AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0811690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811690 MtrunA17_Chr5g0428141 96.830 347 11 0 1 347 1 347 0.0 686
Msa0811690 MtrunA17_Chr8g0366881 63.043 322 102 10 32 347 38 348 1.29e-131 379
Msa0811690 MtrunA17_Chr5g0411501 62.883 326 99 10 33 347 21 335 4.50e-127 367
Msa0811690 MtrunA17_Chr2g0331411 49.857 349 121 12 29 347 2 326 1.50e-91 276
Msa0811690 MtrunA17_Chr6g0486121 53.220 295 87 9 57 347 7 254 1.21e-87 264
Msa0811690 MtrunA17_Chr8g0390281 47.273 330 104 9 50 347 2 293 2.78e-83 254
Msa0811690 MtrunA17_Chr1g0190711 65.854 164 51 3 188 346 89 252 2.06e-69 217
Msa0811690 MtrunA17_Chr7g0260641 65.823 158 52 2 191 347 94 250 3.37e-68 214
Msa0811690 MtrunA17_Chr1g0184791 64.596 161 52 4 191 346 84 244 1.21e-66 210
Msa0811690 MtrunA17_Chr1g0187921 62.264 159 58 2 191 347 78 236 1.52e-65 207
Msa0811690 MtrunA17_Chr1g0184801 56.790 162 45 5 178 336 63 202 4.65e-50 166
Msa0811690 MtrunA17_Chr7g0260621 39.711 277 87 6 60 336 6 202 6.85e-48 160
Msa0811690 MtrunA17_Chr1g0166011 51.515 165 56 4 172 336 43 183 1.49e-47 159
Msa0811690 MtrunA17_Chr1g0187961 52.229 157 48 5 180 335 48 178 8.12e-47 157
Msa0811690 MtrunA17_Chr1g0183251 43.478 184 69 5 195 343 81 264 3.58e-36 132
Msa0811690 MtrunA17_Chr4g0004181 49.324 148 46 4 194 339 52 172 1.91e-35 127
Msa0811690 MtrunA17_Chr2g0332141 50.833 120 49 4 232 347 8 121 2.40e-33 120
Msa0811690 MtrunA17_Chr2g0330951 40.217 184 78 6 182 338 85 263 9.98e-32 120
Msa0811690 MtrunA17_Chr8g0340731 41.279 172 83 4 178 331 89 260 2.11e-31 119
Msa0811690 MtrunA17_Chr4g0069561 34.437 151 69 6 186 330 56 182 4.21e-19 84.0
Msa0811690 MtrunA17_Chr1g0193861 40.741 108 48 3 230 335 83 176 1.99e-17 79.0
Msa0811690 MtrunA17_Chr3g0137601 31.469 143 72 5 196 332 88 210 2.32e-16 77.0
Msa0811690 MtrunA17_Chr7g0270851 38.384 99 50 2 230 328 68 155 1.13e-15 73.9
Msa0811690 MtrunA17_Chr1g0209181 31.690 142 80 3 187 328 44 168 2.19e-15 73.6
Msa0811690 MtrunA17_Chr4g0064131 31.343 134 71 4 197 329 93 206 1.59e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811690 AT5G65670.2 56.875 320 117 9 32 346 32 335 1.87e-108 320
Msa0811690 AT2G22670.3 55.655 336 110 12 20 346 13 318 6.04e-108 318
Msa0811690 AT2G22670.1 55.655 336 110 12 20 346 13 318 6.04e-108 318
Msa0811690 AT2G22670.4 55.655 336 110 12 20 346 30 335 6.77e-108 319
Msa0811690 AT5G65670.1 56.522 322 117 10 32 346 32 337 7.19e-107 316
Msa0811690 AT2G22670.5 55.060 336 110 13 20 346 13 316 9.09e-105 310
Msa0811690 AT2G22670.2 55.060 336 110 13 20 346 13 316 9.09e-105 310
Msa0811690 AT4G29080.1 47.734 331 124 8 33 347 8 305 1.87e-86 263
Msa0811690 AT4G14550.1 45.070 284 99 8 65 347 1 228 9.92e-66 207
Msa0811690 AT1G04250.1 42.160 287 96 6 65 346 7 228 1.68e-64 204
Msa0811690 AT3G04730.1 43.098 297 91 8 65 346 2 235 7.80e-63 200
Msa0811690 AT3G23050.1 43.902 287 97 9 65 342 6 237 5.71e-61 196
Msa0811690 AT4G14550.2 43.956 273 96 8 65 336 1 217 1.17e-59 192
Msa0811690 AT1G04240.1 53.548 155 54 4 182 336 50 186 4.00e-49 163
Msa0811690 AT1G04240.2 53.548 155 54 4 182 336 150 286 3.80e-48 164
Msa0811690 AT4G14550.3 42.231 251 88 8 65 314 1 195 3.83e-47 158
Msa0811690 AT5G43700.1 51.299 154 55 3 183 336 49 182 9.70e-46 154
Msa0811690 AT3G23050.2 41.154 260 89 9 65 315 6 210 7.13e-44 150
Msa0811690 AT3G23030.1 48.980 147 46 2 189 335 53 170 5.23e-41 142
Msa0811690 AT3G15540.1 49.359 156 54 5 190 342 64 197 2.45e-40 141
Msa0811690 AT3G23030.2 48.980 147 46 2 189 335 140 257 3.07e-40 142
Msa0811690 AT1G52830.1 45.333 150 57 4 187 336 61 185 1.85e-38 135
Msa0811690 AT2G33310.2 44.624 186 67 6 182 341 62 237 1.98e-38 137
Msa0811690 AT2G33310.3 44.624 186 66 7 182 341 62 236 8.67e-37 133
