Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994720 | XP_003619829.1 | 95.861 | 604 | 5 | 3 | 1 | 584 | 1 | 604 | 0.0 | 1174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994720 | sp|Q5SMQ9|PIN1A_ORYSJ | 71.266 | 616 | 124 | 11 | 1 | 584 | 1 | 595 | 0.0 | 864 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994720 | Q8GV74 | 95.861 | 604 | 5 | 3 | 1 | 584 | 1 | 604 | 0.0 | 1174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014770 | Msa0994720 | 0.803345 | 3.644591e-49 | -8.615850e-47 |
| Msa0017670 | Msa0994720 | 0.807874 | 4.084812e-50 | -8.615850e-47 |
| Msa0025160 | Msa0994720 | 0.814480 | 1.508083e-51 | -8.615850e-47 |
| Msa0032460 | Msa0994720 | 0.832421 | 9.545993e-56 | -8.615850e-47 |
| Msa0033220 | Msa0994720 | 0.801926 | 7.149692e-49 | -8.615850e-47 |
| Msa0072520 | Msa0994720 | 0.809157 | 2.174158e-50 | -8.615850e-47 |
| Msa0079880 | Msa0994720 | 0.803684 | 3.099876e-49 | -8.615850e-47 |
| Msa0080030 | Msa0994720 | 0.804467 | 2.130496e-49 | -8.615850e-47 |
| Msa0098040 | Msa0994720 | 0.805346 | 1.395315e-49 | -8.615850e-47 |
| Msa0108880 | Msa0994720 | 0.815681 | 8.163771e-52 | -8.615850e-47 |
| Msa0610690 | Msa0994720 | 0.803984 | 2.684753e-49 | -8.615850e-47 |
| Msa0619710 | Msa0994720 | 0.801855 | 7.393772e-49 | -8.615850e-47 |
| Msa0703950 | Msa0994720 | 0.805355 | 1.389364e-49 | -8.615850e-47 |
| Msa0780910 | Msa0994720 | 0.804142 | 2.489880e-49 | -8.615850e-47 |
| Msa0792370 | Msa0994720 | 0.801196 | 1.009236e-48 | -8.615850e-47 |
| Msa0795750 | Msa0994720 | 0.801132 | 1.040211e-48 | -8.615850e-47 |
| Msa0811690 | Msa0994720 | 0.823796 | 1.141955e-53 | -8.615850e-47 |
| Msa0146650 | Msa0994720 | 0.811933 | 5.464885e-51 | -8.615850e-47 |
| Msa0173290 | Msa0994720 | 0.823295 | 1.495655e-53 | -8.615850e-47 |
| Msa0176060 | Msa0994720 | 0.807280 | 5.459373e-50 | -8.615850e-47 |
| Msa0185960 | Msa0994720 | 0.824505 | 7.785246e-54 | -8.615850e-47 |
| Msa0457570 | Msa0994720 | 0.813860 | 2.066465e-51 | -8.615850e-47 |
| Msa0468700 | Msa0994720 | 0.803202 | 3.902104e-49 | -8.615850e-47 |
| Msa0479320 | Msa0994720 | 0.816306 | 5.918034e-52 | -8.615850e-47 |
| Msa0994720 | Msa1040150 | 0.819519 | 1.113252e-52 | -8.615850e-47 |
| Msa0994720 | Msa1042190 | 0.803846 | 2.868526e-49 | -8.615850e-47 |
| Msa0994720 | Msa1078820 | 0.811710 | 6.109975e-51 | -8.615850e-47 |
| Msa0994720 | Msa1105640 | 0.800976 | 1.119596e-48 | -8.615850e-47 |
| Msa0994720 | Msa1123970 | 0.819108 | 1.380824e-52 | -8.615850e-47 |
| Msa0994720 | Msa1128130 | 0.801617 | 8.273425e-49 | -8.615850e-47 |
| Msa0994720 | Msa1167470 | 0.812060 | 5.126753e-51 | -8.615850e-47 |
| Msa0994720 | Msa1169650 | 0.815860 | 7.447071e-52 | -8.615850e-47 |
| Msa0994720 | Msa1194240 | 0.831908 | 1.278539e-55 | -8.615850e-47 |
| Msa0994720 | Msa1327800 | 0.817555 | 3.103243e-52 | -8.615850e-47 |
| Msa0994720 | Msa1349690 | 0.829257 | 5.694458e-55 | -8.615850e-47 |
| Msa0994720 | Msa1358290 | 0.824726 | 6.902736e-54 | -8.615850e-47 |
| Msa0994720 | Msa1392740 | 0.824151 | 9.428352e-54 | -8.615850e-47 |
| Msa0994720 | Msa1407840 | 0.823732 | 1.182087e-53 | -8.615850e-47 |
| Msa0994720 | Msa1409410 | 0.829269 | 5.656143e-55 | -8.615850e-47 |
| Msa0994720 | Msa1417370 | 0.805356 | 1.388954e-49 | -8.615850e-47 |
| Msa0994720 | Msa1437810 | 0.822655 | 2.108676e-53 | -8.615850e-47 |
| Msa0300680 | Msa0994720 | 0.813305 | 2.738284e-51 | -8.615850e-47 |
| Msa0307670 | Msa0994720 | 0.804445 | 2.153380e-49 | -8.615850e-47 |
| Msa0330520 | Msa0994720 | 0.815511 | 8.905064e-52 | -8.615850e-47 |
| Msa0342840 | Msa0994720 | 0.801221 | 9.976014e-49 | -8.615850e-47 |
| Msa0514580 | Msa0994720 | 0.804835 | 1.784621e-49 | -8.615850e-47 |
| Msa0579160 | Msa0994720 | 0.800181 | 1.625814e-48 | -8.615850e-47 |
| Msa0851850 | Msa0994720 | 0.818486 | 1.912068e-52 | -8.615850e-47 |
| Msa0894790 | Msa0994720 | 0.912635 | 1.553835e-83 | -8.615850e-47 |
| Msa0921590 | Msa0994720 | 0.918053 | 2.503911e-86 | -8.615850e-47 |
| Msa0960260 | Msa0994720 | 0.895164 | 1.243308e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994720 | MtrunA17_Chr6g0478431 | 95.861 | 604 | 5 | 3 | 1 | 584 | 1 | 604 | 0.0 | 1174 |
| Msa0994720 | MtrunA17_Chr7g0255941 | 68.006 | 622 | 130 | 12 | 1 | 584 | 1 | 591 | 0.0 | 804 |
| Msa0994720 | MtrunA17_Chr4g0044181 | 61.333 | 675 | 154 | 13 | 1 | 584 | 1 | 659 | 0.0 | 766 |
| Msa0994720 | MtrunA17_Chr8g0393111 | 69.085 | 579 | 92 | 11 | 1 | 554 | 1 | 517 | 0.0 | 748 |
| Msa0994720 | MtrunA17_Chr1g0160461 | 63.422 | 637 | 164 | 12 | 1 | 584 | 1 | 621 | 0.0 | 744 |
| Msa0994720 | MtrunA17_Chr4g0071571 | 59.843 | 635 | 194 | 11 | 1 | 584 | 1 | 625 | 0.0 | 714 |
| Msa0994720 | MtrunA17_Chr1g0159341 | 50.423 | 591 | 222 | 11 | 1 | 584 | 1 | 527 | 1.21e-176 | 510 |
| Msa0994720 | MtrunA17_Chr2g0298971 | 40.333 | 600 | 238 | 16 | 1 | 563 | 1 | 517 | 2.50e-131 | 394 |
| Msa0994720 | MtrunA17_Chr4g0071551 | 71.831 | 213 | 59 | 1 | 1 | 212 | 1 | 213 | 1.93e-109 | 326 |
| Msa0994720 | MtrunA17_Chr4g0071561 | 48.295 | 352 | 126 | 8 | 228 | 560 | 2 | 316 | 1.56e-90 | 282 |
| Msa0994720 | MtrunA17_Chr7g0216571 | 56.915 | 188 | 70 | 2 | 397 | 584 | 191 | 367 | 1.94e-62 | 210 |
| Msa0994720 | MtrunA17_Chr7g0216571 | 57.407 | 162 | 69 | 0 | 1 | 162 | 12 | 173 | 1.33e-55 | 192 |
