1001080:intron | 20.0% |
| !! | AGCTCAATGTTTATTATTTA+GGG | + | chr6_4:84569261-84569280 | Msa1001080:intron | 20.0% |
| !! | AACTTATGAACAATAGATAA+AGG | - | chr6_4:84569381-84569400 | None:intergenic | 20.0% |
| !! | GACTTATGAATTAACATAAA+AGG | + | chr6_4:84569441-84569460 | Msa1001080:intron | 20.0% |
| !! | AAAAAAAAAAATGATCACGA+AGG | - | chr6_4:84569661-84569680 | None:intergenic | 20.0% |
| !!! | AAGTTGTTTTTATCTAAACA+GGG | - | chr6_4:84569883-84569902 | None:intergenic | 20.0% |
| !!! | TAAGTTGTTTTTATCTAAAC+AGG | - | chr6_4:84569884-84569903 | None:intergenic | 20.0% |
| !!! | GTTTAAGTTATTTGTATAAC+GGG | + | chr6_4:84569917-84569936 | Msa1001080:intron | 20.0% |
| !! | TATGACATGTTTATCATATA+AGG | + | chr6_4:84570544-84570563 | Msa1001080:intron | 20.0% |
| !!! | AATAAGTTGAAAACAACATT+TGG | + | chr6_4:84570870-84570889 | Msa1001080:intron | 20.0% |
| !! | GTGAATTAAGAAAAAGTTTA+AGG | - | chr6_4:84571094-84571113 | None:intergenic | 20.0% |
| !! | TTTCTTAATTCACACAATTA+CGG | + | chr6_4:84571101-84571120 | Msa1001080:intron | 20.0% |
| !! | ATCAATTTATGAGCATATAT+TGG | + | chr6_4:84571155-84571174 | Msa1001080:intron | 20.0% |
| !!! | TTTAGTATTAGTTTAGACAA+TGG | + | chr6_4:84571599-84571618 | Msa1001080:intron | 20.0% |
| !!! | TAATAGATGATAATGTTAGA+AGG | + | chr6_4:84571667-84571686 | Msa1001080:intron | 20.0% |
| !! | TTGATTACGTAAAAAAAATG+AGG | - | chr6_4:84572195-84572214 | None:intergenic | 20.0% |
| !!! | CTTTTCACTTAATTTTGTTT+TGG | + | chr6_4:84572240-84572259 | Msa1001080:intron | 20.0% |
| !! | TATAAATAACACAAATCTGT+CGG | - | chr6_4:84572726-84572745 | None:intergenic | 20.0% |
| !!! | ACAACAATCTAAAATAATTC+TGG | - | chr6_4:84572842-84572861 | None:intergenic | 20.0% |
| !!! | TTTTAGATTGTTGTTCTATT+TGG | + | chr6_4:84572848-84572867 | Msa1001080:intron | 20.0% |
| !!! | AAAGATAACTTTTTAAGGTA+CGG | - | chr6_4:84573229-84573248 | None:intergenic | 20.0% |
| !!! | GAAAAATTAAGTTTTCTGAT+TGG | - | chr6_4:84573400-84573419 | None:intergenic | 20.0% |
| ! | GAAAGATTAGATTAGAAGTT+GGG | - | chr6_4:84567907-84567926 | None:intergenic | 25.0% |
| ! | AGAAAGATTAGATTAGAAGT+TGG | - | chr6_4:84567908-84567927 | None:intergenic | 25.0% |
| ! | GCATAATCCTTTATCATATA+AGG | + | chr6_4:84568350-84568369 | Msa1001080:intron | 25.0% |
| ! | CACTCAATTATGGATAAAAT+TGG | - | chr6_4:84568987-84569006 | None:intergenic | 25.0% |
| ! | GATAGGTATGTATTTATATC+CGG | - | chr6_4:84569290-84569309 | None:intergenic | 25.0% |
| ! | TGTATCTTCATAAACTAACT+TGG | - | chr6_4:84569406-84569425 | None:intergenic | 25.0% |
| !! | AAAGGTAAACTGTTTTCAAA+AGG | + | chr6_4:84569459-84569478 | Msa1001080:intron | 25.0% |
| !!! | ATAATTGGATCTGTTTTTTG+CGG | - | chr6_4:84569620-84569639 | None:intergenic | 25.0% |
| ! | TAACCTATTAAAGAGAACTA+CGG | - | chr6_4:84569752-84569771 | None:intergenic | 25.0% |
| ! | TCTCTTTAATAGGTTATGTT+TGG | + | chr6_4:84569756-84569775 | Msa1001080:intron | 25.0% |
| !! | AATAGGTTATGTTTGGAATT+TGG | + | chr6_4:84569763-84569782 | Msa1001080:intron | 25.0% |
| ! | TAAAGTCAAACTGTTTCATA+AGG | + | chr6_4:84569948-84569967 | Msa1001080:intron | 25.0% |
