AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0620330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620330 MtrunA17_Chr8g0386041 100.000 118 0 0 1 118 1 118 8.12e-84 240
Msa0620330 MtrunA17_Chr7g0224251 64.407 118 42 0 1 118 1 118 3.02e-57 173
Msa0620330 MtrunA17_Chr7g0224241 62.037 108 41 0 1 108 1 108 2.70e-48 157
Msa0620330 MtrunA17_Chr7g0268701 47.009 117 59 3 4 118 5 120 1.22e-34 115
Msa0620330 MtrunA17_Chr6g0454091 48.718 117 56 2 3 118 4 117 1.50e-33 113
Msa0620330 MtrunA17_Chr7g0218501 45.299 117 60 2 4 118 5 119 2.61e-31 107
Msa0620330 MtrunA17_Chr8g0386061 72.917 48 13 0 1 48 1 48 1.17e-20 79.0
Msa0620330 MtrunA17_Chr8g0386071 73.770 61 14 1 44 102 14 74 3.07e-20 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620330 AT4G24990.2 81.356 118 22 0 1 118 1 118 7.45e-71 207
Msa0620330 AT4G24990.1 81.356 118 22 0 1 118 1 118 7.45e-71 207
Msa0620330 AT3G26980.1 63.333 120 42 1 1 118 1 120 1.75e-53 164
Msa0620330 AT1G77870.1 49.167 120 59 1 1 118 1 120 7.55e-36 119
Msa0620330 AT1G22050.1 46.154 117 61 2 3 118 4 119 4.55e-35 117
Msa0620330 AT5G15460.2 47.826 115 57 1 4 115 5 119 1.30e-31 108
Msa0620330 AT5G15460.1 47.826 115 57 1 4 115 5 119 1.30e-31 108
Msa0620330 AT5G15460.4 47.826 115 57 1 4 115 5 119 1.30e-31 108
Msa0620330 AT3G01050.2 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa0620330 AT3G01050.3 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa0620330 AT3G01050.1 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa0620330 AT3G01050.4 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa0620330 AT3G01050.5 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa0620330 AT5G15460.3 47.143 70 34 1 49 115 24 93 1.81e-14 64.3

Find 41 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGAAAAGTTTGGGTTAA+TGG 0.165799 4_2:-71813435 Msa0620330:three_prime_UTR
TATATATTTATAGAAAAGTT+TGG 0.233718 4_2:-71813443 Msa0620330:three_prime_UTR
GATTAGTTCTGGTAAAATAT+TGG 0.241614 4_2:-71814772 Msa0620330:CDS
TTATACGATGGTTCTGATAT+TGG 0.261582 4_2:-71817841 Msa0620330:CDS
GAAGTGAAATTGATTAGTTC+TGG 0.322349 4_2:-71814783 Msa0620330:CDS
ACAAGAACAGACAACCTTCT+TGG 0.322618 4_2:+71813596 None:intergenic
TGAAATGCCGGAAGAAGATT+TGG 0.328122 4_2:-71817881 Msa0620330:exon
ATAAGATTAGGGTTTAAGTA+AGG 0.350178 4_2:-71817941 Msa0620330:five_prime_UTR
GCCATCTCTAGCAAAATCTA+AGG 0.369339 4_2:-71814667 Msa0620330:CDS
GGGATCGAATATTACCTTAC+TGG 0.371716 4_2:+71818070 None:intergenic
TTCACTTCATTTGCTGACTT+TGG 0.374456 4_2:+71814798 None:intergenic
GCACCATTTGGTGATATTGC+AGG 0.375129 4_2:-71814720 Msa0620330:CDS
ATATCAACCAAATCTTCTTC+CGG 0.380506 4_2:+71817874 None:intergenic
ATTGTCTCTGATTGGCCTAA+AGG 0.386290 4_2:-71817769 Msa0620330:intron
ATCAAAAGAAAGATAAGATT+AGG 0.389904 4_2:-71817953 Msa0620330:five_prime_UTR
AGTCAAAACAATCTTTGAAA+TGG 0.392525 4_2:-71818127 Msa0620330:five_prime_UTR
TCAAAAGAAAGATAAGATTA+GGG 0.393619 4_2:-71817952 Msa0620330:five_prime_UTR
GTTCTGATATTGGACCCTTT+AGG 0.396203 4_2:-71817831 Msa0620330:CDS
ATTTGGTTGATATCAAGTTT+AGG 0.398560 4_2:-71817864 Msa0620330:CDS
ATATATTTATAGAAAAGTTT+GGG 0.404295 4_2:-71813442 Msa0620330:three_prime_UTR
AGCAAAGAATTGTCTCTGAT+TGG 0.406651 4_2:-71817777 Msa0620330:CDS
TAAGATTAGGGTTTAAGTAA+GGG 0.465267 4_2:-71817940 Msa0620330:five_prime_UTR
ACAGGGATGCTGAAAATAGA+AGG 0.467632 4_2:+71813488 None:intergenic
AGTGAAAACGCCATGCATAA+TGG 0.483681 4_2:+71813334 None:intergenic
GGATCGAATATTACCTTACT+GGG 0.493683 4_2:+71818071 None:intergenic
CACCATTTGGTGATATTGCA+GGG 0.494798 4_2:-71814719 Msa0620330:CDS
ATCAAAGTGAATTGAAATGC+CGG 0.499497 4_2:-71817893 Msa0620330:exon
AAATCAAATCAAACCCAGTA+AGG 0.505665 4_2:-71818084 Msa0620330:intron
TGCATAATGGTAGCAATCAA+TGG 0.508344 4_2:+71813347 None:intergenic
AGCAGCAGATGAATACCTAA+AGG 0.527922 4_2:+71817816 None:intergenic
GGTCAGTGTAAAGCACCATT+TGG 0.539107 4_2:-71814732 Msa0620330:CDS
GCAGCAGATGAATACCTAAA+GGG 0.552811 4_2:+71817817 None:intergenic
TCTCTAGCAAAATCTAAGGC+TGG 0.561259 4_2:-71814663 Msa0620330:intron
GGTTGACGATTCATCCAAGA+AGG 0.562796 4_2:-71813610 Msa0620330:CDS
TGTGAAGACAGTTTGTGAGT+TGG 0.568556 4_2:-71813566 Msa0620330:exon