| Msa0994720 | MtrunA17_Chr6g0452821 | 53.804 | 184 | 77 | 1 | 401 | 584 | 185 | 360 | 2.70e-61 | 207 |
| Msa0994720 | MtrunA17_Chr6g0452821 | 57.595 | 158 | 66 | 1 | 1 | 157 | 1 | 158 | 3.68e-54 | 187 |
| Msa0994720 | MtrunA17_Chr7g0249141 | 42.857 | 210 | 111 | 2 | 373 | 582 | 159 | 359 | 3.13e-52 | 182 |
| Msa0994720 | MtrunA17_Chr7g0249141 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.72e-49 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994720 | AT1G73590.1 | 71.090 | 633 | 123 | 11 | 1 | 584 | 1 | 622 | 0.0 | 860 |
| Msa0994720 | AT2G01420.1 | 61.551 | 632 | 175 | 13 | 1 | 584 | 1 | 612 | 0.0 | 738 |
| Msa0994720 | AT2G01420.2 | 61.478 | 636 | 173 | 13 | 1 | 584 | 1 | 616 | 0.0 | 735 |
| Msa0994720 | AT1G23080.3 | 63.477 | 627 | 174 | 11 | 1 | 584 | 1 | 615 | 0.0 | 732 |
| Msa0994720 | AT1G23080.4 | 63.477 | 627 | 174 | 11 | 1 | 584 | 1 | 615 | 0.0 | 732 |
| Msa0994720 | AT1G70940.1 | 61.621 | 654 | 167 | 14 | 1 | 584 | 1 | 640 | 0.0 | 731 |
| Msa0994720 | AT1G23080.1 | 63.233 | 631 | 173 | 12 | 1 | 584 | 1 | 619 | 0.0 | 730 |
| Msa0994720 | AT5G57090.1 | 58.488 | 648 | 204 | 10 | 1 | 584 | 1 | 647 | 0.0 | 711 |
| Msa0994720 | AT1G23080.2 | 60.227 | 528 | 155 | 12 | 1 | 485 | 1 | 516 | 0.0 | 578 |
| Msa0994720 | AT2G01420.3 | 57.914 | 537 | 154 | 13 | 1 | 485 | 1 | 517 | 0.0 | 568 |
| Msa0994720 | AT5G57090.2 | 55.759 | 547 | 177 | 10 | 102 | 584 | 2 | 547 | 0.0 | 551 |
| Msa0994720 | AT1G77110.1 | 49.336 | 602 | 255 | 12 | 1 | 584 | 1 | 570 | 0.0 | 532 |
| Msa0994720 | AT1G77110.2 | 48.966 | 580 | 246 | 12 | 1 | 562 | 1 | 548 | 1.88e-172 | 500 |
| Msa0994720 | AT5G15100.1 | 62.195 | 164 | 62 | 0 | 421 | 584 | 204 | 367 | 2.00e-62 | 210 |
| Msa0994720 | AT5G15100.1 | 49.091 | 165 | 79 | 1 | 1 | 160 | 1 | 165 | 3.00e-44 | 161 |
| Msa0994720 | AT5G16530.2 | 54.777 | 157 | 71 | 0 | 1 | 157 | 1 | 157 | 4.88e-53 | 184 |
| Msa0994720 | AT5G16530.2 | 49.635 | 137 | 69 | 0 | 427 | 563 | 192 | 328 | 1.47e-41 | 153 |
| Msa0994720 | AT5G16530.1 | 54.777 | 157 | 71 | 0 | 1 | 157 | 1 | 157 | 1.23e-52 | 184 |
| Msa0994720 | AT5G16530.1 | 52.000 | 150 | 72 | 0 | 430 | 579 | 195 | 344 | 1.63e-49 | 175 |
Find 123 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATAAACTCTAATTTAAT+TGG | 0.118206 | 6_4:+69908352 | None:intergenic |
| TCTTATTTCTTCTTGCTATT+TGG | 0.135991 | 6_4:-69913196 | Msa0994720:CDS |
| ATGGGAATTCCTTTACTTAA+AGG | 0.161203 | 6_4:-69913095 | Msa0994720:CDS |
| TCTTGTGTACTACATCTTAA+TGG | 0.199474 | 6_4:-69908730 | Msa0994720:CDS |
| GACTAGGCTTATATTGATTA+TGG | 0.205854 | 6_4:-69911772 | Msa0994720:CDS |
| AACACTTACTCTAGCTTAAT+TGG | 0.219273 | 6_4:-69911723 | Msa0994720:CDS |
| AATGATGTTGTTAATAATTA+TGG | 0.220789 | 6_4:-69912618 | Msa0994720:CDS |
| CTTGGTCCTTGGTTTCATTC+AGG | 0.239575 | 6_4:-69911695 | Msa0994720:intron |
| CTTCCAAACACTTTGGTTAT+GGG | 0.260587 | 6_4:-69913113 | Msa0994720:CDS |
| ACTTCCAAACACTTTGGTTA+TGG | 0.265129 | 6_4:-69913114 | Msa0994720:CDS |
| AGACACTCAAGAAGACTATT+TGG | 0.279261 | 6_4:-69911910 | Msa0994720:CDS |
| CTTTCATGTTGCCGTTGTTC+AGG | 0.296518 | 6_4:-69909998 | Msa0994720:intron |
| GTAGCTATGATCTTAGCTTA+TGG | 0.302571 | 6_4:-69913386 | Msa0994720:CDS |
| CTTGTGTACTACATCTTAAT+GGG | 0.304181 | 6_4:-69908729 | Msa0994720:CDS |
| CACCCTGTGCTTAGAATATC+AGG | 0.308657 | 6_4:+69908893 | None:intergenic |
| TTTGTAGGTGAAAACATTCC+TGG | 0.314810 | 6_4:+69912495 | None:intergenic |
| CCATTCTAAACAACCCCTTT+TGG | 0.316887 | 6_4:+69913163 | None:intergenic |
| AAGATCTTCATATGTTTGTT+TGG | 0.346836 | 6_4:-69912395 | Msa0994720:CDS |
| ATTAAGCTAGAGTAAGTGTT+TGG | 0.363628 | 6_4:+69911726 | None:intergenic |
| TAGCTTATGGATCAGTAAAA+TGG | 0.367227 | 6_4:-69913373 | Msa0994720:CDS |
| CCAAAAGGGGTTGTTTAGAA+TGG | 0.369590 | 6_4:-69913163 | Msa0994720:CDS |
| GGAAATAGACTTTGCTATAA+TGG | 0.370605 | 6_4:+69911222 | None:intergenic |
| GGCTTATATTGATTATGGTT+TGG | 0.374310 | 6_4:-69911767 | Msa0994720:CDS |
| ATTCCCATAACCAAAGTGTT+TGG | 0.375667 | 6_4:+69913110 | None:intergenic |
| TCTTCATAATTAGAAGGTCT+TGG | 0.376111 | 6_4:+69912567 | None:intergenic |
| CCTTTACTTAAAGGAATGTA+TGG | 0.377284 | 6_4:-69913086 | Msa0994720:CDS |
| AATTGGTCTCACTTGGTCCT+TGG | 0.382961 | 6_4:-69911706 | Msa0994720:CDS |
| GAGAAAGATGAATTCAGCTT+TGG | 0.386961 | 6_4:-69911888 | Msa0994720:CDS |
| TCAGCATTAGTAAGATTAGA+AGG | 0.389801 | 6_4:+69912750 | None:intergenic |
| GCTTCTTCTTCATAATTAGA+AGG | 0.394539 | 6_4:+69912561 | None:intergenic |
| AAGTCCTGCATCTGACAGTA+TGG | 0.396661 | 6_4:+69911201 | None:intergenic |
| TAAAATTCACGTGTGGAGAT+TGG | 0.397967 | 6_4:-69908667 | Msa0994720:three_prime_UTR |
| TTGTTCTTCAATGTATCATT+TGG | 0.400452 | 6_4:-69913031 | Msa0994720:CDS |
| TCACCTGTCTCTGATGTGTT+TGG | 0.400913 | 6_4:-69912360 | Msa0994720:CDS |
| GCAGCTGCTTCATTTGCTGT+TGG | 0.404122 | 6_4:-69910036 | Msa0994720:CDS |
| GGTGAAAACATTCCTGGATT+AGG | 0.413247 | 6_4:+69912501 | None:intergenic |
| ATGTAGTACACAAGAGTAAT+GGG | 0.415483 | 6_4:+69908738 | None:intergenic |
| TATTCCTTAGCAAAGACAAA+TGG | 0.416542 | 6_4:+69908926 | None:intergenic |
| TTGGAGCAATTTCTCCAAAA+GGG | 0.423202 | 6_4:-69913177 | Msa0994720:CDS |
| CTAGCTTAATTGGTCTCACT+TGG | 0.425011 | 6_4:-69911713 | Msa0994720:CDS |
| AGCCTAGTCATCACACTTGC+TGG | 0.427352 | 6_4:+69911786 | None:intergenic |
| ATCCTTACAAAATGAACCTT+AGG | 0.436200 | 6_4:-69913253 | Msa0994720:CDS |