| ! | TTTCTATAAGCTCTTACAAA+TGG | + | chr6_4:84570035-84570054 | Msa1001080:intron | 25.0% |
| ! | GTACATAGTTTATGTGTAAA+CGG | - | chr6_4:84570131-84570150 | None:intergenic | 25.0% |
| !!! | TAATACTTCTAGGATTGTTT+GGG | - | chr6_4:84570239-84570258 | None:intergenic | 25.0% |
| !!! | TTAATACTTCTAGGATTGTT+TGG | - | chr6_4:84570240-84570259 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGATACTGTT+TGG | + | chr6_4:84570500-84570519 | Msa1001080:intron | 25.0% |
| !!! | TAAGTTTTGTGATACTGTTT+GGG | + | chr6_4:84570501-84570520 | Msa1001080:intron | 25.0% |
| !!! | TTATCATATAAGGTACTGTT+TGG | + | chr6_4:84570554-84570573 | Msa1001080:intron | 25.0% |
| !!! | TATCATATAAGGTACTGTTT+GGG | + | chr6_4:84570555-84570574 | Msa1001080:intron | 25.0% |
| !! | CTCTTGTTATAGAAATAACT+TGG | - | chr6_4:84570591-84570610 | None:intergenic | 25.0% |
| ! | AGTGTCTGTATAATTTCAAA+GGG | - | chr6_4:84571301-84571320 | None:intergenic | 25.0% |
| ! | TAGTGTCTGTATAATTTCAA+AGG | - | chr6_4:84571302-84571321 | None:intergenic | 25.0% |
| ! | ACCAAAAGAAAGAACAAAAA+GGG | + | chr6_4:84571394-84571413 | Msa1001080:CDS | 25.0% |
| ! | TTCTAATTTCACTTAATCCA+TGG | + | chr6_4:84571444-84571463 | Msa1001080:intron | 25.0% |
| !!! | TAATCTTATTTTGCCTCTTA+TGG | + | chr6_4:84571632-84571651 | Msa1001080:intron | 25.0% |
| !! | GTTTGATTATTTGTACCTTT+TGG | + | chr6_4:84572064-84572083 | Msa1001080:intron | 25.0% |
| ! | TTCAGACAGATTAAGAAAAA+TGG | + | chr6_4:84572165-84572184 | Msa1001080:intron | 25.0% |
| ! | AATAAATTCAGAATGCTACA+CGG | - | chr6_4:84572475-84572494 | None:intergenic | 25.0% |
| ! | CTGAATTTATTGTTCTTTAC+AGG | + | chr6_4:84572484-84572503 | Msa1001080:intron | 25.0% |
| ! | GACATCAACATATCATTTAA+CGG | - | chr6_4:84572794-84572813 | None:intergenic | 25.0% |
| ! | ATTATTGAACTGATTGTGAT+TGG | + | chr6_4:84573019-84573038 | Msa1001080:intron | 25.0% |
| !!! | TCAAGCATATGTTGATTTAT+AGG | + | chr6_4:84573196-84573215 | Msa1001080:three_prime_UTR | 25.0% |
| ! | ATTTGTAGACCACAAATATT+TGG | - | chr6_4:84573340-84573359 | None:intergenic | 25.0% |
| TGATATGATGTTGAAGAAGA+TGG | - | chr6_4:84567841-84567860 | None:intergenic | 30.0% | |
| CTTCAACATCATATCATCAT+CGG | + | chr6_4:84567845-84567864 | Msa1001080:five_prime_UTR | 30.0% | |
| ! | GTTGTTGGTGAAAATTGAAT+CGG | - | chr6_4:84567944-84567963 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTTGGATCGTTGT+TGG | - | chr6_4:84567959-84567978 | None:intergenic | 30.0% |
| ! | ATCATGTTTACGAGAGTTTT+CGG | + | chr6_4:84568017-84568036 | Msa1001080:exon | 30.0% |
| !! | CTCGTTTAATTTGTCTAAAG+TGG | - | chr6_4:84568078-84568097 | None:intergenic | 30.0% |
| CACTTTAGACAAATTAAACG+AGG | + | chr6_4:84568076-84568095 | Msa1001080:CDS | 30.0% | |
| CAAGTTTATCCAAACAAACA+TGG | - | chr6_4:84568316-84568335 | None:intergenic | 30.0% | |
| TTTGTTTGGATAAACAGCTA+AGG | + | chr6_4:84568374-84568393 | Msa1001080:intron | 30.0% | |
| TTGTTTGGATAAACAGCTAA+GGG | + | chr6_4:84568375-84568394 | Msa1001080:intron | 30.0% | |
| TTTCATAAGCTCAATCCAAA+CGG | + | chr6_4:84568569-84568588 | Msa1001080:intron | 30.0% | |
