Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0811690 | XP_003615390.1 | 96.830 | 347 | 11 | 0 | 1 | 347 | 1 | 347 | 0.0 | 686 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0811690 | sp|Q38826|IAA8_ARATH | 55.655 | 336 | 110 | 12 | 20 | 346 | 13 | 318 | 5.94e-107 | 318 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0811690 | G7K618 | 96.830 | 347 | 11 | 0 | 1 | 347 | 1 | 347 | 0.0 | 686 |
Gene ID | Type | Classification |
---|---|---|
Msa0811690 | TR | AUX/IAA |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003080 | Msa0811690 | 0.810755 | 9.845223e-51 | -8.615850e-47 |
Msa0014770 | Msa0811690 | 0.837101 | 6.337991e-57 | -8.615850e-47 |
Msa0017670 | Msa0811690 | 0.813417 | 2.587158e-51 | -8.615850e-47 |
Msa0025160 | Msa0811690 | 0.827412 | 1.586692e-54 | -8.615850e-47 |
Msa0032460 | Msa0811690 | 0.803290 | 3.741471e-49 | -8.615850e-47 |
Msa0033220 | Msa0811690 | 0.826128 | 3.214378e-54 | -8.615850e-47 |
Msa0042640 | Msa0811690 | 0.800745 | 1.247641e-48 | -8.615850e-47 |
Msa0044160 | Msa0811690 | 0.815777 | 7.768312e-52 | -8.615850e-47 |
Msa0050790 | Msa0811690 | 0.802206 | 6.261132e-49 | -8.615850e-47 |
Msa0072520 | Msa0811690 | 0.834374 | 3.110367e-56 | -8.615850e-47 |
Msa0077340 | Msa0811690 | 0.831853 | 1.319318e-55 | -8.615850e-47 |
Msa0077560 | Msa0811690 | 0.814486 | 1.503236e-51 | -8.615850e-47 |
Msa0079880 | Msa0811690 | 0.828763 | 7.504643e-55 | -8.615850e-47 |
Msa0080030 | Msa0811690 | 0.839874 | 1.220124e-57 | -8.615850e-47 |
Msa0098040 | Msa0811690 | 0.800624 | 1.320486e-48 | -8.615850e-47 |
Msa0108630 | Msa0811690 | 0.836993 | 6.753951e-57 | -8.615850e-47 |
Msa0113340 | Msa0811690 | 0.800165 | 1.637640e-48 | -8.615850e-47 |
Msa0607800 | Msa0811690 | 0.811425 | 7.046372e-51 | -8.615850e-47 |
Msa0610690 | Msa0811690 | 0.858452 | 8.157083e-63 | -8.615850e-47 |
Msa0619710 | Msa0811690 | 0.810919 | 9.073786e-51 | -8.615850e-47 |
Msa0630440 | Msa0811690 | 0.813877 | 2.048600e-51 | -8.615850e-47 |
Msa0648040 | Msa0811690 | 0.803925 | 2.762037e-49 | -8.615850e-47 |
Msa0652770 | Msa0811690 | 0.830171 | 3.412032e-55 | -8.615850e-47 |
Msa0674480 | Msa0811690 | 0.808007 | 3.825887e-50 | -8.615850e-47 |
Msa0687090 | Msa0811690 | 0.813567 | 2.397752e-51 | -8.615850e-47 |
Msa0689660 | Msa0811690 | 0.801060 | 1.075872e-48 | -8.615850e-47 |
Msa0703950 | Msa0811690 | 0.834749 | 2.503793e-56 | -8.615850e-47 |