| CCTTGTTGGTCCAGCTGTCA+TGG | 0.441793 | 6_4:-69910058 | Msa0994720:CDS |
| TCATTTGCTGTTGGACTCAA+AGG | 0.446394 | 6_4:-69910027 | Msa0994720:CDS |
| GAACAGTTTCCTGACACTGC+TGG | 0.447998 | 6_4:-69912954 | Msa0994720:CDS |
| GCATAAACTCTAATTTAATT+GGG | 0.448227 | 6_4:+69908353 | None:intergenic |
| AAGCATCACGAGAATTGAAT+AGG | 0.448777 | 6_4:-69908553 | Msa0994720:three_prime_UTR |
| TTTGGAGCAATTTCTCCAAA+AGG | 0.452388 | 6_4:-69913178 | Msa0994720:CDS |
| CCATACATTCCTTTAAGTAA+AGG | 0.457088 | 6_4:+69913086 | None:intergenic |
| GATTGTTTGATGCTATGAAA+TGG | 0.458601 | 6_4:+69913273 | None:intergenic |
| TGCAATGACTTGGTTGGTTG+AGG | 0.463743 | 6_4:-69908635 | Msa0994720:three_prime_UTR |
| GAATTCAGCTTTGGTAATAG+AGG | 0.466027 | 6_4:-69911879 | Msa0994720:CDS |
| ATGGGTGTGAGATTCCTTGT+TGG | 0.466818 | 6_4:-69910072 | Msa0994720:CDS |
| CTCAACACTTCCAAACACTT+TGG | 0.468618 | 6_4:-69913120 | Msa0994720:CDS |
| TGATTCTGATGTCATGTCAT+TGG | 0.471853 | 6_4:-69912910 | Msa0994720:CDS |
| CCTGTCTCTGATGTGTTTGG+TGG | 0.474026 | 6_4:-69912357 | Msa0994720:CDS |
| TTGATTCCTGAACATTGATC+AGG | 0.476336 | 6_4:+69913335 | None:intergenic |
| AACTAGAGCCTCTAGGTGTA+GGG | 0.478121 | 6_4:+69912700 | None:intergenic |
| GAAGCAGCTGCCATGACAGC+TGG | 0.484986 | 6_4:+69910048 | None:intergenic |
| GGTGGAAGAAACTCAAACTT+TGG | 0.486326 | 6_4:-69912645 | Msa0994720:CDS |
| AAACTAGAGCCTCTAGGTGT+AGG | 0.486546 | 6_4:+69912699 | None:intergenic |
| ATTCCTTAGCAAAGACAAAT+GGG | 0.487126 | 6_4:+69908927 | None:intergenic |
| CAACATGAAGGTGGTGAGAA+AGG | 0.488878 | 6_4:-69911837 | Msa0994720:CDS |
| AACTATCCTGCACCTAATCC+AGG | 0.489266 | 6_4:-69912513 | Msa0994720:CDS |
| ACAATGGAACCAGCAGTGTC+AGG | 0.491234 | 6_4:+69912945 | None:intergenic |
| TATATCTTTGTTCCTTGATG+AGG | 0.493213 | 6_4:+69908389 | None:intergenic |
| ATACTGTCAGATGCAGGACT+TGG | 0.497015 | 6_4:-69911199 | Msa0994720:CDS |
| AACATTCCTGGATTAGGTGC+AGG | 0.502203 | 6_4:+69912507 | None:intergenic |
| TGTCCCATTTGTCTTTGCTA+AGG | 0.502481 | 6_4:-69908930 | Msa0994720:CDS |
| GGCATGGCTATGTTCAGTCT+TGG | 0.502767 | 6_4:-69911178 | Msa0994720:intron |
| GATGTAGTACACAAGAGTAA+TGG | 0.503834 | 6_4:+69908737 | None:intergenic |
| TTGTTAAATGCGCCTCATCA+AGG | 0.504126 | 6_4:-69908401 | Msa0994720:three_prime_UTR |
| GCCACACACAAAAGAGAGAA+AGG | 0.506037 | 6_4:-69908600 | Msa0994720:three_prime_UTR |
| CATCCTGATATTCTAAGCAC+AGG | 0.506231 | 6_4:-69908896 | Msa0994720:CDS |
| GAATGAATGAAATGAAATGA+TGG | 0.513467 | 6_4:-69908701 | Msa0994720:three_prime_UTR |
| AAGATCATAGCTACATAAAG+TGG | 0.519198 | 6_4:+69913395 | None:intergenic |
| GATGCTGAAATCAAAGAAGA+TGG | 0.521178 | 6_4:-69912864 | Msa0994720:CDS |
| TTAGTAAGATTAGAAGGTCT+AGG | 0.522435 | 6_4:+69912756 | None:intergenic |
| ATAGACTTTGCTATAATGGC+AGG | 0.526481 | 6_4:+69911226 | None:intergenic |
| GTGTTTGGTGGACATGACTT+TGG | 0.541105 | 6_4:-69912345 | Msa0994720:intron |
| CACCAGCAAGTGTGATGACT+AGG | 0.542846 | 6_4:-69911788 | Msa0994720:CDS |
| ATTTCCATACTGTCAGATGC+AGG | 0.544656 | 6_4:-69911205 | Msa0994720:CDS |
| TTGGTAATAGAGGGATGGAA+AGG | 0.548727 | 6_4:-69911869 | Msa0994720:CDS |
| ATTGGATGGTAGAACACCAT+TGG | 0.552263 | 6_4:-69912892 | Msa0994720:CDS |
| ATTTCAGCATCAGTTTCCAA+TGG | 0.555165 | 6_4:+69912876 | None:intergenic |
| GCATATTCCATGCAATGACT+TGG | 0.556473 | 6_4:-69908645 | Msa0994720:three_prime_UTR |
| CAGCAAAGAGTGCAACAAAA+CGG | 0.557146 | 6_4:+69913312 | None:intergenic |
| ATCAACATGGATTGAGACAA+TGG | 0.559862 | 6_4:+69912929 | None:intergenic |
| GGTTTATCTGCTAATTCAAG+AGG | 0.560784 | 6_4:-69912597 | Msa0994720:CDS |
| TGGTAATAGAGGGATGGAAA+GGG | 0.562703 | 6_4:-69911868 | Msa0994720:CDS |
| GGTGGTGAGAAAGGTGGAGA+TGG | 0.565305 | 6_4:-69911828 | Msa0994720:CDS |
| AATTCAGCTTTGGTAATAGA+GGG | 0.567372 | 6_4:-69911878 | Msa0994720:CDS |
| CAACCAACCAAGTCATTGCA+TGG | 0.570606 | 6_4:+69908638 | None:intergenic |
| GTTAATGCTAAGAAGAGTAA+TGG | 0.571263 | 6_4:-69912438 | Msa0994720:CDS |
| CCACCAAACACATCAGAGAC+AGG | 0.575955 | 6_4:+69912357 | None:intergenic |
| TGGAGCAATTTCTCCAAAAG+GGG | 0.576280 | 6_4:-69913176 | Msa0994720:CDS |
| TGATTAAAACTAGAGCCTCT+AGG | 0.580637 | 6_4:+69912693 | None:intergenic |
| CAGCTTTGGTAATAGAGGGA+TGG | 0.582859 | 6_4:-69911874 | Msa0994720:CDS |
| CTTATGGATCAGTAAAATGG+TGG | 0.591247 | 6_4:-69913370 | Msa0994720:CDS |
| CATCACGAGAATTGAATAGG+AGG | 0.593519 | 6_4:-69908550 | Msa0994720:three_prime_UTR |
| TAAACTCTAATTTAATTGGG+AGG | 0.602021 | 6_4:+69908356 | None:intergenic |
| CATGAAGGTGGTGAGAAAGG+TGG | 0.607207 | 6_4:-69911834 | Msa0994720:CDS |
| ATGAAATGGAATGAAAGAAG+TGG | 0.614917 | 6_4:+69913287 | None:intergenic |
| ATTCCATGCAATGACTTGGT+TGG | 0.619272 | 6_4:-69908641 | Msa0994720:three_prime_UTR |
| GTCAGATGCAGGACTTGGCA+TGG | 0.620374 | 6_4:-69911194 | Msa0994720:CDS |
| TGTTTGAGTTTAGAGGAGCA+AGG | 0.624922 | 6_4:-69912989 | Msa0994720:CDS |
| CAACAGGCAGCTCTTCCACA+AGG | 0.629681 | 6_4:-69908956 | Msa0994720:intron |
| AGGGAAATGAATCAACATGA+AGG | 0.630340 | 6_4:-69911849 | Msa0994720:CDS |
| CCATGACAGCTGGACCAACA+AGG | 0.634447 | 6_4:+69910058 | None:intergenic |
| TCTGATGTCATGTCATTGGA+TGG | 0.636707 | 6_4:-69912906 | Msa0994720:CDS |
| CTAGTCATCACACTTGCTGG+TGG | 0.639719 | 6_4:+69911789 | None:intergenic |
| GATTTCATAAAATTCACGTG+TGG | 0.645139 | 6_4:-69908674 | Msa0994720:three_prime_UTR |
