Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960260 | XP_003619829.1 | 95.695 | 604 | 6 | 3 | 1 | 584 | 1 | 604 | 0.0 | 1174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960260 | sp|Q5SMQ9|PIN1A_ORYSJ | 71.429 | 616 | 123 | 11 | 1 | 584 | 1 | 595 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960260 | Q8GV74 | 95.695 | 604 | 6 | 3 | 1 | 584 | 1 | 604 | 0.0 | 1174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017670 | Msa0960260 | 0.816497 | 5.365310e-52 | -8.615850e-47 |
| Msa0108880 | Msa0960260 | 0.821741 | 3.435606e-53 | -8.615850e-47 |
| Msa0811690 | Msa0960260 | 0.809568 | 1.774566e-50 | -8.615850e-47 |
| Msa0125210 | Msa0960260 | 0.814552 | 1.453493e-51 | -8.615850e-47 |
| Msa0146650 | Msa0960260 | 0.802623 | 5.138588e-49 | -8.615850e-47 |
| Msa0405680 | Msa0960260 | 0.803826 | 2.895755e-49 | -8.615850e-47 |
| Msa0460550 | Msa0960260 | 0.807229 | 5.596948e-50 | -8.615850e-47 |
| Msa0479320 | Msa0960260 | 0.800920 | 1.149267e-48 | -8.615850e-47 |
| Msa0851850 | Msa0960260 | 0.819124 | 1.369172e-52 | -8.615850e-47 |
| Msa0894790 | Msa0960260 | 0.929647 | 5.146257e-93 | -8.615850e-47 |
| Msa0921590 | Msa0960260 | 0.895668 | 7.699906e-76 | -8.615850e-47 |
| Msa0945190 | Msa0960260 | 0.800503 | 1.397902e-48 | -8.615850e-47 |
| Msa0960260 | Msa0994720 | 0.895164 | 1.243308e-75 | -8.615850e-47 |
| Msa0960260 | Msa1078880 | 0.800827 | 1.200557e-48 | -8.615850e-47 |
| Msa0960260 | Msa1169190 | 0.802509 | 5.424122e-49 | -8.615850e-47 |
| Msa0960260 | Msa1277640 | 0.804351 | 2.252640e-49 | -8.615850e-47 |
| Msa0960260 | Msa1303560 | 0.805252 | 1.459905e-49 | -8.615850e-47 |
| Msa0960260 | Msa1303650 | 0.807273 | 5.477575e-50 | -8.615850e-47 |
| Msa0960260 | Msa1407840 | 0.800793 | 1.220102e-48 | -8.615850e-47 |
| Msa0960260 | Msa1409410 | 0.812577 | 3.953884e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960260 | MtrunA17_Chr6g0478431 | 95.695 | 604 | 6 | 3 | 1 | 584 | 1 | 604 | 0.0 | 1174 |
| Msa0960260 | MtrunA17_Chr7g0255941 | 68.167 | 622 | 129 | 12 | 1 | 584 | 1 | 591 | 0.0 | 805 |
| Msa0960260 | MtrunA17_Chr4g0044181 | 61.481 | 675 | 153 | 13 | 1 | 584 | 1 | 659 | 0.0 | 766 |
| Msa0960260 | MtrunA17_Chr8g0393111 | 68.912 | 579 | 93 | 11 | 1 | 554 | 1 | 517 | 0.0 | 748 |
| Msa0960260 | MtrunA17_Chr1g0160461 | 63.579 | 637 | 163 | 12 | 1 | 584 | 1 | 621 | 0.0 | 745 |
| Msa0960260 | MtrunA17_Chr4g0071571 | 60.000 | 635 | 193 | 11 | 1 | 584 | 1 | 625 | 0.0 | 714 |
| Msa0960260 | MtrunA17_Chr1g0159341 | 50.423 | 591 | 222 | 11 | 1 | 584 | 1 | 527 | 7.44e-177 | 510 |
| Msa0960260 | MtrunA17_Chr2g0298971 | 40.333 | 600 | 238 | 16 | 1 | 563 | 1 | 517 | 1.97e-131 | 394 |
| Msa0960260 | MtrunA17_Chr4g0071551 | 71.831 | 213 | 59 | 1 | 1 | 212 | 1 | 213 | 1.66e-109 | 327 |
| Msa0960260 | MtrunA17_Chr4g0071561 | 48.011 | 352 | 127 | 8 | 228 | 560 | 2 | 316 | 3.07e-90 | 281 |
| Msa0960260 | MtrunA17_Chr7g0216571 | 56.915 | 188 | 70 | 2 | 397 | 584 | 191 | 367 | 1.42e-62 | 210 |
| Msa0960260 | MtrunA17_Chr7g0216571 | 57.407 | 162 | 69 | 0 | 1 | 162 | 12 | 173 | 1.24e-55 | 192 |
| Msa0960260 | MtrunA17_Chr6g0452821 | 53.804 | 184 | 77 | 1 | 401 | 584 | 185 | 360 | 2.76e-61 | 207 |
| Msa0960260 | MtrunA17_Chr6g0452821 | 57.595 | 158 | 66 | 1 | 1 | 157 | 1 | 158 | 3.60e-54 | 187 |
| Msa0960260 | MtrunA17_Chr7g0249141 | 42.857 | 210 | 111 | 2 | 373 | 582 | 159 | 359 | 3.66e-52 | 182 |
| Msa0960260 | MtrunA17_Chr7g0249141 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.40e-49 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960260 | AT1G73590.1 | 71.090 | 633 | 123 | 11 | 1 | 584 | 1 | 622 | 0.0 | 860 |
| Msa0960260 | AT2G01420.1 | 61.709 | 632 | 174 | 13 | 1 | 584 | 1 | 612 | 0.0 | 739 |
| Msa0960260 | AT2G01420.2 | 61.635 | 636 | 172 | 13 | 1 | 584 | 1 | 616 | 0.0 | 736 |
| Msa0960260 | AT1G23080.3 | 63.477 | 627 | 174 | 11 | 1 | 584 | 1 | 615 | 0.0 | 732 |
| Msa0960260 | AT1G23080.4 | 63.477 | 627 | 174 | 11 | 1 | 584 | 1 | 615 | 0.0 | 732 |
| Msa0960260 | AT1G70940.1 | 61.774 | 654 | 166 | 14 | 1 | 584 | 1 | 640 | 0.0 | 731 |
| Msa0960260 | AT1G23080.1 | 63.233 | 631 | 173 | 12 | 1 | 584 | 1 | 619 | 0.0 | 731 |
| Msa0960260 | AT5G57090.1 | 58.642 | 648 | 203 | 10 | 1 | 584 | 1 | 647 | 0.0 | 712 |
| Msa0960260 | AT1G23080.2 | 60.227 | 528 | 155 | 12 | 1 | 485 | 1 | 516 | 0.0 | 578 |
| Msa0960260 | AT2G01420.3 | 57.914 | 537 | 154 | 13 | 1 | 485 | 1 | 517 | 0.0 | 568 |
| Msa0960260 | AT5G57090.2 | 55.941 | 547 | 176 | 10 | 102 | 584 | 2 | 547 | 0.0 | 551 |
| Msa0960260 | AT1G77110.1 | 49.336 | 602 | 255 | 12 | 1 | 584 | 1 | 570 | 0.0 | 532 |
| Msa0960260 | AT1G77110.2 | 48.966 | 580 | 246 | 12 | 1 | 562 | 1 | 548 | 1.62e-172 | 501 |
| Msa0960260 | AT5G15100.1 | 62.195 | 164 | 62 | 0 | 421 | 584 | 204 | 367 | 2.00e-62 | 210 |
| Msa0960260 | AT5G15100.1 | 49.091 | 165 | 79 | 1 | 1 | 160 | 1 | 165 | 2.91e-44 | 161 |
| Msa0960260 | AT5G16530.2 | 54.777 | 157 | 71 | 0 | 1 | 157 | 1 | 157 | 5.03e-53 | 184 |
| Msa0960260 | AT5G16530.2 | 49.635 | 137 | 69 | 0 | 427 | 563 | 192 | 328 | 1.73e-41 | 153 |
| Msa0960260 | AT5G16530.1 | 54.777 | 157 | 71 | 0 | 1 | 157 | 1 | 157 | 1.28e-52 | 184 |
