AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1070840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070840 MtrunA17_Chr7g0253361 99.539 217 1 0 1 217 1 217 1.82e-162 447
Msa1070840 MtrunA17_Chr1g0151811 38.645 251 106 8 12 217 46 293 4.45e-44 149
Msa1070840 MtrunA17_Chr8g0369051 38.528 231 108 9 17 217 27 253 5.43e-32 116
Msa1070840 MtrunA17_Chr6g0484191 27.442 215 113 4 20 195 17 227 8.71e-15 70.9
Msa1070840 MtrunA17_Chr5g0423331 31.959 97 60 1 111 201 123 219 1.36e-11 62.0
Msa1070840 MtrunA17_Chr6g0451821 28.169 213 112 8 20 201 41 243 5.69e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070840 AT1G55340.1 55.856 222 71 9 4 217 3 205 1.52e-69 211
Msa1070840 AT1G55340.2 54.545 220 67 7 4 217 3 195 2.33e-67 206
Msa1070840 AT3G03880.1 54.028 211 70 7 13 217 4 193 2.74e-63 195
Msa1070840 AT4G20300.2 43.949 157 66 5 83 217 196 352 8.97e-30 113
Msa1070840 AT4G20300.1 43.885 139 58 4 83 201 196 334 5.70e-26 103

Find 116 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATAAGCTAATAAATTT+TGG 0.063644 7_2:-67128138 Msa1070840:three_prime_UTR
ACAAAGAATCTAAACTATTT+TGG 0.102004 7_2:-67129066 Msa1070840:three_prime_UTR
TAAGCTTCTTTGGATGATTT+TGG 0.165257 7_2:+67129510 None:intergenic
AATGGGATTGAACTCTTTAT+AGG 0.166067 7_2:+67128079 None:intergenic
TCATGTTTATCATTTCAAAA+TGG 0.220145 7_2:+67127983 None:intergenic
TGAGGCATAGATCTTAAATT+TGG 0.232864 7_2:-67130699 Msa1070840:five_prime_UTR
ATGATATACCAAAGTCTTAA+AGG 0.232922 7_2:+67130669 None:intergenic
GTACTCTTCAGTTGAAATTA+TGG 0.233378 7_2:+67128460 None:intergenic
AACTTACCAATAAGCTTCTT+TGG 0.237998 7_2:+67129500 None:intergenic
CTGTTGCCTTACATGCTCTT+TGG 0.238559 7_2:+67130543 None:intergenic
AATCATCCAAAGAAGCTTAT+TGG 0.258024 7_2:-67129506 Msa1070840:intron
GGCCATGAATTGTTTGGATT+TGG 0.268749 7_2:+67127908 None:intergenic
CTTCATTGATTTGATTGAAA+TGG 0.283720 7_2:+67128932 None:intergenic
ATCAGAAGAAAGCTTAATTC+TGG 0.302031 7_2:-67130425 Msa1070840:CDS
CATTTCAAAATGGGAGAATC+AGG 0.307895 7_2:+67127993 None:intergenic
ATTGAATCTTTCAACTTTCC+CGG 0.313674 7_2:-67127766 Msa1070840:three_prime_UTR
AGGAAGCTTACAACCTTTCA+TGG 0.340391 7_2:+67129552 None:intergenic
AAGAGATCTTGATAATAAAA+TGG 0.364551 7_2:-67128357 Msa1070840:three_prime_UTR
GTCAAGAGAGATATGAAGTT+AGG 0.367836 7_2:-67129311 Msa1070840:CDS
TTTGGATGTAATAAATCATA+TGG 0.369892 7_2:-67128598 Msa1070840:three_prime_UTR
GCCATGAATTGTTTGGATTT+GGG 0.370840 7_2:+67127909 None:intergenic
CATGTTTATCATTTCAAAAT+GGG 0.379197 7_2:+67127984 None:intergenic
AAATGATAAACATGATGATC+TGG 0.381344 7_2:-67127975 Msa1070840:three_prime_UTR
AACAACCTTGTGAGACGATT+AGG 0.386278 7_2:+67130335 None:intergenic
TCTTCTTGCAGTGGGGAAAC+AGG 0.395699 7_2:-67130511 Msa1070840:CDS
TATGCAAATATTTGAGAGGT+TGG 0.398405 7_2:-67129102 Msa1070840:three_prime_UTR
TGAAGTTTCAATTTCAAAAG+AGG 0.407450 7_2:-67128699 Msa1070840:three_prime_UTR
TGCAATGGCCATGAATTGTT+TGG 0.413077 7_2:+67127902 None:intergenic
CGGATTTCAACTAGGCTTAA+CGG 0.415814 7_2:-67130455 Msa1070840:CDS
TCAAGAGAGATATGAAGTTA+GGG 0.417350 7_2:-67129310 Msa1070840:CDS
TGTTTACAGTTGGTAAGTCC+TGG 0.420464 7_2:-67129354 Msa1070840:intron
CCCATAGCCTTCAATCCTCT+TGG 0.424567 7_2:+67129160 None:intergenic
AAACCCTCTTTAATTGCAAA+AGG 0.427755 7_2:+67128053 None:intergenic
GAGGAACCAAAGAGCATGTA+AGG 0.432240 7_2:-67130549 Msa1070840:CDS
ACCCAAATCCAAACAATTCA+TGG 0.437111 7_2:-67127910 Msa1070840:three_prime_UTR
AAAACAAAACTTGGTGGGAA+TGG 0.441648 7_2:+67128810 None:intergenic