Msa0811690 AT2G33310.1 44.624 186 66 7 182 341 62 236 8.67e-37 133
Msa0811690 AT4G28640.1 46.914 162 66 4 192 336 84 242 1.48e-36 132
Msa0811690 AT4G28640.3 46.875 160 65 4 192 334 84 240 2.69e-36 132
Msa0811690 AT1G04550.2 42.564 195 82 5 175 347 50 236 4.76e-36 131
Msa0811690 AT1G15580.1 39.665 179 72 4 158 330 11 159 1.49e-35 127
Msa0811690 AT4G28640.2 46.875 160 65 4 192 334 84 240 1.95e-35 131
Msa0811690 AT4G14560.1 49.655 145 46 3 188 332 47 164 1.71e-34 125
Msa0811690 AT1G04100.1 39.655 174 72 5 193 336 90 260 4.76e-31 118
Msa0811690 AT3G16500.1 39.205 176 77 5 185 331 78 252 1.57e-30 117
Msa0811690 AT3G16500.2 39.205 176 77 5 185 331 78 252 1.60e-30 117
Msa0811690 AT1G51950.1 37.647 170 85 4 182 331 82 250 1.76e-29 114
Msa0811690 AT5G25890.1 36.686 169 87 3 170 338 22 170 2.51e-27 106
Msa0811690 AT4G14550.4 37.198 207 74 6 65 271 1 151 1.44e-26 104
Msa0811690 AT3G17600.1 39.375 160 68 8 175 328 18 154 5.72e-24 96.7
Msa0811690 AT3G23050.3 36.744 215 73 8 65 271 6 165 4.45e-23 94.7
Msa0811690 AT2G46990.1 40.385 104 50 1 227 330 81 172 1.87e-19 85.1
Msa0811690 AT3G62100.1 39.604 101 49 1 229 329 81 169 3.04e-19 84.3
Msa0811690 AT3G62100.2 39.080 87 41 1 229 315 81 155 4.96e-14 69.3
Msa0811690 AT1G15050.2 37.255 102 51 1 232 333 62 150 7.26e-14 68.9
Msa0811690 AT2G46990.2 39.080 87 41 1 229 315 83 157 8.48e-14 68.9
Msa0811690 AT1G15050.1 37.255 102 51 1 232 333 94 182 1.62e-13 68.6
Msa0811690 AT2G01200.2 34.906 106 56 1 228 333 96 188 8.59e-13 66.6
Msa0811690 AT2G01200.1 34.906 106 56 1 228 333 96 188 8.59e-13 66.6
Msa0811690 AT4G32280.2 32.653 98 49 2 231 328 118 198 2.59e-12 65.9
Msa0811690 AT4G32280.1 24.848 165 76 4 195 328 93 240 3.72e-12 65.9

Find 74 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCACACTAAAATGTCTT+AGG 0.148340 5_3:-40987939 None:intergenic
TGAAGAGGTTGATGGAAAAT+TGG 0.178401 5_3:+40986104 Msa0811690:CDS
GTGAGAGAGTTTAGAGGTTT+TGG 0.192375 5_3:-40984285 None:intergenic
AGCAACATTCTCAAGCATTT+TGG 0.204500 5_3:-40985495 None:intergenic
AAATCTGATGAATCTCTTTC+AGG 0.213261 5_3:-40985098 None:intergenic
TTTGATCTTGCTCATTCTTC+AGG 0.260580 5_3:+40984336 Msa0811690:five_prime_UTR
CCCATGTAGTTGAACTCTTT+TGG 0.273911 5_3:-40984945 None:intergenic
TTTAAGATTCAAATTACTTT+TGG 0.274939 5_3:-40985036 None:intergenic
GAAAGCAAACCAAGTCTTAA+TGG 0.296319 5_3:+40985587 Msa0811690:CDS
AGAGAAGTGAGAGAGTTTAG+AGG 0.313974 5_3:-40984291 None:intergenic
TGCTTGTGGGTGATGTTCCC+TGG 0.320651 5_3:+40986478 Msa0811690:CDS
AGCTCTGATGCCATTGGTTT+AGG 0.336962 5_3:+40987545 Msa0811690:CDS
TCTATCTATCTAACTGTCTA+TGG 0.343074 5_3:+40987863 Msa0811690:three_prime_UTR
TAAAGCTACTGAACTTAGAT+TGG 0.345821 5_3:+40985055 Msa0811690:CDS
GAACTTAGATTGGGACTTCC+AGG 0.346391 5_3:+40985065 Msa0811690:CDS
TGTCACAAAGTAACATAAAC+TGG 0.364553 5_3:-40984209 None:intergenic
CTTAATGGTTCTGCAACTAA+TGG 0.371208 5_3:+40985602 Msa0811690:CDS
ATCCAGTGATGAACAATTAG+AGG 0.386837 5_3:-40984976 None:intergenic
CTTTCAGGAGAAAGTGATCC+TGG 0.402526 5_3:-40985083 None:intergenic
TTTCACACTAAAATGTCTTA+GGG 0.405511 5_3:-40987938 None:intergenic
TTATGTTACTTTGTGACAAA+TGG 0.407225 5_3:+40984214 Msa0811690:five_prime_UTR
GAAGAGGTTGATGGAAAATT+GGG 0.409009 5_3:+40986105 Msa0811690:CDS
TATTGCATTATATATGTTTG+TGG 0.411150 5_3:+40988009 Msa0811690:three_prime_UTR
TGTGGCAGGGCACAGGTTGT+TGG 0.411315 5_3:+40986024 Msa0811690:intron
AGAATATGTTATTACTTATG+AGG 0.411394 5_3:+40986437 Msa0811690:CDS
GGTTGAGAGTACAAAGAGAA+AGG 0.412402 5_3:-40984264 None:intergenic
TTCATTGTTCTTTGAAGCAG+TGG 0.422775 5_3:-40986085 None:intergenic
AAGCTGAGGGATCTGCTTCA+TGG 0.432732 5_3:+40986411 Msa0811690:CDS
GGCCTCCAATAAGATCGTTT+AGG 0.457342 5_3:+40986049 Msa0811690:CDS
GAACTAAGCAGTATCAATAA+TGG 0.458186 5_3:+40987830 Msa0811690:exon