TTGGAAAACAACAAGACTGT+TGG 0.569386 4_2:-71814753 Msa0620330:CDS
AAGGATTTCGATCAAGCAGA+TGG 0.570386 4_2:+71813507 None:intergenic
TTGATTGCTACCATTATGCA+TGG 0.587552 4_2:-71813344 Msa0620330:three_prime_UTR
ATCAAGTTTAGGTTATACGA+TGG 0.616001 4_2:-71817853 Msa0620330:CDS
ACCATTTGGTGATATTGCAG+GGG 0.625339 4_2:-71814718 Msa0620330:CDS
CCATTTGGTGATATTGCAGG+GGG 0.647774 4_2:-71814717 Msa0620330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAGTAATATAATTAAAA+GGG + chr4_2:71813491-71813510 None:intergenic 10.0%
!! TGAATAGTAATATAATTAAA+AGG + chr4_2:71813492-71813511 None:intergenic 10.0%
!!! TTTATTTACTGTTTTTATTT+TGG - chr4_2:71813837-71813856 Msa0620330:intron 10.0%
!!! TTTTTTTAAAATATTTTTGG+AGG + chr4_2:71814277-71814296 None:intergenic 10.0%
!! TGAATAGAATAAAATATTAT+GGG - chr4_2:71815311-71815330 Msa0620330:intron 10.0%
!!! TACTTTTCATTTTTAAATTA+CGG + chr4_2:71817330-71817349 None:intergenic 10.0%
!! TATATATTTATAGAAAAGTT+TGG - chr4_2:71818095-71818114 Msa0620330:five_prime_UTR 10.0%
!! ATATATTTATAGAAAAGTTT+GGG - chr4_2:71818096-71818115 Msa0620330:five_prime_UTR 10.0%
!! AAGAAAATAAAAACATTGAA+AGG - chr4_2:71813367-71813386 Msa0620330:three_prime_UTR 15.0%
!!! CATTTTTGATTGAAAATTTT+AGG - chr4_2:71813561-71813580 Msa0620330:three_prime_UTR 15.0%
!! AAAAAAAAAAACAAACCTTT+AGG + chr4_2:71813787-71813806 None:intergenic 15.0%
!! TTTCATATTTATATATGAAG+TGG - chr4_2:71814074-71814093 Msa0620330:intron 15.0%
!! CTGAATAGAATAAAATATTA+TGG - chr4_2:71815310-71815329 Msa0620330:intron 15.0%
!!! GTTATTTTTATCTTAATTTC+CGG - chr4_2:71816295-71816314 Msa0620330:intron 15.0%
!!! AAACATATTTTTCATGATTT+AGG + chr4_2:71816347-71816366 None:intergenic 15.0%
!! TTATATTGAGTGATATATTA+TGG - chr4_2:71816520-71816539 Msa0620330:intron 15.0%
!!! TCATTTTCTCAAAATATTAT+TGG + chr4_2:71817462-71817481 None:intergenic 15.0%
!! ATCAAAAGAAAGATAAGATT+AGG - chr4_2:71813585-71813604 Msa0620330:CDS 20.0%
!! TCAAAAGAAAGATAAGATTA+GGG - chr4_2:71813586-71813605 Msa0620330:CDS 20.0%
!!! TTACTGTTTTTATTTTGGTT+AGG - chr4_2:71813842-71813861 Msa0620330:intron 20.0%
!!! AGTTTGACTTTAAATTTCAT+CGG - chr4_2:71813973-71813992 Msa0620330:intron 20.0%
!!! TTTTTATTAGAAGATAACCA+AGG - chr4_2:71814155-71814174 Msa0620330:intron 20.0%
!!! TTGATTTTAGATCTTTATTG+AGG + chr4_2:71814353-71814372 None:intergenic 20.0%
!! AATCAATTTAATCTTTGTTG+AGG + chr4_2:71814402-71814421 None:intergenic 20.0%
!! TGAGTAAAAGAAAATTATGA+TGG + chr4_2:71815074-71815093 None:intergenic 20.0%
!!! TATTTTATTCTATTCAGAGA+AGG + chr4_2:71815307-71815326 None:intergenic 20.0%
!!! AAGATTTTTGTAACTCAATA+AGG - chr4_2:71815794-71815813 Msa0620330:intron 20.0%
!!! AGATTTTTGTAACTCAATAA+GGG - chr4_2:71815795-71815814 Msa0620330:intron 20.0%
!! GATTGTGATATAATTACTAA+AGG - chr4_2:71815819-71815838 Msa0620330:intron 20.0%
!! ATGTTAAAATTACACAGAAA+AGG - chr4_2:71816016-71816035 Msa0620330:intron 20.0%
!! ACTTATATTCCATGTATTAT+TGG + chr4_2:71816277-71816296 None:intergenic 20.0%
!! AAAAATATGTTTAACATGCT+CGG - chr4_2:71816355-71816374 Msa0620330:intron 20.0%
!! TGATTATTGTTAATTCTAAC+AGG - chr4_2:71816552-71816571 Msa0620330:intron 20.0%
!!! TGAAAAAAGAATTTTCTACA+GGG + chr4_2:71817054-71817073 None:intergenic 20.0%
!!! TTGAAAAAAGAATTTTCTAC+AGG + chr4_2:71817055-71817074 None:intergenic 20.0%
!! TTCAAATCAAAAGATATTGT+AGG + chr4_2:71817851-71817870 None:intergenic 20.0%
!!! TACAATATCTTTTGATTTGA+AGG - chr4_2:71817850-71817869 Msa0620330:CDS 20.0%
!!! CTTTCCTTTTTTTTCTTCTT+CGG + chr4_2:71813350-71813369 None:intergenic 25.0%
!! AGTCAAAACAATCTTTGAAA+TGG - chr4_2:71813411-71813430 Msa0620330:three_prime_UTR 25.0%
! ATAAGATTAGGGTTTAAGTA+AGG - chr4_2:71813597-71813616 Msa0620330:CDS 25.0%
! TAAGATTAGGGTTTAAGTAA+GGG - chr4_2:71813598-71813617 Msa0620330:CDS 25.0%
!! ATTTGGTTGATATCAAGTTT+AGG - chr4_2:71813674-71813693 Msa0620330:intron 25.0%
!! TTAGGTTTGATTGTTGATTA+GGG - chr4_2:71813860-71813879 Msa0620330:intron 25.0%
!!! GTGTCACTTTTTTTTAGTTT+TGG - chr4_2:71813882-71813901 Msa0620330:intron 25.0%
!!! TTTCTGTGTTGTTTTTATTG+AGG - chr4_2:71814859-71814878 Msa0620330:intron 25.0%
! TTGTAACAGCAGAAAATATA+CGG + chr4_2:71814886-71814905 None:intergenic 25.0%