Msa0706150 | Msa0811690 | 0.805065 | 1.597962e-49 | -8.615850e-47 |
Msa0709440 | Msa0811690 | 0.803603 | 3.221415e-49 | -8.615850e-47 |
Msa0722890 | Msa0811690 | 0.804666 | 1.936086e-49 | -8.615850e-47 |
Msa0726170 | Msa0811690 | -0.818585 | 1.815527e-52 | -8.615850e-47 |
Msa0733080 | Msa0811690 | 0.841080 | 5.903091e-58 | -8.615850e-47 |
Msa0752780 | Msa0811690 | 0.818743 | 1.671912e-52 | -8.615850e-47 |
Msa0761310 | Msa0811690 | 0.810479 | 1.129187e-50 | -8.615850e-47 |
Msa0774060 | Msa0811690 | 0.919623 | 3.572323e-87 | -8.615850e-47 |
Msa0780910 | Msa0811690 | 0.827890 | 1.218161e-54 | -8.615850e-47 |
Msa0795750 | Msa0811690 | 0.842032 | 3.311171e-58 | -8.615850e-47 |
Msa0798080 | Msa0811690 | 0.809794 | 1.587007e-50 | -8.615850e-47 |
Msa0811690 | Msa0821160 | 0.814140 | 1.792511e-51 | -8.615850e-47 |
Msa0811690 | Msa0851850 | 0.940486 | 2.151138e-100 | -8.615850e-47 |
Msa0811690 | Msa0865420 | 0.810457 | 1.141666e-50 | -8.615850e-47 |
Msa0811690 | Msa0894790 | 0.814263 | 1.684210e-51 | -8.615850e-47 |
Msa0811690 | Msa0909760 | 0.809984 | 1.443868e-50 | -8.615850e-47 |
Msa0811690 | Msa0921590 | 0.819449 | 1.154989e-52 | -8.615850e-47 |
Msa0811690 | Msa0945190 | 0.817537 | 3.132902e-52 | -8.615850e-47 |
Msa0811690 | Msa0956350 | 0.823444 | 1.380435e-53 | -8.615850e-47 |
Msa0811690 | Msa0960260 | 0.809568 | 1.774566e-50 | -8.615850e-47 |
Msa0811690 | Msa0967070 | 0.823440 | 1.383917e-53 | -8.615850e-47 |
Msa0811690 | Msa0994720 | 0.823796 | 1.141955e-53 | -8.615850e-47 |
Msa0811690 | Msa1021590 | 0.827555 | 1.466739e-54 | -8.615850e-47 |
Msa0811690 | Msa1022420 | 0.824340 | 8.513693e-54 | -8.615850e-47 |
Msa0811690 | Msa1025560 | 0.812895 | 3.366918e-51 | -8.615850e-47 |
Msa0811690 | Msa1042160 | 0.833111 | 6.434441e-56 | -8.615850e-47 |
Msa0811690 | Msa1042190 | 0.827845 | 1.249431e-54 | -8.615850e-47 |
Msa0811690 | Msa1044250 | 0.836854 | 7.329889e-57 | -8.615850e-47 |
Msa0811690 | Msa1080000 | 0.815112 | 1.092485e-51 | -8.615850e-47 |
Msa0811690 | Msa1084530 | 0.800265 | 1.562922e-48 | -8.615850e-47 |
Msa0811690 | Msa1102060 | -0.817475 | 3.234848e-52 | -8.615850e-47 |
Msa0811690 | Msa1104110 | 0.815541 | 8.767327e-52 | -8.615850e-47 |
Msa0811690 | Msa1105640 | 0.806476 | 8.076202e-50 | -8.615850e-47 |
Msa0811690 | Msa1114690 | 0.820754 | 5.803223e-53 | -8.615850e-47 |
Msa0811690 | Msa1125820 | 0.806874 | 6.654437e-50 | -8.615850e-47 |
Msa0811690 | Msa1125990 | 0.807530 | 4.832757e-50 | -8.615850e-47 |