AAGAACAATGAAGAGGTTGA+TGG 0.459868 5_3:+40986096 Msa0811690:CDS
ATTGGTCTTGAGAGGCCTAA+TGG 0.460399 5_3:+40985557 Msa0811690:CDS
TTGCTTTCACCAACACCATT+AGG 0.462889 5_3:-40985572 None:intergenic
CTTAACTGTTGCTATTTCAT+CGG 0.466939 5_3:-40985534 None:intergenic
TCATCACCTATTCCTAGCCT+TGG 0.471158 5_3:-40984864 None:intergenic
GCAGGGCACAGGTTGTTGGT+TGG 0.475629 5_3:+40986028 Msa0811690:intron
GAAATAGCAACAGTTAAGAT+TGG 0.476375 5_3:+40985539 Msa0811690:CDS
ATCCTCTAATTGTTCATCAC+TGG 0.478899 5_3:+40984974 Msa0811690:CDS
TCTCTACCAAGGCTAGGAAT+AGG 0.484039 5_3:+40984858 Msa0811690:CDS
TTCCTAAACGATCTTATTGG+AGG 0.485580 5_3:-40986051 None:intergenic
GTTGATGGAAAATTGGGATC+AGG 0.490761 5_3:+40986111 Msa0811690:CDS
AAAGCTACTGAACTTAGATT+GGG 0.491159 5_3:+40985056 Msa0811690:CDS
ATTACTTATGAGGATAAAGA+TGG 0.497598 5_3:+40986447 Msa0811690:CDS
ACCAAAAGAGTTCAACTACA+TGG 0.503124 5_3:+40984944 Msa0811690:CDS
GCTTGTGGGTGATGTTCCCT+GGG 0.507108 5_3:+40986479 Msa0811690:CDS
TCTTATATGTCTTGTTGTGA+AGG 0.508011 5_3:+40987964 Msa0811690:three_prime_UTR
ATGAGGATAAAGATGGTGAT+TGG 0.518002 5_3:+40986454 Msa0811690:CDS
ATGAAGAGCTCTGATGCCAT+TGG 0.522246 5_3:+40987539 Msa0811690:CDS
ATGTTCAGCTGTTTCACCAT+AGG 0.526626 5_3:+40986240 Msa0811690:CDS
AATCTTGTGTGGCAGGGCAC+AGG 0.532182 5_3:+40986017 Msa0811690:intron
CACCCTACTTACTTGCTAGC+AGG 0.532961 5_3:-40985638 None:intergenic
GATGGTGATTGGATGCTTGT+GGG 0.535428 5_3:+40986465 Msa0811690:CDS
TGTTACTTTGTGACAAATGG+AGG 0.536007 5_3:+40984217 Msa0811690:five_prime_UTR
TTTGTGAAGGTCAGCATGGA+TGG 0.538161 5_3:+40986144 Msa0811690:CDS
GGATGTTTATTGATACATGC+AGG 0.544403 5_3:+40987504 Msa0811690:intron
TCAGGTCAATGTGAATCTCA+TGG 0.548741 5_3:+40986366 Msa0811690:intron
CAGTTAAGATTGGTCTTGAG+AGG 0.564900 5_3:+40985549 Msa0811690:CDS
GTTGCAGAACCATTAAGACT+TGG 0.566322 5_3:-40985596 None:intergenic
ATGAAGCAGATCCCTCAGCT+TGG 0.567500 5_3:-40986409 None:intergenic
AGATGGTGATTGGATGCTTG+TGG 0.576179 5_3:+40986464 Msa0811690:CDS
CTTGAGAGGCCTAATGGTGT+TGG 0.583757 5_3:+40985563 Msa0811690:CDS
GTGATGTCTCTACCAAGGCT+AGG 0.589347 5_3:+40984852 Msa0811690:exon
GGAATACTAACCTAAACCAA+TGG 0.612277 5_3:-40987555 None:intergenic
CCAAAAGAGTTCAACTACAT+GGG 0.615578 5_3:+40984945 Msa0811690:CDS
AAATGCTTGAGAATGTTGCT+TGG 0.617788 5_3:+40985498 Msa0811690:CDS
TGCTTCAAAGAACAATGAAG+AGG 0.621204 5_3:+40986089 Msa0811690:CDS
AGTATATAAACTTACTCCCA+GGG 0.621275 5_3:-40986495 None:intergenic
TGCTGAATGAAACCAAGCTG+AGG 0.622855 5_3:+40986397 Msa0811690:CDS
GCTGAATGAAACCAAGCTGA+GGG 0.626284 5_3:+40986398 Msa0811690:CDS
GATGGAAAATTGGGATCAGG+AGG 0.633939 5_3:+40986114 Msa0811690:CDS
AGGAGGTGCTGTGTTTGTGA+AGG 0.651647 5_3:+40986131 Msa0811690:CDS
TCATTGTGATGTCTCTACCA+AGG 0.666331 5_3:+40984847 Msa0811690:exon
TGTGTTTGTGAAGGTCAGCA+TGG 0.667221 5_3:+40986140 Msa0811690:CDS
TGTTTATTGATACATGCAGG+AGG 0.676885 5_3:+40987507 Msa0811690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTACTTTTTTATAAAATAA+TGG + chr5_3:40985408-40985427 Msa0811690:intron 10.0%
!!! TTTTTATCAAAAATAGAAAT+TGG - chr5_3:40987706-40987725 None:intergenic 10.0%
!!! TCTTTAAAAGATTGAATTTT+TGG - chr5_3:40985011-40985030 None:intergenic 15.0%
!!! TTTAAGATTCAAATTACTTT+TGG - chr5_3:40985039-40985058 None:intergenic 15.0%
!! AAATTGTTAATTCAATCAAT+AGG + chr5_3:40985265-40985284 Msa0811690:intron 15.0%
!! AATTGTTAATTCAATCAATA+GGG + chr5_3:40985266-40985285 Msa0811690:intron 15.0%
!!! AAAAACTGTTTAACTTAATA+TGG + chr5_3:40988053-40988072 Msa0811690:three_prime_UTR 15.0%
!! AAGTATCAATTTCTATGAAA+TGG + chr5_3:40984471-40984490 Msa0811690:intron 20.0%
!! AGTATCAATTTCTATGAAAT+GGG + chr5_3:40984472-40984491 Msa0811690:intron 20.0%
!! TTTACATCTTTATGCTAAAA+TGG + chr5_3:40984516-40984535 Msa0811690:intron 20.0%
!!! TTTTTCAATGTTTTTGGTTA+AGG + chr5_3:40984747-40984766 Msa0811690:intron 20.0%