| AACATACCTGAATGAAACCA+AGG | 0.645528 | 6_4:+69911689 | None:intergenic |
| TCAAGAAACCCTACACCTAG+AGG | 0.654815 | 6_4:-69912708 | Msa0994720:CDS |
| AAGAAACAGGACCTGAACAA+CGG | 0.657192 | 6_4:+69909987 | None:intergenic |
| GAAATGAATCAACATGAAGG+TGG | 0.659006 | 6_4:-69911846 | Msa0994720:CDS |
| CTACCATGTCATGACAGCAA+TGG | 0.661376 | 6_4:-69913420 | Msa0994720:CDS |
| ACATGACATCAGAATCAACA+TGG | 0.668465 | 6_4:+69912916 | None:intergenic |
| ACAAATGGGACAATTCCTTG+TGG | 0.669772 | 6_4:+69908941 | None:intergenic |
| GCACCATTGCTGTCATGACA+TGG | 0.674152 | 6_4:+69913417 | None:intergenic |
| ATCCTGATATTCTAAGCACA+GGG | 0.676564 | 6_4:-69908895 | Msa0994720:intron |
| TTGTGTACTACATCTTAATG+GGG | 0.695067 | 6_4:-69908728 | Msa0994720:CDS |
| ATTTACTCAAGAAGATCACA+AGG | 0.697954 | 6_4:-69912795 | Msa0994720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTATCAAAATTAGAA+TGG | + | chr6_4:69910803-69910822 | None:intergenic | 10.0% |
| !!! | ATCATAAAATTTAAAATATG+AGG | + | chr6_4:69911476-69911495 | None:intergenic | 10.0% |
| !! | ATTAAAAGTGAATAAAAAAA+AGG | + | chr6_4:69911906-69911925 | None:intergenic | 10.0% |
| !! | AATAAATAAATAAATTTCAG+TGG | - | chr6_4:69912006-69912025 | Msa0994720:intron | 10.0% |
| !! | CTTCATATAAATATATATTT+GGG | + | chr6_4:69912340-69912359 | None:intergenic | 10.0% |
| !! | TCTTCATATAAATATATATT+TGG | + | chr6_4:69912341-69912360 | None:intergenic | 10.0% |
| !! | TCTTAAAAACTATAATATTA+TGG | - | chr6_4:69912550-69912569 | Msa0994720:CDS | 10.0% |
| !!! | AATTACCATTAAAATTTTAT+AGG | - | chr6_4:69912581-69912600 | Msa0994720:CDS | 10.0% |
| !!! | ATTACCATTAAAATTTTATA+GGG | - | chr6_4:69912582-69912601 | Msa0994720:CDS | 10.0% |
| !! | AATGATGTTGTTAATAATTA+TGG | - | chr6_4:69909172-69909191 | Msa0994720:intron | 15.0% |
| !! | ATGTAAAAAATCAAACTTTA+AGG | + | chr6_4:69909801-69909820 | None:intergenic | 15.0% |
| !!! | TATTAGTTTGATTTTTATGT+TGG | - | chr6_4:69909820-69909839 | Msa0994720:intron | 15.0% |
| !!! | CTTTTTTAAATATGAATTGT+TGG | + | chr6_4:69912104-69912123 | None:intergenic | 15.0% |
| !! | TCAATTAGTTATTTAAAAAG+TGG | - | chr6_4:69912130-69912149 | Msa0994720:intron | 15.0% |
| !!! | TCCTTATTTACATTTTTATA+GGG | - | chr6_4:69912467-69912486 | Msa0994720:CDS | 15.0% |
| !!! | GTAAAAAGTTTTCAAAATAA+GGG | - | chr6_4:69912523-69912542 | Msa0994720:CDS | 15.0% |
| !! | AATTGAAGTAAAATAATGAA+GGG | + | chr6_4:69912955-69912974 | None:intergenic | 15.0% |
| !! | AAATTGAAGTAAAATAATGA+AGG | + | chr6_4:69912956-69912975 | None:intergenic | 15.0% |
| !! | GAAAAAGTAAAATAAATTCT+TGG | + | chr6_4:69913269-69913288 | None:intergenic | 15.0% |
| !! | TGATAGTTCATTAAAAAAAA+AGG | + | chr6_4:69913311-69913330 | None:intergenic | 15.0% |
| !!! | TACTGATTTTTATTCTATGA+TGG | - | chr6_4:69909120-69909139 | Msa0994720:intron | 20.0% |
| !!! | ACTGATTTTTATTCTATGAT+GGG | - | chr6_4:69909121-69909140 | Msa0994720:intron | 20.0% |
| !!! | AAAAACTATTTTCATATGCA+AGG | + | chr6_4:69909700-69909719 | None:intergenic | 20.0% |
| !!! | AAATTAGCTTTAAAAGATCT+TGG | - | chr6_4:69910279-69910298 | Msa0994720:intron | 20.0% |
| !!! | AATCTTTTTTCACTCTTTTA+AGG | - | chr6_4:69910954-69910973 | Msa0994720:intron | 20.0% |
| !! | TCAAATTTCAACATATTTAG+AGG | + | chr6_4:69911028-69911047 | None:intergenic | 20.0% |
| !!! | TTGTATTGGTTATGTTAAAA+GGG | + | chr6_4:69911851-69911870 | None:intergenic | 20.0% |
| !!! | ATTGTATTGGTTATGTTAAA+AGG | + | chr6_4:69911852-69911871 | None:intergenic | 20.0% |
| !! | AACAATAAACTAACTTATCT+TGG | + | chr6_4:69911973-69911992 | None:intergenic | 20.0% |
| !! | AATAAATAAATTTCAGTGGT+TGG | - | chr6_4:69912010-69912029 | Msa0994720:intron | 20.0% |
| !!! | TAGAAACTTGTAATTTTGTA+GGG | + | chr6_4:69912412-69912431 | None:intergenic | 20.0% |
| !!! | TTAGAAACTTGTAATTTTGT+AGG | + | chr6_4:69912413-69912432 | None:intergenic | 20.0% |
| !!! | GTCCTTATTTACATTTTTAT+AGG | - | chr6_4:69912466-69912485 | Msa0994720:CDS | 20.0% |
| !! | TCCCTATAAAAATGTAAATA+AGG | + | chr6_4:69912471-69912490 | None:intergenic | 20.0% |
| !!! | CATTTTTATAGGGATTATTT+TGG | - | chr6_4:69912477-69912496 | Msa0994720:CDS | 20.0% |
| !!! | GAAAACTTTTTACCAAAAAT+TGG | + | chr6_4:69912516-69912535 | None:intergenic | 20.0% |
| !!! | GGTAAAAAGTTTTCAAAATA+AGG | - | chr6_4:69912522-69912541 | Msa0994720:CDS | 20.0% |
| !!! | TTAGCCCTATAAAATTTTAA+TGG | + | chr6_4:69912589-69912608 | None:intergenic | 20.0% |
| !! | CCGATAATGAAAATAATTAA+GGG | + | chr6_4:69912652-69912671 | None:intergenic | 20.0% |
| !!! | CCCTTAATTATTTTCATTAT+CGG | - | chr6_4:69912649-69912668 | Msa0994720:CDS | 20.0% |
| !! | ACCGATAATGAAAATAATTA+AGG | + | chr6_4:69912653-69912672 | None:intergenic | 20.0% |
| !! | GGAACAAAGATATATAAAAA+TGG | - | chr6_4:69913410-69913429 | Msa0994720:CDS | 20.0% |
| !! | GCATAAACTCTAATTTAATT+GGG | + | chr6_4:69913440-69913459 | None:intergenic | 20.0% |
| !! | AGCATAAACTCTAATTTAAT+TGG | + | chr6_4:69913441-69913460 | None:intergenic | 20.0% |
| !!! | TCTTATTTCTTCTTGCTATT+TGG | - | chr6_4:69908594-69908613 | Msa0994720:three_prime_UTR | 25.0% |
| !!! | TGAATTTTCAGGTAGTTTAA+TGG | - | chr6_4:69908727-69908746 | Msa0994720:CDS | 25.0% |
| ! | TTGTTCTTCAATGTATCATT+TGG | - | chr6_4:69908759-69908778 | Msa0994720:CDS | 25.0% |
| !! | ATGTTTTCACCTACAAATAA+TGG | - | chr6_4:69909301-69909320 | Msa0994720:intron | 25.0% |