! TAAGGAAAATAGATTGACAT+TGG + chr4_2:71815348-71815367 None:intergenic 25.0%
! AAAGCTGTTAATATCAGTAT+TGG + chr4_2:71815408-71815427 None:intergenic 25.0%
! AATTACTAAAGGAGAAAACT+AGG - chr4_2:71815830-71815849 Msa0620330:intron 25.0%
! TTAAAATTACACAGAAAAGG+TGG - chr4_2:71816019-71816038 Msa0620330:intron 25.0%
! ATACAAAAACTAAGATGTGT+AGG - chr4_2:71816121-71816140 Msa0620330:intron 25.0%
! AGTAGGGTTCTTATTATTAT+AGG + chr4_2:71816223-71816242 None:intergenic 25.0%
! GATGTATCGTTAAAATAGTA+GGG + chr4_2:71816239-71816258 None:intergenic 25.0%
! AGATGTATCGTTAAAATAGT+AGG + chr4_2:71816240-71816259 None:intergenic 25.0%
! TATTCCATGTATTATTGGAA+GGG + chr4_2:71816272-71816291 None:intergenic 25.0%
! ATATTCCATGTATTATTGGA+AGG + chr4_2:71816273-71816292 None:intergenic 25.0%
!! TTCTCTTTTACAACTTATTG+AGG - chr4_2:71816636-71816655 Msa0620330:intron 25.0%
!!! GATTAGTTCTGGTAAAATAT+TGG - chr4_2:71816766-71816785 Msa0620330:intron 25.0%
! TGCATTAACAATAGAAACTA+TGG + chr4_2:71816907-71816926 None:intergenic 25.0%
!!! CATATTACTTTAGAGTGTTT+GGG + chr4_2:71817388-71817407 None:intergenic 25.0%
!!! CAAACACTCTAAAGTAATAT+GGG - chr4_2:71817387-71817406 Msa0620330:intron 25.0%
!!! CATTAGAATTGGTTTTATCT+TGG + chr4_2:71817662-71817681 None:intergenic 25.0%
! AAGTTAGCAATCATTAGAAT+TGG + chr4_2:71817673-71817692 None:intergenic 25.0%
! AACTTAAAACCATACATGTT+TGG - chr4_2:71817688-71817707 Msa0620330:intron 25.0%
! ACTTAAAACCATACATGTTT+GGG - chr4_2:71817689-71817708 Msa0620330:intron 25.0%
! AGACAATTAAATTACAAGGT+GGG + chr4_2:71817724-71817743 None:intergenic 25.0%
! TACCAGACAATTAAATTACA+AGG + chr4_2:71817728-71817747 None:intergenic 25.0%
! TAATTTAATTGTCTGGTAGA+GGG - chr4_2:71817730-71817749 Msa0620330:intron 25.0%
! GGGTTATATGAACATAATAA+TGG - chr4_2:71817750-71817769 Msa0620330:intron 25.0%
! ATGAACATAATAATGGTTGA+AGG - chr4_2:71817757-71817776 Msa0620330:intron 25.0%
!! TTGTATACGTATTTTACACA+GGG + chr4_2:71818070-71818089 None:intergenic 25.0%
!! TATAGAAAAGTTTGGGTTAA+TGG - chr4_2:71818103-71818122 Msa0620330:five_prime_UTR 25.0%
!! TTTTTATTACAACGTCGAAA+AGG - chr4_2:71818152-71818171 Msa0620330:five_prime_UTR 25.0%
TAAAAACATTGAAAGGAGCT+AGG - chr4_2:71813374-71813393 Msa0620330:three_prime_UTR 30.0%
AAATCAAATCAAACCCAGTA+AGG - chr4_2:71813454-71813473 Msa0620330:three_prime_UTR 30.0%
ATCAAAGTGAATTGAAATGC+CGG - chr4_2:71813645-71813664 Msa0620330:intron 30.0%
ATATCAACCAAATCTTCTTC+CGG + chr4_2:71813667-71813686 None:intergenic 30.0%
! ATCAAGTTTAGGTTATACGA+TGG - chr4_2:71813685-71813704 Msa0620330:intron 30.0%
!! TTATACGATGGTTCTGATAT+TGG - chr4_2:71813697-71813716 Msa0620330:intron 30.0%
! GTTAGGTTTGATTGTTGATT+AGG - chr4_2:71813859-71813878 Msa0620330:intron 30.0%
!! TCTTTGAGATGTTAGTTTAG+TGG - chr4_2:71813946-71813965 Msa0620330:intron 30.0%
ACTTTAAATTTCATCGGCAA+CGG - chr4_2:71813979-71813998 Msa0620330:intron 30.0%
!! CTTGCTCTTTTCTTTTAAGT+TGG - chr4_2:71814049-71814068 Msa0620330:intron 30.0%
TCAAAATGAAACTCCTAGTT+TGG + chr4_2:71814100-71814119 None:intergenic 30.0%
!!! TAGGAGTTTCATTTTGAGTT+TGG - chr4_2:71814103-71814122 Msa0620330:intron 30.0%
TTAGAAGATAACCAAGGATT+TGG - chr4_2:71814161-71814180 Msa0620330:intron 30.0%
!! TTGGAGCTGTTTGATTTTTA+TGG - chr4_2:71814180-71814199 Msa0620330:intron 30.0%
TTTAGTAAAATCACTGTGCT+GGG + chr4_2:71814717-71814736 None:intergenic 30.0%
! TTTTAGTAAAATCACTGTGC+TGG + chr4_2:71814718-71814737 None:intergenic 30.0%
ACAACACAGAAACCTAAAAT+GGG + chr4_2:71814851-71814870 None:intergenic 30.0%
AACAACACAGAAACCTAAAA+TGG + chr4_2:71814852-71814871 None:intergenic 30.0%
AACTCATACAGAATTCTGAT+TGG + chr4_2:71815460-71815479 None:intergenic 30.0%
AATCTTAAACTCCATTTACC+TGG + chr4_2:71815780-71815799 None:intergenic 30.0%
ATTTCATCATCTGTGAGATA+TGG + chr4_2:71816059-71816078 None:intergenic 30.0%
AAAACTAAGATGTGTAGGTA+TGG - chr4_2:71816126-71816145 Msa0620330:intron 30.0%
ACACTGTCTAACATCATTAA+CGG - chr4_2:71816155-71816174 Msa0620330:intron 30.0%
! TTTTATGCAAGGAATCGTAA+TGG + chr4_2:71816196-71816215 None:intergenic 30.0%
ATTACGATTCCTTGCATAAA+AGG - chr4_2:71816195-71816214 Msa0620330:intron 30.0%