!!! AAATGTTGTTCTTTTTTGAT+AGG + chr5_3:40984779-40984798 Msa0811690:intron 20.0%
!!! AATGTTGTTCTTTTTTGATA+GGG + chr5_3:40984780-40984799 Msa0811690:intron 20.0%
!!! TAAAAACAATGTTACTTTGT+TGG + chr5_3:40984893-40984912 Msa0811690:CDS 20.0%
!! AAATCACAAAAATTGAAATG+CGG - chr5_3:40985831-40985850 None:intergenic 20.0%
!! AGAATATGTTATTACTTATG+AGG + chr5_3:40986437-40986456 Msa0811690:CDS 20.0%
!! TGTTTGTAAAAAACTTATCT+AGG - chr5_3:40986686-40986705 None:intergenic 20.0%
!! TTCTATTAATATACCTTACA+TGG - chr5_3:40986917-40986936 None:intergenic 20.0%
!! ATGTAAGGTATATTAATAGA+AGG + chr5_3:40986916-40986935 Msa0811690:intron 20.0%
!! AATAAAAGCTTGAATGATAA+TGG + chr5_3:40986983-40987002 Msa0811690:intron 20.0%
!! AATGTGACTTCAAATTAAAA+TGG + chr5_3:40987064-40987083 Msa0811690:intron 20.0%
!! ACTAAATGAATATGTTACAT+GGG + chr5_3:40987248-40987267 Msa0811690:intron 20.0%
!!! TTTGATACGATTTTATTGAA+AGG + chr5_3:40987351-40987370 Msa0811690:intron 20.0%
!!! TTGATACGATTTTATTGAAA+GGG + chr5_3:40987352-40987371 Msa0811690:intron 20.0%
!!! AAAGTAAATTAAGTTGAAGT+AGG - chr5_3:40987682-40987701 None:intergenic 20.0%
!! TATTGCATTATATATGTTTG+TGG + chr5_3:40988009-40988028 Msa0811690:three_prime_UTR 20.0%
!!! TTATGTTACTTTGTGACAAA+TGG + chr5_3:40984214-40984233 Msa0811690:five_prime_UTR 25.0%
!!! ATGGATTGGTCTAAAAAAAT+TGG - chr5_3:40984445-40984464 None:intergenic 25.0%
! GAAATTGATACTTGTGTTAA+TGG - chr5_3:40984464-40984483 None:intergenic 25.0%
!!! GTTGTGTTTTTCAATGTTTT+TGG + chr5_3:40984741-40984760 Msa0811690:intron 25.0%
!!! TACTGCAAGGTTTTAAATTT+AGG + chr5_3:40985682-40985701 Msa0811690:intron 25.0%
! CTTAACAATGAAAATGAACT+CGG + chr5_3:40985980-40985999 Msa0811690:intron 25.0%
!! TTTTTCCTAAACGATCTTAT+TGG - chr5_3:40986057-40986076 None:intergenic 25.0%
!!! AAGTCTACTTTTCTCAAATA+CGG - chr5_3:40986174-40986193 None:intergenic 25.0%
! ATTACTTATGAGGATAAAGA+TGG + chr5_3:40986447-40986466 Msa0811690:CDS 25.0%
! TGTAAAAAACTTATCTAGGT+TGG - chr5_3:40986682-40986701 None:intergenic 25.0%
!!! TTGTGGTTTTAGATTGAAAT+AGG + chr5_3:40986887-40986906 Msa0811690:intron 25.0%
!! TTTGAATTGGCTTAAATTGT+TGG - chr5_3:40987091-40987110 None:intergenic 25.0%
! CACTAAATGAATATGTTACA+TGG + chr5_3:40987247-40987266 Msa0811690:intron 25.0%
! CTAAATGAATATGTTACATG+GGG + chr5_3:40987249-40987268 Msa0811690:intron 25.0%
! AAATCAAAGTGAAGTAAACA+AGG - chr5_3:40987429-40987448 None:intergenic 25.0%
! GATTGATTGTGTTAAATGAA+TGG - chr5_3:40987579-40987598 None:intergenic 25.0%
!! CACATAATTTGTACTTGAAT+TGG - chr5_3:40987761-40987780 None:intergenic 25.0%
! TTTCACACTAAAATGTCTTA+GGG - chr5_3:40987941-40987960 None:intergenic 25.0%
TGTCACAAAGTAACATAAAC+TGG - chr5_3:40984212-40984231 None:intergenic 30.0%
AGAAATATGGAAGCAAAACA+TGG - chr5_3:40984385-40984404 None:intergenic 30.0%
TGACATGTTAGAGAGAAATA+TGG - chr5_3:40984398-40984417 None:intergenic 30.0%
!!! GGATAGTTTCATGAGTTTTT+TGG - chr5_3:40984421-40984440 None:intergenic 30.0%
!! GATTGGTCTAAAAAAATTGG+TGG - chr5_3:40984442-40984461 None:intergenic 30.0%
! TGATACTTGTGTTAATGGAT+TGG - chr5_3:40984459-40984478 None:intergenic 30.0%
ACATCTTTATGCTAAAATGG+TGG + chr5_3:40984519-40984538 Msa0811690:intron 30.0%
! GAAAAAAGTGTGTGTTTGAA+TGG + chr5_3:40984915-40984934 Msa0811690:CDS 30.0%
TAAAGCTACTGAACTTAGAT+TGG + chr5_3:40985055-40985074 Msa0811690:CDS 30.0%
AAAGCTACTGAACTTAGATT+GGG + chr5_3:40985056-40985075 Msa0811690:CDS 30.0%
AAATCTGATGAATCTCTTTC+AGG - chr5_3:40985101-40985120 None:intergenic 30.0%
! AAAGATGATCCTCTTTTTGA+GGG - chr5_3:40985175-40985194 None:intergenic 30.0%
! AAAAGATGATCCTCTTTTTG+AGG - chr5_3:40985176-40985195 None:intergenic 30.0%
!! CTGTTTTAGGTAACAAAAGA+GGG + chr5_3:40985210-40985229 Msa0811690:CDS 30.0%