| ! | TGGTGATTTTTGTCTTGTAT+TGG | - | chr6_4:84568882-84568901 | None:intergenic | 30.0% |
| TAAAAGTTGACGATAGCTAT+TGG | + | chr6_4:84568932-84568951 | Msa1001080:intron | 30.0% | |
| ! | TGTTTATTATTTAGGGTAGC+CGG | + | chr6_4:84569268-84569287 | Msa1001080:intron | 30.0% |
| ATGAACAATAGATAAAGGCA+GGG | - | chr6_4:84569376-84569395 | None:intergenic | 30.0% | |
| TATGAACAATAGATAAAGGC+AGG | - | chr6_4:84569377-84569396 | None:intergenic | 30.0% | |
| ! | AGATACAATTTTCGTTAGTG+AGG | + | chr6_4:84569419-84569438 | Msa1001080:intron | 30.0% |
| ! | AAGGTATCATGTAGAGTTTA+TGG | + | chr6_4:84569478-84569497 | Msa1001080:intron | 30.0% |
| ATCATGTAGAGTTTATGGAA+AGG | + | chr6_4:84569483-84569502 | Msa1001080:intron | 30.0% | |
| TCCAATTATTGCAATCCATT+CGG | + | chr6_4:84569631-84569650 | Msa1001080:intron | 30.0% | |
| TTTCCGTAGTTCTCTTTAAT+AGG | + | chr6_4:84569746-84569765 | Msa1001080:intron | 30.0% | |
| TTAGACGATAAGCTCAAATA+AGG | + | chr6_4:84570063-84570082 | Msa1001080:intron | 30.0% | |
| CTACTGCAATTAATACTTCT+AGG | - | chr6_4:84570249-84570268 | None:intergenic | 30.0% | |
| ATAGAAACAGGAATTAGAGT+TGG | - | chr6_4:84570348-84570367 | None:intergenic | 30.0% | |
| CATAGGTGAAATATAGAAAC+AGG | - | chr6_4:84570360-84570379 | None:intergenic | 30.0% | |
| TCTCTCAAATAGGTTCTATT+TGG | + | chr6_4:84570449-84570468 | Msa1001080:intron | 30.0% | |
| ! | AATGTGCTGGAAATAGTTTT+TGG | + | chr6_4:84570661-84570680 | Msa1001080:intron | 30.0% |
| AAGCTATCATAGAAAGCTTA+TGG | + | chr6_4:84570846-84570865 | Msa1001080:intron | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr6_4:84570976-84570995 | Msa1001080:intron | 30.0% | |
| TCAAACAAGACAATCCAAAT+AGG | + | chr6_4:84571067-84571086 | Msa1001080:intron | 30.0% | |
| AAAAAGTTTAAGGGCCTATT+TGG | - | chr6_4:84571084-84571103 | None:intergenic | 30.0% | |
| ACGAATAGATAAACAGTTCA+AGG | - | chr6_4:84571218-84571237 | None:intergenic | 30.0% | |
| GGAAAATGTACTCCTTAAAA+AGG | + | chr6_4:84571339-84571358 | Msa1001080:CDS | 30.0% | |
| !! | CTTTCTTTTGGTGTATTCTT+TGG | - | chr6_4:84571386-84571405 | None:intergenic | 30.0% |
| CACCAAAAGAAAGAACAAAA+AGG | + | chr6_4:84571393-84571412 | Msa1001080:CDS | 30.0% | |
| ! | ACCCTTTTTGTTCTTTCTTT+TGG | - | chr6_4:84571398-84571417 | None:intergenic | 30.0% |
| CTACTCTGGACTTAAAATAT+AGG | - | chr6_4:84572296-84572315 | None:intergenic | 30.0% | |
| TTTGTAGATAAGTACTACTC+TGG | - | chr6_4:84572310-84572329 | None:intergenic | 30.0% | |
| ATCTACAAAACACAATTGCA+TGG | + | chr6_4:84572321-84572340 | Msa1001080:intron | 30.0% | |
| TTGAATGTAACCACATGTAT+CGG | + | chr6_4:84572375-84572394 | Msa1001080:intron | 30.0% | |
| ! | ATGTGTTCAATCTGAAATGT+TGG | + | chr6_4:84572425-84572444 | Msa1001080:intron | 30.0% |
| ! | GAATTCTGTTTCTCTTATTC+TGG | + | chr6_4:84572981-84573000 | Msa1001080:intron | 30.0% |
| ACAAATATTTGGTATTGCTG+TGG | - | chr6_4:84573329-84573348 | None:intergenic | 30.0% | |
| ACAGCAATACCAAATATTTG+TGG | + | chr6_4:84573328-84573347 | Msa1001080:three_prime_UTR | 30.0% | |
| CCAATATGAAGTAATGCTTA+TGG | - | chr6_4:84573371-84573390 | None:intergenic | 30.0% | |