! TTATAGGAACCTTTTATGCA+AGG + chr4_2:71816207-71816226 None:intergenic 30.0%
ATTCCATGTATTATTGGAAG+GGG + chr4_2:71816271-71816290 None:intergenic 30.0%
AGTTGTAAAAGAGAACCTAA+AGG + chr4_2:71816631-71816650 None:intergenic 30.0%
TATTGAGGATTATGTATGCA+CGG - chr4_2:71816651-71816670 Msa0620330:intron 30.0%
! AAACGTTTTGCCTACATTAT+GGG + chr4_2:71816717-71816736 None:intergenic 30.0%
! GAAGTGAAATTGATTAGTTC+TGG - chr4_2:71816755-71816774 Msa0620330:intron 30.0%
TGAAATAGATGAGGTAGAAA+TGG - chr4_2:71816970-71816989 Msa0620330:intron 30.0%
! GCTGAAAAACATAATTTGCA+GGG - chr4_2:71816992-71817011 Msa0620330:intron 30.0%
! AATCTTTTTACCTTGCGTAT+AGG - chr4_2:71817073-71817092 Msa0620330:intron 30.0%
!! CCATATTACTTTAGAGTGTT+TGG + chr4_2:71817389-71817408 None:intergenic 30.0%
!! CCAAACACTCTAAAGTAATA+TGG - chr4_2:71817386-71817405 Msa0620330:intron 30.0%
CTTAAAACCATACATGTTTG+GGG - chr4_2:71817690-71817709 Msa0620330:intron 30.0%
TTAAAACCATACATGTTTGG+GGG - chr4_2:71817691-71817710 Msa0620330:intron 30.0%
CAGACAATTAAATTACAAGG+TGG + chr4_2:71817725-71817744 None:intergenic 30.0%
CACCTTGTAATTTAATTGTC+TGG - chr4_2:71817723-71817742 Msa0620330:intron 30.0%
GTAATTTAATTGTCTGGTAG+AGG - chr4_2:71817729-71817748 Msa0620330:intron 30.0%
ATAACATGCTTCATACTTGA+TGG + chr4_2:71817803-71817822 None:intergenic 30.0%
! CTTTTACTTAACAGAGAAGA+AGG - chr4_2:71817907-71817926 Msa0620330:five_prime_UTR 30.0%
! CTTGTATACGTATTTTACAC+AGG + chr4_2:71818071-71818090 None:intergenic 30.0%
!!! TTTTTTTCTTCTTCGGTTGG+TGG + chr4_2:71813343-71813362 None:intergenic 35.0%
!!! CCTTTTTTTTCTTCTTCGGT+TGG + chr4_2:71813346-71813365 None:intergenic 35.0%
CCAACCGAAGAAGAAAAAAA+AGG - chr4_2:71813343-71813362 Msa0620330:three_prime_UTR 35.0%
GGATCGAATATTACCTTACT+GGG + chr4_2:71813470-71813489 None:intergenic 35.0%
AGCAAAGAATTGTCTCTGAT+TGG - chr4_2:71813761-71813780 Msa0620330:intron 35.0%
!!! AGTTTTGGAACTTGTTTGCT+TGG - chr4_2:71813897-71813916 Msa0620330:intron 35.0%
ATATATGAAGTGGCCAAACT+AGG - chr4_2:71814084-71814103 Msa0620330:intron 35.0%
TGGTTGTTTGTGTCAATATG+TGG - chr4_2:71814200-71814219 Msa0620330:intron 35.0%
!! TCAATATGTGGTGTTGTTCA+TGG - chr4_2:71814212-71814231 Msa0620330:intron 35.0%
! GTGTTTATGGCCTTAATCTT+GGG + chr4_2:71814242-71814261 None:intergenic 35.0%
! TGTGTTTATGGCCTTAATCT+TGG + chr4_2:71814243-71814262 None:intergenic 35.0%
GCTTAAGACGATTGTGTTTA+TGG + chr4_2:71814255-71814274 None:intergenic 35.0%
TTGTGCTAACTCACCAAATT+AGG - chr4_2:71814438-71814457 Msa0620330:intron 35.0%
TTCTTCTCCTAGAAGAGAAT+CGG - chr4_2:71814612-71814631 Msa0620330:intron 35.0%
AAAAAACCCGATTCTCTTCT+AGG + chr4_2:71814622-71814641 None:intergenic 35.0%
!!! AGAAGAGAATCGGGTTTTTT+TGG - chr4_2:71814622-71814641 Msa0620330:intron 35.0%
!!! GAAGAGAATCGGGTTTTTTT+GGG - chr4_2:71814623-71814642 Msa0620330:intron 35.0%
!!! AAGAGAATCGGGTTTTTTTG+GGG - chr4_2:71814624-71814643 Msa0620330:intron 35.0%
! AACCTAAAATGGGCTTGATT+TGG + chr4_2:71814841-71814860 None:intergenic 35.0%
GGTATGAATGTGGGTTTATT+TGG - chr4_2:71815010-71815029 Msa0620330:intron 35.0%
!! GATCTAGTTCTTCACATTCA+TGG + chr4_2:71815626-71815645 None:intergenic 35.0%
AGGAATGAAAGGTAAAAGTG+TGG - chr4_2:71815683-71815702 Msa0620330:intron 35.0%
TCTCTAGACAATGATCACAA+CGG - chr4_2:71815745-71815764 Msa0620330:intron 35.0%
TCTAATAACCATGTCCTCAT+TGG + chr4_2:71815883-71815902 None:intergenic 35.0%
AGAGAGGAATGCAAAACAAA+AGG - chr4_2:71815916-71815935 Msa0620330:intron 35.0%
CAGAGCAGTATATTCTTTCA+TGG + chr4_2:71815991-71816010 None:intergenic 35.0%
GAAAGAATATACTGCTCTGT+TGG - chr4_2:71815992-71816011 Msa0620330:intron 35.0%
! AATCATTTTACAGGGTTGAC+CGG + chr4_2:71816317-71816336 None:intergenic 35.0%
TCAACCCTGTAAAATGATTG+AGG - chr4_2:71816318-71816337 Msa0620330:intron 35.0%
! GTGTCCTCAATCATTTTACA+GGG + chr4_2:71816325-71816344 None:intergenic 35.0%
AACATGCTCGGTATAACATT+TGG - chr4_2:71816367-71816386 Msa0620330:intron 35.0%
! ACTCTCTGCAAGGAAAATTT+TGG - chr4_2:71816420-71816439 Msa0620330:intron 35.0%
GTTTGAACTGAGTAAGTGAA+GGG + chr4_2:71816446-71816465 None:intergenic 35.0%
AGTTTGAACTGAGTAAGTGA+AGG + chr4_2:71816447-71816466 None:intergenic 35.0%