! TACCTCTGAAAAAACATTCA+TGG - chr5_3:40985246-40985265 None:intergenic 30.0%
ATTCAATCAATAGGGTATGA+TGG + chr5_3:40985274-40985293 Msa0811690:intron 30.0%
!! CTTAACTGTTGCTATTTCAT+CGG - chr5_3:40985537-40985556 None:intergenic 30.0%
GAAATAGCAACAGTTAAGAT+TGG + chr5_3:40985539-40985558 Msa0811690:CDS 30.0%
!!! CTTTTTTTAGAAGCTTGGTT+TGG + chr5_3:40985957-40985976 Msa0811690:intron 30.0%
AATAGTCTTTCAACGATTTG+AGG + chr5_3:40986298-40986317 Msa0811690:intron 30.0%
AGTATATAAACTTACTCCCA+GGG - chr5_3:40986498-40986517 None:intergenic 30.0%
AAGTATATAAACTTACTCCC+AGG - chr5_3:40986499-40986518 None:intergenic 30.0%
TGGGAGTAAGTTTATATACT+TGG + chr5_3:40986498-40986517 Msa0811690:intron 30.0%
!!! TGGTTTTAGATTGAAATAGG+TGG + chr5_3:40986890-40986909 Msa0811690:intron 30.0%
GTCTTCAATAATGCCAAAAA+TGG - chr5_3:40986952-40986971 None:intergenic 30.0%
ACCATTATTTCGTCTAACTA+CGG - chr5_3:40987136-40987155 None:intergenic 30.0%
ATGTTTGGAAATTGGAATCA+TGG - chr5_3:40987218-40987237 None:intergenic 30.0%
TGAAACGCAAAATTGAAAAC+AGG - chr5_3:40987292-40987311 None:intergenic 30.0%
AAATCGTATCAAATTCGCTA+TGG - chr5_3:40987344-40987363 None:intergenic 30.0%
ATGAGGAAAATTCTTAGAGA+GGG + chr5_3:40987375-40987394 Msa0811690:intron 30.0%
AGTTGAGATATATTAGGTGT+TGG - chr5_3:40987477-40987496 None:intergenic 30.0%
GCAAAGAGTTGAGATATATT+AGG - chr5_3:40987483-40987502 None:intergenic 30.0%
AATATATCTCAACTCTTTGC+AGG + chr5_3:40987483-40987502 Msa0811690:intron 30.0%
CAAGTACAAATTATGTGTTG+TGG + chr5_3:40987764-40987783 Msa0811690:intron 30.0%
!!! TTACTTTTTTCAACTGCTCT+GGG - chr5_3:40987804-40987823 None:intergenic 30.0%
!!! TTTACTTTTTTCAACTGCTC+TGG - chr5_3:40987805-40987824 None:intergenic 30.0%
CAGTTGAAAAAAGTAAAAGC+AGG + chr5_3:40987808-40987827 Msa0811690:CDS 30.0%
GAACTAAGCAGTATCAATAA+TGG + chr5_3:40987830-40987849 Msa0811690:exon 30.0%
TCTATCTATCTAACTGTCTA+TGG + chr5_3:40987863-40987882 Msa0811690:three_prime_UTR 30.0%
CTTTCACACTAAAATGTCTT+AGG - chr5_3:40987942-40987961 None:intergenic 30.0%
! TCTTATATGTCTTGTTGTGA+AGG + chr5_3:40987964-40987983 Msa0811690:three_prime_UTR 30.0%
!! TGTTACTTTGTGACAAATGG+AGG + chr5_3:40984217-40984236 Msa0811690:five_prime_UTR 35.0%
TTTGATCTTGCTCATTCTTC+AGG + chr5_3:40984336-40984355 Msa0811690:five_prime_UTR 35.0%
ATATGGAAGCAAAACATGGA+AGG - chr5_3:40984381-40984400 None:intergenic 35.0%
CTTTATGCTAAAATGGTGGT+TGG + chr5_3:40984523-40984542 Msa0811690:intron 35.0%
!! GTTGTGTTTTTCAACGTTCT+TGG + chr5_3:40984626-40984645 Msa0811690:intron 35.0%
ACCAAAAGAGTTCAACTACA+TGG + chr5_3:40984944-40984963 Msa0811690:CDS 35.0%
CCAAAAGAGTTCAACTACAT+GGG + chr5_3:40984945-40984964 Msa0811690:CDS 35.0%
ATCCTCTAATTGTTCATCAC+TGG + chr5_3:40984974-40984993 Msa0811690:CDS 35.0%
ATCCAGTGATGAACAATTAG+AGG - chr5_3:40984979-40984998 None:intergenic 35.0%
! CTTTTGTTACCTAAAACAGC+AGG - chr5_3:40985209-40985228 None:intergenic 35.0%
!! GCTGTTTTAGGTAACAAAAG+AGG + chr5_3:40985209-40985228 Msa0811690:CDS 35.0%
!!! TGCCATGAATGTTTTTTCAG+AGG + chr5_3:40985241-40985260 Msa0811690:CDS 35.0%
!!! GGTATGATGGTTTTAAACTG+CGG + chr5_3:40985287-40985306 Msa0811690:intron 35.0%
! TACAGCTCACTATTAAGTTG+CGG + chr5_3:40985357-40985376 Msa0811690:intron 35.0%
! AGCAACATTCTCAAGCATTT+TGG - chr5_3:40985498-40985517 None:intergenic 35.0%
AAATGCTTGAGAATGTTGCT+TGG + chr5_3:40985498-40985517 Msa0811690:CDS 35.0%
GAAAGCAAACCAAGTCTTAA+TGG + chr5_3:40985587-40985606 Msa0811690:CDS 35.0%
! CTTAATGGTTCTGCAACTAA+TGG + chr5_3:40985602-40985621 Msa0811690:CDS 35.0%
TTTGTAAGTAACTGCGATTC+AGG - chr5_3:40985754-40985773 None:intergenic 35.0%
ATCGCAGTTACTTACAAATG+CGG + chr5_3:40985756-40985775 Msa0811690:intron 35.0%
CTTGAATCACGATTGTATCA+CGG + chr5_3:40985883-40985902 Msa0811690:intron 35.0%
!!! GCGAACTTTTTTTAGAAGCT+TGG + chr5_3:40985952-40985971 Msa0811690:intron 35.0%