| CCATAAGCATTACTTCATAT+TGG | + | chr6_4:84573368-84573387 | Msa1001080:three_prime_UTR | 30.0% | |
| AAAAGATTGACGAAGATCGA+AGG | - | chr6_4:84567788-84567807 | None:intergenic | 35.0% | |
| ! | CTTCGTCAATCTTTTTACCT+TGG | + | chr6_4:84567793-84567812 | Msa1001080:five_prime_UTR | 35.0% |
| GTTGAAGAAGATGGATGTTT+GGG | - | chr6_4:84567832-84567851 | None:intergenic | 35.0% | |
| TGTTGAAGAAGATGGATGTT+TGG | - | chr6_4:84567833-84567852 | None:intergenic | 35.0% | |
| TTAGATTAGAAGTTGGGATC+TGG | - | chr6_4:84567901-84567920 | None:intergenic | 35.0% | |
| TGGTGAAAATTGAATCGGTT+TGG | - | chr6_4:84567939-84567958 | None:intergenic | 35.0% | |
| GCAATTACTCCATGTTTGTT+TGG | + | chr6_4:84568304-84568323 | Msa1001080:intron | 35.0% | |
| TTGCATAAGCCAATCAAAAC+AGG | - | chr6_4:84568401-84568420 | None:intergenic | 35.0% | |
| !! | TGTTATTCATGGGCTTGTTA+AGG | + | chr6_4:84568453-84568472 | Msa1001080:intron | 35.0% |
| TTCATAAGCTCAATCCAAAC+GGG | + | chr6_4:84568570-84568589 | Msa1001080:intron | 35.0% | |
| AGCTAGCAAAAAGTTTATGC+AGG | + | chr6_4:84568611-84568630 | Msa1001080:intron | 35.0% | |
| GCTAGCAAAAAGTTTATGCA+GGG | + | chr6_4:84568612-84568631 | Msa1001080:intron | 35.0% | |
| CTAGCAAAAAGTTTATGCAG+GGG | + | chr6_4:84568613-84568632 | Msa1001080:intron | 35.0% | |
| ACGATAGCTATTGGAAAAGT+TGG | + | chr6_4:84568941-84568960 | Msa1001080:intron | 35.0% | |
| ! | TTTCGACAACTGAACTTGTT+TGG | + | chr6_4:84569235-84569254 | Msa1001080:intron | 35.0% |
| ! | TTCGACAACTGAACTTGTTT+GGG | + | chr6_4:84569236-84569255 | Msa1001080:intron | 35.0% |
| TGAACAATAGATAAAGGCAG+GGG | - | chr6_4:84569375-84569394 | None:intergenic | 35.0% | |
| CCAATTATTGCAATCCATTC+GGG | + | chr6_4:84569632-84569651 | Msa1001080:intron | 35.0% | |
| TGCATTTAGCAGTACTCTTA+TGG | + | chr6_4:84569684-84569703 | Msa1001080:intron | 35.0% | |
| ! | AAGGTATTCCGTAGATCTTA+TGG | + | chr6_4:84569967-84569986 | Msa1001080:intron | 35.0% |
| CCTCATTTCCATAAGATCTA+CGG | - | chr6_4:84569978-84569997 | None:intergenic | 35.0% | |
| GAGAGCTTATGAGAATAAGT+TGG | + | chr6_4:84570171-84570190 | Msa1001080:intron | 35.0% | |
| TTCCATAAGCTCTCTCAAAT+AGG | + | chr6_4:84570439-84570458 | Msa1001080:intron | 35.0% | |
| AACCTATTTGAGAGAGCTTA+TGG | - | chr6_4:84570444-84570463 | None:intergenic | 35.0% | |
| ! | TCTTGTTTGAGCTTATCTAC+TGG | - | chr6_4:84571057-84571076 | None:intergenic | 35.0% |
| ACTAGAAATGCTCGAGAAAA+AGG | + | chr6_4:84571318-84571337 | Msa1001080:CDS | 35.0% | |
| AAAACTCAAGTCACATTCCA+TGG | - | chr6_4:84571464-84571483 | None:intergenic | 35.0% | |
| CTGCAATTCAATGTTTGAAG+AGG | + | chr6_4:84571496-84571515 | Msa1001080:CDS | 35.0% | |
| TTCAATGTTTGAAGAGGAAG+AGG | + | chr6_4:84571502-84571521 | Msa1001080:CDS | 35.0% | |
| AATACAAATGCATTCACACC+TGG | - | chr6_4:84571581-84571600 | None:intergenic | 35.0% | |
| !!! | TCTTATTTTGCCTCTTATGG+TGG | + | chr6_4:84571635-84571654 | Msa1001080:intron | 35.0% |
| !! | TTGGTTCTGTTTCTTTCTAC+AGG | + | chr6_4:84571880-84571899 | Msa1001080:intron | 35.0% |
| TTGAATCTGCTTCATGTTCT+CGG | - | chr6_4:84571952-84571971 | None:intergenic | 35.0% | |