GAAGCAACCCTTTAAGACTT+TGG 0.451381 7_2:-67130677 Msa1070840:intron
GGAGTGGAGAATCATCGTTC+TGG 0.453670 7_2:-67130404 Msa1070840:CDS
GAAAAGAAAATATGATGAAG+AGG 0.458502 7_2:+67128732 None:intergenic
GGCCGGAGATAACAGAAAAT+CGG 0.460576 7_2:-67129734 Msa1070840:CDS
TGATATACCAAAGTCTTAAA+GGG 0.462098 7_2:+67130670 None:intergenic
AAATCTGCAGTCAAATCATC+TGG 0.462390 7_2:+67127947 None:intergenic
ATTGAATCTTTCAACTTTCG+CGG 0.463660 7_2:-67127839 Msa1070840:three_prime_UTR
GAAGAACTGAAATGTACCTT+TGG 0.470027 7_2:-67128616 Msa1070840:three_prime_UTR
TTGAAAACAATTAAAGAGAT+GGG 0.475897 7_2:-67128554 Msa1070840:three_prime_UTR
CCAAGAGGATTGAAGGCTAT+GGG 0.481069 7_2:-67129160 Msa1070840:CDS
GCAGAGGCCAAGAGGATTGA+AGG 0.486507 7_2:-67129167 Msa1070840:intron
GATTTGGGTTCCCTACTGTC+AGG 0.486865 7_2:+67127924 None:intergenic
CTTGAAAACAATTAAAGAGA+TGG 0.488877 7_2:-67128555 Msa1070840:three_prime_UTR
CTTTCTTCTAGTTAAGCACT+AGG 0.491872 7_2:-67128383 Msa1070840:three_prime_UTR
TCTTTCAACTTTCGCGGCCA+CGG 0.492000 7_2:-67127833 Msa1070840:three_prime_UTR
TTGATTTGATTGAAATGGAT+CGG 0.493315 7_2:+67128937 None:intergenic
GCCAAGAGGATTGAAGGCTA+TGG 0.494932 7_2:-67129161 Msa1070840:CDS
AACATCGCAAGTGCCTTTAC+CGG 0.498467 7_2:+67129657 None:intergenic
AAGATCCTCGGATTTCAACT+AGG 0.502257 7_2:-67130463 Msa1070840:CDS
ACCAGAGTTCTTCTTGCAGT+GGG 0.504536 7_2:-67130519 Msa1070840:CDS
CCCCACTGCAAGAAGAACTC+TGG 0.514893 7_2:+67130518 None:intergenic
TCAGCAGAGGACACCGGTAA+AGG 0.516208 7_2:-67129670 Msa1070840:CDS
GGAAGCGTTTGAGATGTGTA+AGG 0.516835 7_2:-67130490 Msa1070840:CDS
GGAGAAGAAAAGTAACAAGA+AGG 0.520874 7_2:-67129289 Msa1070840:intron
GAGAGAGTAATGTAAAGCTT+AGG 0.521687 7_2:+67129604 None:intergenic
ATTGAAGGCTATGGGGAGTG+TGG 0.522393 7_2:-67129152 Msa1070840:CDS
GAAATAAAACAAAACTTGGT+GGG 0.530461 7_2:+67128805 None:intergenic
GGCACTTGCGATGTTATCAA+TGG 0.530662 7_2:-67129649 Msa1070840:CDS
ACATTTCAGTTCTTCAATGT+CGG 0.531555 7_2:+67128624 None:intergenic
CTGCAGATTTCCTGACAGTA+GGG 0.531993 7_2:-67127934 Msa1070840:three_prime_UTR
TAACAGAAAATCGGCATCAC+CGG 0.532579 7_2:-67129725 Msa1070840:CDS
ATATCAGTCAACCATGCTCC+AGG 0.532665 7_2:+67129336 None:intergenic
TGGATATATTTGCCTGCTTG+AGG 0.538629 7_2:+67128480 None:intergenic
AAAACTGAAACAGAGTTTGA+GGG 0.540597 7_2:+67130987 None:intergenic
GAGAGAAATAAAACAAAACT+TGG 0.541015 7_2:+67128801 None:intergenic
AAAATCGGCATCACCGGAGA+AGG 0.542456 7_2:-67129719 Msa1070840:CDS
TTGGTATGCAGGAATTCCGA+TGG 0.546689 7_2:-67129775 Msa1070840:intron
CAATTAAAGAGGGTTTATTG+AGG 0.547313 7_2:-67128046 Msa1070840:three_prime_UTR
TAGTATCGATCTTCCTTCTC+CGG 0.549815 7_2:+67129706 None:intergenic
AATTTGTAGCGTCTGTGTCA+CGG 0.551647 7_2:+67127786 None:intergenic
AAAAGAAAATATGATGAAGA+GGG 0.560105 7_2:+67128733 None:intergenic
AGAGGGTTGCTGAAATATGA+AGG 0.561071 7_2:+67128750 None:intergenic
ACTATTCTACGACCGGCGGC+CGG 0.561495 7_2:-67129751 Msa1070840:CDS
ACTGCAGATTTCCTGACAGT+AGG 0.561923 7_2:-67127935 Msa1070840:three_prime_UTR
AACCAGAGTTCTTCTTGCAG+TGG 0.563420 7_2:-67130520 Msa1070840:CDS
AATTTGTAGCTTCTGCCTCA+CGG 0.564938 7_2:+67127859 None:intergenic
CGATGGAACTATTCTACGAC+CGG 0.568292 7_2:-67129758 Msa1070840:CDS
AGTTGGTAAGTCCTGGAGCA+TGG 0.569217 7_2:-67129347 Msa1070840:CDS
TTTGGGAAGATGGAAGATGA+TGG 0.573120 7_2:-67129048 Msa1070840:three_prime_UTR
TTTCTGTTATCTCCGGCCGC+CGG 0.574206 7_2:+67129739 None:intergenic
AATGATAAACATGATGATCT+GGG 0.575220 7_2:-67127974 Msa1070840:three_prime_UTR
AGCGTCTGTGTCACGGCTTG+CGG 0.577860 7_2:+67127793 None:intergenic