GATGATTGATGAATCTTGTG+TGG + chr5_3:40986006-40986025 Msa0811690:intron 35.0%
TTCCTAAACGATCTTATTGG+AGG - chr5_3:40986054-40986073 None:intergenic 35.0%
!! TTCATTGTTCTTTGAAGCAG+TGG - chr5_3:40986088-40986107 None:intergenic 35.0%
TGCTTCAAAGAACAATGAAG+AGG + chr5_3:40986089-40986108 Msa0811690:CDS 35.0%
AAGAACAATGAAGAGGTTGA+TGG + chr5_3:40986096-40986115 Msa0811690:CDS 35.0%
!! TGAAGAGGTTGATGGAAAAT+TGG + chr5_3:40986104-40986123 Msa0811690:CDS 35.0%
!! GAAGAGGTTGATGGAAAATT+GGG + chr5_3:40986105-40986124 Msa0811690:CDS 35.0%
!! TTTGAGGCAATTTTTGTGTC+TGG + chr5_3:40986314-40986333 Msa0811690:intron 35.0%
GCTTATGTTGATGTGATTTC+AGG + chr5_3:40986348-40986367 Msa0811690:intron 35.0%
ATGAGGATAAAGATGGTGAT+TGG + chr5_3:40986454-40986473 Msa0811690:CDS 35.0%
AAACATACTACCAATGTCGA+CGG - chr5_3:40986573-40986592 None:intergenic 35.0%
TTGAGTGTAAACACATGTGT+TGG + chr5_3:40986607-40986626 Msa0811690:intron 35.0%
! ATGCAAATTTTGCAGCATTG+TGG + chr5_3:40986870-40986889 Msa0811690:intron 35.0%
!!! AGGTAAGAAACTGCCATTTT+TGG + chr5_3:40986936-40986955 Msa0811690:intron 35.0%
GCAGTACAAATAGTACAGTA+TGG - chr5_3:40987016-40987035 None:intergenic 35.0%
CTGTACTATTTGTACTGCAT+TGG + chr5_3:40987018-40987037 Msa0811690:intron 35.0%
!!! ACAAGCGCTAAGTTTTGAAT+TGG - chr5_3:40987104-40987123 None:intergenic 35.0%
ATGACTGCATGTTTGGAAAT+TGG - chr5_3:40987226-40987245 None:intergenic 35.0%
TTAGTGTATGACTGCATGTT+TGG - chr5_3:40987233-40987252 None:intergenic 35.0%
! CGATTTTATTGAAAGGGATG+AGG + chr5_3:40987358-40987377 Msa0811690:intron 35.0%
GATGAGGAAAATTCTTAGAG+AGG + chr5_3:40987374-40987393 Msa0811690:intron 35.0%
GGATGTTTATTGATACATGC+AGG + chr5_3:40987504-40987523 Msa0811690:intron 35.0%
TGTTTATTGATACATGCAGG+AGG + chr5_3:40987507-40987526 Msa0811690:CDS 35.0%
GGAATACTAACCTAAACCAA+TGG - chr5_3:40987558-40987577 None:intergenic 35.0%
!!! TACTTTTTTCAACTGCTCTG+GGG - chr5_3:40987803-40987822 None:intergenic 35.0%
! GGTTGAGAGTACAAAGAGAA+AGG - chr5_3:40984267-40984286 None:intergenic 40.0%
! GTGAGAGAGTTTAGAGGTTT+TGG - chr5_3:40984288-40984307 None:intergenic 40.0%
AGAGAAGTGAGAGAGTTTAG+AGG - chr5_3:40984294-40984313 None:intergenic 40.0%
TCATTGTGATGTCTCTACCA+AGG + chr5_3:40984847-40984866 Msa0811690:exon 40.0%
! CCCATGTAGTTGAACTCTTT+TGG - chr5_3:40984948-40984967 None:intergenic 40.0%
!!! GAATCAAAGCCTGCTGTTTT+AGG + chr5_3:40985197-40985216 Msa0811690:CDS 40.0%
TCCCTCTGAATTGATTATGC+AGG + chr5_3:40985454-40985473 Msa0811690:intron 40.0%
CCCTGCATAATCAATTCAGA+GGG - chr5_3:40985458-40985477 None:intergenic 40.0%
CCCTCTGAATTGATTATGCA+GGG + chr5_3:40985455-40985474 Msa0811690:intron 40.0%
CCTCTGAATTGATTATGCAG+GGG + chr5_3:40985456-40985475 Msa0811690:intron 40.0%
!!! TTCTCAAGCATTTTGGAGCT+AGG - chr5_3:40985491-40985510 None:intergenic 40.0%
!! CAGTTAAGATTGGTCTTGAG+AGG + chr5_3:40985549-40985568 Msa0811690:CDS 40.0%
TTGCTTTCACCAACACCATT+AGG - chr5_3:40985575-40985594 None:intergenic 40.0%
GTTGCAGAACCATTAAGACT+TGG - chr5_3:40985599-40985618 None:intergenic 40.0%
TGGCATTAGAGTTTACTGCA+AGG + chr5_3:40985669-40985688 Msa0811690:intron 40.0%
! GACATCGTGGTTTTTGATGT+TGG - chr5_3:40985914-40985933 None:intergenic 40.0%
ATTGATGAATCTTGTGTGGC+AGG + chr5_3:40986010-40986029 Msa0811690:intron 40.0%
TTGATGAATCTTGTGTGGCA+GGG + chr5_3:40986011-40986030 Msa0811690:intron 40.0%
! GTTGATGGAAAATTGGGATC+AGG + chr5_3:40986111-40986130 Msa0811690:CDS 40.0%
! ATGTTCAGCTGTTTCACCAT+AGG + chr5_3:40986240-40986259 Msa0811690:CDS 40.0%
AACCTATTCCTACCTACCTA+TGG - chr5_3:40986259-40986278 None:intergenic 40.0%
TCAGGTCAATGTGAATCTCA+TGG + chr5_3:40986366-40986385 Msa0811690:intron 40.0%
!! CGATTAATGAAGCACTGACA+CGG + chr5_3:40986533-40986552 Msa0811690:intron 40.0%