Msa0811690 | Msa1132530 | 0.804902 | 1.728778e-49 | -8.615850e-47 |
Msa0811690 | Msa1133750 | 0.812216 | 4.740408e-51 | -8.615850e-47 |
Msa0811690 | Msa1147700 | 0.824148 | 9.445509e-54 | -8.615850e-47 |
Msa0811690 | Msa1148960 | 0.811876 | 5.623332e-51 | -8.615850e-47 |
Msa0811690 | Msa1154550 | 0.815499 | 8.961691e-52 | -8.615850e-47 |
Msa0811690 | Msa1166190 | 0.833560 | 4.972899e-56 | -8.615850e-47 |
Msa0811690 | Msa1166290 | 0.840774 | 7.102651e-58 | -8.615850e-47 |
Msa0811690 | Msa1167470 | 0.826814 | 2.207047e-54 | -8.615850e-47 |
Msa0811690 | Msa1171290 | 0.804088 | 2.554357e-49 | -8.615850e-47 |
Msa0811690 | Msa1183900 | 0.806393 | 8.409015e-50 | -8.615850e-47 |
Msa0811690 | Msa1194240 | 0.829422 | 5.195060e-55 | -8.615850e-47 |
Msa0811690 | Msa1205110 | 0.813598 | 2.360672e-51 | -8.615850e-47 |
Msa0811690 | Msa1216090 | 0.814132 | 1.800472e-51 | -8.615850e-47 |
Msa0811690 | Msa1216340 | 0.856987 | 2.217412e-62 | -8.615850e-47 |
Msa0811690 | Msa1219930 | 0.851542 | 8.294586e-61 | -8.615850e-47 |
Msa0811690 | Msa1254100 | 0.804681 | 1.921844e-49 | -8.615850e-47 |
Msa0811690 | Msa1262590 | 0.825039 | 5.825430e-54 | -8.615850e-47 |
Msa0811690 | Msa1290380 | 0.804874 | 1.751420e-49 | -8.615850e-47 |
Msa0811690 | Msa1290440 | 0.808585 | 2.881089e-50 | -8.615850e-47 |
Msa0811690 | Msa1303880 | 0.801214 | 1.000758e-48 | -8.615850e-47 |
Msa0811690 | Msa1306570 | 0.816341 | 5.814878e-52 | -8.615850e-47 |
Msa0811690 | Msa1308850 | 0.816156 | 6.395491e-52 | -8.615850e-47 |
Msa0811690 | Msa1308860 | 0.800807 | 1.212094e-48 | -8.615850e-47 |
Msa0811690 | Msa1327800 | 0.809334 | 1.992150e-50 | -8.615850e-47 |
Msa0811690 | Msa1333500 | 0.802262 | 6.098723e-49 | -8.615850e-47 |
Msa0811690 | Msa1349690 | 0.849923 | 2.367213e-60 | -8.615850e-47 |
Msa0811690 | Msa1358290 | 0.828467 | 8.846327e-55 | -8.615850e-47 |
Msa0811690 | Msa1363010 | 0.817960 | 2.514442e-52 | -8.615850e-47 |
Msa0811690 | Msa1368750 | 0.819387 | 1.192981e-52 | -8.615850e-47 |
Msa0811690 | Msa1374790 | 0.822005 | 2.984670e-53 | -8.615850e-47 |
Msa0811690 | Msa1375350 | 0.813745 | 2.191249e-51 | -8.615850e-47 |
Msa0811690 | Msa1383310 | 0.814351 | 1.610581e-51 | -8.615850e-47 |
Msa0811690 | Msa1391500 | 0.828750 | 7.555621e-55 | -8.615850e-47 |
Msa0811690 | Msa1392740 | 0.841778 | 3.865508e-58 | -8.615850e-47 |
Msa0811690 | Msa1396200 | -0.816540 | 5.245727e-52 | -8.615850e-47 |