AGAAATAAAACAAAACTTGG+TGG 0.578938 7_2:+67128804 None:intergenic
ATATGATTTATTACATCCAA+AGG 0.579375 7_2:+67128600 None:intergenic
ATTTCAAAATGGGAGAATCA+GGG 0.581880 7_2:+67127994 None:intergenic
GATTAATGTAAGCCTCAAGC+AGG 0.593489 7_2:-67128492 Msa1070840:three_prime_UTR
GTACGAGGCTAAATAAAGCA+TGG 0.597222 7_2:-67128441 Msa1070840:three_prime_UTR
GTGTAAGGGTGAAAGATCCT+CGG 0.610227 7_2:-67130475 Msa1070840:CDS
TAGACAAAGTAGCTTACATG+TGG 0.613840 7_2:-67128222 Msa1070840:three_prime_UTR
TTATTATGCAAATATTTGAG+AGG 0.616149 7_2:-67129106 Msa1070840:three_prime_UTR
AAGAAAGCTTAATTCTGGAG+TGG 0.623077 7_2:-67130420 Msa1070840:CDS
GTCACTGAACTTAGACCATG+TGG 0.624176 7_2:-67128323 Msa1070840:three_prime_UTR
CGGTCGTAGAATAGTTCCAT+CGG 0.626224 7_2:+67129759 None:intergenic
TAGAAATGGAGACAGAAGAG+AGG 0.628747 7_2:-67130568 Msa1070840:exon
AGATCGATACTACACGACGA+GGG 0.631631 7_2:-67129695 Msa1070840:CDS
TGAAAACAATTAAAGAGATG+GGG 0.635459 7_2:-67128553 Msa1070840:three_prime_UTR
GCTAAATAAAGCATGGATCG+TGG 0.641350 7_2:-67128434 Msa1070840:three_prime_UTR
AGTCTAAAGCAAGTTTGCAA+TGG 0.643883 7_2:+67127887 None:intergenic
GATCGATACTACACGACGAG+GGG 0.647579 7_2:-67129694 Msa1070840:CDS
GAAGCGTTTGAGATGTGTAA+GGG 0.650307 7_2:-67130489 Msa1070840:CDS
CAAGAGGATTGAAGGCTATG+GGG 0.656812 7_2:-67129159 Msa1070840:CDS
CCAGAGTTCTTCTTGCAGTG+GGG 0.679245 7_2:-67130518 Msa1070840:CDS
AACAACCTAATCGTCTCACA+AGG 0.681018 7_2:-67130340 Msa1070840:intron
TGGAACTATTCTACGACCGG+CGG 0.694045 7_2:-67129755 Msa1070840:CDS
AATTTCAACTGAAGAGTACG+AGG 0.696522 7_2:-67128456 Msa1070840:three_prime_UTR
AAGATCGATACTACACGACG+AGG 0.699452 7_2:-67129696 Msa1070840:CDS
TTAAGCCTAGTTGAAATCCG+AGG 0.705168 7_2:+67130458 None:intergenic
ATTTCAACTAGGCTTAACGG+TGG 0.734742 7_2:-67130452 Msa1070840:CDS
TATAAATCTAGACACCCACA+TGG 0.741702 7_2:+67128308 None:intergenic
TCACTGAACTTAGACCATGT+GGG 0.743602 7_2:-67128322 Msa1070840:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATGTTGTTTTTATTA+TGG - chr7_2:67129329-67129348 Msa1070840:CDS 10.0%
!! ATTAAGAGATAAAATAAAAA+AGG + chr7_2:67129553-67129572 None:intergenic 10.0%
!! CTTACAATGATAAAAAAAAT+TGG + chr7_2:67127924-67127943 None:intergenic 15.0%
!!! ATTTTGAGTAAAAGAAAAAA+TGG - chr7_2:67128636-67128655 Msa1070840:three_prime_UTR 15.0%
!!! AAAGAAAAAATGGTTTTTTT+TGG - chr7_2:67128646-67128665 Msa1070840:three_prime_UTR 15.0%
!!! ATTTTTTATGTGATTTTGAT+TGG - chr7_2:67128974-67128993 Msa1070840:three_prime_UTR 15.0%
!!! TTGTTTTTATTATGGTTAAT+TGG - chr7_2:67129337-67129356 Msa1070840:CDS 15.0%
!!! TGTTTTTATTATGGTTAATT+GGG - chr7_2:67129338-67129357 Msa1070840:CDS 15.0%
!!! CAAAAAAAAACTGTTTTTTG+AGG - chr7_2:67128060-67128079 Msa1070840:three_prime_UTR 20.0%
!!! TATGTTTTTTGTTGTAGAAA+TGG - chr7_2:67128195-67128214 Msa1070840:three_prime_UTR 20.0%
!! AATACAAGTTTATATCATCT+GGG + chr7_2:67128868-67128887 None:intergenic 20.0%
!! TTATTATGCAAATATTTGAG+AGG - chr7_2:67129671-67129690 Msa1070840:CDS 20.0%
!!! ACAAAGAATCTAAACTATTT+TGG - chr7_2:67129711-67129730 Msa1070840:CDS 20.0%
!!! CAAAGAATCTAAACTATTTT+GGG - chr7_2:67129712-67129731 Msa1070840:CDS 20.0%
!!! ATCTCTCTTATTTTACTTTA+TGG - chr7_2:67129914-67129933 Msa1070840:intron 20.0%
!! AAAAGAAAATATGATGAAGA+GGG + chr7_2:67130047-67130066 None:intergenic 20.0%
!! ATATGATTTATTACATCCAA+AGG + chr7_2:67130180-67130199 None:intergenic 20.0%
!! TTTGGATGTAATAAATCATA+TGG - chr7_2:67130179-67130198 Msa1070840:intron 20.0%
!! TTGAAAACAATTAAAGAGAT+GGG - chr7_2:67130223-67130242 Msa1070840:intron 20.0%
!!! AAGAGATCTTGATAATAAAA+TGG - chr7_2:67130420-67130439 Msa1070840:CDS 20.0%
!!! CACAATAAGCTAATAAATTT+TGG - chr7_2:67130639-67130658 Msa1070840:intron 20.0%
!! TTAATTGCAAAAGGAAAAAT+GGG + chr7_2:67130718-67130737 None:intergenic 20.0%
!! TTTAATTGCAAAAGGAAAAA+TGG + chr7_2:67130719-67130738 None:intergenic 20.0%
!! CATGTTTATCATTTCAAAAT+GGG + chr7_2:67130796-67130815 None:intergenic 20.0%
!! TCATGTTTATCATTTCAAAA+TGG + chr7_2:67130797-67130816 None:intergenic 20.0%
! TGATATACCAAAGTCTTAAA+GGG + chr7_2:67128110-67128129 None:intergenic 25.0%
! ATGATATACCAAAGTCTTAA+AGG + chr7_2:67128111-67128130 None:intergenic 25.0%
! CCACAATAGATTTAGATAAA+GGG + chr7_2:67128166-67128185 None:intergenic 25.0%
! ACCACAATAGATTTAGATAA+AGG + chr7_2:67128167-67128186 None:intergenic 25.0%
! TTGAAAACTACCATAACAAA+TGG - chr7_2:67128463-67128482 Msa1070840:three_prime_UTR 25.0%
!!! AAATCCAGTTTTTTTTTCAG+AGG + chr7_2:67128538-67128557 None:intergenic 25.0%
!! CTGAAAAAAAAACTGGATTT+TGG - chr7_2:67128538-67128557 Msa1070840:three_prime_UTR 25.0%
!!! TTTTGGTTTGTGAAAAATGA+TGG - chr7_2:67128555-67128574 Msa1070840:three_prime_UTR 25.0%
!! CTTTTACTCAAAATCAAACA+AGG + chr7_2:67128630-67128649 None:intergenic 25.0%
!!! GTAATGATGTTGTTTTCATT+TGG - chr7_2:67128692-67128711 Msa1070840:three_prime_UTR 25.0%
!!! TTTTCATTTGGTTGGTTAAT+GGG - chr7_2:67128704-67128723 Msa1070840:three_prime_UTR 25.0%
! TGAAGATAATCATAAAAGAG+AGG - chr7_2:67128739-67128758 Msa1070840:three_prime_UTR 25.0%
! GAAGATAATCATAAAAGAGA+GGG - chr7_2:67128740-67128759 Msa1070840:three_prime_UTR 25.0%
! GAATACAAACACTGAAAAAA+TGG + chr7_2:67128774-67128793 None:intergenic 25.0%
! GAATACAAGTTTATATCATC+TGG + chr7_2:67128869-67128888 None:intergenic 25.0%
!!! TTGATGGATTTTTTTTCAGA+AGG - chr7_2:67128895-67128914 Msa1070840:three_prime_UTR 25.0%
!!! TGATGGATTTTTTTTCAGAA+GGG - chr7_2:67128896-67128915 Msa1070840:three_prime_UTR 25.0%
!!! ATTTTTTTTCAGAAGGGTAT+TGG - chr7_2:67128902-67128921 Msa1070840:three_prime_UTR 25.0%
! TTATTATGGTTAATTGGGTT+TGG - chr7_2:67129343-67129362 Msa1070840:CDS 25.0%
!! TTGATTTGATTGAAATGGAT+CGG + chr7_2:67129843-67129862 None:intergenic 25.0%
!!! CTTCATTGATTTGATTGAAA+TGG + chr7_2:67129848-67129867 None:intergenic 25.0%
! GAAATAAAACAAAACTTGGT+GGG + chr7_2:67129975-67129994 None:intergenic 25.0%
! AGAAATAAAACAAAACTTGG+TGG + chr7_2:67129976-67129995 None:intergenic 25.0%
! GAGAGAAATAAAACAAAACT+TGG + chr7_2:67129979-67129998 None:intergenic 25.0%
! GAAAAGAAAATATGATGAAG+AGG + chr7_2:67130048-67130067 None:intergenic 25.0%
! TGAAGTTTCAATTTCAAAAG+AGG - chr7_2:67130078-67130097 Msa1070840:intron 25.0%
! CTTGAAAACAATTAAAGAGA+TGG - chr7_2:67130222-67130241 Msa1070840:intron 25.0%
! TGAAAACAATTAAAGAGATG+GGG - chr7_2:67130224-67130243 Msa1070840:intron 25.0%
! TGAAAAAACCAATTAAGGAA+AGG - chr7_2:67130249-67130268 Msa1070840:intron 25.0%
!! CATATTTTCCTTTCCTTAAT+TGG + chr7_2:67130260-67130279 None:intergenic 25.0%
! CTTAAGCTAAAAATAGCAAT+TGG + chr7_2:67130527-67130546 None:intergenic 25.0%
!!! CAATTGCTATTTTTAGCTTA+AGG - chr7_2:67130525-67130544 Msa1070840:CDS 25.0%
!! TAAATTTTGGATTTACGTTC+TGG - chr7_2:67130652-67130671 Msa1070840:intron 25.0%
!! TTTTCCTTTTGCAATTAAAG+AGG - chr7_2:67130720-67130739 Msa1070840:five_prime_UTR 25.0%
!! TTTCCTTTTGCAATTAAAGA+GGG - chr7_2:67130721-67130740 Msa1070840:five_prime_UTR 25.0%
! AAATGATAAACATGATGATC+TGG - chr7_2:67130802-67130821 Msa1070840:intron 25.0%
! AATGATAAACATGATGATCT+GGG - chr7_2:67130803-67130822 Msa1070840:intron 25.0%