| Msa0960260 | AT5G16530.1 | 52.000 | 150 | 72 | 0 | 430 | 579 | 195 | 344 | 2.00e-49 | 175 |
Find 122 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATAAACTCTAATTTAAT+TGG | 0.122548 | 6_3:-79489330 | None:intergenic |
| ATGGGAATTCCTTTACTTAA+AGG | 0.161203 | 6_3:+79484665 | Msa0960260:CDS |
| TCTTGTGTACTACATCTTAA+TGG | 0.199474 | 6_3:+79488953 | Msa0960260:CDS |
| GACTAGGCTTATATTGATTA+TGG | 0.205854 | 6_3:+79485999 | Msa0960260:CDS |
| AACACTTACTCTAGCTTAAT+TGG | 0.219273 | 6_3:+79486048 | Msa0960260:CDS |
| TCTTATTTCTTCTTGCTATA+TGG | 0.220059 | 6_3:+79484564 | Msa0960260:CDS |
| CTTGGTCTTTGGTTTCATTC+AGG | 0.226095 | 6_3:+79486076 | Msa0960260:CDS |
| AATTGGTCTCACTTGGTCTT+TGG | 0.247229 | 6_3:+79486065 | Msa0960260:CDS |
| CTTCCAAACACTTTGGTTAT+GGG | 0.260587 | 6_3:+79484647 | Msa0960260:CDS |
| ACTTCCAAACACTTTGGTTA+TGG | 0.265129 | 6_3:+79484646 | Msa0960260:CDS |
| AGACACTCAAGAGGACTATT+TGG | 0.274169 | 6_3:+79485861 | Msa0960260:CDS |
| CTTTCATGTTGCCGTTGTTC+AGG | 0.282706 | 6_3:+79487686 | Msa0960260:CDS |
| GTAGCTATGATCTTAGCTTA+TGG | 0.302571 | 6_3:+79484374 | Msa0960260:CDS |
| CTTGTGTACTACATCTTAAT+GGG | 0.304181 | 6_3:+79488954 | Msa0960260:CDS |
| CACCCTGTGCTTAGAATATC+AGG | 0.308657 | 6_3:-79488790 | None:intergenic |
| CCATTCTAAACAACCCCTTT+TGG | 0.316887 | 6_3:-79484597 | None:intergenic |
| AATGATGTTGTTAATAACTA+TGG | 0.326058 | 6_3:+79485142 | Msa0960260:CDS |
| TTTGTAGGAGAAAACATTCC+TGG | 0.335718 | 6_3:-79485265 | None:intergenic |
| AAGATCTTCATATGTTTGTT+TGG | 0.346836 | 6_3:+79485365 | Msa0960260:CDS |
| ATTAAGCTAGAGTAAGTGTT+TGG | 0.363628 | 6_3:-79486045 | None:intergenic |
| TAGCTTATGGATCAGTAAAA+TGG | 0.367227 | 6_3:+79484387 | Msa0960260:CDS |
| CCAAAAGGGGTTGTTTAGAA+TGG | 0.369590 | 6_3:+79484597 | Msa0960260:CDS |
| GGAAATAGACTTTGCTATAA+TGG | 0.370605 | 6_3:-79486283 | None:intergenic |
| GGCTTATATTGATTATGGTT+TGG | 0.374310 | 6_3:+79486004 | Msa0960260:CDS |
| ATTCCCATAACCAAAGTGTT+TGG | 0.375667 | 6_3:-79484650 | None:intergenic |
| TCTTCATAATTAGAAGGTCT+TGG | 0.376111 | 6_3:-79485193 | None:intergenic |
| CCTTTACTTAAAGGAATGTA+TGG | 0.377284 | 6_3:+79484674 | Msa0960260:CDS |
| GAGAAAGATGAATTCAGCTT+TGG | 0.386961 | 6_3:+79485883 | Msa0960260:CDS |
| TCAGCATTAGTAAGATTAGA+AGG | 0.389801 | 6_3:-79485010 | None:intergenic |
| GCTTCTTCTTCATAATTAGA+AGG | 0.394539 | 6_3:-79485199 | None:intergenic |
| AAGTCCTGCATCTGACAGTA+TGG | 0.396661 | 6_3:-79486304 | None:intergenic |
| GGAGAAAACATTCCTGGATT+AGG | 0.399766 | 6_3:-79485259 | None:intergenic |
| TTGTTCTTCAATGTATCATT+TGG | 0.400452 | 6_3:+79484729 | Msa0960260:CDS |
| TCACCTGTCTCTGATGTGTT+TGG | 0.400913 | 6_3:+79485400 | Msa0960260:CDS |
| GCAGCTGCTTCATTTGCTGT+TGG | 0.404122 | 6_3:+79487648 | Msa0960260:CDS |
| ATGTAGTACACAAGAGTAAT+GGG | 0.415483 | 6_3:-79488945 | None:intergenic |
| TATTCCTTAGCAAAGACAAA+TGG | 0.416542 | 6_3:-79488757 | None:intergenic |
| ATGGAGCAATTTCTCCAAAA+GGG | 0.423793 | 6_3:+79484583 | Msa0960260:CDS |
| CTAGCTTAATTGGTCTCACT+TGG | 0.425011 | 6_3:+79486058 | Msa0960260:CDS |
| ATCCTTACAAAATGAACCTT+AGG | 0.436200 | 6_3:+79484507 | Msa0960260:CDS |
| GAATAAACTCTAATTTAATT+GGG | 0.441406 | 6_3:-79489329 | None:intergenic |
| CCTTGTTGGTCCAGCTGTCA+TGG | 0.441793 | 6_3:+79487626 | Msa0960260:CDS |
| TCATTTGCTGTTGGACTCAA+AGG | 0.446394 | 6_3:+79487657 | Msa0960260:CDS |
| GAACAGTTTCCTGACACTGC+TGG | 0.447998 | 6_3:+79484806 | Msa0960260:CDS |
| AAGCATCACGAGAATTGAAT+AGG | 0.448777 | 6_3:+79489129 | Msa0960260:three_prime_UTR |
| CCATACATTCCTTTAAGTAA+AGG | 0.457088 | 6_3:-79484674 | None:intergenic |
| GATTGTTTGATGCTATGAAA+TGG | 0.458601 | 6_3:-79484487 | None:intergenic |
| TGCAATGACTTGGTTGGTTG+AGG | 0.463743 | 6_3:+79489047 | Msa0960260:three_prime_UTR |
| CTCAACACTTCCAAACACTT+TGG | 0.468618 | 6_3:+79484640 | Msa0960260:CDS |
| TATGGAGCAATTTCTCCAAA+AGG | 0.468730 | 6_3:+79484582 | Msa0960260:CDS |
| TGATTCTGATGTCATGTCAT+TGG | 0.471853 | 6_3:+79484850 | Msa0960260:CDS |
| CCTGTCTCTGATGTGTTTGG+TGG | 0.474026 | 6_3:+79485403 | Msa0960260:CDS |
| TTGATTCCTGAACATTGATC+AGG | 0.476336 | 6_3:-79484425 | None:intergenic |
| AAACTAGAACCTCTAGGAGT+AGG | 0.476890 | 6_3:-79485061 | None:intergenic |
| ATAAAATTCACGTGTGGTGA+TGG | 0.482654 | 6_3:+79489015 | Msa0960260:three_prime_UTR |
| AACTAGAACCTCTAGGAGTA+GGG | 0.482673 | 6_3:-79485060 | None:intergenic |
| GAATTCAGCTTTGGTAATAG+AGG | 0.484834 | 6_3:+79485892 | Msa0960260:CDS |
| GAAGCAGCTGCCATGACAGC+TGG | 0.484986 | 6_3:-79487636 | None:intergenic |
| GGTGGAAGAAACTCAAACTT+TGG | 0.486326 | 6_3:+79485115 | Msa0960260:CDS |
| ATTCCTTAGCAAAGACAAAT+GGG | 0.487126 | 6_3:-79488756 | None:intergenic |
| CAACATGAAGGTGGTGAGAA+AGG | 0.488878 | 6_3:+79485934 | Msa0960260:CDS |
| AACTATCCTGCACCTAATCC+AGG | 0.489266 | 6_3:+79485247 | Msa0960260:CDS |
| ACAATGGAACCAGCAGTGTC+AGG | 0.491234 | 6_3:-79484815 | None:intergenic |
| TATATCTTTGTTCCTTGATG+AGG | 0.493213 | 6_3:-79489293 | None:intergenic |
| ATGGGTGTGAGATTCCTTGT+TGG | 0.493337 | 6_3:+79487612 | Msa0960260:CDS |
| ATACTGTCAGATGCAGGACT+TGG | 0.497015 | 6_3:+79486306 | Msa0960260:CDS |