| !! | TTTTTGCTACCATTATTTGT+AGG | + | chr6_4:69909313-69909332 | None:intergenic | 25.0% |
| ! | AATAATGGTAGCAAAAATCT+TGG | - | chr6_4:69909316-69909335 | Msa0994720:intron | 25.0% |
| ! | AAGATCTTCATATGTTTGTT+TGG | - | chr6_4:69909395-69909414 | Msa0994720:intron | 25.0% |
| ! | GAAGGTAAAGATAAAAAAGA+AGG | + | chr6_4:69909530-69909549 | None:intergenic | 25.0% |
| ! | CATAGACTGAAAATAGTTTA+CGG | - | chr6_4:69909673-69909692 | Msa0994720:intron | 25.0% |
| !!! | CATTTTGTTTGATGAATTAG+TGG | - | chr6_4:69909847-69909866 | Msa0994720:intron | 25.0% |
| ! | ATGAATACTTACAATTGATG+CGG | + | chr6_4:69910338-69910357 | None:intergenic | 25.0% |
| ! | TGGAATCAATATGAAGAATT+TGG | + | chr6_4:69910489-69910508 | None:intergenic | 25.0% |
| ! | CAAACTATAATCAATCGAAA+TGG | + | chr6_4:69910509-69910528 | None:intergenic | 25.0% |
| !! | TCTTTTCCTGAAAAAGTAAA+AGG | - | chr6_4:69910749-69910768 | Msa0994720:intron | 25.0% |
| ! | TAATGTATAATTCGTTAGTC+AGG | + | chr6_4:69911348-69911367 | None:intergenic | 25.0% |
| !!! | AAAAAAGGAGAGGAATTTTT+TGG | + | chr6_4:69911891-69911910 | None:intergenic | 25.0% |
| ! | AAGTGAATAAAAAAAAGGAG+AGG | + | chr6_4:69911901-69911920 | None:intergenic | 25.0% |
| ! | GTACAAAAATATATGCACTA+TGG | - | chr6_4:69912042-69912061 | Msa0994720:intron | 25.0% |
| ! | ATTTGACTCTATAATCTCAA+GGG | + | chr6_4:69912202-69912221 | None:intergenic | 25.0% |
| ! | AATTTGACTCTATAATCTCA+AGG | + | chr6_4:69912203-69912222 | None:intergenic | 25.0% |
| !!! | TTTTATAGGGATTATTTTGG+AGG | - | chr6_4:69912480-69912499 | Msa0994720:CDS | 25.0% |
| ! | ATATTTGTACAACAAACAGT+TGG | - | chr6_4:69912755-69912774 | Msa0994720:CDS | 25.0% |
| ! | ACAAACAAACATGTTAAATG+TGG | + | chr6_4:69912783-69912802 | None:intergenic | 25.0% |
| !! | TTCATTGGTTAGCATTAAAA+GGG | + | chr6_4:69912982-69913001 | None:intergenic | 25.0% |
| !! | TTTCATTGGTTAGCATTAAA+AGG | + | chr6_4:69912983-69913002 | None:intergenic | 25.0% |
| !! | CTAACCAATGAAACTAATTT+TGG | - | chr6_4:69912990-69913009 | Msa0994720:CDS | 25.0% |
| ! | GAATGAATGAAATGAAATGA+TGG | - | chr6_4:69913089-69913108 | Msa0994720:CDS | 25.0% |
| ! | TAAACTCTAATTTAATTGGG+AGG | + | chr6_4:69913437-69913456 | None:intergenic | 25.0% |
| AAGATCATAGCTACATAAAG+TGG | + | chr6_4:69908398-69908417 | None:intergenic | 30.0% | |
| TAGCTTATGGATCAGTAAAA+TGG | - | chr6_4:69908417-69908436 | Msa0994720:three_prime_UTR | 30.0% | |
| ATGAAATGGAATGAAAGAAG+TGG | + | chr6_4:69908506-69908525 | None:intergenic | 30.0% | |
| GATTGTTTGATGCTATGAAA+TGG | + | chr6_4:69908520-69908539 | None:intergenic | 30.0% | |
| ATCCTTACAAAATGAACCTT+AGG | - | chr6_4:69908537-69908556 | Msa0994720:three_prime_UTR | 30.0% | |
| ! | AACCTAAGGTTCATTTTGTA+AGG | + | chr6_4:69908542-69908561 | None:intergenic | 30.0% |
| ATGGGAATTCCTTTACTTAA+AGG | - | chr6_4:69908695-69908714 | Msa0994720:three_prime_UTR | 30.0% | |
| CCATACATTCCTTTAAGTAA+AGG | + | chr6_4:69908707-69908726 | None:intergenic | 30.0% | |
| CCTTTACTTAAAGGAATGTA+TGG | - | chr6_4:69908704-69908723 | Msa0994720:exon | 30.0% | |
| !! | CTTTTCATGTTTGAGTTTAG+AGG | - | chr6_4:69908794-69908813 | Msa0994720:intron | 30.0% |
| ATTTACTCAAGAAGATCACA+AGG | - | chr6_4:69908995-69909014 | Msa0994720:intron | 30.0% | |
| TTAGTAAGATTAGAAGGTCT+AGG | + | chr6_4:69909037-69909056 | None:intergenic | 30.0% | |
| TCAGCATTAGTAAGATTAGA+AGG | + | chr6_4:69909043-69909062 | None:intergenic | 30.0% | |
| !! | GATTTTTATTCTATGATGGG+TGG | - | chr6_4:69909124-69909143 | Msa0994720:intron | 30.0% |
| TCTTCATAATTAGAAGGTCT+TGG | + | chr6_4:69909226-69909245 | None:intergenic | 30.0% | |
| GCTTCTTCTTCATAATTAGA+AGG | + | chr6_4:69909232-69909251 | None:intergenic | 30.0% | |
| GTTAATGCTAAGAAGAGTAA+TGG | - | chr6_4:69909352-69909371 | Msa0994720:intron | 30.0% | |
| ATAAGTAGCTTATCCAAACA+AGG | + | chr6_4:69909558-69909577 | None:intergenic | 30.0% | |
| TTAAATAAGCGAATTCTACG+AGG | - | chr6_4:69909775-69909794 | Msa0994720:intron | 30.0% | |
| TTTGTTTGATGAATTAGTGG+AGG | - | chr6_4:69909850-69909869 | Msa0994720:intron | 30.0% | |
| TTGTTTGATGAATTAGTGGA+GGG | - | chr6_4:69909851-69909870 | Msa0994720:intron | 30.0% | |
| ! | AATTCAGCTTTGGTAATAGA+GGG | - | chr6_4:69909912-69909931 | Msa0994720:intron | 30.0% |
| ! | GACTAGGCTTATATTGATTA+TGG | - | chr6_4:69910018-69910037 | Msa0994720:CDS | 30.0% |
| ! | GGCTTATATTGATTATGGTT+TGG | - | chr6_4:69910023-69910042 | Msa0994720:CDS | 30.0% |
| ATTAAGCTAGAGTAAGTGTT+TGG | + | chr6_4:69910067-69910086 | None:intergenic | 30.0% | |
| ! | AACACTTACTCTAGCTTAAT+TGG | - | chr6_4:69910067-69910086 | Msa0994720:CDS | 30.0% |
| ! | GAAATTTTACATGTGCAATG+TGG | + | chr6_4:69910153-69910172 | None:intergenic | 30.0% |
| ATTACTACTTCAGGTGATTA+GGG | + | chr6_4:69910196-69910215 | None:intergenic | 30.0% | |
| AATTACTACTTCAGGTGATT+AGG | + | chr6_4:69910197-69910216 | None:intergenic | 30.0% | |
| GTCGTTCATTTCTAATTAGA+TGG | - | chr6_4:69910301-69910320 | Msa0994720:intron | 30.0% | |
| TTGATTGTGTTGTATATTGC+AGG | - | chr6_4:69910526-69910545 | Msa0994720:intron | 30.0% | |
| ! | GGAAATAGACTTTGCTATAA+TGG | + | chr6_4:69910571-69910590 | None:intergenic | 30.0% |
| ATATTTAGAGGAGTTGAGAT+GGG | + | chr6_4:69911016-69911035 | None:intergenic | 30.0% | |
| TATAATTCGTTAGTCAGGTT+CGG | + | chr6_4:69911343-69911362 | None:intergenic | 30.0% | |