TGAAATAGGTGGTCCATGTA+AGG + chr5_3:40986901-40986920 Msa0811690:intron 40.0%
GCCGTAGTTAGACGAAATAA+TGG + chr5_3:40987132-40987151 Msa0811690:intron 40.0%
GAATATGTTACATGGGGCTT+AGG + chr5_3:40987255-40987274 Msa0811690:intron 40.0%
!! GGTGTTGGAATTAGTTTGCA+AGG - chr5_3:40987462-40987481 None:intergenic 40.0%
!!! ACTTTTTTCAACTGCTCTGG+GGG - chr5_3:40987802-40987821 None:intergenic 40.0%
TCTCTACCAAGGCTAGGAAT+AGG + chr5_3:40984858-40984877 Msa0811690:CDS 45.0%
TCATCACCTATTCCTAGCCT+TGG - chr5_3:40984867-40984886 None:intergenic 45.0%
GAACTTAGATTGGGACTTCC+AGG + chr5_3:40985065-40985084 Msa0811690:CDS 45.0%
CTTTCAGGAGAAAGTGATCC+TGG - chr5_3:40985086-40985105 None:intergenic 45.0%
! TGAGGGTGCAAAGGAAAAAG+AGG - chr5_3:40985158-40985177 None:intergenic 45.0%
TCCTTTGCACCCTCAAAAAG+AGG + chr5_3:40985163-40985182 Msa0811690:CDS 45.0%
!! TCCTCTTTTTGAGGGTGCAA+AGG - chr5_3:40985167-40985186 None:intergenic 45.0%
CCCCTGCATAATCAATTCAG+AGG - chr5_3:40985459-40985478 None:intergenic 45.0%
!! ATTGGTCTTGAGAGGCCTAA+TGG + chr5_3:40985557-40985576 Msa0811690:CDS 45.0%
CTCCTGCTAGCAAGTAAGTA+GGG + chr5_3:40985636-40985655 Msa0811690:intron 45.0%
GTAAGTAGGGTGGTGTGAAT+TGG + chr5_3:40985649-40985668 Msa0811690:intron 45.0%
CTCAGATTGCGGTCAAATAG+TGG + chr5_3:40985805-40985824 Msa0811690:intron 45.0%
CATCAAAAACCACGATGTCG+CGG + chr5_3:40985915-40985934 Msa0811690:intron 45.0%
AAAGTTCGCAACCGAAGTCT+GGG - chr5_3:40985941-40985960 None:intergenic 45.0%
AAAAGTTCGCAACCGAAGTC+TGG - chr5_3:40985942-40985961 None:intergenic 45.0%
GGCCTCCAATAAGATCGTTT+AGG + chr5_3:40986049-40986068 Msa0811690:CDS 45.0%
GATGGAAAATTGGGATCAGG+AGG + chr5_3:40986114-40986133 Msa0811690:CDS 45.0%
TGTGTTTGTGAAGGTCAGCA+TGG + chr5_3:40986140-40986159 Msa0811690:CDS 45.0%
TTTGTGAAGGTCAGCATGGA+TGG + chr5_3:40986144-40986163 Msa0811690:CDS 45.0%
! TCAGCTGTTTCACCATAGGT+AGG + chr5_3:40986244-40986263 Msa0811690:intron 45.0%
CTGTTTCACCATAGGTAGGT+AGG + chr5_3:40986248-40986267 Msa0811690:intron 45.0%
CACCATAGGTAGGTAGGAAT+AGG + chr5_3:40986254-40986273 Msa0811690:intron 45.0%
TGCTGAATGAAACCAAGCTG+AGG + chr5_3:40986397-40986416 Msa0811690:CDS 45.0%
GCTGAATGAAACCAAGCTGA+GGG + chr5_3:40986398-40986417 Msa0811690:CDS 45.0%
AGATGGTGATTGGATGCTTG+TGG + chr5_3:40986464-40986483 Msa0811690:CDS 45.0%
GATGGTGATTGGATGCTTGT+GGG + chr5_3:40986465-40986484 Msa0811690:CDS 45.0%
GATACTGATACCGTCGACAT+TGG + chr5_3:40986560-40986579 Msa0811690:intron 45.0%
!! CACATGTGTTGGTGTTGTGT+CGG + chr5_3:40986618-40986637 Msa0811690:intron 45.0%
!! GGAATTAGTTTGCAAGGTGC+AGG - chr5_3:40987456-40987475 None:intergenic 45.0%
! ATGAAGAGCTCTGATGCCAT+TGG + chr5_3:40987539-40987558 Msa0811690:CDS 45.0%
!! AGCTCTGATGCCATTGGTTT+AGG + chr5_3:40987545-40987564 Msa0811690:CDS 45.0%
GTGATGTCTCTACCAAGGCT+AGG + chr5_3:40984852-40984871 Msa0811690:exon 50.0%
CTTGAGAGGCCTAATGGTGT+TGG + chr5_3:40985563-40985582 Msa0811690:CDS 50.0%
GCTCCTGCTAGCAAGTAAGT+AGG + chr5_3:40985635-40985654 Msa0811690:intron 50.0%
! CACCCTACTTACTTGCTAGC+AGG - chr5_3:40985641-40985660 None:intergenic 50.0%
CTGCTAGCAAGTAAGTAGGG+TGG + chr5_3:40985639-40985658 Msa0811690:intron 50.0%
CAATCTGAGCTGCGACATCA+TGG - chr5_3:40985794-40985813 None:intergenic 50.0%
TGATGTCGCAGCTCAGATTG+CGG + chr5_3:40985794-40985813 Msa0811690:intron 50.0%
!! AGGAGGTGCTGTGTTTGTGA+AGG + chr5_3:40986131-40986150 Msa0811690:CDS 50.0%
ATGAAGCAGATCCCTCAGCT+TGG - chr5_3:40986412-40986431 None:intergenic 50.0%
AAGCTGAGGGATCTGCTTCA+TGG + chr5_3:40986411-40986430 Msa0811690:CDS 50.0%
AATCTTGTGTGGCAGGGCAC+AGG + chr5_3:40986017-40986036 Msa0811690:intron 55.0%
TGCTTGTGGGTGATGTTCCC+TGG + chr5_3:40986478-40986497 Msa0811690:CDS 55.0%
GCTTGTGGGTGATGTTCCCT+GGG + chr5_3:40986479-40986498 Msa0811690:CDS 55.0%
TGTGGCAGGGCACAGGTTGT+TGG + chr5_3:40986024-40986043 Msa0811690:intron 60.0%