AATACTCATGTAGCTCCTTT+AGG - chr4_2:71816613-71816632 Msa0620330:intron 35.0%
ATTGAGGATTATGTATGCAC+GGG - chr4_2:71816652-71816671 Msa0620330:intron 35.0%
! TGTTCTTTTCCCCATAATGT+AGG - chr4_2:71816704-71816723 Msa0620330:intron 35.0%
! AACGTTTTGCCTACATTATG+GGG + chr4_2:71816716-71816735 None:intergenic 35.0%
! GAAACGTTTTGCCTACATTA+TGG + chr4_2:71816718-71816737 None:intergenic 35.0%
!! TTCACTTCATTTGCTGACTT+TGG + chr4_2:71816743-71816762 None:intergenic 35.0%
TTGGAAAACAACAAGACTGT+TGG - chr4_2:71816785-71816804 Msa0620330:intron 35.0%
GGCTGAATTACATGTTAATG+TGG + chr4_2:71816941-71816960 None:intergenic 35.0%
TCATCTATTTCATCAAGAGG+TGG + chr4_2:71816962-71816981 None:intergenic 35.0%
ACCTCTTGATGAAATAGATG+AGG - chr4_2:71816961-71816980 Msa0620330:intron 35.0%
ACCTCATCTATTTCATCAAG+AGG + chr4_2:71816965-71816984 None:intergenic 35.0%
! GGCTGAAAAACATAATTTGC+AGG - chr4_2:71816991-71817010 Msa0620330:intron 35.0%
! AATTTTCTACAGGGAAAAGC+TGG + chr4_2:71817045-71817064 None:intergenic 35.0%
!! TTACTTTAGAGTGTTTGGGT+AGG + chr4_2:71817384-71817403 None:intergenic 35.0%
ACACCTTGAACCATAAATGT+CGG - chr4_2:71817542-71817561 Msa0620330:intron 35.0%
CTTTGTAACACCGACATTTA+TGG + chr4_2:71817555-71817574 None:intergenic 35.0%
! ATAACTTCTCAAAGGCATGT+CGG + chr4_2:71817585-71817604 None:intergenic 35.0%
!!! TGGTTTTATCTTGGACAAGT+GGG + chr4_2:71817653-71817672 None:intergenic 35.0%
!!! TTGGTTTTATCTTGGACAAG+TGG + chr4_2:71817654-71817673 None:intergenic 35.0%
TGCATAATGGTAGCAATCAA+TGG + chr4_2:71818194-71818213 None:intergenic 35.0%
TTGATTGCTACCATTATGCA+TGG - chr4_2:71818194-71818213 Msa0620330:five_prime_UTR 35.0%
GGGATCGAATATTACCTTAC+TGG + chr4_2:71813471-71813490 None:intergenic 40.0%
TGAAATGCCGGAAGAAGATT+TGG - chr4_2:71813657-71813676 Msa0620330:intron 40.0%
GTTCTGATATTGGACCCTTT+AGG - chr4_2:71813707-71813726 Msa0620330:intron 40.0%
GCAGCAGATGAATACCTAAA+GGG + chr4_2:71813724-71813743 None:intergenic 40.0%
AGCAGCAGATGAATACCTAA+AGG + chr4_2:71813725-71813744 None:intergenic 40.0%
!! ATTGTCTCTGATTGGCCTAA+AGG - chr4_2:71813769-71813788 Msa0620330:intron 40.0%
TTAAATTTCATCGGCAACGG+CGG - chr4_2:71813982-71814001 Msa0620330:intron 40.0%
ATCAAACAGCTCCAAATCCT+TGG + chr4_2:71814175-71814194 None:intergenic 40.0%
!! ACCAATCCTCAAGTTGACAA+CGG - chr4_2:71814525-71814544 Msa0620330:intron 40.0%
!!! ACATCTGGTTTTTCCAGAGT+TGG - chr4_2:71814549-71814568 Msa0620330:intron 40.0%
!! ATTCTTCGAGTTGCCCATTT+GGG + chr4_2:71814582-71814601 None:intergenic 40.0%
!! AATTCTTCGAGTTGCCCATT+TGG + chr4_2:71814583-71814602 None:intergenic 40.0%
TCTTCTCCTAGAAGAGAATC+GGG - chr4_2:71814613-71814632 Msa0620330:intron 40.0%
ATTCTTTGAGTCGCCCATTT+GGG + chr4_2:71814661-71814680 None:intergenic 40.0%
! AGCCAAATCAAGCCCATTTT+AGG - chr4_2:71814836-71814855 Msa0620330:intron 40.0%
! TCTCGTCTGTGTTAGTTTCA+TGG - chr4_2:71814983-71815002 Msa0620330:intron 40.0%
! CTCGTCTGTGTTAGTTTCAT+GGG - chr4_2:71814984-71815003 Msa0620330:intron 40.0%
! TCTGTGTTAGTTTCATGGGT+AGG - chr4_2:71814988-71815007 Msa0620330:intron 40.0%
! CTGTGTTAGTTTCATGGGTA+GGG - chr4_2:71814989-71815008 Msa0620330:intron 40.0%
GAAGACTGAATAATGACGAG+AGG - chr4_2:71815037-71815056 Msa0620330:intron 40.0%
TGAATAATGACGAGAGGACA+CGG - chr4_2:71815043-71815062 Msa0620330:intron 40.0%
TTTCATTCACACAGACAAGC+AGG - chr4_2:71815256-71815275 Msa0620330:intron 40.0%
TTCCTTATCAACAGCCGTTA+CGG - chr4_2:71815361-71815380 Msa0620330:intron 40.0%
ACTAACTTCGATCTCCGTAA+CGG + chr4_2:71815378-71815397 None:intergenic 40.0%
!! GAGGCATCGGTTTATTAAGA+GGG - chr4_2:71815599-71815618 Msa0620330:intron 40.0%
AGAACTAGATCTAGCATCAG+TGG - chr4_2:71815635-71815654 Msa0620330:intron 40.0%
GAACTAGATCTAGCATCAGT+GGG - chr4_2:71815636-71815655 Msa0620330:intron 40.0%
ATGGCAGAAGTAGGAATGAA+AGG - chr4_2:71815672-71815691 Msa0620330:intron 40.0%
GTGTGGTAGTTGTAGTTAGT+TGG - chr4_2:71815700-71815719 Msa0620330:intron 40.0%
TCTAGAGACTATGTCCTTGT+TGG + chr4_2:71815733-71815752 None:intergenic 40.0%
AGACAATGATCACAACGGAT+AGG - chr4_2:71815750-71815769 Msa0620330:intron 40.0%
AATGATCACAACGGATAGGA+AGG - chr4_2:71815754-71815773 Msa0620330:intron 40.0%