| GATTGACTGAAGATATATAG+TGG | - | chr6_4:69911578-69911597 | Msa0994720:intron | 30.0% | |
| TAGTGGTGATACTAATTGAT+TGG | - | chr6_4:69911595-69911614 | Msa0994720:intron | 30.0% | |
| ! | TTTCCACATGCTATGATTTT+TGG | + | chr6_4:69911679-69911698 | None:intergenic | 30.0% |
| GCATGCAATGAATATTGTAT+TGG | + | chr6_4:69911865-69911884 | None:intergenic | 30.0% | |
| TTTCAGTGGTTGGAATTTAT+TGG | - | chr6_4:69912020-69912039 | Msa0994720:intron | 30.0% | |
| AAGTTCAAATTCATTGGTGT+CGG | + | chr6_4:69912176-69912195 | None:intergenic | 30.0% | |
| ! | TCATAATGTTTTCAGTTGAG+TGG | + | chr6_4:69912230-69912249 | None:intergenic | 30.0% |
| !!! | GGACTAAAAGTACCAATTTT+TGG | - | chr6_4:69912501-69912520 | Msa0994720:CDS | 30.0% |
| ! | CTTGAAAACTCATGATTTGT+AGG | - | chr6_4:69912610-69912629 | Msa0994720:CDS | 30.0% |
| ! | TTGGTAATTAGATGCCAAAT+TGG | + | chr6_4:69912810-69912829 | None:intergenic | 30.0% |
| TCTAATTACCAAAAACCAAC+AGG | - | chr6_4:69912818-69912837 | Msa0994720:CDS | 30.0% | |
| ATTCCTTAGCAAAGACAAAT+GGG | + | chr6_4:69912866-69912885 | None:intergenic | 30.0% | |
| TATTCCTTAGCAAAGACAAA+TGG | + | chr6_4:69912867-69912886 | None:intergenic | 30.0% | |
| GAAGTAAAATAATGAAGGGT+AGG | + | chr6_4:69912951-69912970 | None:intergenic | 30.0% | |
| ! | CTCACCAAAATTAGTTTCAT+TGG | + | chr6_4:69912997-69913016 | None:intergenic | 30.0% |
| ATGTAGTACACAAGAGTAAT+GGG | + | chr6_4:69913055-69913074 | None:intergenic | 30.0% | |
| TCTTGTGTACTACATCTTAA+TGG | - | chr6_4:69913060-69913079 | Msa0994720:CDS | 30.0% | |
| CTTGTGTACTACATCTTAAT+GGG | - | chr6_4:69913061-69913080 | Msa0994720:CDS | 30.0% | |
| TTGTGTACTACATCTTAATG+GGG | - | chr6_4:69913062-69913081 | Msa0994720:CDS | 30.0% | |
| GATTTCATAAAATTCACGTG+TGG | - | chr6_4:69913116-69913135 | Msa0994720:CDS | 30.0% | |
| CAAAAGAGAGAAAGGAAAAA+AGG | - | chr6_4:69913198-69913217 | Msa0994720:CDS | 30.0% | |
| !! | GAAAGGAAAAAAGGTGTTAA+AGG | - | chr6_4:69913207-69913226 | Msa0994720:CDS | 30.0% |
| TATATCTTTGTTCCTTGATG+AGG | + | chr6_4:69913404-69913423 | None:intergenic | 30.0% | |
| GTAGCTATGATCTTAGCTTA+TGG | - | chr6_4:69908404-69908423 | Msa0994720:three_prime_UTR | 35.0% | |
| CTTATGGATCAGTAAAATGG+TGG | - | chr6_4:69908420-69908439 | Msa0994720:three_prime_UTR | 35.0% | |
| ! | TTTTCACCTGATCAATGTTC+AGG | - | chr6_4:69908449-69908468 | Msa0994720:three_prime_UTR | 35.0% |
| TTGATTCCTGAACATTGATC+AGG | + | chr6_4:69908458-69908477 | None:intergenic | 35.0% | |
| TATCAGCTGCTAAAAACCTA+AGG | + | chr6_4:69908556-69908575 | None:intergenic | 35.0% | |
| ! | TTTGGAGCAATTTCTCCAAA+AGG | - | chr6_4:69908612-69908631 | Msa0994720:three_prime_UTR | 35.0% |
| TTGGAGCAATTTCTCCAAAA+GGG | - | chr6_4:69908613-69908632 | Msa0994720:three_prime_UTR | 35.0% | |
| ACTTCCAAACACTTTGGTTA+TGG | - | chr6_4:69908676-69908695 | Msa0994720:three_prime_UTR | 35.0% | |
| CTTCCAAACACTTTGGTTAT+GGG | - | chr6_4:69908677-69908696 | Msa0994720:three_prime_UTR | 35.0% | |
| ! | ATTCCCATAACCAAAGTGTT+TGG | + | chr6_4:69908683-69908702 | None:intergenic | 35.0% |
| ! | GGAATGTATGGTGAATTTTC+AGG | - | chr6_4:69908716-69908735 | Msa0994720:exon | 35.0% |
| ! | ATCAACATGGATTGAGACAA+TGG | + | chr6_4:69908864-69908883 | None:intergenic | 35.0% |
| ACATGACATCAGAATCAACA+TGG | + | chr6_4:69908877-69908896 | None:intergenic | 35.0% | |
| TGATTCTGATGTCATGTCAT+TGG | - | chr6_4:69908880-69908899 | Msa0994720:intron | 35.0% | |
| ATTTCAGCATCAGTTTCCAA+TGG | + | chr6_4:69908917-69908936 | None:intergenic | 35.0% | |
| GATGCTGAAATCAAAGAAGA+TGG | - | chr6_4:69908926-69908945 | Msa0994720:CDS | 35.0% | |
| TGATTAAAACTAGAGCCTCT+AGG | + | chr6_4:69909100-69909119 | None:intergenic | 35.0% | |
| !!! | TTTTATTCTATGATGGGTGG+TGG | - | chr6_4:69909127-69909146 | Msa0994720:intron | 35.0% |
| GGTTTATCTGCTAATTCAAG+AGG | - | chr6_4:69909193-69909212 | Msa0994720:intron | 35.0% | |
| TTTGTAGGTGAAAACATTCC+TGG | + | chr6_4:69909298-69909317 | None:intergenic | 35.0% | |
| GTTAAATTGAATGTGTCTCC+TGG | - | chr6_4:69909487-69909506 | Msa0994720:intron | 35.0% | |
| ! | GAAAAAAACCAACCTTTTCC+AGG | + | chr6_4:69909508-69909527 | None:intergenic | 35.0% |
| TTACCTTCTTAGACCTTGTT+TGG | - | chr6_4:69909542-69909561 | Msa0994720:intron | 35.0% | |
| TATCCAAACAAGGTCTAAGA+AGG | + | chr6_4:69909548-69909567 | None:intergenic | 35.0% | |
| AGACACTCAAGAAGACTATT+TGG | - | chr6_4:69909880-69909899 | Msa0994720:intron | 35.0% | |
| GAGAAAGATGAATTCAGCTT+TGG | - | chr6_4:69909902-69909921 | Msa0994720:intron | 35.0% | |
| ! | GAATTCAGCTTTGGTAATAG+AGG | - | chr6_4:69909911-69909930 | Msa0994720:intron | 35.0% |
| AGGGAAATGAATCAACATGA+AGG | - | chr6_4:69909941-69909960 | Msa0994720:intron | 35.0% | |
| GAAATGAATCAACATGAAGG+TGG | - | chr6_4:69909944-69909963 | Msa0994720:intron | 35.0% | |
| AACATACCTGAATGAAACCA+AGG | + | chr6_4:69910104-69910123 | None:intergenic | 35.0% | |
| TTTGATATGATCACAATGCG+CGG | + | chr6_4:69910366-69910385 | None:intergenic | 35.0% | |
| ! | ATAGACTTTGCTATAATGGC+AGG | + | chr6_4:69910567-69910586 | None:intergenic | 35.0% |
| !!! | GCTCTACCTTTTACTTTTTC+AGG | + | chr6_4:69910758-69910777 | None:intergenic | 35.0% |
| CATATTTAGAGGAGTTGAGA+TGG | + | chr6_4:69911017-69911036 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACAGGTTTGTTCA+TGG | - | chr6_4:69911645-69911664 | Msa0994720:intron | 35.0% |