AAAACTGAAACAGAGTTTGA+GGG + chr7_2:67127793-67127812 None:intergenic 30.0%
AAAAACTGAAACAGAGTTTG+AGG + chr7_2:67127794-67127813 None:intergenic 30.0%
ATTGGATTCAGAGAAGAAAA+AGG + chr7_2:67127906-67127925 None:intergenic 30.0%
TGAGGCATAGATCTTAAATT+TGG - chr7_2:67128078-67128097 Msa1070840:three_prime_UTR 30.0%
CCCTTTATCTAAATCTATTG+TGG - chr7_2:67128163-67128182 Msa1070840:three_prime_UTR 30.0%
ATCAGAAGAAAGCTTAATTC+TGG - chr7_2:67128352-67128371 Msa1070840:three_prime_UTR 30.0%
AGATGAAGATGAAGATAAAG+AGG + chr7_2:67128502-67128521 None:intergenic 30.0%
!!! TGATGTTGTTTTCATTTGGT+TGG - chr7_2:67128696-67128715 Msa1070840:three_prime_UTR 30.0%
!! GTTTTCATTTGGTTGGTTAA+TGG - chr7_2:67128703-67128722 Msa1070840:three_prime_UTR 30.0%
! TTTCATTTGGTTGGTTAATG+GGG - chr7_2:67128705-67128724 Msa1070840:three_prime_UTR 30.0%
ACTTGTATTCTGTTCTTTGA+TGG - chr7_2:67128879-67128898 Msa1070840:three_prime_UTR 30.0%
!!! GTGATTTTGATTGGAAGTTT+TGG - chr7_2:67128983-67129002 Msa1070840:three_prime_UTR 30.0%
! TAAGCTTCTTTGGATGATTT+TGG + chr7_2:67129270-67129289 None:intergenic 30.0%
AATCATCCAAAGAAGCTTAT+TGG - chr7_2:67129271-67129290 Msa1070840:intron 30.0%
AACTTACCAATAAGCTTCTT+TGG + chr7_2:67129280-67129299 None:intergenic 30.0%
TCAAGAGAGATATGAAGTTA+GGG - chr7_2:67129467-67129486 Msa1070840:intron 30.0%
AAAAGTAACAAGAAGGTTAG+TGG - chr7_2:67129495-67129514 Msa1070840:intron 30.0%
TATGCAAATATTTGAGAGGT+TGG - chr7_2:67129675-67129694 Msa1070840:CDS 30.0%
!! TCTAAACTATTTTGGGAAGA+TGG - chr7_2:67129719-67129738 Msa1070840:CDS 30.0%
ACATTTCAGTTCTTCAATGT+CGG + chr7_2:67130156-67130175 None:intergenic 30.0%
GGGTATGAAAAAACCAATTA+AGG - chr7_2:67130244-67130263 Msa1070840:intron 30.0%
GTACTCTTCAGTTGAAATTA+TGG + chr7_2:67130320-67130339 None:intergenic 30.0%
AATGGGATTGAACTCTTTAT+AGG + chr7_2:67130701-67130720 None:intergenic 30.0%
AAACCCTCTTTAATTGCAAA+AGG + chr7_2:67130727-67130746 None:intergenic 30.0%
CAATTAAAGAGGGTTTATTG+AGG - chr7_2:67130731-67130750 Msa1070840:five_prime_UTR 30.0%
! TTATTGAGGTTTCAGTTTTC+TGG - chr7_2:67130745-67130764 Msa1070840:five_prime_UTR 30.0%
ATTTCAAAATGGGAGAATCA+GGG + chr7_2:67130786-67130805 None:intergenic 30.0%
ATTGAATCTTTCAACTTTCG+CGG - chr7_2:67130938-67130957 Msa1070840:five_prime_UTR 30.0%
ATTGAATCTTTCAACTTTCC+CGG - chr7_2:67131011-67131030 Msa1070840:five_prime_UTR 30.0%
GAAGAAGATGAAGAAGAAGA+AGG + chr7_2:67127947-67127966 None:intergenic 35.0%
! AAGAAAGCTTAATTCTGGAG+TGG - chr7_2:67128357-67128376 Msa1070840:three_prime_UTR 35.0%
! CTGAGAAGATCCATTTGTTA+TGG + chr7_2:67128476-67128495 None:intergenic 35.0%
TCATCTTCATCTTCCTTGTT+TGG - chr7_2:67128510-67128529 Msa1070840:three_prime_UTR 35.0%
!! TTTTTCAGAGGAACCAAACA+AGG + chr7_2:67128526-67128545 None:intergenic 35.0%
! GGTTCCTCTGAAAAAAAAAC+TGG - chr7_2:67128531-67128550 Msa1070840:three_prime_UTR 35.0%
GAGAAGAAAAAGCTCTTGTT+TGG - chr7_2:67129150-67129169 Msa1070840:CDS 35.0%
GAGAGAGTAATGTAAAGCTT+AGG + chr7_2:67129176-67129195 None:intergenic 35.0%
! GAAGATTTTCTTGCCATGAA+AGG - chr7_2:67129212-67129231 Msa1070840:intron 35.0%
!! ATGATTTTGGCCCTCTTTTT+GGG + chr7_2:67129257-67129276 None:intergenic 35.0%
ATGTTGTCCACATGTTTGTT+TGG - chr7_2:67129396-67129415 Msa1070840:intron 35.0%
ACAAACACCAAACAAACATG+TGG + chr7_2:67129406-67129425 None:intergenic 35.0%
!! GTTTGGTGTTTGTTTACAGT+TGG - chr7_2:67129413-67129432 Msa1070840:intron 35.0%
GTCAAGAGAGATATGAAGTT+AGG - chr7_2:67129466-67129485 Msa1070840:intron 35.0%