AAAGGAGAAAACTAGGAGTG+TGG - chr4_2:71815837-71815856 Msa0620330:intron 40.0%
TGGTAGTTGTAGATTCTGCT+CGG - chr4_2:71815857-71815876 Msa0620330:intron 40.0%
AGACAACTGTCAGATTAGAG+AGG - chr4_2:71815900-71815919 Msa0620330:intron 40.0%
GCAAGGAATCGTAATGGTTT+AGG + chr4_2:71816190-71816209 None:intergenic 40.0%
TGACCCCTTCCAATAATACA+TGG - chr4_2:71816265-71816284 Msa0620330:intron 40.0%
! GGTGTCCTCAATCATTTTAC+AGG + chr4_2:71816326-71816345 None:intergenic 40.0%
! CACCATTTGGTGATATTGCA+GGG - chr4_2:71816819-71816838 Msa0620330:intron 40.0%
! ACCATTTGGTGATATTGCAG+GGG - chr4_2:71816820-71816839 Msa0620330:intron 40.0%
GCCATCTCTAGCAAAATCTA+AGG - chr4_2:71816871-71816890 Msa0620330:intron 40.0%
! GCCTTAGATTTTGCTAGAGA+TGG + chr4_2:71816875-71816894 None:intergenic 40.0%
! TCTCTAGCAAAATCTAAGGC+TGG - chr4_2:71816875-71816894 Msa0620330:intron 40.0%
GTAACAAAGTCCTATACGCA+AGG + chr4_2:71817086-71817105 None:intergenic 40.0%
TAGAAGTCGTTGAAAGCCTA+AGG - chr4_2:71817134-71817153 Msa0620330:intron 40.0%
AGAAGTCGTTGAAAGCCTAA+GGG - chr4_2:71817135-71817154 Msa0620330:intron 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG - chr4_2:71817152-71817171 Msa0620330:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr4_2:71817158-71817177 Msa0620330:intron 40.0%
ATTGAGGGTTTAGGAGAAGA+AGG - chr4_2:71817167-71817186 Msa0620330:intron 40.0%
TTGAGGGTTTAGGAGAAGAA+GGG - chr4_2:71817168-71817187 Msa0620330:intron 40.0%
! TTTAGAGTGTTTGGGTAGGA+GGG + chr4_2:71817380-71817399 None:intergenic 40.0%
TTTATGGTTCAAGGTGTGTC+TGG + chr4_2:71817539-71817558 None:intergenic 40.0%
ACACCGACATTTATGGTTCA+AGG + chr4_2:71817548-71817567 None:intergenic 40.0%
GTTTAGTAGATGAGATGCCT+CGG + chr4_2:71817608-71817627 None:intergenic 40.0%
TAATGGTTGAAGGAGATACC+TGG - chr4_2:71817767-71817786 Msa0620330:intron 40.0%
AATGGTTGAAGGAGATACCT+GGG - chr4_2:71817768-71817787 Msa0620330:intron 40.0%
ACAAGAACAGACAACCTTCT+TGG + chr4_2:71817945-71817964 None:intergenic 40.0%
TGTGAAGACAGTTTGTGAGT+TGG - chr4_2:71817972-71817991 Msa0620330:intron 40.0%
! ATCAAGCAGATGGTTTTCTG+TGG + chr4_2:71818024-71818043 None:intergenic 40.0%
AAGGATTTCGATCAAGCAGA+TGG + chr4_2:71818034-71818053 None:intergenic 40.0%
ACAGGGATGCTGAAAATAGA+AGG + chr4_2:71818053-71818072 None:intergenic 40.0%
AGTGAAAACGCCATGCATAA+TGG + chr4_2:71818207-71818226 None:intergenic 40.0%
!! TATGTGGTGTTGTTCATGGC+TGG - chr4_2:71814216-71814235 Msa0620330:intron 45.0%
CGGGGTCAAAGATCCTAATT+TGG + chr4_2:71814454-71814473 None:intergenic 45.0%
!! ACTTGAGGATTGGTCCCATA+GGG + chr4_2:71814519-71814538 None:intergenic 45.0%
!! AACTTGAGGATTGGTCCCAT+AGG + chr4_2:71814520-71814539 None:intergenic 45.0%
!! CCAATCCTCAAGTTGACAAC+GGG - chr4_2:71814526-71814545 Msa0620330:intron 45.0%
AGTTGGACTACCTCCCAAAT+GGG - chr4_2:71814566-71814585 Msa0620330:intron 45.0%
GCAACTCGAAGAATTGAACC+CGG - chr4_2:71814588-71814607 Msa0620330:intron 45.0%
CAACTCGAAGAATTGAACCC+GGG - chr4_2:71814589-71814608 Msa0620330:intron 45.0%
! TCTCTTCTAGGAGAAGAACC+CGG + chr4_2:71814610-71814629 None:intergenic 45.0%
GATTCTTTGAGTCGCCCATT+TGG + chr4_2:71814662-71814681 None:intergenic 45.0%
CGACTCAAAGAATCGAACCT+GGG - chr4_2:71814668-71814687 Msa0620330:CDS 45.0%
! CTCTTCTAGGAAAAGAACCC+AGG + chr4_2:71814688-71814707 None:intergenic 45.0%
!! GGGCTTGATTTGGCTTACAT+TGG + chr4_2:71814831-71814850 None:intergenic 45.0%
TCATGGGTAGGGTATGAATG+TGG - chr4_2:71815000-71815019 Msa0620330:intron 45.0%
CATGGGTAGGGTATGAATGT+GGG - chr4_2:71815001-71815020 Msa0620330:intron 45.0%
GAATAATGACGAGAGGACAC+GGG - chr4_2:71815044-71815063 Msa0620330:intron 45.0%
GAGATCATGAGACTAGGAGA+GGG + chr4_2:71815511-71815530 None:intergenic 45.0%
GGAATGGAGATCATGAGACT+AGG + chr4_2:71815517-71815536 None:intergenic 45.0%
TTGGCACCACTTGATTCAAG+TGG - chr4_2:71815577-71815596 Msa0620330:intron 45.0%
ATGCCTCCACTTGAATCAAG+TGG + chr4_2:71815586-71815605 None:intergenic 45.0%
! CTTGATTCAAGTGGAGGCAT+CGG - chr4_2:71815586-71815605 Msa0620330:intron 45.0%
!! GGAGGCATCGGTTTATTAAG+AGG - chr4_2:71815598-71815617 Msa0620330:intron 45.0%
ATCTAGCATCAGTGGGAAAG+AGG - chr4_2:71815643-71815662 Msa0620330:intron 45.0%
AGTGGGAAAGAGGAAAAGCA+TGG - chr4_2:71815653-71815672 Msa0620330:intron 45.0%