| CAACCAAAAATCATAGCATG+TGG | - | chr6_4:69911673-69911692 | Msa0994720:intron | 35.0% | |
| !! | TTCCATTGCAGCTTTTTCTA+TGG | - | chr6_4:69911699-69911718 | Msa0994720:CDS | 35.0% |
| !! | TCCATTGCAGCTTTTTCTAT+GGG | - | chr6_4:69911700-69911719 | Msa0994720:CDS | 35.0% |
| AGAAGACAGAGAAAAGAAAC+AGG | + | chr6_4:69911819-69911838 | None:intergenic | 35.0% | |
| !!! | AAGGAGAGGAATTTTTTGGA+GGG | + | chr6_4:69911887-69911906 | None:intergenic | 35.0% |
| !!! | AAAGGAGAGGAATTTTTTGG+AGG | + | chr6_4:69911888-69911907 | None:intergenic | 35.0% |
| GGTATCTTTGCAACATTCTT+TGG | - | chr6_4:69912063-69912082 | Msa0994720:intron | 35.0% | |
| GGGTTGAAGTTCAAATTCAT+TGG | + | chr6_4:69912182-69912201 | None:intergenic | 35.0% | |
| GTTTGTTTGTCTGTCCAATT+TGG | - | chr6_4:69912793-69912812 | Msa0994720:CDS | 35.0% | |
| ATCCTGATATTCTAAGCACA+GGG | - | chr6_4:69912895-69912914 | Msa0994720:CDS | 35.0% | |
| !!! | TGAGAATGCAGTGTCATTTT+TGG | - | chr6_4:69913013-69913032 | Msa0994720:CDS | 35.0% |
| !!! | GAGAATGCAGTGTCATTTTT+GGG | - | chr6_4:69913014-69913033 | Msa0994720:CDS | 35.0% |
| GATGTAGTACACAAGAGTAA+TGG | + | chr6_4:69913056-69913075 | None:intergenic | 35.0% | |
| TAAAATTCACGTGTGGAGAT+TGG | - | chr6_4:69913123-69913142 | Msa0994720:CDS | 35.0% | |
| AAGCATCACGAGAATTGAAT+AGG | - | chr6_4:69913237-69913256 | Msa0994720:CDS | 35.0% | |
| ! | CAGCAAAGAGTGCAACAAAA+CGG | + | chr6_4:69908481-69908500 | None:intergenic | 40.0% |
| TGGAGCAATTTCTCCAAAAG+GGG | - | chr6_4:69908614-69908633 | Msa0994720:three_prime_UTR | 40.0% | |
| ! | CCATTCTAAACAACCCCTTT+TGG | + | chr6_4:69908630-69908649 | None:intergenic | 40.0% |
| CCAAAAGGGGTTGTTTAGAA+TGG | - | chr6_4:69908627-69908646 | Msa0994720:three_prime_UTR | 40.0% | |
| CTCAACACTTCCAAACACTT+TGG | - | chr6_4:69908670-69908689 | Msa0994720:three_prime_UTR | 40.0% | |
| ! | TGTTTGAGTTTAGAGGAGCA+AGG | - | chr6_4:69908801-69908820 | Msa0994720:intron | 40.0% |
| TCTGATGTCATGTCATTGGA+TGG | - | chr6_4:69908884-69908903 | Msa0994720:intron | 40.0% | |
| ATTGGATGGTAGAACACCAT+TGG | - | chr6_4:69908898-69908917 | Msa0994720:CDS | 40.0% | |
| GGTGGAAGAAACTCAAACTT+TGG | - | chr6_4:69909145-69909164 | Msa0994720:intron | 40.0% | |
| GGTGAAAACATTCCTGGATT+AGG | + | chr6_4:69909292-69909311 | None:intergenic | 40.0% | |
| TTGAATGTGTCTCCTGGAAA+AGG | - | chr6_4:69909493-69909512 | Msa0994720:intron | 40.0% | |
| ! | TTGGTAATAGAGGGATGGAA+AGG | - | chr6_4:69909921-69909940 | Msa0994720:intron | 40.0% |
| TGGTAATAGAGGGATGGAAA+GGG | - | chr6_4:69909922-69909941 | Msa0994720:intron | 40.0% | |
| ! | CTAGCTTAATTGGTCTCACT+TGG | - | chr6_4:69910077-69910096 | Msa0994720:CDS | 40.0% |
| AACGACCAAAATCGTGTACT+CGG | + | chr6_4:69910223-69910242 | None:intergenic | 40.0% | |
| CATGTAGTAAGCGCATTAGT+TGG | + | chr6_4:69910437-69910456 | None:intergenic | 40.0% | |
| ATTTCCATACTGTCAGATGC+AGG | - | chr6_4:69910585-69910604 | Msa0994720:intron | 40.0% | |
| TTGACAAAGCAAGCAAGCAA+AGG | - | chr6_4:69910849-69910868 | Msa0994720:intron | 40.0% | |
| ATCTCATCACATCACAAGCT+TGG | + | chr6_4:69911508-69911527 | None:intergenic | 40.0% | |
| ATGTGATGAGATGTGGTTAG+TGG | - | chr6_4:69911516-69911535 | Msa0994720:intron | 40.0% | |
| TCAAAACAAGCATGCCAAAG+AGG | + | chr6_4:69911633-69911652 | None:intergenic | 40.0% | |
| !!! | TTTGGCATGCTTGTTTTGAC+AGG | - | chr6_4:69911634-69911653 | Msa0994720:intron | 40.0% |
| ACCCATAGAAAAAGCTGCAA+TGG | + | chr6_4:69911704-69911723 | None:intergenic | 40.0% | |
| !! | TCATTTGCTGTTGGACTCAA+AGG | - | chr6_4:69911763-69911782 | Msa0994720:CDS | 40.0% |
| AAGAAACAGGACCTGAACAA+CGG | + | chr6_4:69911806-69911825 | None:intergenic | 40.0% | |
| TGTCCCATTTGTCTTTGCTA+AGG | - | chr6_4:69912860-69912879 | Msa0994720:CDS | 40.0% | |
| CATCCTGATATTCTAAGCAC+AGG | - | chr6_4:69912894-69912913 | Msa0994720:CDS | 40.0% | |
| GCATATTCCATGCAATGACT+TGG | - | chr6_4:69913145-69913164 | Msa0994720:CDS | 40.0% | |
| !! | ATTCCATGCAATGACTTGGT+TGG | - | chr6_4:69913149-69913168 | Msa0994720:CDS | 40.0% |
| ! | TCCTTTCTCTCTTTTGTGTG+TGG | + | chr6_4:69913194-69913213 | None:intergenic | 40.0% |
| CATCACGAGAATTGAATAGG+AGG | - | chr6_4:69913240-69913259 | Msa0994720:CDS | 40.0% | |
| TTGTTAAATGCGCCTCATCA+AGG | - | chr6_4:69913389-69913408 | Msa0994720:CDS | 40.0% | |
| CTACCATGTCATGACAGCAA+TGG | - | chr6_4:69908370-69908389 | Msa0994720:three_prime_UTR | 45.0% | |
| TCAAGAAACCCTACACCTAG+AGG | - | chr6_4:69909082-69909101 | Msa0994720:intron | 45.0% | |
| AACTAGAGCCTCTAGGTGTA+GGG | + | chr6_4:69909093-69909112 | None:intergenic | 45.0% | |
| AAACTAGAGCCTCTAGGTGT+AGG | + | chr6_4:69909094-69909113 | None:intergenic | 45.0% | |
| AACTATCCTGCACCTAATCC+AGG | - | chr6_4:69909277-69909296 | Msa0994720:intron | 45.0% | |
| ! | AACATTCCTGGATTAGGTGC+AGG | + | chr6_4:69909286-69909305 | None:intergenic | 45.0% |
| TCACCTGTCTCTGATGTGTT+TGG | - | chr6_4:69909430-69909449 | Msa0994720:intron | 45.0% | |
| ! | GTGTTTGGTGGACATGACTT+TGG | - | chr6_4:69909445-69909464 | Msa0994720:intron | 45.0% |
| ATGTGTCTCCTGGAAAAGGT+TGG | - | chr6_4:69909497-69909516 | Msa0994720:intron | 45.0% | |
| ! | CAGCTTTGGTAATAGAGGGA+TGG | - | chr6_4:69909916-69909935 | Msa0994720:intron | 45.0% |
| CAACATGAAGGTGGTGAGAA+AGG | - | chr6_4:69909953-69909972 | Msa0994720:intron | 45.0% | |