| !!! | TGTTCTATTTGGTTTTGCCA+CGG | + | chr6_4:84572859-84572878 | Msa1001080:intron | 35.0% |
| !!! | GAACGCTTTTTTTTTCTTCC+AGG | + | chr6_4:84573122-84573141 | Msa1001080:intron | 35.0% |
| TTTGACTATCTGATACTGTG+TGG | + | chr6_4:84573168-84573187 | Msa1001080:three_prime_UTR | 35.0% | |
| !!! | GTGCTACTTTTATTTCCACG+TGG | - | chr6_4:84567756-84567775 | None:intergenic | 40.0% |
| ! | AGAAGATGGATGTTTGGGTT+AGG | - | chr6_4:84567827-84567846 | None:intergenic | 40.0% |
| !! | TTGCTGGATGTGTCTTGTTT+AGG | - | chr6_4:84568047-84568066 | None:intergenic | 40.0% |
| TCATAAGCTCAATCCAAACG+GGG | + | chr6_4:84568571-84568590 | Msa1001080:intron | 40.0% | |
| ! | TCGACAACTGAACTTGTTTG+GGG | + | chr6_4:84569237-84569256 | Msa1001080:intron | 40.0% |
| TGCGGAAATCATGTGTGATT+GGG | - | chr6_4:84569602-84569621 | None:intergenic | 40.0% | |
| TTGCGGAAATCATGTGTGAT+TGG | - | chr6_4:84569603-84569622 | None:intergenic | 40.0% | |
| !! | CCCGAATGGATTGCAATAAT+TGG | - | chr6_4:84569635-84569654 | None:intergenic | 40.0% |
| CCGTAGATCTTATGGAAATG+AGG | + | chr6_4:84569975-84569994 | Msa1001080:intron | 40.0% | |
| GCGCAATTGCAAATAGTTGA+GGG | + | chr6_4:84569997-84570016 | Msa1001080:intron | 40.0% | |
| TCAAATAAGGCGATCCAAAC+AGG | + | chr6_4:84570076-84570095 | Msa1001080:intron | 40.0% | |
| ACATAAACACTTGGCCTGTT+TGG | - | chr6_4:84570093-84570112 | None:intergenic | 40.0% | |
| CATTGACAATCACAGCTCAT+AGG | - | chr6_4:84570377-84570396 | None:intergenic | 40.0% | |
| GAGCTTATGGAAACAGCTTA+TGG | - | chr6_4:84570431-84570450 | None:intergenic | 40.0% | |
| CACATTTCCATAAGCTCTCT+GGG | - | chr6_4:84570647-84570666 | None:intergenic | 40.0% | |
| AGACTGTTTGCAAGAGCTTA+TGG | - | chr6_4:84570705-84570724 | None:intergenic | 40.0% | |
| TCAATGAAGTCAATCCAAGC+AGG | + | chr6_4:84570740-84570759 | Msa1001080:intron | 40.0% | |
| ACATAAACACTTGACCTGCT+TGG | - | chr6_4:84570757-84570776 | None:intergenic | 40.0% | |
| ATGCTATCGTAGAGAGCTTA+TGG | + | chr6_4:84570952-84570971 | Msa1001080:intron | 40.0% | |
| TGCTATCGTAGAGAGCTTAT+GGG | + | chr6_4:84570953-84570972 | Msa1001080:intron | 40.0% | |
| ACAGATTGAGATTGAGAGAG+TGG | + | chr6_4:84571253-84571272 | Msa1001080:intron | 40.0% | |
| ! | TATTTTGCCTCTTATGGTGG+TGG | + | chr6_4:84571638-84571657 | Msa1001080:intron | 40.0% |
| !! | GCAGATTCAAGAAGCATTGT+CGG | + | chr6_4:84571962-84571981 | Msa1001080:CDS | 40.0% |
| CAGCACTATACACAACCAAA+AGG | - | chr6_4:84572082-84572101 | None:intergenic | 40.0% | |
| AGTGCTGTACAATACTCTCT+CGG | + | chr6_4:84572095-84572114 | Msa1001080:intron | 40.0% | |
| !! | CTGAAATGTTGGTGCTACAT+TGG | + | chr6_4:84572436-84572455 | Msa1001080:intron | 40.0% |
| TTGTTCTTTACAGGACGAAC+TGG | + | chr6_4:84572493-84572512 | Msa1001080:intron | 40.0% | |
| GGAAGCAGAACTTGAAGAAT+TGG | + | chr6_4:84572514-84572533 | Msa1001080:CDS | 40.0% | |
| AATTCATCTTCCTCAGGAGT+CGG | - | chr6_4:84572647-84572666 | None:intergenic | 40.0% | |
| TAACAAAGCCAGCGAAATTC+TGG | - | chr6_4:84572899-84572918 | None:intergenic | 40.0% | |