GGAGAAGAAAAGTAACAAGA+AGG - chr7_2:67129488-67129507 Msa1070840:intron 35.0%
!!! TTTTTGGGTTTTTGATGCAG+AGG - chr7_2:67129594-67129613 Msa1070840:CDS 35.0%
! AAAACAAAACTTGGTGGGAA+TGG + chr7_2:67129970-67129989 None:intergenic 35.0%
GAAGAACTGAAATGTACCTT+TGG - chr7_2:67130161-67130180 Msa1070840:intron 35.0%
! AATTTCAACTGAAGAGTACG+AGG - chr7_2:67130321-67130340 Msa1070840:intron 35.0%
! CTTTCTTCTAGTTAAGCACT+AGG - chr7_2:67130394-67130413 Msa1070840:CDS 35.0%
TATAAATCTAGACACCCACA+TGG + chr7_2:67130472-67130491 None:intergenic 35.0%
TAGACAAAGTAGCTTACATG+TGG - chr7_2:67130555-67130574 Msa1070840:CDS 35.0%
CATTTCAAAATGGGAGAATC+AGG + chr7_2:67130787-67130806 None:intergenic 35.0%
AAATCTGCAGTCAAATCATC+TGG + chr7_2:67130833-67130852 None:intergenic 35.0%
ACCCAAATCCAAACAATTCA+TGG - chr7_2:67130867-67130886 Msa1070840:intron 35.0%
GCCATGAATTGTTTGGATTT+GGG + chr7_2:67130871-67130890 None:intergenic 35.0%
! AGTCTAAAGCAAGTTTGCAA+TGG + chr7_2:67130893-67130912 None:intergenic 35.0%
!! GAAGCAACCCTTTAAGACTT+TGG - chr7_2:67128100-67128119 Msa1070840:three_prime_UTR 40.0%
TAGAAATGGAGACAGAAGAG+AGG - chr7_2:67128209-67128228 Msa1070840:three_prime_UTR 40.0%
! GAAGCGTTTGAGATGTGTAA+GGG - chr7_2:67128288-67128307 Msa1070840:three_prime_UTR 40.0%
AAGATCCTCGGATTTCAACT+AGG - chr7_2:67128314-67128333 Msa1070840:three_prime_UTR 40.0%
TTAAGCCTAGTTGAAATCCG+AGG + chr7_2:67128322-67128341 None:intergenic 40.0%
CGGATTTCAACTAGGCTTAA+CGG - chr7_2:67128322-67128341 Msa1070840:three_prime_UTR 40.0%
ATTTCAACTAGGCTTAACGG+TGG - chr7_2:67128325-67128344 Msa1070840:three_prime_UTR 40.0%
AACAACCTAATCGTCTCACA+AGG - chr7_2:67128437-67128456 Msa1070840:three_prime_UTR 40.0%
AACAACCTTGTGAGACGATT+AGG + chr7_2:67128445-67128464 None:intergenic 40.0%
!! GATTGGAAGTTTTGGTATGC+AGG - chr7_2:67128991-67129010 Msa1070840:three_prime_UTR 40.0%
!!! TGCCGATTTTCTGTTATCTC+CGG + chr7_2:67129048-67129067 None:intergenic 40.0%
TAACAGAAAATCGGCATCAC+CGG - chr7_2:67129052-67129071 Msa1070840:three_prime_UTR 40.0%
!! TAGTATCGATCTTCCTTCTC+CGG + chr7_2:67129074-67129093 None:intergenic 40.0%
AGGAAGCTTACAACCTTTCA+TGG + chr7_2:67129228-67129247 None:intergenic 40.0%
TTCCTCAAAGACCCAAAAAG+AGG - chr7_2:67129243-67129262 Msa1070840:intron 40.0%
TCCTCAAAGACCCAAAAAGA+GGG - chr7_2:67129244-67129263 Msa1070840:intron 40.0%
!! GATGATTTTGGCCCTCTTTT+TGG + chr7_2:67129258-67129277 None:intergenic 40.0%
!! TGTTTACAGTTGGTAAGTCC+TGG - chr7_2:67129423-67129442 Msa1070840:intron 40.0%
ACAAGAAGGTTAGTGGTTGT+TGG - chr7_2:67129502-67129521 Msa1070840:intron 40.0%
TTTGGGAAGATGGAAGATGA+TGG - chr7_2:67129729-67129748 Msa1070840:CDS 40.0%
AGAGGGTTGCTGAAATATGA+AGG + chr7_2:67130030-67130049 None:intergenic 40.0%
! TTTTTGCAAAGGTGGGTCAT+AGG + chr7_2:67130128-67130147 None:intergenic 40.0%
GACCCACCTTTGCAAAAATT+TGG - chr7_2:67130130-67130149 Msa1070840:intron 40.0%
! GGCCAAATTTTTGCAAAGGT+GGG + chr7_2:67130135-67130154 None:intergenic 40.0%
! TGTCGGCCAAATTTTTGCAA+AGG + chr7_2:67130139-67130158 None:intergenic 40.0%
GATTAATGTAAGCCTCAAGC+AGG - chr7_2:67130285-67130304 Msa1070840:intron 40.0%
TGGATATATTTGCCTGCTTG+AGG + chr7_2:67130300-67130319 None:intergenic 40.0%
GTACGAGGCTAAATAAAGCA+TGG - chr7_2:67130336-67130355 Msa1070840:intron 40.0%
GCTAAATAAAGCATGGATCG+TGG - chr7_2:67130343-67130362 Msa1070840:CDS 40.0%
TCACTGAACTTAGACCATGT+GGG - chr7_2:67130455-67130474 Msa1070840:CDS 40.0%
GGCCATGAATTGTTTGGATT+TGG + chr7_2:67130872-67130891 None:intergenic 40.0%