| TGTCCCATTTGTCTTTGCTA+AGG | 0.502481 | 6_3:+79488753 | Msa0960260:CDS |
| GGCATGGCTATGTTCAGTCT+TGG | 0.502767 | 6_3:+79486327 | Msa0960260:CDS |
| GATGTAGTACACAAGAGTAA+TGG | 0.503834 | 6_3:-79488946 | None:intergenic |
| TTGTTAAATGCGCCTCATCA+AGG | 0.504126 | 6_3:+79489281 | Msa0960260:three_prime_UTR |
| AACATTCCTGGATTAGGTGC+AGG | 0.504642 | 6_3:-79485253 | None:intergenic |
| GCCACACACAAAAGAGAGAA+AGG | 0.506037 | 6_3:+79489082 | Msa0960260:three_prime_UTR |
| CATCCTGATATTCTAAGCAC+AGG | 0.506231 | 6_3:+79488787 | Msa0960260:CDS |
| AGCCTAGTCATCACACTAGC+TGG | 0.508803 | 6_3:-79485985 | None:intergenic |
| GAATGAATGAAATGAAATGA+TGG | 0.513467 | 6_3:+79488982 | Msa0960260:exon |
| AAGATCATAGCTACATAAAG+TGG | 0.519198 | 6_3:-79484365 | None:intergenic |
| GATGCTGAAATCAAAGAAGA+TGG | 0.521178 | 6_3:+79484896 | Msa0960260:CDS |
| TTAGTAAGATTAGAAGGTCT+AGG | 0.522435 | 6_3:-79485004 | None:intergenic |
| ATAGACTTTGCTATAATGGC+AGG | 0.526481 | 6_3:-79486279 | None:intergenic |
| ATCAACATGGATTGAAACAA+TGG | 0.535163 | 6_3:-79484831 | None:intergenic |
| GTGTTTGGTGGACATGACTT+TGG | 0.541105 | 6_3:+79485415 | Msa0960260:CDS |
| ATTTCCATACTGTCAGATGC+AGG | 0.544656 | 6_3:+79486300 | Msa0960260:CDS |
| CAGCTTTGGTAATAGAGGAA+TGG | 0.545118 | 6_3:+79485897 | Msa0960260:CDS |
| ATTGGATGGTAGAACACCAT+TGG | 0.552263 | 6_3:+79484868 | Msa0960260:CDS |
| ATTTCAGCATCAGTTTCCAA+TGG | 0.555165 | 6_3:-79484884 | None:intergenic |
| GCATGTTCCATGCAATGACT+TGG | 0.556230 | 6_3:+79489037 | Msa0960260:three_prime_UTR |
| CAGCAAAGAGTGCAACAAAA+CGG | 0.557146 | 6_3:-79484448 | None:intergenic |
| CACCAGCTAGTGTGATGACT+AGG | 0.560308 | 6_3:+79485983 | Msa0960260:CDS |
| CAACCAACCAAGTCATTGCA+TGG | 0.562743 | 6_3:-79489044 | None:intergenic |
| GGTGGTGAGAAAGGTGGAGA+TGG | 0.565305 | 6_3:+79485943 | Msa0960260:CDS |
| GTTAATGCTAAGAAGAGTAA+TGG | 0.571263 | 6_3:+79485322 | Msa0960260:CDS |
| GGTTTATCTGCTAATTCAAG+AGG | 0.575033 | 6_3:+79485163 | Msa0960260:CDS |
| CCACCAAACACATCAGAGAC+AGG | 0.575955 | 6_3:-79485403 | None:intergenic |
| TGGTAATAGAGGAATGGAAA+GGG | 0.578501 | 6_3:+79485903 | Msa0960260:CDS |
| GTTCCATGCAATGACTTGGT+TGG | 0.582548 | 6_3:+79489041 | Msa0960260:three_prime_UTR |
| CTTATGGATCAGTAAAATGG+TGG | 0.591247 | 6_3:+79484390 | Msa0960260:CDS |
| TTGGTAATAGAGGAATGGAA+AGG | 0.591523 | 6_3:+79485902 | Msa0960260:CDS |
| TGGAGCAATTTCTCCAAAAG+GGG | 0.592702 | 6_3:+79484584 | Msa0960260:CDS |
| CATCACGAGAATTGAATAGG+AGG | 0.593519 | 6_3:+79489132 | Msa0960260:three_prime_UTR |
| TGATTAAAACTAGAACCTCT+AGG | 0.595193 | 6_3:-79485067 | None:intergenic |
| TAAACTCTAATTTAATTGGG+AGG | 0.595200 | 6_3:-79489326 | None:intergenic |
| CATGAAGGTGGTGAGAAAGG+TGG | 0.607207 | 6_3:+79485937 | Msa0960260:CDS |
| ATGAAATGGAATGAAAGAAG+TGG | 0.614917 | 6_3:-79484473 | None:intergenic |
| GTCAGATGCAGGACTTGGCA+TGG | 0.620374 | 6_3:+79486311 | Msa0960260:CDS |
| TGTTTGAGTTTAGAGGAGCA+AGG | 0.624922 | 6_3:+79484771 | Msa0960260:CDS |
| CAACAGGCAGCTCTTCCACA+AGG | 0.629681 | 6_3:+79488727 | Msa0960260:intron |
| AGGGAAATGAATCAACATGA+AGG | 0.630340 | 6_3:+79485922 | Msa0960260:CDS |
| CCATGACAGCTGGACCAACA+AGG | 0.634447 | 6_3:-79487626 | None:intergenic |
| TCTGATGTCATGTCATTGGA+TGG | 0.636707 | 6_3:+79484854 | Msa0960260:CDS |
| TCAAGAAACCCTACTCCTAG+AGG | 0.654645 | 6_3:+79485052 | Msa0960260:CDS |
| GAAATGAATCAACATGAAGG+TGG | 0.659006 | 6_3:+79485925 | Msa0960260:CDS |
| CTACCATGTCATGACAGCAA+TGG | 0.661376 | 6_3:+79484340 | Msa0960260:CDS |
| CTAGTCATCACACTAGCTGG+TGG | 0.661660 | 6_3:-79485982 | None:intergenic |
| GATTTCATAAAATTCACGTG+TGG | 0.661936 | 6_3:+79489009 | Msa0960260:three_prime_UTR |
| ACATGACATCAGAATCAACA+TGG | 0.668465 | 6_3:-79484844 | None:intergenic |
| ACAAATGGGACAATTCCTTG+TGG | 0.669772 | 6_3:-79488742 | None:intergenic |
| GCACCATTGCTGTCATGACA+TGG | 0.674152 | 6_3:-79484343 | None:intergenic |
| ATCCTGATATTCTAAGCACA+GGG | 0.676564 | 6_3:+79488788 | Msa0960260:CDS |
| AAGAAACAAGACCTGAACAA+CGG | 0.677067 | 6_3:-79487697 | None:intergenic |
| TTGTGTACTACATCTTAATG+GGG | 0.695067 | 6_3:+79488955 | Msa0960260:CDS |
| GGGTCATAGAGACACTCAAG+AGG | 0.695679 | 6_3:+79485852 | Msa0960260:CDS |
| ATTTACTCAAGAAGATCACA+AGG | 0.697954 | 6_3:+79484965 | Msa0960260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATCATAAAATTTAAAA+GGG | - | chr6_3:79487368-79487387 | None:intergenic | 10.0% |
| !! | AAGTTATCATAAAATTTAAA+AGG | - | chr6_3:79487369-79487388 | None:intergenic | 10.0% |
| !! | CTTCATATAAATATATATTT+GGG | - | chr6_3:79488233-79488252 | None:intergenic | 10.0% |
| !! | TCTTCATATAAATATATATT+TGG | - | chr6_3:79488234-79488253 | None:intergenic | 10.0% |
| !! | TCTTAAAAACTATAATATTA+TGG | + | chr6_3:79488443-79488462 | Msa0960260:intron | 10.0% |
| !!! | AATTACCATTAAAATTTTAT+AGG | + | chr6_3:79488474-79488493 | Msa0960260:intron | 10.0% |
| !!! | ATTACCATTAAAATTTTATA+GGG | + | chr6_3:79488475-79488494 | Msa0960260:intron | 10.0% |
| !! | TATGTAAAAATCAAACTTTA+AGG | - | chr6_3:79485774-79485793 | None:intergenic | 15.0% |
| !!! | TATTAGTTTGATTTTTATGT+TGG | + | chr6_3:79485792-79485811 | Msa0960260:intron | 15.0% |