| GTGAAATACACTTATCGTCG+CGG | - | chr6_4:84572923-84572942 | None:intergenic | 40.0% | |
| TGTAACTAATGGCTGTGATG+TGG | + | chr6_4:84572957-84572976 | Msa1001080:intron | 40.0% | |
| AAAAGCAGCAAGAGTTGAAG+GGG | - | chr6_4:84573087-84573106 | None:intergenic | 40.0% | |
| GAAAAGCAGCAAGAGTTGAA+GGG | - | chr6_4:84573088-84573107 | None:intergenic | 40.0% | |
| AGAAAAGCAGCAAGAGTTGA+AGG | - | chr6_4:84573089-84573108 | None:intergenic | 40.0% | |
| ATGTAATAATGCGTGCCACG+TGG | + | chr6_4:84567738-84567757 | Msa1001080:five_prime_UTR | 45.0% | |
| ! | TGGGTTAGGACAAGATTCCA+AGG | - | chr6_4:84567813-84567832 | None:intergenic | 45.0% |
| !! | TAAAGTGGCAAGAGCATTGC+TGG | - | chr6_4:84568063-84568082 | None:intergenic | 45.0% |
| !!! | AGCTAAGGGCCTGTTTTGAT+TGG | + | chr6_4:84568389-84568408 | Msa1001080:intron | 45.0% |
| TCATATAGGAGGGGTAGCTT+TGG | - | chr6_4:84569343-84569362 | None:intergenic | 45.0% | |
| AGCTACCCCTCCTATATGAA+AGG | + | chr6_4:84569344-84569363 | Msa1001080:intron | 45.0% | |
| CGGTTCCTTTCATATAGGAG+GGG | - | chr6_4:84569352-84569371 | None:intergenic | 45.0% | |
| GCGGTTCCTTTCATATAGGA+GGG | - | chr6_4:84569353-84569372 | None:intergenic | 45.0% | |
| ACAATAGATAAAGGCAGGGG+CGG | - | chr6_4:84569372-84569391 | None:intergenic | 45.0% | |
| AATCGGTCGTGATACATTCG+CGG | - | chr6_4:84569537-84569556 | None:intergenic | 45.0% | |
| GGCGCAATTGCAAATAGTTG+AGG | + | chr6_4:84569996-84570015 | Msa1001080:intron | 45.0% | |
| AAGCTATCCCAGAGAGCTTA+TGG | + | chr6_4:84570637-84570656 | Msa1001080:intron | 45.0% | |
| GCACATTTCCATAAGCTCTC+TGG | - | chr6_4:84570648-84570667 | None:intergenic | 45.0% | |
| GAGAGCTTATGGAAATGTGC+TGG | + | chr6_4:84570648-84570667 | Msa1001080:intron | 45.0% | |
| !!! | GGCTTTTTCAACTTCTGCTG+CGG | - | chr6_4:84571365-84571384 | None:intergenic | 45.0% |
| ! | GAACAACAAGTTGAGCAGCT+TGG | + | chr6_4:84571531-84571550 | Msa1001080:CDS | 45.0% |
| ACACAAACCACCACCATAAG+AGG | - | chr6_4:84571648-84571667 | None:intergenic | 45.0% | |
| TGCTAAAGCCACCACAGAAA+CGG | + | chr6_4:84571690-84571709 | Msa1001080:CDS | 45.0% | |
| TAACGCATCTACCGTTTCTG+TGG | - | chr6_4:84571704-84571723 | None:intergenic | 45.0% | |
| ACGGTAGATGCGTTAAGAAC+AGG | + | chr6_4:84571709-84571728 | Msa1001080:CDS | 45.0% | |
| AACAGGAGCAGCTACTATGA+AGG | + | chr6_4:84571726-84571745 | Msa1001080:CDS | 45.0% | |
| CTGCTCATTTATCTCGTCCA+TGG | - | chr6_4:84571928-84571947 | None:intergenic | 45.0% | |
| AAATCAGCAGCAGCACCAAT+TGG | - | chr6_4:84571990-84572009 | None:intergenic | 45.0% | |
| GTGCTGTACAATACTCTCTC+GGG | + | chr6_4:84572096-84572115 | Msa1001080:intron | 45.0% | |
| !! | CAATACAGTGCCGATACATG+TGG | - | chr6_4:84572388-84572407 | None:intergenic | 45.0% |
| !! | AGAATTGGAGAGTGCTGAGT+TGG | + | chr6_4:84572529-84572548 | Msa1001080:CDS | 45.0% |
| GACTCCTGAGGAAGATGAAT+TGG | + | chr6_4:84572646-84572665 | Msa1001080:CDS | 45.0% | |
| AGATGAATTGGCAGCTTTGC+AGG | + | chr6_4:84572658-84572677 | Msa1001080:CDS | 45.0% | |
| ! | ACACAAATCTGTCGGTTGTG+TGG | - | chr6_4:84572718-84572737 | None:intergenic | 45.0% |
| AGCTTAAGCCAGAATTTCGC+TGG | + | chr6_4:84572888-84572907 | Msa1001080:intron | 45.0% | |
| !! | ATTAATGAAAAATAAAAAAA+GGG | - | chr6_4:84568166-84568185 | None:intergenic | 5.0% |
| !! | AATTAATGAAAAATAAAAAA+AGG | - | chr6_4:84568167-84568186 | None:intergenic | 5.0% |
| !! | TTTAAAAAAAAAATTATAGT+TGG | - | chr6_4:84568639-84568658 | None:intergenic | 5.0% |
| !! | ATTTATAGATTTATTTATAT+TGG | - | chr6_4:84569166-84569185 | None:intergenic | 5.0% |
| CAAACGGGGCCTTTATGCAA+CGG | + | chr6_4:84568585-84568604 | Msa1001080:intron | 50.0% | |
| CTAGCTTCGCCGTTGCATAA+AGG | - | chr6_4:84568597-84568616 | None:intergenic | 50.0% | |
| GGCGGTTCCTTTCATATAGG+AGG | - | chr6_4:84569354-84569373 | None:intergenic | 50.0% | |
| AGGGGCGGTTCCTTTCATAT+AGG | - | chr6_4:84569357-84569376 | None:intergenic | 50.0% | |
| AAGCACTCGTGAGGCTGTTT+GGG | - | chr6_4:84571031-84571050 | None:intergenic | 50.0% | |
| TAAGCACTCGTGAGGCTGTT+TGG | - | chr6_4:84571032-84571051 | None:intergenic | 50.0% | |
| TACTGGCATAAGCACTCGTG+AGG | - | chr6_4:84571040-84571059 | None:intergenic | 50.0% | |
| ! | CTTCTGCTGCGGCCTTTTTA+AGG | - | chr6_4:84571354-84571373 | None:intergenic | 50.0% |
| CCTGGTCATGAATACGCAAC+TGG | - | chr6_4:84571563-84571582 | None:intergenic | 50.0% | |
| CCAGTTGCGTATTCATGACC+AGG | + | chr6_4:84571560-84571579 | Msa1001080:CDS | 50.0% | |
| ! | TGATGACGTCGACAAGACCA+TGG | + | chr6_4:84571908-84571927 | Msa1001080:CDS | 50.0% |
| !! | GAAGCATTGTCGGCTCCAAT+TGG | + | chr6_4:84571972-84571991 | Msa1001080:CDS | 50.0% |
| !!! | TGCTGCTGCTGATTTTGACG+AGG | + | chr6_4:84571995-84572014 | Msa1001080:CDS | 50.0% |
| ATCGGCACTGTATTGCGTGT+CGG | + | chr6_4:84572393-84572412 | Msa1001080:intron | 50.0% | |
| ACTGTATTGCGTGTCGGACT+CGG | + | chr6_4:84572399-84572418 | Msa1001080:intron | 50.0% | |
| GCTGCCAATTCATCTTCCTC+AGG | - | chr6_4:84572653-84572672 | None:intergenic | 50.0% | |
| CCATGTTCGATACGCAAACC+TGG | - | chr6_4:84573143-84573162 | None:intergenic | 50.0% | |
| CCAGGTTTGCGTATCGAACA+TGG | + | chr6_4:84573140-84573159 | Msa1001080:intron | 50.0% | |
| ! | TCTGGCGATCTGGATTGGGT+AGG | - | chr6_4:84567883-84567902 | None:intergenic | 55.0% |
| GGGATCTGGCGATCTGGATT+GGG | - | chr6_4:84567887-84567906 | None:intergenic | 55.0% | |
| TGGGATCTGGCGATCTGGAT+TGG | - | chr6_4:84567888-84567907 | None:intergenic | 55.0% | |
| GAAGTTGGGATCTGGCGATC+TGG | - | chr6_4:84567893-84567912 | None:intergenic | 55.0% | |
| CGTTGCATAAAGGCCCCGTT+TGG | - | chr6_4:84568587-84568606 | None:intergenic | 55.0% | |
| !! | GATCACGAAGGTGTCCCGAA+TGG | - | chr6_4:84569649-84569668 | None:intergenic | 55.0% |
| CGCATCTACCGTTTCTGTGG+TGG | - | chr6_4:84571701-84571720 | None:intergenic | 55.0% | |
| ! | GAGTCGGCTTTGCAGGAACA+GGG | - | chr6_4:84572631-84572650 | None:intergenic | 55.0% |
| TGGCTTAAGCTAAGCAGCCG+TGG | - | chr6_4:84572879-84572898 | None:intergenic | 55.0% | |
| GGAGCAGGAGCTGTAGTTGC+TGG | - | chr6_4:84572572-84572591 | None:intergenic | 60.0% | |
| TTTGCAGGAACAGGGCGTGC+AGG | - | chr6_4:84572623-84572642 | None:intergenic | 60.0% | |
| ! | GGAGTCGGCTTTGCAGGAAC+AGG | - | chr6_4:84572632-84572651 | None:intergenic | 60.0% |
| ! | TCCTGCAAAGCCGACTCCTG+AGG | + | chr6_4:84572634-84572653 | Msa1001080:CDS | 60.0% |
| ! | TCCTCAGGAGTCGGCTTTGC+AGG | - | chr6_4:84572638-84572657 | None:intergenic | 60.0% |
| GGCAGCTTTGCAGGCTGAGA+TGG | + | chr6_4:84572667-84572686 | Msa1001080:CDS | 60.0% | |
| CCAGCTGGGACGTGCACTGT+GGG | - | chr6_4:84572593-84572612 | None:intergenic | 65.0% | |
| CCACAGTGCACGTCCCAGCT+GGG | + | chr6_4:84572591-84572610 | Msa1001080:CDS | 65.0% | |
| GTGCAGGTTGCCTCCCAGCT+GGG | - | chr6_4:84572607-84572626 | None:intergenic | 65.0% | |
| GGGACGTGCACTGTGGGAGC+AGG | - | chr6_4:84572587-84572606 | None:intergenic | 70.0% | |
| CCCACAGTGCACGTCCCAGC+TGG | + | chr6_4:84572590-84572609 | Msa1001080:CDS | 70.0% | |
| CCCAGCTGGGACGTGCACTG+TGG | - | chr6_4:84572594-84572613 | None:intergenic | 70.0% | |
| CAGTGCACGTCCCAGCTGGG+AGG | + | chr6_4:84572594-84572613 | Msa1001080:CDS | 70.0% | |
| CGTGCAGGTTGCCTCCCAGC+TGG | - | chr6_4:84572608-84572627 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 84567700 | 84573427 | 84567700 | ID=Msa1001080;Name=Msa1001080 |
| chr6_4 | mRNA | 84567700 | 84573427 | 84567700 | ID=Msa1001080-mRNA-1;Parent=Msa1001080;Name=Msa1001080-mRNA-1;_AED=0.15;_eAED=0.15;_QI=320|1|1|1|0.66|0.57|7|288|220 |
| chr6_4 | exon | 84567700 | 84568097 | 84567700 | ID=Msa1001080-mRNA-1:exon:16515;Parent=Msa1001080-mRNA-1 |
| chr6_4 | exon | 84571316 | 84571415 | 84571316 | ID=Msa1001080-mRNA-1:exon:16516;Parent=Msa1001080-mRNA-1 |
| chr6_4 | exon | 84571496 | 84571581 | 84571496 | ID=Msa1001080-mRNA-1:exon:16517;Parent=Msa1001080-mRNA-1 |
| chr6_4 | exon | 84571673 | 84571764 | 84571673 | ID=Msa1001080-mRNA-1:exon:16518;Parent=Msa1001080-mRNA-1 |
| chr6_4 | exon | 84571902 | 84572016 | 84571902 | ID=Msa1001080-mRNA-1:exon:16519;Parent=Msa1001080-mRNA-1 |
| chr6_4 | exon | 84572506 | 84572701 | 84572506 | ID=Msa1001080-mRNA-1:exon:16520;Parent=Msa1001080-mRNA-1 |
| chr6_4 | exon | 84573144 | 84573427 | 84573144 | ID=Msa1001080-mRNA-1:exon:16521;Parent=Msa1001080-mRNA-1 |
| chr6_4 | five_prime_UTR | 84567700 | 84568019 | 84567700 | ID=Msa1001080-mRNA-1:five_prime_utr;Parent=Msa1001080-mRNA-1 |
| chr6_4 | CDS | 84568020 | 84568097 | 84568020 | ID=Msa1001080-mRNA-1:cds;Parent=Msa1001080-mRNA-1 |
| chr6_4 | CDS | 84571316 | 84571415 | 84571316 | ID=Msa1001080-mRNA-1:cds;Parent=Msa1001080-mRNA-1 |
| chr6_4 | CDS | 84571496 | 84571581 | 84571496 | ID=Msa1001080-mRNA-1:cds;Parent=Msa1001080-mRNA-1 |
| chr6_4 | CDS | 84571673 | 84571764 | 84571673 | ID=Msa1001080-mRNA-1:cds;Parent=Msa1001080-mRNA-1 |
| chr6_4 | CDS | 84571902 | 84572016 | 84571902 | ID=Msa1001080-mRNA-1:cds;Parent=Msa1001080-mRNA-1 |
| chr6_4 | CDS | 84572506 | 84572697 | 84572506 | ID=Msa1001080-mRNA-1:cds;Parent=Msa1001080-mRNA-1 |
| chr6_4 | three_prime_UTR | 84572698 | 84572701 | 84572698 | ID=Msa1001080-mRNA-1:three_prime_utr;Parent=Msa1001080-mRNA-1 |
| chr6_4 | three_prime_UTR | 84573144 | 84573427 | 84573144 | ID=Msa1001080-mRNA-1:three_prime_utr;Parent=Msa1001080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