| ! | AATTGGTCTCACTTGGTCCT+TGG | - | chr6_4:69910084-69910103 | Msa0994720:CDS | 45.0% |
| CTTGGTCCTTGGTTTCATTC+AGG | - | chr6_4:69910095-69910114 | Msa0994720:CDS | 45.0% | |
| CTCGGTGGAATTACTACTTC+AGG | + | chr6_4:69910205-69910224 | None:intergenic | 45.0% | |
| ! | TTCCACCGAGTACACGATTT+TGG | - | chr6_4:69910215-69910234 | Msa0994720:intron | 45.0% |
| AAGTCCTGCATCTGACAGTA+TGG | + | chr6_4:69910592-69910611 | None:intergenic | 45.0% | |
| ATACTGTCAGATGCAGGACT+TGG | - | chr6_4:69910591-69910610 | Msa0994720:intron | 45.0% | |
| ACAAAGCAAGCAAGCAAAGG+TGG | - | chr6_4:69910852-69910871 | Msa0994720:intron | 45.0% | |
| GCTTGTGATGTGATGAGATG+TGG | - | chr6_4:69911509-69911528 | Msa0994720:intron | 45.0% | |
| TGATGAGATGTGGTTAGTGG+TGG | - | chr6_4:69911519-69911538 | Msa0994720:intron | 45.0% | |
| AAACAAGCATGCCAAAGAGG+AGG | + | chr6_4:69911630-69911649 | None:intergenic | 45.0% | |
| ATGGGTGTGAGATTCCTTGT+TGG | - | chr6_4:69911718-69911737 | Msa0994720:CDS | 45.0% | |
| CTTTCATGTTGCCGTTGTTC+AGG | - | chr6_4:69911792-69911811 | Msa0994720:CDS | 45.0% | |
| !!! | AAGAGCTGCCTGTTGGTTTT+TGG | + | chr6_4:69912829-69912848 | None:intergenic | 45.0% |
| CACCCTGTGCTTAGAATATC+AGG | + | chr6_4:69912900-69912919 | None:intergenic | 45.0% | |
| CAACCAACCAAGTCATTGCA+TGG | + | chr6_4:69913155-69913174 | None:intergenic | 45.0% | |
| !! | TGCAATGACTTGGTTGGTTG+AGG | - | chr6_4:69913155-69913174 | Msa0994720:CDS | 45.0% |
| GCCACACACAAAAGAGAGAA+AGG | - | chr6_4:69913190-69913209 | Msa0994720:CDS | 45.0% | |
| !!! | TTATAAGTTTTAAAAAAATA+TGG | + | chr6_4:69910393-69910412 | None:intergenic | 5.0% |
| !! | TTTGTATAATAATTAATTAT+TGG | - | chr6_4:69912368-69912387 | Msa0994720:CDS | 5.0% |
| !! | TTGTATAATAATTAATTATT+GGG | - | chr6_4:69912369-69912388 | Msa0994720:CDS | 5.0% |
| GCACCATTGCTGTCATGACA+TGG | + | chr6_4:69908376-69908395 | None:intergenic | 50.0% | |
| GAACAGTTTCCTGACACTGC+TGG | - | chr6_4:69908836-69908855 | Msa0994720:intron | 50.0% | |
| ACAATGGAACCAGCAGTGTC+AGG | + | chr6_4:69908848-69908867 | None:intergenic | 50.0% | |
| CCACCAAACACATCAGAGAC+AGG | + | chr6_4:69909436-69909455 | None:intergenic | 50.0% | |
| CCTGTCTCTGATGTGTTTGG+TGG | - | chr6_4:69909433-69909452 | Msa0994720:intron | 50.0% | |
| CATGAAGGTGGTGAGAAAGG+TGG | - | chr6_4:69909956-69909975 | Msa0994720:intron | 50.0% | |
| ! | CTAGTCATCACACTTGCTGG+TGG | + | chr6_4:69910004-69910023 | None:intergenic | 50.0% |
| CACCAGCAAGTGTGATGACT+AGG | - | chr6_4:69910002-69910021 | Msa0994720:CDS | 50.0% | |
| AGCCTAGTCATCACACTTGC+TGG | + | chr6_4:69910007-69910026 | None:intergenic | 50.0% | |
| GACCAAAATCGTGTACTCGG+TGG | + | chr6_4:69910220-69910239 | None:intergenic | 50.0% | |
| CGTGCAATCGTTGACGACAT+AGG | - | chr6_4:69910461-69910480 | Msa0994720:intron | 50.0% | |
| GGCATGGCTATGTTCAGTCT+TGG | - | chr6_4:69910612-69910631 | Msa0994720:intron | 50.0% | |
| !! | GCAGCTGCTTCATTTGCTGT+TGG | - | chr6_4:69911754-69911773 | Msa0994720:CDS | 50.0% |
| GGTGGTGAGAAAGGTGGAGA+TGG | - | chr6_4:69909962-69909981 | Msa0994720:intron | 55.0% | |
| GTCAGATGCAGGACTTGGCA+TGG | - | chr6_4:69910596-69910615 | Msa0994720:intron | 55.0% | |
| GCAAGCAAGCAAAGGTGGAG+TGG | - | chr6_4:69910857-69910876 | Msa0994720:intron | 55.0% | |
| GGCATGCTTTGCCTCCTCTT+TGG | - | chr6_4:69911616-69911635 | Msa0994720:intron | 55.0% | |
| CCATGACAGCTGGACCAACA+AGG | + | chr6_4:69911735-69911754 | None:intergenic | 55.0% | |
| CCTTGTTGGTCCAGCTGTCA+TGG | - | chr6_4:69911732-69911751 | Msa0994720:CDS | 55.0% | |
| GAAGCAGCTGCCATGACAGC+TGG | + | chr6_4:69911745-69911764 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 69908350 | 69913462 | 69908350 | ID=Msa0994720;Name=Msa0994720 |
| chr6_4 | mRNA | 69908350 | 69913462 | 69908350 | ID=Msa0994720-mRNA-1;Parent=Msa0994720;Name=Msa0994720-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.8|0.83|1|0.8|0.83|6|372|584 |
| chr6_4 | exon | 69908350 | 69908788 | 69908350 | ID=Msa0994720-mRNA-1:exon:12972;Parent=Msa0994720-mRNA-1 |
| chr6_4 | exon | 69908896 | 69908972 | 69908896 | ID=Msa0994720-mRNA-1:exon:12971;Parent=Msa0994720-mRNA-1 |
| chr6_4 | exon | 69909999 | 69910156 | 69909999 | ID=Msa0994720-mRNA-1:exon:12970;Parent=Msa0994720-mRNA-1 |
| chr6_4 | exon | 69911179 | 69911264 | 69911179 | ID=Msa0994720-mRNA-1:exon:12969;Parent=Msa0994720-mRNA-1 |
| chr6_4 | exon | 69911696 | 69911945 | 69911696 | ID=Msa0994720-mRNA-1:exon:12968;Parent=Msa0994720-mRNA-1 |
| chr6_4 | exon | 69912346 | 69913462 | 69912346 | ID=Msa0994720-mRNA-1:exon:12967;Parent=Msa0994720-mRNA-1 |
| chr6_4 | CDS | 69912346 | 69913462 | 69912346 | ID=Msa0994720-mRNA-1:cds;Parent=Msa0994720-mRNA-1 |
| chr6_4 | CDS | 69911696 | 69911945 | 69911696 | ID=Msa0994720-mRNA-1:cds;Parent=Msa0994720-mRNA-1 |
| chr6_4 | CDS | 69911179 | 69911264 | 69911179 | ID=Msa0994720-mRNA-1:cds;Parent=Msa0994720-mRNA-1 |
| chr6_4 | CDS | 69909999 | 69910156 | 69909999 | ID=Msa0994720-mRNA-1:cds;Parent=Msa0994720-mRNA-1 |
| chr6_4 | CDS | 69908896 | 69908972 | 69908896 | ID=Msa0994720-mRNA-1:cds;Parent=Msa0994720-mRNA-1 |
| chr6_4 | CDS | 69908722 | 69908788 | 69908722 | ID=Msa0994720-mRNA-1:cds;Parent=Msa0994720-mRNA-1 |
| chr6_4 | three_prime_UTR | 69908350 | 69908721 | 69908350 | ID=Msa0994720-mRNA-1:three_prime_utr;Parent=Msa0994720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