| !! | AACAATTATCAAAATTAGAA+AGG | - | chr6_3:79486514-79486533 | None:intergenic | 15.0% |
| !!! | CAAAAATCATATTTGATAAT+TGG | + | chr6_3:79486903-79486922 | Msa0960260:intron | 15.0% |
| !!! | AAAAAAGAAATAATTTTCAG+TGG | + | chr6_3:79487895-79487914 | Msa0960260:intron | 15.0% |
| !!! | CTTTTTTAAATATGAATTGT+TGG | - | chr6_3:79487997-79488016 | None:intergenic | 15.0% |
| !! | TCAATTAGTTATTTAAAAAG+TGG | + | chr6_3:79488023-79488042 | Msa0960260:intron | 15.0% |
| !!! | TCCTTATTTACATTTTTATA+GGG | + | chr6_3:79488360-79488379 | Msa0960260:intron | 15.0% |
| !! | AATTGAAGTAAAATAATGAA+GGG | - | chr6_3:79488848-79488867 | None:intergenic | 15.0% |
| !! | AAATTGAAGTAAAATAATGA+AGG | - | chr6_3:79488849-79488868 | None:intergenic | 15.0% |
| !! | GAAAAAGTAAAATAAATTCT+TGG | - | chr6_3:79489161-79489180 | None:intergenic | 15.0% |
| !! | TGATAGTTCATTAAAAAAAA+AGG | - | chr6_3:79489203-79489222 | None:intergenic | 15.0% |
| !! | GAATAAACTCTAATTTAATT+GGG | - | chr6_3:79489332-79489351 | None:intergenic | 15.0% |
| !! | AGAATAAACTCTAATTTAAT+TGG | - | chr6_3:79489333-79489352 | None:intergenic | 15.0% |
| !!! | TACTGATTTTTATTCTATGA+TGG | + | chr6_3:79485090-79485109 | Msa0960260:CDS | 20.0% |
| !!! | ACTGATTTTTATTCTATGAT+GGG | + | chr6_3:79485091-79485110 | Msa0960260:CDS | 20.0% |
| !! | AATGATGTTGTTAATAACTA+TGG | + | chr6_3:79485142-79485161 | Msa0960260:CDS | 20.0% |
| !!! | TTTTTACTACCATTATTTGT+AGG | - | chr6_3:79485283-79485302 | None:intergenic | 20.0% |
| !! | AATAATGGTAGTAAAAATCT+TGG | + | chr6_3:79485286-79485305 | Msa0960260:CDS | 20.0% |
| !!! | AAAAACTATTTTCATATGCA+AGG | - | chr6_3:79485674-79485693 | None:intergenic | 20.0% |
| !!! | TGAAATAAGTGAATTTTAAG+AGG | + | chr6_3:79485748-79485767 | Msa0960260:intron | 20.0% |
| !! | CAAACTATAATCAATCAAAA+TGG | - | chr6_3:79486223-79486242 | None:intergenic | 20.0% |
| !!! | CATTTTGATTGATTATAGTT+TGG | + | chr6_3:79486221-79486240 | Msa0960260:intron | 20.0% |
| !!! | AATCTTTTTTCACTCTTTTA+AGG | + | chr6_3:79486669-79486688 | Msa0960260:intron | 20.0% |
| !! | TCAAATTTCAACATATTTAG+AGG | - | chr6_3:79486745-79486764 | None:intergenic | 20.0% |
| !!! | TCTTTACTCCTATTTTAAAT+TGG | + | chr6_3:79487172-79487191 | Msa0960260:intron | 20.0% |
| !!! | AGCATTTTCCAATTTAAAAT+AGG | - | chr6_3:79487183-79487202 | None:intergenic | 20.0% |
| !!! | TTTTTGCATTGAAAATTGTA+CGG | + | chr6_3:79487247-79487266 | Msa0960260:intron | 20.0% |
| !!! | AAGACATAGTTTCTTTTTTT+GGG | + | chr6_3:79487304-79487323 | Msa0960260:intron | 20.0% |
| !! | TTGTAATGGTTATGTTAAAA+GGG | - | chr6_3:79487744-79487763 | None:intergenic | 20.0% |
| !! | ATTGTAATGGTTATGTTAAA+AGG | - | chr6_3:79487745-79487764 | None:intergenic | 20.0% |
| !! | AAGTAAATTAAAAAAAGGAG+AGG | - | chr6_3:79487794-79487813 | None:intergenic | 20.0% |
| !! | ACAATAAACTAACTTATCTT+GGG | - | chr6_3:79487865-79487884 | None:intergenic | 20.0% |
| !! | AACAATAAACTAACTTATCT+TGG | - | chr6_3:79487866-79487885 | None:intergenic | 20.0% |
| !! | ATTTGACTCTATAATCTTAA+GGG | - | chr6_3:79488095-79488114 | None:intergenic | 20.0% |
| !! | AATTTGACTCTATAATCTTA+AGG | - | chr6_3:79488096-79488115 | None:intergenic | 20.0% |
| !!! | TAGAAACTTGTAATTTTGTA+GGG | - | chr6_3:79488305-79488324 | None:intergenic | 20.0% |
| !!! | TTAGAAACTTGTAATTTTGT+AGG | - | chr6_3:79488306-79488325 | None:intergenic | 20.0% |
| !!! | GTCCTTATTTACATTTTTAT+AGG | + | chr6_3:79488359-79488378 | Msa0960260:intron | 20.0% |
| !! | TCCCTATAAAAATGTAAATA+AGG | - | chr6_3:79488364-79488383 | None:intergenic | 20.0% |
| !!! | CATTTTTATAGGGATTATTT+TGG | + | chr6_3:79488370-79488389 | Msa0960260:intron | 20.0% |
| !!! | GAAAACTTTTTACCAAAAAT+TGG | - | chr6_3:79488409-79488428 | None:intergenic | 20.0% |
| !!! | GGTAAAAAGTTTTCAAAATA+AGG | + | chr6_3:79488415-79488434 | Msa0960260:intron | 20.0% |
| !!! | TTAGCCCTATAAAATTTTAA+TGG | - | chr6_3:79488482-79488501 | None:intergenic | 20.0% |
| !! | CCGATAATGAAAATAATTAA+GGG | - | chr6_3:79488545-79488564 | None:intergenic | 20.0% |
| !!! | CCCTTAATTATTTTCATTAT+CGG | + | chr6_3:79488542-79488561 | Msa0960260:intron | 20.0% |
| !! | ACCGATAATGAAAATAATTA+AGG | - | chr6_3:79488546-79488565 | None:intergenic | 20.0% |
| !! | GGAACAAAGATATATAAAAA+CGG | + | chr6_3:79489302-79489321 | Msa0960260:three_prime_UTR | 20.0% |
| !! | TCTTATTTCTTCTTGCTATA+TGG | + | chr6_3:79484564-79484583 | Msa0960260:CDS | 25.0% |
| !!! | TGAATTTTCAGGTAGTTTAA+TGG | + | chr6_3:79484697-79484716 | Msa0960260:CDS | 25.0% |
| ! | TTGTTCTTCAATGTATCATT+TGG | + | chr6_3:79484729-79484748 | Msa0960260:CDS | 25.0% |
| !! | ATGTTTTCTCCTACAAATAA+TGG | + | chr6_3:79485271-79485290 | Msa0960260:CDS | 25.0% |
| ! | AAGATCTTCATATGTTTGTT+TGG | + | chr6_3:79485365-79485384 | Msa0960260:CDS | 25.0% |
| !! | AAAAAAAAACAACCTTTTCC+AGG | - | chr6_3:79485478-79485497 | None:intergenic | 25.0% |
| ! | ATAAGTAGTTTATCCAAACA+AGG | - | chr6_3:79485532-79485551 | None:intergenic | 25.0% |
| ! | CATAGACTGAAAATAGTTTA+CGG | + | chr6_3:79485647-79485666 | Msa0960260:intron | 25.0% |
| ! | TGGAATCAATATGAAGAATT+TGG | - | chr6_3:79486203-79486222 | None:intergenic | 25.0% |
| ! | ATATTTAGAGGAGTTAAGAT+GGG | - | chr6_3:79486733-79486752 | None:intergenic | 25.0% |