GCAGGGCACAGGTTGTTGGT+TGG + chr5_3:40986028-40986047 Msa0811690:intron 60.0%
!! CTGCTCTGGGGGCTGCAAAA+TGG - chr5_3:40987791-40987810 None:intergenic 60.0%
AAGTCTGGGCCGCGACATCG+TGG - chr5_3:40985927-40985946 None:intergenic 65.0%
CGATGTCGCGGCCCAGACTT+CGG + chr5_3:40985927-40985946 Msa0811690:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 40984154 40988123 40984154 ID=Msa0811690;Name=Msa0811690
chr5_3 mRNA 40984154 40988123 40984154 ID=Msa0811690-mRNA-1;Parent=Msa0811690;Name=Msa0811690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=258|1|1|1|0.83|0.71|7|287|347
chr5_3 exon 40984154 40984357 40984154 ID=Msa0811690-mRNA-1:exon:12620;Parent=Msa0811690-mRNA-1
chr5_3 exon 40984801 40985262 40984801 ID=Msa0811690-mRNA-1:exon:12621;Parent=Msa0811690-mRNA-1
chr5_3 exon 40985476 40985648 40985476 ID=Msa0811690-mRNA-1:exon:12622;Parent=Msa0811690-mRNA-1
chr5_3 exon 40986032 40986261 40986032 ID=Msa0811690-mRNA-1:exon:12623;Parent=Msa0811690-mRNA-1
chr5_3 exon 40986370 40986502 40986370 ID=Msa0811690-mRNA-1:exon:12624;Parent=Msa0811690-mRNA-1
chr5_3 exon 40987505 40987566 40987505 ID=Msa0811690-mRNA-1:exon:12625;Parent=Msa0811690-mRNA-1
chr5_3 exon 40987799 40988123 40987799 ID=Msa0811690-mRNA-1:exon:12626;Parent=Msa0811690-mRNA-1
chr5_3 five_prime_UTR 40984154 40984357 40984154 ID=Msa0811690-mRNA-1:five_prime_utr;Parent=Msa0811690-mRNA-1
chr5_3 five_prime_UTR 40984801 40984854 40984801 ID=Msa0811690-mRNA-1:five_prime_utr;Parent=Msa0811690-mRNA-1
chr5_3 CDS 40984855 40985262 40984855 ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1
chr5_3 CDS 40985476 40985648 40985476 ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1
chr5_3 CDS 40986032 40986261 40986032 ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1
chr5_3 CDS 40986370 40986502 40986370 ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1
chr5_3 CDS 40987505 40987566 40987505 ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1
chr5_3 CDS 40987799 40987836 40987799 ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1
chr5_3 three_prime_UTR 40987837 40988123 40987837 ID=Msa0811690-mRNA-1:three_prime_utr;Parent=Msa0811690-mRNA-1
Gene Sequence

>Msa0811690

ATGTCTCTACCAAGGCTAGGAATAGGTGATGAAGAAAGTAAAAACAATGTTACTTTGTTGGAAAAAAGTGTGTGTTTGAATGGTTCAAAACCAAAAGAGTTCAACTACATGGGATTATCATCCTCTAATTGTTCATCACTGGATAGTTCAGTTCCAAAAATTCAATCTTTTAAAGATGAGACCAAAAGTAATTTGAATCTTAAAGCTACTGAACTTAGATTGGGACTTCCAGGATCACTTTCTCCTGAAAGAGATTCATCAGATTTTTGTTTGAGAAGTTCAAAGCAGTTTGATGAAAAGCCTCTTTTTCCTTTGCACCCTCAAAAAGAGGATCATCTTTTTGAATCAAAGCCTGCTGTTTTAGGTAACAAAAGAGGGTTTTCTGATGCCATGAATGTTTTTTCAGAGGGGAAATTGAAGCCTAGCTCCAAAATGCTTGAGAATGTTGCTTGGCAGAAAGTGAAAGCCGATGAAATAGCAACAGTTAAGATTGGTCTTGAGAGGCCTAATGGTGTTGGTGAAAGCAAACCAAGTCTTAATGGTTCTGCAACTAATGGAAATAGCACTGCTCCTGCTAGCAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCGTTTAGGAAAAATTCATTGACCACTGCTTCAAAGAACAATGAAGAGGTTGATGGAAAATTGGGATCAGGAGGTGCTGTGTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATTTGAGAAAAGTAGACTTGAAGAATTACACTGCATATTCACAACTATCTTCTTCTCTTGAGAAGATGTTCAGCTGTTTCACCATAGGTCAATGTGAATCTCATGGAAATCAGATGCTGAATGAAACCAAGCTGAGGGATCTGCTTCATGGTTCAGAATATGTTATTACTTATGAGGATAAAGATGGTGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGATACATGCAGGAGGCTAAGAATCATGAAGAGCTCTGATGCCATTGGTTTAGCCCCCAGAGCAGTTGAAAAAAGTAAAAGCAGGAACTAA

Protein sequence

>Msa0811690

MSLPRLGIGDEESKNNVTLLEKSVCLNGSKPKEFNYMGLSSSNCSSLDSSVPKIQSFKDETKSNLNLKATELRLGLPGSLSPERDSSDFCLRSSKQFDEKPLFPLHPQKEDHLFESKPAVLGNKRGFSDAMNVFSEGKLKPSSKMLENVAWQKVKADEIATVKIGLERPNGVGESKPSLNGSATNGNSTAPASKAQVVGWPPIRSFRKNSLTTASKNNEEVDGKLGSGGAVFVKVSMDGAPYLRKVDLKNYTAYSQLSSSLEKMFSCFTIGQCESHGNQMLNETKLRDLLHGSEYVITYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRAVEKSKSRN*