AlfalfaGEDB | Msa1407650

M. sativa cultivar zhongmu-4 / Msa1407650

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF12796.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407650	XP_003630941.1	98.704	540	5	1	1	540	1	538	0.0	1094

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407650	sp\|Q9ZU96\|Y2168_ARATH	69.316	541	156	5	1	540	1	532	0.0	743

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407650	G7LAK9	98.704	540	5	1	1	540	1	538	0.0	1094

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003300	Msa1407650	0.812753	3.618088e-51	-8.615850e-47
Msa0003560	Msa1407650	0.814639	1.390355e-51	-8.615850e-47
Msa0004790	Msa1407650	-0.806812	6.858791e-50	-8.615850e-47
Msa0029850	Msa1407650	0.849918	2.374906e-60	-8.615850e-47
Msa0038020	Msa1407650	0.811173	7.990578e-51	-8.615850e-47
Msa0076700	Msa1407650	0.832852	7.460012e-56	-8.615850e-47
Msa0077180	Msa1407650	0.843984	1.001260e-58	-8.615850e-47
Msa0077450	Msa1407650	0.817152	3.824216e-52	-8.615850e-47
Msa0085720	Msa1407650	0.868478	6.339524e-66	-8.615850e-47
Msa0092440	Msa1407650	0.817797	2.737038e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407650	MtrunA17_Chr8g0391711	98.704	540	5	1	1	540	1	538	0.0	1094
Msa1407650	MtrunA17_Chr1g0161231	77.079	541	113	4	1	540	1	531	0.0	862
Msa1407650	MtrunA17_Chr4g0030551	46.341	451	228	5	56	496	61	507	2.02e-130	391
Msa1407650	MtrunA17_Chr2g0327711	41.055	531	280	7	20	540	37	544	1.41e-128	386
Msa1407650	MtrunA17_Chr7g0276681	44.286	490	253	8	56	540	72	546	3.36e-127	382
Msa1407650	MtrunA17_Chr1g0212971	41.714	525	286	6	21	540	84	593	1.89e-125	380
Msa1407650	MtrunA17_Chr7g0263421	43.636	495	259	5	54	540	38	520	5.73e-125	376
Msa1407650	MtrunA17_Chr7g0263471	38.286	525	298	7	21	540	79	582	4.04e-103	322
Msa1407650	MtrunA17_Chr2g0331191	24.943	441	256	9	100	470	138	573	1.06e-34	138
Msa1407650	MtrunA17_Chr2g0331201	23.570	437	261	7	100	468	138	569	2.68e-24	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407650	AT2G01680.1	69.316	541	156	5	1	540	1	532	0.0	743
Msa1407650	AT1G07710.2	44.841	504	260	8	47	540	48	543	2.97e-128	385
Msa1407650	AT1G07710.1	44.841	504	260	8	47	540	48	543	2.97e-128	385
Msa1407650	AT2G31820.1	45.030	493	257	7	54	540	178	662	3.03e-124	379
Msa1407650	AT5G60070.1	42.412	514	264	8	14	515	36	529	6.78e-122	369
Msa1407650	AT1G05640.1	44.848	495	256	8	54	540	142	627	4.96e-120	367
Msa1407650	AT3G12360.2	40.230	522	294	6	21	540	73	578	3.21e-116	356
Msa1407650	AT3G12360.1	40.230	522	294	6	21	540	85	590	7.76e-116	355
Msa1407650	AT5G02620.4	42.324	482	249	5	24	492	27	492	3.63e-115	351
Msa1407650	AT5G02620.1	42.324	482	249	5	24	492	27	492	3.63e-115	351

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Find 131 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCGCCGACGAGTTTC+CGG	0.220434	tig0023317:+79003	Msa1407650:CDS
AACATCATCTTCATCTATGT+CGG	0.533622	tig0023317:+76967	Msa1407650:CDS
AACCACTGTGACAGAGTTAA+TGG	0.309857	tig0023317:-79073	None:intergenic
AAGATCTATGCTTTGTAAGC+TGG	0.491359	tig0023317:+79612	Msa1407650:exon
AAGATGGTGATAGAAGTAAT+GGG	0.566107	tig0023317:+76939	Msa1407650:CDS
AAGCACGTCTCTTGTACATG+GGG	0.679778	tig0023317:-80095	None:intergenic
AAGCTTAATAAGGAAGAAGA+TGG	0.476184	tig0023317:+76923	Msa1407650:CDS
ACAGAGTACATCAGTGGTGG+AGG	0.543153	tig0023317:+78010	Msa1407650:CDS
ACAGTTTCTTCAACCCATCA+AGG	0.495729	tig0023317:-76895	None:intergenic
ACATGGCTACGCGGAAAGGC+CGG	0.534860	tig0023317:+78096	Msa1407650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGTTAGAGAAGCTTAATA+AGG	+	tig0023317:76913-76932	Msa1407650:CDS	30.0%
AAGCTTAATAAGGAAGAAGA+TGG	+	tig0023317:76923-76942	Msa1407650:CDS	30.0%
AAGATGGTGATAGAAGTAAT+GGG	+	tig0023317:76939-76958	Msa1407650:CDS	30.0%
AACATCATCTTCATCTATGT+CGG	+	tig0023317:76967-76986	Msa1407650:CDS	30.0%
ATGTCTCTTCAAAATGATCA+TGG	+	tig0023317:77001-77020	Msa1407650:CDS	30.0%
GAATAAGTAGAATACCAAGA+TGG	-	tig0023317:77165-77184	None:intergenic	30.0%
TAATAGCAATATCCAAACAC+AGG	-	tig0023317:77241-77260	None:intergenic	30.0%
TATTATTGGATGAACTGTGT+TGG	+	tig0023317:77256-77275	Msa1407650:intron	30.0%
GTTTGGATAAAGATTGTTTC+AGG	+	tig0023317:77310-77329	Msa1407650:intron	30.0%
TTCAATTACACGAAGTTTCA+GGG	+	tig0023317:77394-77413	Msa1407650:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023317	gene	76580	80122	76580	ID=Msa1407650;Name=Msa1407650
tig0023317	mRNA	76580	80122	76580	ID=Msa1407650-mRNA-1;Parent=Msa1407650;Name=Msa1407650-mRNA-1;_AED=0.02;_eAED=0.02;_QI=250\|1\|1\|1\|1\|1\|3\|493\|540
tig0023317	exon	76580	77169	76580	ID=Msa1407650-mRNA-1:exon:25153;Parent=Msa1407650-mRNA-1
tig0023317	exon	77715	78124	77715	ID=Msa1407650-mRNA-1:exon:25154;Parent=Msa1407650-mRNA-1
tig0023317	exon	78757	80122	78757	ID=Msa1407650-mRNA-1:exon:25155;Parent=Msa1407650-mRNA-1
tig0023317	five_prime_UTR	76580	76829	76580	ID=Msa1407650-mRNA-1:five_prime_utr;Parent=Msa1407650-mRNA-1
tig0023317	CDS	76830	77169	76830	ID=Msa1407650-mRNA-1:cds;Parent=Msa1407650-mRNA-1
tig0023317	CDS	77715	78124	77715	ID=Msa1407650-mRNA-1:cds;Parent=Msa1407650-mRNA-1
tig0023317	CDS	78757	79629	78757	ID=Msa1407650-mRNA-1:cds;Parent=Msa1407650-mRNA-1
tig0023317	three_prime_UTR	79630	80122	79630	ID=Msa1407650-mRNA-1:three_prime_utr;Parent=Msa1407650-mRNA-1

Gene Sequence

>Msa1407650

ATGGAGTCGAAGGGTCTGCGTTTCATGACCCACCAATCAATATTCAACACGGTTGGATCTGGAGACCTTGATGGGTTGAAGAAACTGTTAGAGAAGCTTAATAAGGAAGAAGATGGTGATAGAAGTAATGGGTCATCAACATCATCTTCATCTATGTCGGTTTCTGATGTTATGTCTCTTCAAAATGATCATGGTGAAACACCACTTTACATAGCTGCACACAATAATCTCAAGGAAGTTTTCACCTTTTTGATCAAATTATGTGATTTTGAAGTTGTCAAGATTCGTTCTAAGTCTGATATGAACGCTTTTCATGTTGCAGCTAAGCGTGGCCATCTTGATATTGTGAGGGAGATTTTGTGTGCCTGGCCCGAGGTTTGTAAGTTGTGTGACTCGACAAACACCAGTCCCCTATATGCTGCCGCAGTCCAAGATCACTTGGATGTGGTAAATGCTATTTTGGATGTTGATGTCAGCTCCATGTTTATAGTTAGAAAAAATGGGAAAACTGCACTACATAATGCTGTTAGGTATGGCGTCGACCGTATTGTGAAAGCACTTATTGTCCGTGATCCAGGAATAGTTTGCATCAAAGATAAAAAAGGTCAAACTGCGCTACATATGGCTGTCAAAGGACAGAGTACATCAGTGGTGGAGGAGATATTACAAGCTGATCCTACTATATTGAACGAACGAGATAAGAAGGGTAATACCGCTCTTCACATGGCTACGCGGAAAGGCCGGTCACAGATAGTGAGCTATTTGCTAAGCTATGCAGCTGTGGATGTTAATGCCATCAACAAGCAACAAGAAACAGCCTTGGATTTAGCAGATAAACTGCCATATGGATCGTCAGCTTTAGAAATCCAAGAAGCACTTTCAGAATATGGTGCTAAATATGCAAGACATGTTGGTAAAGTAGATGAAGCCATGGAACTTAAAAGAACAGTGAGTGATATAAAGCATGAGGTGCAGTCACAGCTCATACAAAACGAAAAAACTCGCCGACGAGTTTCCGGTATAGCTAAGGAATTGAAAAAACTTCATAGAGAAGCTGTTCAAAACACCATTAACTCTGTCACAGTGGTTGCTGTCCTTTTCGCCTCAATAGCATTCTTGGCTATATTCAATTTGCCGGGTCAATATATTATGAAAGGATCACATATAGGAGAATCTAACATTGCGGATCATGTTGGATTTCAAATTTTCTGTCTCTTGAATTCGACGTCTCTTTTCATTTCTCTTGCAGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAAGCAGATCGTGTCTGTTGTTAACAAGCTAATGTGGGCTGCTTGTGCTTGCACGTGCGGCGCTTTTTTGGCAATCGCTTTTGAGGTTGTTGGAAAGAAAAAATGGATGGCTATTACCATAACTGGTTTAGGGATACCAATTCTAGTTGGGACTCTGGCAAGCATGTGCTACTTTGTTTTTCGACAACATTTTGGCATTTTCCAAAGTGATTCGCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCCTTCTCATGGTCTTACTCTGCAAATATATCAGATATAGACGAATACACTTCAGACATTGAGAAGATCTATGCTTTGTAA

Protein sequence

>Msa1407650

MESKGLRFMTHQSIFNTVGSGDLDGLKKLLEKLNKEEDGDRSNGSSTSSSSMSVSDVMSLQNDHGETPLYIAAHNNLKEVFTFLIKLCDFEVVKIRSKSDMNAFHVAAKRGHLDIVREILCAWPEVCKLCDSTNTSPLYAAAVQDHLDVVNAILDVDVSSMFIVRKNGKTALHNAVRYGVDRIVKALIVRDPGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPTILNERDKKGNTALHMATRKGRSQIVSYLLSYAAVDVNAINKQQETALDLADKLPYGSSALEIQEALSEYGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYIMKGSHIGESNIADHVGFQIFCLLNSTSLFISLAVVVVQITLVAWDTRAQKQIVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITGLGIPILVGTLASMCYFVFRQHFGIFQSDSQRRIKRASGSKSFSWSYSANISDIDEYTSDIEKIYAL*