| !! | CTAATACGTCTTTTGTTAAT+CGG | - | chr6_3:79487126-79487145 | None:intergenic | 25.0% |
| !!! | CAAGACATAGTTTCTTTTTT+TGG | + | chr6_3:79487303-79487322 | Msa0960260:intron | 25.0% |
| !!! | AAAAAAGGAGAGGAATTTTT+TGG | - | chr6_3:79487784-79487803 | None:intergenic | 25.0% |
| !! | AAGAAATAATTTTCAGTGGT+TGG | + | chr6_3:79487899-79487918 | Msa0960260:intron | 25.0% |
| ! | GTACAAAAATATATGCACTA+TGG | + | chr6_3:79487931-79487950 | Msa0960260:intron | 25.0% |
| ! | TCTTTGCAAATAACATTCTT+TGG | + | chr6_3:79487956-79487975 | Msa0960260:intron | 25.0% |
| !!! | TTTTATAGGGATTATTTTGG+AGG | + | chr6_3:79488373-79488392 | Msa0960260:intron | 25.0% |
| ! | ATATTTGTACAACAAACAGT+TGG | + | chr6_3:79488648-79488667 | Msa0960260:intron | 25.0% |
| ! | ACAAACAAACATGTTAAATG+TGG | - | chr6_3:79488676-79488695 | None:intergenic | 25.0% |
| !! | TTCATTGGTTAGCATTAAAA+GGG | - | chr6_3:79488875-79488894 | None:intergenic | 25.0% |
| !! | TTTCATTGGTTAGCATTAAA+AGG | - | chr6_3:79488876-79488895 | None:intergenic | 25.0% |
| !! | CTAACCAATGAAACTAATTT+TGG | + | chr6_3:79488883-79488902 | Msa0960260:intron | 25.0% |
| ! | GAATGAATGAAATGAAATGA+TGG | + | chr6_3:79488982-79489001 | Msa0960260:exon | 25.0% |
| ! | TAAACTCTAATTTAATTGGG+AGG | - | chr6_3:79489329-79489348 | None:intergenic | 25.0% |
| AAGATCATAGCTACATAAAG+TGG | - | chr6_3:79484368-79484387 | None:intergenic | 30.0% | |
| TAGCTTATGGATCAGTAAAA+TGG | + | chr6_3:79484387-79484406 | Msa0960260:CDS | 30.0% | |
| ATGAAATGGAATGAAAGAAG+TGG | - | chr6_3:79484476-79484495 | None:intergenic | 30.0% | |
| GATTGTTTGATGCTATGAAA+TGG | - | chr6_3:79484490-79484509 | None:intergenic | 30.0% | |
| ATCCTTACAAAATGAACCTT+AGG | + | chr6_3:79484507-79484526 | Msa0960260:CDS | 30.0% | |
| ! | AACCTAAGGTTCATTTTGTA+AGG | - | chr6_3:79484512-79484531 | None:intergenic | 30.0% |
| ATGGGAATTCCTTTACTTAA+AGG | + | chr6_3:79484665-79484684 | Msa0960260:CDS | 30.0% | |
| CCATACATTCCTTTAAGTAA+AGG | - | chr6_3:79484677-79484696 | None:intergenic | 30.0% | |
| CCTTTACTTAAAGGAATGTA+TGG | + | chr6_3:79484674-79484693 | Msa0960260:CDS | 30.0% | |
| !! | CTTTTCATGTTTGAGTTTAG+AGG | + | chr6_3:79484764-79484783 | Msa0960260:CDS | 30.0% |
| ! | ATCAACATGGATTGAAACAA+TGG | - | chr6_3:79484834-79484853 | None:intergenic | 30.0% |
| ATTTACTCAAGAAGATCACA+AGG | + | chr6_3:79484965-79484984 | Msa0960260:CDS | 30.0% | |
| TTAGTAAGATTAGAAGGTCT+AGG | - | chr6_3:79485007-79485026 | None:intergenic | 30.0% | |
| TCAGCATTAGTAAGATTAGA+AGG | - | chr6_3:79485013-79485032 | None:intergenic | 30.0% | |
| TGATTAAAACTAGAACCTCT+AGG | - | chr6_3:79485070-79485089 | None:intergenic | 30.0% | |
| !! | GATTTTTATTCTATGATGGG+TGG | + | chr6_3:79485094-79485113 | Msa0960260:CDS | 30.0% |
| TCTTCATAATTAGAAGGTCT+TGG | - | chr6_3:79485196-79485215 | None:intergenic | 30.0% | |
| GCTTCTTCTTCATAATTAGA+AGG | - | chr6_3:79485202-79485221 | None:intergenic | 30.0% | |
| GTTAATGCTAAGAAGAGTAA+TGG | + | chr6_3:79485322-79485341 | Msa0960260:CDS | 30.0% | |
| ! | TCTTCATATGCTTTTCGAAA+CGG | + | chr6_3:79485695-79485714 | Msa0960260:intron | 30.0% |
| !!! | GTTGGTTTTCATTTTGTTTG+TGG | + | chr6_3:79485810-79485829 | Msa0960260:intron | 30.0% |
| ! | GACTAGGCTTATATTGATTA+TGG | + | chr6_3:79485999-79486018 | Msa0960260:CDS | 30.0% |
| ! | GGCTTATATTGATTATGGTT+TGG | + | chr6_3:79486004-79486023 | Msa0960260:CDS | 30.0% |
| ATTAAGCTAGAGTAAGTGTT+TGG | - | chr6_3:79486048-79486067 | None:intergenic | 30.0% | |
| ! | AACACTTACTCTAGCTTAAT+TGG | + | chr6_3:79486048-79486067 | Msa0960260:CDS | 30.0% |
| CATATCTTCCACTTGATATT+TGG | + | chr6_3:79486124-79486143 | Msa0960260:intron | 30.0% | |
| ! | GGAAATAGACTTTGCTATAA+TGG | - | chr6_3:79486286-79486305 | None:intergenic | 30.0% |
| !!! | GCTCTATCTTTTACTTTTTC+AGG | - | chr6_3:79486469-79486488 | None:intergenic | 30.0% |
| CATATTTAGAGGAGTTAAGA+TGG | - | chr6_3:79486734-79486753 | None:intergenic | 30.0% | |
| CTGAAGATATATAGTGATAG+TGG | + | chr6_3:79487472-79487491 | Msa0960260:intron | 30.0% | |
| TAGTGGTGATACTAATTGAT+TGG | + | chr6_3:79487489-79487508 | Msa0960260:intron | 30.0% | |
| ! | TTTCCACATGCTATGATTTT+TGG | - | chr6_3:79487573-79487592 | None:intergenic | 30.0% |
| GCATGCAATGAATATTGTAA+TGG | - | chr6_3:79487758-79487777 | None:intergenic | 30.0% | |
| TTTCAGTGGTTGGAATTTAT+TGG | + | chr6_3:79487909-79487928 | Msa0960260:intron | 30.0% | |
| AAGTTCAAATTCATTGGTGT+CGG | - | chr6_3:79488069-79488088 | None:intergenic | 30.0% | |
| ! | TCATAATGTTTTCAGTTGAG+TGG | - | chr6_3:79488123-79488142 | None:intergenic | 30.0% |
| !!! | GGACTAAAAGTACCAATTTT+TGG | + | chr6_3:79488394-79488413 | Msa0960260:intron | 30.0% |
| ! | CTTGAAAACTCATGATTTGT+AGG | + | chr6_3:79488503-79488522 | Msa0960260:intron | 30.0% |
| ! | TTGGTAATTAGATGCCAAAT+TGG | - | chr6_3:79488703-79488722 | None:intergenic | 30.0% |
| TCTAATTACCAAAAACCAAC+AGG | + | chr6_3:79488711-79488730 | Msa0960260:intron | 30.0% | |
| ATTCCTTAGCAAAGACAAAT+GGG | - | chr6_3:79488759-79488778 | None:intergenic | 30.0% | |
| TATTCCTTAGCAAAGACAAA+TGG | - | chr6_3:79488760-79488779 | None:intergenic | 30.0% | |
| GAAGTAAAATAATGAAGGGT+AGG | - | chr6_3:79488844-79488863 | None:intergenic | 30.0% | |
| ! | CTCACCAAAATTAGTTTCAT+TGG | - | chr6_3:79488890-79488909 | None:intergenic | 30.0% |
| ATGTAGTACACAAGAGTAAT+GGG | - | chr6_3:79488948-79488967 | None:intergenic | 30.0% | |
| TCTTGTGTACTACATCTTAA+TGG | + | chr6_3:79488953-79488972 | Msa0960260:CDS | 30.0% | |
| CTTGTGTACTACATCTTAAT+GGG | + | chr6_3:79488954-79488973 | Msa0960260:CDS | 30.0% | |
| TTGTGTACTACATCTTAATG+GGG | + | chr6_3:79488955-79488974 | Msa0960260:CDS | 30.0% | |
| GATTTCATAAAATTCACGTG+TGG | + | chr6_3:79489009-79489028 | Msa0960260:three_prime_UTR | 30.0% | |
| CAAAAGAGAGAAAGGAAAAA+AGG | + | chr6_3:79489090-79489109 | Msa0960260:three_prime_UTR | 30.0% | |
| !! | GAAAGGAAAAAAGGTGTTAA+AGG | + | chr6_3:79489099-79489118 | Msa0960260:three_prime_UTR | 30.0% |
| TATATCTTTGTTCCTTGATG+AGG | - | chr6_3:79489296-79489315 | None:intergenic | 30.0% | |
| GTAGCTATGATCTTAGCTTA+TGG | + | chr6_3:79484374-79484393 | Msa0960260:CDS | 35.0% | |
| CTTATGGATCAGTAAAATGG+TGG | + | chr6_3:79484390-79484409 | Msa0960260:CDS | 35.0% | |
| ! | TTTTCACCTGATCAATGTTC+AGG | + | chr6_3:79484419-79484438 | Msa0960260:CDS | 35.0% |
| TTGATTCCTGAACATTGATC+AGG | - | chr6_3:79484428-79484447 | None:intergenic | 35.0% | |
| TATCAGCTGCTAAAAACCTA+AGG | - | chr6_3:79484526-79484545 | None:intergenic | 35.0% | |
| TATGGAGCAATTTCTCCAAA+AGG | + | chr6_3:79484582-79484601 | Msa0960260:CDS | 35.0% | |
| ATGGAGCAATTTCTCCAAAA+GGG | + | chr6_3:79484583-79484602 | Msa0960260:CDS | 35.0% | |
| ACTTCCAAACACTTTGGTTA+TGG | + | chr6_3:79484646-79484665 | Msa0960260:CDS | 35.0% | |
| CTTCCAAACACTTTGGTTAT+GGG | + | chr6_3:79484647-79484666 | Msa0960260:CDS | 35.0% | |
| ! | ATTCCCATAACCAAAGTGTT+TGG | - | chr6_3:79484653-79484672 | None:intergenic | 35.0% |
| ! | GGAATGTATGGTGAATTTTC+AGG | + | chr6_3:79484686-79484705 | Msa0960260:CDS | 35.0% |
| ACATGACATCAGAATCAACA+TGG | - | chr6_3:79484847-79484866 | None:intergenic | 35.0% | |
| TGATTCTGATGTCATGTCAT+TGG | + | chr6_3:79484850-79484869 | Msa0960260:CDS | 35.0% | |
| ATTTCAGCATCAGTTTCCAA+TGG | - | chr6_3:79484887-79484906 | None:intergenic | 35.0% | |
| GATGCTGAAATCAAAGAAGA+TGG | + | chr6_3:79484896-79484915 | Msa0960260:CDS | 35.0% | |
| !!! | TTTTATTCTATGATGGGTGG+TGG | + | chr6_3:79485097-79485116 | Msa0960260:CDS | 35.0% |
| GGTTTATCTGCTAATTCAAG+AGG | + | chr6_3:79485163-79485182 | Msa0960260:CDS | 35.0% | |
| TTTGTAGGAGAAAACATTCC+TGG | - | chr6_3:79485268-79485287 | None:intergenic | 35.0% | |
| GTTAAATTGAATGTGTCTCC+TGG | + | chr6_3:79485457-79485476 | Msa0960260:intron | 35.0% | |
| ! | CCAAACAAGGTCTAAGATAA+AGG | - | chr6_3:79485519-79485538 | None:intergenic | 35.0% |
| CCTTTATCTTAGACCTTGTT+TGG | + | chr6_3:79485516-79485535 | Msa0960260:intron | 35.0% | |
| TGTGGTGTTTGATGAATTAG+TGG | + | chr6_3:79485828-79485847 | Msa0960260:intron | 35.0% | |
| GTGTTTGATGAATTAGTGGA+GGG | + | chr6_3:79485832-79485851 | Msa0960260:intron | 35.0% | |
| GAGAAAGATGAATTCAGCTT+TGG | + | chr6_3:79485883-79485902 | Msa0960260:CDS | 35.0% | |
| ! | GAATTCAGCTTTGGTAATAG+AGG | + | chr6_3:79485892-79485911 | Msa0960260:CDS | 35.0% |
| ! | TTGGTAATAGAGGAATGGAA+AGG | + | chr6_3:79485902-79485921 | Msa0960260:CDS | 35.0% |
| TGGTAATAGAGGAATGGAAA+GGG | + | chr6_3:79485903-79485922 | Msa0960260:CDS | 35.0% | |
| AGGGAAATGAATCAACATGA+AGG | + | chr6_3:79485922-79485941 | Msa0960260:CDS | 35.0% | |
| GAAATGAATCAACATGAAGG+TGG | + | chr6_3:79485925-79485944 | Msa0960260:CDS | 35.0% | |
| ATCAAGTGGAAGATATGCAT+AGG | - | chr6_3:79486121-79486140 | None:intergenic | 35.0% | |
| ! | TGGTTTGTGTTGTATATTGC+AGG | + | chr6_3:79486241-79486260 | Msa0960260:intron | 35.0% |
| ! | ATAGACTTTGCTATAATGGC+AGG | - | chr6_3:79486282-79486301 | None:intergenic | 35.0% |
| ! | TAATGTGTCATTCGTTAGTC+AGG | - | chr6_3:79487062-79487081 | None:intergenic | 35.0% |
| TTCCTTAAACAATGCCCTTA+GGG | + | chr6_3:79487327-79487346 | Msa0960260:intron | 35.0% | |
| !!! | TGTTTTGACAGGTTTGTTCA+TGG | + | chr6_3:79487539-79487558 | Msa0960260:intron | 35.0% |
| CAACCAAAAATCATAGCATG+TGG | + | chr6_3:79487567-79487586 | Msa0960260:CDS | 35.0% | |
| AAGAAACAAGACCTGAACAA+CGG | - | chr6_3:79487700-79487719 | None:intergenic | 35.0% | |
| !!! | AAGGAGAGGAATTTTTTGGA+GGG | - | chr6_3:79487780-79487799 | None:intergenic | 35.0% |
| !!! | AAAGGAGAGGAATTTTTTGG+AGG | - | chr6_3:79487781-79487800 | None:intergenic | 35.0% |
| GGGTTGAAGTTCAAATTCAT+TGG | - | chr6_3:79488075-79488094 | None:intergenic | 35.0% | |
| GTTTGTTTGTCTGTCCAATT+TGG | + | chr6_3:79488686-79488705 | Msa0960260:intron | 35.0% | |
| ATCCTGATATTCTAAGCACA+GGG | + | chr6_3:79488788-79488807 | Msa0960260:CDS | 35.0% | |
| !!! | TGAGAATGCAGTGTCATTTT+TGG | + | chr6_3:79488906-79488925 | Msa0960260:intron | 35.0% |
| !!! | GAGAATGCAGTGTCATTTTT+GGG | + | chr6_3:79488907-79488926 | Msa0960260:intron | 35.0% |
| GATGTAGTACACAAGAGTAA+TGG | - | chr6_3:79488949-79488968 | None:intergenic | 35.0% | |
| ATAAAATTCACGTGTGGTGA+TGG | + | chr6_3:79489015-79489034 | Msa0960260:three_prime_UTR | 35.0% | |
| AAGCATCACGAGAATTGAAT+AGG | + | chr6_3:79489129-79489148 | Msa0960260:three_prime_UTR | 35.0% | |
| ! | CAGCAAAGAGTGCAACAAAA+CGG | - | chr6_3:79484451-79484470 | None:intergenic | 40.0% |
| TGGAGCAATTTCTCCAAAAG+GGG | + | chr6_3:79484584-79484603 | Msa0960260:CDS | 40.0% | |
| ! | CCATTCTAAACAACCCCTTT+TGG | - | chr6_3:79484600-79484619 | None:intergenic | 40.0% |
| CCAAAAGGGGTTGTTTAGAA+TGG | + | chr6_3:79484597-79484616 | Msa0960260:CDS | 40.0% | |
| CTCAACACTTCCAAACACTT+TGG | + | chr6_3:79484640-79484659 | Msa0960260:CDS | 40.0% | |
| ! | TGTTTGAGTTTAGAGGAGCA+AGG | + | chr6_3:79484771-79484790 | Msa0960260:CDS | 40.0% |
| TCTGATGTCATGTCATTGGA+TGG | + | chr6_3:79484854-79484873 | Msa0960260:CDS | 40.0% | |
| ATTGGATGGTAGAACACCAT+TGG | + | chr6_3:79484868-79484887 | Msa0960260:CDS | 40.0% | |
| ! | AACTAGAACCTCTAGGAGTA+GGG | - | chr6_3:79485063-79485082 | None:intergenic | 40.0% |
| ! | AAACTAGAACCTCTAGGAGT+AGG | - | chr6_3:79485064-79485083 | None:intergenic | 40.0% |
| GGTGGAAGAAACTCAAACTT+TGG | + | chr6_3:79485115-79485134 | Msa0960260:CDS | 40.0% | |
| GGAGAAAACATTCCTGGATT+AGG | - | chr6_3:79485262-79485281 | None:intergenic | 40.0% | |
| TTGAATGTGTCTCCTGGAAA+AGG | + | chr6_3:79485463-79485482 | Msa0960260:intron | 40.0% | |
| GGTGTTTGATGAATTAGTGG+AGG | + | chr6_3:79485831-79485850 | Msa0960260:intron | 40.0% | |
| AGACACTCAAGAGGACTATT+TGG | + | chr6_3:79485861-79485880 | Msa0960260:CDS | 40.0% | |
| ! | CAGCTTTGGTAATAGAGGAA+TGG | + | chr6_3:79485897-79485916 | Msa0960260:CDS | 40.0% |
| ! | CTAGCTTAATTGGTCTCACT+TGG | + | chr6_3:79486058-79486077 | Msa0960260:CDS | 40.0% |
| ! | AATTGGTCTCACTTGGTCTT+TGG | + | chr6_3:79486065-79486084 | Msa0960260:CDS | 40.0% |
| ! | CTTGGTCTTTGGTTTCATTC+AGG | + | chr6_3:79486076-79486095 | Msa0960260:CDS | 40.0% |
| CAGACAGTCCAAATATCAAG+TGG | - | chr6_3:79486135-79486154 | None:intergenic | 40.0% | |
| ATTTCCATACTGTCAGATGC+AGG | + | chr6_3:79486300-79486319 | Msa0960260:CDS | 40.0% | |
| TGTCATTCGTTAGTCAGGTT+CGG | - | chr6_3:79487057-79487076 | None:intergenic | 40.0% | |
| AAATGCTAACAAGTGCCCTA+AGG | + | chr6_3:79487196-79487215 | Msa0960260:intron | 40.0% | |
| AATGCTAACAAGTGCCCTAA+GGG | + | chr6_3:79487197-79487216 | Msa0960260:intron | 40.0% | |
| ATGCTCAAACAATGCCCTTA+GGG | - | chr6_3:79487214-79487233 | None:intergenic | 40.0% | |
| GTTCCTTAAACAATGCCCTT+AGG | + | chr6_3:79487326-79487345 | Msa0960260:intron | 40.0% | |
| TCAAAACAAGCATGCCAAAG+AGG | - | chr6_3:79487527-79487546 | None:intergenic | 40.0% | |
| !!! | TTTGGCATGCTTGTTTTGAC+AGG | + | chr6_3:79487528-79487547 | Msa0960260:intron | 40.0% |
| !!! | TTCCGTTGCAGCTTTTTCAA+TGG | + | chr6_3:79487593-79487612 | Msa0960260:CDS | 40.0% |
| !!! | TCCGTTGCAGCTTTTTCAAT+GGG | + | chr6_3:79487594-79487613 | Msa0960260:CDS | 40.0% |
| ACCCATTGAAAAAGCTGCAA+CGG | - | chr6_3:79487598-79487617 | None:intergenic | 40.0% | |
| !! | TCATTTGCTGTTGGACTCAA+AGG | + | chr6_3:79487657-79487676 | Msa0960260:CDS | 40.0% |
| ACAAATGGGACAATTCCTTG+TGG | - | chr6_3:79488745-79488764 | None:intergenic | 40.0% | |
| TGTCCCATTTGTCTTTGCTA+AGG | + | chr6_3:79488753-79488772 | Msa0960260:CDS | 40.0% | |
| CATCCTGATATTCTAAGCAC+AGG | + | chr6_3:79488787-79488806 | Msa0960260:CDS | 40.0% | |
| ! | TCCTTTCTCTCTTTTGTGTG+TGG | - | chr6_3:79489086-79489105 | None:intergenic | 40.0% |
| CATCACGAGAATTGAATAGG+AGG | + | chr6_3:79489132-79489151 | Msa0960260:three_prime_UTR | 40.0% | |
| TTGTTAAATGCGCCTCATCA+AGG | + | chr6_3:79489281-79489300 | Msa0960260:three_prime_UTR | 40.0% | |
| CTACCATGTCATGACAGCAA+TGG | + | chr6_3:79484340-79484359 | Msa0960260:CDS | 45.0% | |
| TCAAGAAACCCTACTCCTAG+AGG | + | chr6_3:79485052-79485071 | Msa0960260:CDS | 45.0% | |
| AACTATCCTGCACCTAATCC+AGG | + | chr6_3:79485247-79485266 | Msa0960260:CDS | 45.0% | |
| ! | AACATTCCTGGATTAGGTGC+AGG | - | chr6_3:79485256-79485275 | None:intergenic | 45.0% |
| TCACCTGTCTCTGATGTGTT+TGG | + | chr6_3:79485400-79485419 | Msa0960260:CDS | 45.0% | |
| ! | GTGTTTGGTGGACATGACTT+TGG | + | chr6_3:79485415-79485434 | Msa0960260:CDS | 45.0% |
| CAACATGAAGGTGGTGAGAA+AGG | + | chr6_3:79485934-79485953 | Msa0960260:CDS | 45.0% | |
| AAGTCCTGCATCTGACAGTA+TGG | - | chr6_3:79486307-79486326 | None:intergenic | 45.0% | |
| ATACTGTCAGATGCAGGACT+TGG | + | chr6_3:79486306-79486325 | Msa0960260:CDS | 45.0% | |
| CAAAGCAAGCAAGCAAGCAA+AGG | + | chr6_3:79486564-79486583 | Msa0960260:intron | 45.0% | |
| GATGCTCAAACAATGCCCTT+AGG | - | chr6_3:79487215-79487234 | None:intergenic | 45.0% | |
| !! | TGCCCTAAGGGCATTGTTTA+AGG | - | chr6_3:79487332-79487351 | None:intergenic | 45.0% |
| CTTGCTAACAAGTGCCCTAA+GGG | - | chr6_3:79487344-79487363 | None:intergenic | 45.0% | |
| TCTTGCTAACAAGTGCCCTA+AGG | - | chr6_3:79487345-79487364 | None:intergenic | 45.0% | |
| ACCTCATCACATCACAAGCT+TGG | - | chr6_3:79487396-79487415 | None:intergenic | 45.0% | |
| ATGTGATGAGGTGTGGTTAG+TGG | + | chr6_3:79487404-79487423 | Msa0960260:intron | 45.0% | |
| AAACAAGCATGCCAAAGAGG+AGG | - | chr6_3:79487524-79487543 | None:intergenic | 45.0% | |
| ATGGGTGTGAGATTCCTTGT+TGG | + | chr6_3:79487612-79487631 | Msa0960260:CDS | 45.0% | |
| CTTTCATGTTGCCGTTGTTC+AGG | + | chr6_3:79487686-79487705 | Msa0960260:CDS | 45.0% | |
| !!! | AAGAGCTGCCTGTTGGTTTT+TGG | - | chr6_3:79488722-79488741 | None:intergenic | 45.0% |
| CACCCTGTGCTTAGAATATC+AGG | - | chr6_3:79488793-79488812 | None:intergenic | 45.0% | |
| GCATGTTCCATGCAATGACT+TGG | + | chr6_3:79489037-79489056 | Msa0960260:three_prime_UTR | 45.0% | |
| !! | GTTCCATGCAATGACTTGGT+TGG | + | chr6_3:79489041-79489060 | Msa0960260:three_prime_UTR | 45.0% |
| CAACCAACCAAGTCATTGCA+TGG | - | chr6_3:79489047-79489066 | None:intergenic | 45.0% | |
| !! | TGCAATGACTTGGTTGGTTG+AGG | + | chr6_3:79489047-79489066 | Msa0960260:three_prime_UTR | 45.0% |
| GCCACACACAAAAGAGAGAA+AGG | + | chr6_3:79489082-79489101 | Msa0960260:three_prime_UTR | 45.0% | |
| !!! | TTTTAAATTAACTTTTATTA+TGG | + | chr6_3:79486932-79486951 | Msa0960260:intron | 5.0% |
| !! | ATTAAAAGTAAATTAAAAAA+AGG | - | chr6_3:79487799-79487818 | None:intergenic | 5.0% |
| !! | TTTGTATAATAATTAATTAT+TGG | + | chr6_3:79488261-79488280 | Msa0960260:intron | 5.0% |
| !! | TTGTATAATAATTAATTATT+GGG | + | chr6_3:79488262-79488281 | Msa0960260:intron | 5.0% |
| GCACCATTGCTGTCATGACA+TGG | - | chr6_3:79484346-79484365 | None:intergenic | 50.0% | |
| GAACAGTTTCCTGACACTGC+TGG | + | chr6_3:79484806-79484825 | Msa0960260:CDS | 50.0% | |
| ACAATGGAACCAGCAGTGTC+AGG | - | chr6_3:79484818-79484837 | None:intergenic | 50.0% | |
| CCACCAAACACATCAGAGAC+AGG | - | chr6_3:79485406-79485425 | None:intergenic | 50.0% | |
| CCTGTCTCTGATGTGTTTGG+TGG | + | chr6_3:79485403-79485422 | Msa0960260:CDS | 50.0% | |
| GGGTCATAGAGACACTCAAG+AGG | + | chr6_3:79485852-79485871 | Msa0960260:CDS | 50.0% | |
| CATGAAGGTGGTGAGAAAGG+TGG | + | chr6_3:79485937-79485956 | Msa0960260:CDS | 50.0% | |
| CTAGTCATCACACTAGCTGG+TGG | - | chr6_3:79485985-79486004 | None:intergenic | 50.0% | |
| CACCAGCTAGTGTGATGACT+AGG | + | chr6_3:79485983-79486002 | Msa0960260:CDS | 50.0% | |
| AGCCTAGTCATCACACTAGC+TGG | - | chr6_3:79485988-79486007 | None:intergenic | 50.0% | |
| GGCATGGCTATGTTCAGTCT+TGG | + | chr6_3:79486327-79486346 | Msa0960260:CDS | 50.0% | |
| AGCAAGCAAGCAAGCAAAGG+TGG | + | chr6_3:79486567-79486586 | Msa0960260:intron | 50.0% | |
| GCCAAGCTTGTGATGTGATG+AGG | + | chr6_3:79487392-79487411 | Msa0960260:intron | 50.0% | |
| GCTTGTGATGTGATGAGGTG+TGG | + | chr6_3:79487397-79487416 | Msa0960260:intron | 50.0% | |
| TGATGAGGTGTGGTTAGTGG+TGG | + | chr6_3:79487407-79487426 | Msa0960260:intron | 50.0% | |
| !! | GCAGCTGCTTCATTTGCTGT+TGG | + | chr6_3:79487648-79487667 | Msa0960260:CDS | 50.0% |
| GGTGGTGAGAAAGGTGGAGA+TGG | + | chr6_3:79485943-79485962 | Msa0960260:CDS | 55.0% | |
| CGTGCAATCGTTGACGACAG+AGG | + | chr6_3:79486175-79486194 | Msa0960260:intron | 55.0% | |
| GTCAGATGCAGGACTTGGCA+TGG | + | chr6_3:79486311-79486330 | Msa0960260:CDS | 55.0% | |
| GCAAGCAAGCAAAGGTGGAG+TGG | + | chr6_3:79486572-79486591 | Msa0960260:intron | 55.0% | |
| GGCATGCTTTGCCTCCTCTT+TGG | + | chr6_3:79487510-79487529 | Msa0960260:intron | 55.0% | |
| CCATGACAGCTGGACCAACA+AGG | - | chr6_3:79487629-79487648 | None:intergenic | 55.0% | |
| CCTTGTTGGTCCAGCTGTCA+TGG | + | chr6_3:79487626-79487645 | Msa0960260:CDS | 55.0% | |
| CTTGTGGAAGAGCTGCCTGT+TGG | - | chr6_3:79488729-79488748 | None:intergenic | 55.0% | |
| CAACAGGCAGCTCTTCCACA+AGG | + | chr6_3:79488727-79488746 | Msa0960260:intron | 55.0% | |
| GAAGCAGCTGCCATGACAGC+TGG | - | chr6_3:79487639-79487658 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 79484320 | 79489354 | 79484320 | ID=Msa0960260;Name=Msa0960260 |
| chr6_3 | mRNA | 79484320 | 79489354 | 79484320 | ID=Msa0960260-mRNA-1;Parent=Msa0960260;Name=Msa0960260-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.8|0.83|1|0.8|0.83|6|371|584 |
| chr6_3 | exon | 79484320 | 79485436 | 79484320 | ID=Msa0960260-mRNA-1:exon:14156;Parent=Msa0960260-mRNA-1 |
| chr6_3 | exon | 79485848 | 79486097 | 79485848 | ID=Msa0960260-mRNA-1:exon:14157;Parent=Msa0960260-mRNA-1 |
| chr6_3 | exon | 79486263 | 79486348 | 79486263 | ID=Msa0960260-mRNA-1:exon:14158;Parent=Msa0960260-mRNA-1 |
| chr6_3 | exon | 79487550 | 79487707 | 79487550 | ID=Msa0960260-mRNA-1:exon:14159;Parent=Msa0960260-mRNA-1 |
| chr6_3 | exon | 79488733 | 79488809 | 79488733 | ID=Msa0960260-mRNA-1:exon:14160;Parent=Msa0960260-mRNA-1 |
| chr6_3 | exon | 79488917 | 79489354 | 79488917 | ID=Msa0960260-mRNA-1:exon:14161;Parent=Msa0960260-mRNA-1 |
| chr6_3 | CDS | 79484320 | 79485436 | 79484320 | ID=Msa0960260-mRNA-1:cds;Parent=Msa0960260-mRNA-1 |
| chr6_3 | CDS | 79485848 | 79486097 | 79485848 | ID=Msa0960260-mRNA-1:cds;Parent=Msa0960260-mRNA-1 |
| chr6_3 | CDS | 79486263 | 79486348 | 79486263 | ID=Msa0960260-mRNA-1:cds;Parent=Msa0960260-mRNA-1 |
| chr6_3 | CDS | 79487550 | 79487707 | 79487550 | ID=Msa0960260-mRNA-1:cds;Parent=Msa0960260-mRNA-1 |
| chr6_3 | CDS | 79488733 | 79488809 | 79488733 | ID=Msa0960260-mRNA-1:cds;Parent=Msa0960260-mRNA-1 |
| chr6_3 | CDS | 79488917 | 79488983 | 79488917 | ID=Msa0960260-mRNA-1:cds;Parent=Msa0960260-mRNA-1 |
| chr6_3 | three_prime_UTR | 79488984 | 79489354 | 79488984 | ID=Msa0960260-mRNA-1:three_prime_utr;Parent=Msa0960260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