! AGGAAAAGCATGGCAGAAGT+AGG - chr4_2:71815663-71815682 Msa0620330:intron 45.0%
ACAGAAAAGGTGGAAACGAG+AGG - chr4_2:71816029-71816048 Msa0620330:intron 45.0%
TTGTCGTCAAACTCTCTGCA+AGG - chr4_2:71816410-71816429 Msa0620330:intron 45.0%
! GGTCAGTGTAAAGCACCATT+TGG - chr4_2:71816806-71816825 Msa0620330:intron 45.0%
! GCACCATTTGGTGATATTGC+AGG - chr4_2:71816818-71816837 Msa0620330:intron 45.0%
! CCATTTGGTGATATTGCAGG+GGG - chr4_2:71816821-71816840 Msa0620330:intron 45.0%
! TGAAAGCCTAAGGGTGTGTT+TGG - chr4_2:71817144-71817163 Msa0620330:intron 45.0%
CTCAATCCAAACACACCCTT+AGG + chr4_2:71817153-71817172 None:intergenic 45.0%
! CTAAGGGTGTGTTTGGATTG+AGG - chr4_2:71817151-71817170 Msa0620330:intron 45.0%
!! CTTTAGAGTGTTTGGGTAGG+AGG + chr4_2:71817381-71817400 None:intergenic 45.0%
AACCTATGAAGCACAGACAC+TGG - chr4_2:71817416-71817435 Msa0620330:intron 45.0%
GTAATCACATGCCTCGTTGT+CGG - chr4_2:71817493-71817512 Msa0620330:intron 45.0%
! TGCCTTTGAGAAGTTATCCG+AGG - chr4_2:71817588-71817607 Msa0620330:intron 45.0%
TGCCTCGGATAACTTCTCAA+AGG + chr4_2:71817593-71817612 None:intergenic 45.0%
CAACTTCCCCCAAACATGTA+TGG + chr4_2:71817700-71817719 None:intergenic 45.0%
GGTTGACGATTCATCCAAGA+AGG - chr4_2:71817928-71817947 Msa0620330:five_prime_UTR 45.0%
!!! ATGTTTTTTTAAAATATTTT+TGG + chr4_2:71814280-71814299 None:intergenic 5.0%
! TCATGGCTGGCCCAAGATTA+AGG - chr4_2:71814229-71814248 Msa0620330:intron 50.0%
TAGGATCTTTGACCCCGAGT+AGG - chr4_2:71814457-71814476 Msa0620330:intron 50.0%
TAAGCCGTCAGGATACCTTG+AGG + chr4_2:71814485-71814504 None:intergenic 50.0%
CCCGTTGTCAACTTGAGGAT+TGG + chr4_2:71814529-71814548 None:intergenic 50.0%
GATGTCCCGTTGTCAACTTG+AGG + chr4_2:71814534-71814553 None:intergenic 50.0%
! CAAGTTGACAACGGGACATC+TGG - chr4_2:71814534-71814553 Msa0620330:intron 50.0%
TTTGGGAGGTAGTCCAACTC+TGG + chr4_2:71814565-71814584 None:intergenic 50.0%
GAGTTGGACTACCTCCCAAA+TGG - chr4_2:71814565-71814584 Msa0620330:intron 50.0%
! CTCTTCTAGGAGAAGAACCC+GGG + chr4_2:71814609-71814628 None:intergenic 50.0%
!!! GAATCGGGTTTTTTTGGGGC+TGG - chr4_2:71814628-71814647 Msa0620330:intron 50.0%
GCGACTCAAAGAATCGAACC+TGG - chr4_2:71814667-71814686 Msa0620330:CDS 50.0%
TGCTGGGATGACTCTCTTCT+AGG + chr4_2:71814701-71814720 None:intergenic 50.0%
ACAAGCAGGCGTATAGCTCT+TGG - chr4_2:71815270-71815289 Msa0620330:intron 50.0%
CTCCGTAACGGCTGTTGATA+AGG + chr4_2:71815366-71815385 None:intergenic 50.0%
GGAGATCATGAGACTAGGAG+AGG + chr4_2:71815512-71815531 None:intergenic 50.0%
CCAGAATTGGACAGCTGGAA+TGG + chr4_2:71815533-71815552 None:intergenic 50.0%
CCATTCCAGCTGTCCAATTC+TGG - chr4_2:71815530-71815549 Msa0620330:intron 50.0%
ATCAGTCACAGACACAGGGA+CGG + chr4_2:71815558-71815577 None:intergenic 50.0%
TCCCTGTGTCTGTGACTGAT+TGG - chr4_2:71815558-71815577 Msa0620330:intron 50.0%
GCCAATCAGTCACAGACACA+GGG + chr4_2:71815562-71815581 None:intergenic 50.0%
TGCCAATCAGTCACAGACAC+AGG + chr4_2:71815563-71815582 None:intergenic 50.0%
GCACCACTTGATTCAAGTGG+AGG - chr4_2:71815580-71815599 Msa0620330:intron 50.0%
! TAGTTGGTGCTCAGCCAACA+AGG - chr4_2:71815716-71815735 Msa0620330:intron 50.0%
GGATAGGAAGGCCAGGTAAA+TGG - chr4_2:71815766-71815785 Msa0620330:intron 50.0%
TAGATTCTGCTCGGCCAATG+AGG - chr4_2:71815866-71815885 Msa0620330:intron 50.0%
CCCCCTGCAATATCACCAAA+TGG + chr4_2:71816824-71816843 None:intergenic 50.0%
AGGGTTTAGGAGAAGAAGGG+AGG - chr4_2:71817171-71817190 Msa0620330:intron 50.0%
GGGTTTAGGAGAAGAAGGGA+GGG - chr4_2:71817172-71817191 Msa0620330:intron 50.0%
GGTTTAGGAGAAGAAGGGAG+GGG - chr4_2:71817173-71817192 Msa0620330:intron 50.0%
TTGGGTAGGAGGGTTTAGGA+GGG + chr4_2:71817370-71817389 None:intergenic 50.0%
TTTGGGTAGGAGGGTTTAGG+AGG + chr4_2:71817371-71817390 None:intergenic 50.0%
GTGTTTGGGTAGGAGGGTTT+AGG + chr4_2:71817374-71817393 None:intergenic 50.0%
GTCCAGTGTCTGTGCTTCAT+AGG + chr4_2:71817421-71817440 None:intergenic 50.0%
CGTGTTAGTATCCGACAACG+AGG + chr4_2:71817507-71817526 None:intergenic 50.0%
!! CTTGATGGTGACTCTAACCC+AGG + chr4_2:71817788-71817807 None:intergenic 50.0%
! ATACCTTGAGGCGCCTACTC+GGG + chr4_2:71814473-71814492 None:intergenic 55.0%
! GATACCTTGAGGCGCCTACT+CGG + chr4_2:71814474-71814493 None:intergenic 55.0%
TTAGCCCCTTTGGGCCCTAT+GGG - chr4_2:71814502-71814521 Msa0620330:intron 55.0%
TTGGTCCCATAGGGCCCAAA+GGG + chr4_2:71814510-71814529 None:intergenic 55.0%
ATTGGTCCCATAGGGCCCAA+AGG + chr4_2:71814511-71814530 None:intergenic 55.0%
!! CTTCGAGTTGCCCATTTGGG+AGG + chr4_2:71814579-71814598 None:intergenic 55.0%
GGCTGGACTACCTCCCAAAT+GGG - chr4_2:71814645-71814664 Msa0620330:intron 55.0%
CTTTGAGTCGCCCATTTGGG+AGG + chr4_2:71814658-71814677 None:intergenic 55.0%
TCACAACGGATAGGAAGGCC+AGG - chr4_2:71815759-71815778 Msa0620330:intron 55.0%
TTAGGAGAAGAAGGGAGGGG+AGG - chr4_2:71817176-71817195 Msa0620330:intron 55.0%
TAGGAGAAGAAGGGAGGGGA+GGG - chr4_2:71817177-71817196 Msa0620330:intron 55.0%
AGGAGGGTTTAGGAGGGGAA+GGG + chr4_2:71817364-71817383 None:intergenic 55.0%
TAGGAGGGTTTAGGAGGGGA+AGG + chr4_2:71817365-71817384 None:intergenic 55.0%
TGGGTAGGAGGGTTTAGGAG+GGG + chr4_2:71817369-71817388 None:intergenic 55.0%
! TACCTTGAGGCGCCTACTCG+GGG + chr4_2:71814472-71814491 None:intergenic 60.0%
! GGCGCCTCAAGGTATCCTGA+CGG - chr4_2:71814478-71814497 Msa0620330:intron 60.0%
TCCTGACGGCTTAGCCCCTT+TGG - chr4_2:71814492-71814511 Msa0620330:intron 60.0%
CCTGACGGCTTAGCCCCTTT+GGG - chr4_2:71814493-71814512 Msa0620330:intron 60.0%
CTTAGCCCCTTTGGGCCCTA+TGG - chr4_2:71814501-71814520 Msa0620330:intron 60.0%
TGGTCCCATAGGGCCCAAAG+GGG + chr4_2:71814509-71814528 None:intergenic 60.0%
GGGCTGGACTACCTCCCAAA+TGG - chr4_2:71814644-71814663 Msa0620330:intron 60.0%
CGGAGCCAGAATTGGACAGC+TGG + chr4_2:71815538-71815557 None:intergenic 60.0%
CACAGGGACGGAGCCAGAAT+TGG + chr4_2:71815546-71815565 None:intergenic 60.0%
CTGCTCGGCCAATGAGGACA+TGG - chr4_2:71815872-71815891 Msa0620330:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr4_2:71817359-71817378 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr4_2:71817360-71817379 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr4_2:71817361-71817380 None:intergenic 60.0%
CCCAAAGGGGCTAAGCCGTC+AGG + chr4_2:71814496-71814515 None:intergenic 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr4_2:71817355-71817374 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr4_2:71817356-71817375 None:intergenic 65.0%
GACCCCGAGTAGGCGCCTCA+AGG - chr4_2:71814467-71814486 Msa0620330:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 71813323 71818237 71813323 ID=Msa0620330;Name=Msa0620330
chr4_2 mRNA 71813323 71818237 71813323 ID=Msa0620330-mRNA-1;Parent=Msa0620330;Name=Msa0620330-mRNA-1;_AED=0.17;_eAED=0.17;_QI=231|1|1|1|0.66|0.5|4|261|118
chr4_2 exon 71813323 71813639 71813323 ID=Msa0620330-mRNA-1:exon:21282;Parent=Msa0620330-mRNA-1
chr4_2 exon 71814664 71814834 71814664 ID=Msa0620330-mRNA-1:exon:21281;Parent=Msa0620330-mRNA-1
chr4_2 exon 71817770 71817977 71817770 ID=Msa0620330-mRNA-1:exon:21280;Parent=Msa0620330-mRNA-1
chr4_2 exon 71818085 71818237 71818085 ID=Msa0620330-mRNA-1:exon:21279;Parent=Msa0620330-mRNA-1
chr4_2 five_prime_UTR 71818085 71818237 71818085 ID=Msa0620330-mRNA-1:five_prime_utr;Parent=Msa0620330-mRNA-1
chr4_2 five_prime_UTR 71817900 71817977 71817900 ID=Msa0620330-mRNA-1:five_prime_utr;Parent=Msa0620330-mRNA-1
chr4_2 CDS 71817770 71817899 71817770 ID=Msa0620330-mRNA-1:cds;Parent=Msa0620330-mRNA-1
chr4_2 CDS 71814664 71814834 71814664 ID=Msa0620330-mRNA-1:cds;Parent=Msa0620330-mRNA-1
chr4_2 CDS 71813584 71813639 71813584 ID=Msa0620330-mRNA-1:cds;Parent=Msa0620330-mRNA-1
chr4_2 three_prime_UTR 71813323 71813583 71813323 ID=Msa0620330-mRNA-1:three_prime_utr;Parent=Msa0620330-mRNA-1
Gene Sequence

>Msa0620330

ATGCCGGAAGAAGATTTGGTTGATATCAAGTTTAGGTTATACGATGGTTCTGATATTGGACCCTTTAGGTATTCATCTGCTGCTACTGTTGATATGCTTAAGCAAAGAATTGTCTCTGATTGGCCTAAAGGCAAAACGTTTCTGCCAAAGTCAGCAAATGAAGTGAAATTGATTAGTTCTGGTAAAATATTGGAAAACAACAAGACTGTTGGTCAGTGTAAAGCACCATTTGGTGATATTGCAGGGGGAGTTATAATCATGCATGTTGTTGTACAGCCATCTCTAGCAAAATCTAAGGCTGAGAAGAAGGTTGACGATTCATCCAAGAAGGTTGTCTGTTCTTGTTCTATAATGTGA

Protein sequence

>Msa0620330

MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRIVSDWPKGKTFLPKSANEVKLISSGKILENNKTVGQCKAPFGDIAGGVIIMHVVVQPSLAKSKAEKKVDDSSKKVVCSCSIM*