TGCAATGGCCATGAATTGTT+TGG + chr7_2:67130878-67130897 None:intergenic 40.0%
AATTTGTAGCTTCTGCCTCA+CGG + chr7_2:67130921-67130940 None:intergenic 40.0%
!! TCTAAAGCAAGTTTTCACCG+TGG + chr7_2:67130964-67130983 None:intergenic 40.0%
AATTTGTAGCGTCTGTGTCA+CGG + chr7_2:67130994-67131013 None:intergenic 40.0%
CATTGTTCTCTGCTGTGTTC+TGG - chr7_2:67128128-67128147 Msa1070840:three_prime_UTR 45.0%
! GAGGAACCAAAGAGCATGTA+AGG - chr7_2:67128228-67128247 Msa1070840:three_prime_UTR 45.0%
CTGTTGCCTTACATGCTCTT+TGG + chr7_2:67128237-67128256 None:intergenic 45.0%
AACCAGAGTTCTTCTTGCAG+TGG - chr7_2:67128257-67128276 Msa1070840:three_prime_UTR 45.0%
ACCAGAGTTCTTCTTGCAGT+GGG - chr7_2:67128258-67128277 Msa1070840:three_prime_UTR 45.0%
!! GGAAGCGTTTGAGATGTGTA+AGG - chr7_2:67128287-67128306 Msa1070840:three_prime_UTR 45.0%
GTGTAAGGGTGAAAGATCCT+CGG - chr7_2:67128302-67128321 Msa1070840:three_prime_UTR 45.0%
TTGGTATGCAGGAATTCCGA+TGG - chr7_2:67129002-67129021 Msa1070840:three_prime_UTR 45.0%
CGGTCGTAGAATAGTTCCAT+CGG + chr7_2:67129021-67129040 None:intergenic 45.0%
CGATGGAACTATTCTACGAC+CGG - chr7_2:67129019-67129038 Msa1070840:three_prime_UTR 45.0%
GGCCGGAGATAACAGAAAAT+CGG - chr7_2:67129043-67129062 Msa1070840:three_prime_UTR 45.0%
AAGATCGATACTACACGACG+AGG - chr7_2:67129081-67129100 Msa1070840:three_prime_UTR 45.0%
AGATCGATACTACACGACGA+GGG - chr7_2:67129082-67129101 Msa1070840:three_prime_UTR 45.0%
AACATCGCAAGTGCCTTTAC+CGG + chr7_2:67129123-67129142 None:intergenic 45.0%
GGCACTTGCGATGTTATCAA+TGG - chr7_2:67129128-67129147 Msa1070840:exon 45.0%
ATATCAGTCAACCATGCTCC+AGG + chr7_2:67129444-67129463 None:intergenic 45.0%
! TTTTTGATGCAGAGGCCAAG+AGG - chr7_2:67129602-67129621 Msa1070840:CDS 45.0%
CCAAGAGGATTGAAGGCTAT+GGG - chr7_2:67129617-67129636 Msa1070840:CDS 45.0%
CAAGAGGATTGAAGGCTATG+GGG - chr7_2:67129618-67129637 Msa1070840:CDS 45.0%
! CGGCCAAATTTTTGCAAAGG+TGG + chr7_2:67130136-67130155 None:intergenic 45.0%
GTCACTGAACTTAGACCATG+TGG - chr7_2:67130454-67130473 Msa1070840:CDS 45.0%
ACTGCAGATTTCCTGACAGT+AGG - chr7_2:67130842-67130861 Msa1070840:intron 45.0%
CTGCAGATTTCCTGACAGTA+GGG - chr7_2:67130843-67130862 Msa1070840:intron 45.0%
!!! ATTTTTCTAAATATAATTTT+TGG - chr7_2:67129578-67129597 Msa1070840:CDS 5.0%
!!! TTTTTCTAAATATAATTTTT+GGG - chr7_2:67129579-67129598 Msa1070840:CDS 5.0%
CCAGAGTTCTTCTTGCAGTG+GGG - chr7_2:67128259-67128278 Msa1070840:three_prime_UTR 50.0%
TCTTCTTGCAGTGGGGAAAC+AGG - chr7_2:67128266-67128285 Msa1070840:three_prime_UTR 50.0%
GGAGTGGAGAATCATCGTTC+TGG - chr7_2:67128373-67128392 Msa1070840:three_prime_UTR 50.0%
TGGAACTATTCTACGACCGG+CGG - chr7_2:67129022-67129041 Msa1070840:three_prime_UTR 50.0%
AAAATCGGCATCACCGGAGA+AGG - chr7_2:67129058-67129077 Msa1070840:three_prime_UTR 50.0%
GATCGATACTACACGACGAG+GGG - chr7_2:67129083-67129102 Msa1070840:three_prime_UTR 50.0%
ATCGATACTACACGACGAGG+GGG - chr7_2:67129084-67129103 Msa1070840:three_prime_UTR 50.0%
!!! GCCCTCTTTTTGGGTCTTTG+AGG + chr7_2:67129248-67129267 None:intergenic 50.0%
!! AGTTGGTAAGTCCTGGAGCA+TGG - chr7_2:67129430-67129449 Msa1070840:intron 50.0%
GCCAAGAGGATTGAAGGCTA+TGG - chr7_2:67129616-67129635 Msa1070840:CDS 50.0%
CCCATAGCCTTCAATCCTCT+TGG + chr7_2:67129620-67129639 None:intergenic 50.0%
ATTGAAGGCTATGGGGAGTG+TGG - chr7_2:67129625-67129644 Msa1070840:CDS 50.0%
! GATTTGGGTTCCCTACTGTC+AGG + chr7_2:67130856-67130875 None:intergenic 50.0%
TCTTTCAACTTTCGCGGCCA+CGG - chr7_2:67130944-67130963 Msa1070840:five_prime_UTR 50.0%
! GGTCGAAAGCAGTTTTTGCC+GGG + chr7_2:67131032-67131051 None:intergenic 50.0%
! CGGTCGAAAGCAGTTTTTGC+CGG + chr7_2:67131033-67131052 None:intergenic 50.0%
CCCCACTGCAAGAAGAACTC+TGG + chr7_2:67128262-67128281 None:intergenic 55.0%
TTTCTGTTATCTCCGGCCGC+CGG + chr7_2:67129041-67129060 None:intergenic 55.0%
TCAGCAGAGGACACCGGTAA+AGG - chr7_2:67129107-67129126 Msa1070840:three_prime_UTR 55.0%
GCAGAGGCCAAGAGGATTGA+AGG - chr7_2:67129610-67129629 Msa1070840:CDS 55.0%
ACTATTCTACGACCGGCGGC+CGG - chr7_2:67129026-67129045 Msa1070840:three_prime_UTR 60.0%
! GCTTTAGACTGCGAGCCGTG+AGG - chr7_2:67130903-67130922 Msa1070840:five_prime_UTR 60.0%
AGCGTCTGTGTCACGGCTTG+CGG + chr7_2:67130987-67131006 None:intergenic 60.0%
AGGGGGTCAGCAGAGGACAC+CGG - chr7_2:67129101-67129120 Msa1070840:three_prime_UTR 65.0%
CACGACGAGGGGGTCAGCAG+AGG - chr7_2:67129094-67129113 Msa1070840:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 67127747 67131052 67127747 ID=Msa1070840;Name=Msa1070840
chr7_2 mRNA 67127747 67131052 67127747 ID=Msa1070840-mRNA-1;Parent=Msa1070840;Name=Msa1070840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=291|1|1|1|0.6|0.5|6|1388|217
chr7_2 exon 67127747 67129185 67127747 ID=Msa1070840-mRNA-1:exon:14532;Parent=Msa1070840-mRNA-1
chr7_2 exon 67129290 67129367 67129290 ID=Msa1070840-mRNA-1:exon:14531;Parent=Msa1070840-mRNA-1
chr7_2 exon 67129507 67129786 67129507 ID=Msa1070840-mRNA-1:exon:14530;Parent=Msa1070840-mRNA-1
chr7_2 exon 67130341 67130587 67130341 ID=Msa1070840-mRNA-1:exon:14529;Parent=Msa1070840-mRNA-1
chr7_2 exon 67130678 67130814 67130678 ID=Msa1070840-mRNA-1:exon:14528;Parent=Msa1070840-mRNA-1
chr7_2 exon 67130901 67131052 67130901 ID=Msa1070840-mRNA-1:exon:14527;Parent=Msa1070840-mRNA-1
chr7_2 five_prime_UTR 67130901 67131052 67130901 ID=Msa1070840-mRNA-1:five_prime_utr;Parent=Msa1070840-mRNA-1
chr7_2 five_prime_UTR 67130678 67130814 67130678 ID=Msa1070840-mRNA-1:five_prime_utr;Parent=Msa1070840-mRNA-1
chr7_2 five_prime_UTR 67130586 67130587 67130586 ID=Msa1070840-mRNA-1:five_prime_utr;Parent=Msa1070840-mRNA-1
chr7_2 CDS 67130341 67130585 67130341 ID=Msa1070840-mRNA-1:cds;Parent=Msa1070840-mRNA-1
chr7_2 CDS 67129507 67129786 67129507 ID=Msa1070840-mRNA-1:cds;Parent=Msa1070840-mRNA-1
chr7_2 CDS 67129290 67129367 67129290 ID=Msa1070840-mRNA-1:cds;Parent=Msa1070840-mRNA-1
chr7_2 CDS 67129135 67129185 67129135 ID=Msa1070840-mRNA-1:cds;Parent=Msa1070840-mRNA-1
chr7_2 three_prime_UTR 67127747 67129134 67127747 ID=Msa1070840-mRNA-1:three_prime_utr;Parent=Msa1070840-mRNA-1
Gene Sequence

>Msa1070840

ATGGAGACAGAAGAGAGGAACCAAAGAGCATGTAAGGCAACAGAACCAGAGTTCTTCTTGCAGTGGGGAAACAGGAAGCGTTTGAGATGTGTAAGGGTGAAAGATCCTCGGATTTCAACTAGGCTTAACGGTGGTGTAATCAGAAGAAAGCTTAATTCTGGAGTGGAGAATCATCGTTCTGGTGTTACTGAGAAAGAAAGTTCTCATCTTCATCATCATCAACAACAACCTAATCGTCTCACAAGGAATTCCGATGGAACTATTCTACGACCGGCGGCCGGAGATAACAGAAAATCGGCATCACCGGAGAAGGAAGATCGATACTACACGACGAGGGGGTCAGCAGAGGACACCGGTAAAGGCACTTGCGATGTTATCAATGGAGAAGAAAAAGCTCTTGTTTGGCCTAAGCTTTACATTACTCTCTCAAGCAAAGAGAAAGAAGAAGATTTTCTTGCCATGAAAGGTTGTAAGCTTCCTCAAAGACCCAAAAAGAGGGCCAAAATCATCCAAAGAAGCTTATTGTTGGTAAGTCCTGGAGCATGGTTGACTGATATGTGTCAAGAGAGATATGAAGTTAGGGAGAAGAAAAGTAACAAGAAGAGGCCAAGAGGATTGAAGGCTATGGGGAGTGTGGAAAGTGATTCTGAATGA

Protein sequence

>Msa1070840

METEERNQRACKATEPEFFLQWGNRKRLRCVRVKDPRISTRLNGGVIRRKLNSGVENHRSGVTEKESSHLHHHQQQPNRLTRNSDGTILRPAAGDNRKSASPEKEDRYYTTRGSAEDTGKGTCDVINGEEKALVWPKLYITLSSKEKEEDFLAMKGCKLPQRPKKRAKIIQRSLLLVSPGAWLTDMCQERYEVREKKSNKKRPRGLKAMGSVESDSE*