Msa0811690 | Msa1405460 | 0.828692 | 7.806729e-55 | -8.615850e-47 |
Msa0811690 | Msa1407840 | 0.837939 | 3.866942e-57 | -8.615850e-47 |
Msa0811690 | Msa1409410 | 0.834064 | 3.720398e-56 | -8.615850e-47 |
Msa0811690 | Msa1410160 | 0.855417 | 6.399822e-62 | -8.615850e-47 |
Msa0811690 | Msa1412000 | 0.816625 | 5.022235e-52 | -8.615850e-47 |
Msa0811690 | Msa1414170 | 0.820855 | 5.501511e-53 | -8.615850e-47 |
Msa0811690 | Msa1422860 | 0.814708 | 1.342304e-51 | -8.615850e-47 |
Msa0811690 | Msa1437810 | 0.841331 | 5.070632e-58 | -8.615850e-47 |
Msa0811690 | Msa1440630 | 0.800757 | 1.240888e-48 | -8.615850e-47 |
Msa0811690 | Msa1451820 | 0.824246 | 8.956447e-54 | -8.615850e-47 |
Msa0811690 | Msa1454500 | 0.819942 | 8.910112e-53 | -8.615850e-47 |
Msa0811690 | Msa1455640 | 0.807763 | 4.312248e-50 | -8.615850e-47 |
Msa0811690 | Msa1457890 | 0.808413 | 3.135487e-50 | -8.615850e-47 |
Msa0120790 | Msa0811690 | 0.811538 | 6.660433e-51 | -8.615850e-47 |
Msa0125360 | Msa0811690 | 0.817712 | 2.859729e-52 | -8.615850e-47 |
Msa0142430 | Msa0811690 | 0.822382 | 2.441011e-53 | -8.615850e-47 |
Msa0146650 | Msa0811690 | 0.832443 | 9.425738e-56 | -8.615850e-47 |
Msa0154620 | Msa0811690 | 0.845190 | 4.741009e-59 | -8.615850e-47 |
Msa0161480 | Msa0811690 | 0.807541 | 4.805833e-50 | -8.615850e-47 |
Msa0165640 | Msa0811690 | 0.843761 | 1.148289e-58 | -8.615850e-47 |
Msa0173290 | Msa0811690 | 0.823172 | 1.597926e-53 | -8.615850e-47 |
Msa0176060 | Msa0811690 | 0.827202 | 1.781724e-54 | -8.615850e-47 |
Msa0183710 | Msa0811690 | 0.807491 | 4.925205e-50 | -8.615850e-47 |
Msa0185960 | Msa0811690 | 0.820086 | 8.260513e-53 | -8.615850e-47 |
Msa0203080 | Msa0811690 | 0.840208 | 9.982986e-58 | -8.615850e-47 |
Msa0218020 | Msa0811690 | 0.827181 | 1.802947e-54 | -8.615850e-47 |
Msa0401060 | Msa0811690 | 0.805221 | 1.482046e-49 | -8.615850e-47 |
Msa0430000 | Msa0811690 | 0.802784 | 4.760920e-49 | -8.615850e-47 |
Msa0431200 | Msa0811690 | 0.812019 | 5.233500e-51 | -8.615850e-47 |
Msa0432010 | Msa0811690 | 0.820502 | 6.631345e-53 | -8.615850e-47 |
Msa0437480 | Msa0811690 | 0.801241 | 9.878896e-49 | -8.615850e-47 |
Msa0437520 | Msa0811690 | 0.802588 | 5.224469e-49 | -8.615850e-47 |
Msa0440350 | Msa0811690 | 0.814376 | 1.590262e-51 | -8.615850e-47 |
Msa0447870 | Msa0811690 | 0.831353 | 1.751832e-55 | -8.615850e-47 |
Msa0466880 | Msa0811690 | 0.815471 | 9.089580e-52 | -8.615850e-47 |
Msa0468700 | Msa0811690 | 0.830843 | 2.336626e-55 | -8.615850e-47 |
Msa0471000 | Msa0811690 | 0.806958 | 6.387972e-50 | -8.615850e-47 |
Msa0481890 | Msa0811690 | 0.803066 | 4.163004e-49 | -8.615850e-47 |
Msa0246210 | Msa0811690 | 0.833867 | 4.166860e-56 | -8.615850e-47 |
Msa0281470 | Msa0811690 | 0.810407 | 1.170565e-50 | -8.615850e-47 |
Msa0284800 | Msa0811690 | 0.829742 | 4.342346e-55 | -8.615850e-47 |
Msa0293040 | Msa0811690 | 0.800477 | 1.415210e-48 | -8.615850e-47 |
Msa0330520 | Msa0811690 | 0.848952 | 4.415025e-60 | -8.615850e-47 |
Msa0354840 | Msa0811690 | 0.815739 | 7.920446e-52 | -8.615850e-47 |
Msa0355080 | Msa0811690 | -0.817257 | 3.622132e-52 | -8.615850e-47 |
Msa0484570 | Msa0811690 | 0.805064 | 1.598745e-49 | -8.615850e-47 |
Msa0500570 | Msa0811690 | 0.807068 | 6.054427e-50 | -8.615850e-47 |
Msa0500920 | Msa0811690 | 0.811214 | 7.828512e-51 | -8.615850e-47 |
Msa0513640 | Msa0811690 | 0.821311 | 4.319758e-53 | -8.615850e-47 |
Msa0514580 | Msa0811690 | 0.824523 | 7.709129e-54 | -8.615850e-47 |
Msa0517250 | Msa0811690 | 0.819798 | 9.612402e-53 | -8.615850e-47 |
Msa0519810 | Msa0811690 | 0.812023 | 5.222105e-51 | -8.615850e-47 |
Msa0519840 | Msa0811690 | 0.804025 | 2.632553e-49 | -8.615850e-47 |
Msa0520260 | Msa0811690 | 0.823032 | 1.723044e-53 | -8.615850e-47 |
Msa0529030 | Msa0811690 | 0.827835 | 1.256229e-54 | -8.615850e-47 |
Msa0553750 | Msa0811690 | 0.822944 | 1.806526e-53 | -8.615850e-47 |
Msa0579080 | Msa0811690 | 0.866877 | 2.067110e-65 | -8.615850e-47 |
Msa0579160 | Msa0811690 | 0.881469 | 2.338706e-70 | -8.615850e-47 |
Msa0579220 | Msa0811690 | 0.881178 | 2.977656e-70 | -8.615850e-47 |
Msa0591170 | Msa0811690 | 0.819491 | 1.129451e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0811690 | MtrunA17_Chr5g0428141 | 96.830 | 347 | 11 | 0 | 1 | 347 | 1 | 347 | 0.0 | 686 |
Msa0811690 | MtrunA17_Chr8g0366881 | 63.043 | 322 | 102 | 10 | 32 | 347 | 38 | 348 | 1.29e-131 | 379 |
Msa0811690 | MtrunA17_Chr5g0411501 | 62.883 | 326 | 99 | 10 | 33 | 347 | 21 | 335 | 4.50e-127 | 367 |
Msa0811690 | MtrunA17_Chr2g0331411 | 49.857 | 349 | 121 | 12 | 29 | 347 | 2 | 326 | 1.50e-91 | 276 |
Msa0811690 | MtrunA17_Chr6g0486121 | 53.220 | 295 | 87 | 9 | 57 | 347 | 7 | 254 | 1.21e-87 | 264 |
Msa0811690 | MtrunA17_Chr8g0390281 | 47.273 | 330 | 104 | 9 | 50 | 347 | 2 | 293 | 2.78e-83 | 254 |
Msa0811690 | MtrunA17_Chr1g0190711 | 65.854 | 164 | 51 | 3 | 188 | 346 | 89 | 252 | 2.06e-69 | 217 |
Msa0811690 | MtrunA17_Chr7g0260641 | 65.823 | 158 | 52 | 2 | 191 | 347 | 94 | 250 | 3.37e-68 | 214 |
Msa0811690 | MtrunA17_Chr1g0184791 | 64.596 | 161 | 52 | 4 | 191 | 346 | 84 | 244 | 1.21e-66 | 210 |
Msa0811690 | MtrunA17_Chr1g0187921 | 62.264 | 159 | 58 | 2 | 191 | 347 | 78 | 236 | 1.52e-65 | 207 |
Msa0811690 | MtrunA17_Chr1g0184801 | 56.790 | 162 | 45 | 5 | 178 | 336 | 63 | 202 | 4.65e-50 | 166 |
Msa0811690 | MtrunA17_Chr7g0260621 | 39.711 | 277 | 87 | 6 | 60 | 336 | 6 | 202 | 6.85e-48 | 160 |
Msa0811690 | MtrunA17_Chr1g0166011 | 51.515 | 165 | 56 | 4 | 172 | 336 | 43 | 183 | 1.49e-47 | 159 |
Msa0811690 | MtrunA17_Chr1g0187961 | 52.229 | 157 | 48 | 5 | 180 | 335 | 48 | 178 | 8.12e-47 | 157 |
Msa0811690 | MtrunA17_Chr1g0183251 | 43.478 | 184 | 69 | 5 | 195 | 343 | 81 | 264 | 3.58e-36 | 132 |
Msa0811690 | MtrunA17_Chr4g0004181 | 49.324 | 148 | 46 | 4 | 194 | 339 | 52 | 172 | 1.91e-35 | 127 |
Msa0811690 | MtrunA17_Chr2g0332141 | 50.833 | 120 | 49 | 4 | 232 | 347 | 8 | 121 | 2.40e-33 | 120 |
Msa0811690 | MtrunA17_Chr2g0330951 | 40.217 | 184 | 78 | 6 | 182 | 338 | 85 | 263 | 9.98e-32 | 120 |
Msa0811690 | MtrunA17_Chr8g0340731 | 41.279 | 172 | 83 | 4 | 178 | 331 | 89 | 260 | 2.11e-31 | 119 |
Msa0811690 | MtrunA17_Chr4g0069561 | 34.437 | 151 | 69 | 6 | 186 | 330 | 56 | 182 | 4.21e-19 | 84.0 |
Msa0811690 | MtrunA17_Chr1g0193861 | 40.741 | 108 | 48 | 3 | 230 | 335 | 83 | 176 | 1.99e-17 | 79.0 |
Msa0811690 | MtrunA17_Chr3g0137601 | 31.469 | 143 | 72 | 5 | 196 | 332 | 88 | 210 | 2.32e-16 | 77.0 |
Msa0811690 | MtrunA17_Chr7g0270851 | 38.384 | 99 | 50 | 2 | 230 | 328 | 68 | 155 | 1.13e-15 | 73.9 |
Msa0811690 | MtrunA17_Chr1g0209181 | 31.690 | 142 | 80 | 3 | 187 | 328 | 44 | 168 | 2.19e-15 | 73.6 |
Msa0811690 | MtrunA17_Chr4g0064131 | 31.343 | 134 | 71 | 4 | 197 | 329 | 93 | 206 | 1.59e-14 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0811690 | AT5G65670.2 | 56.875 | 320 | 117 | 9 | 32 | 346 | 32 | 335 | 1.87e-108 | 320 |
Msa0811690 | AT2G22670.3 | 55.655 | 336 | 110 | 12 | 20 | 346 | 13 | 318 | 6.04e-108 | 318 |
Msa0811690 | AT2G22670.1 | 55.655 | 336 | 110 | 12 | 20 | 346 | 13 | 318 | 6.04e-108 | 318 |
Msa0811690 | AT2G22670.4 | 55.655 | 336 | 110 | 12 | 20 | 346 | 30 | 335 | 6.77e-108 | 319 |
Msa0811690 | AT5G65670.1 | 56.522 | 322 | 117 | 10 | 32 | 346 | 32 | 337 | 7.19e-107 | 316 |
Msa0811690 | AT2G22670.5 | 55.060 | 336 | 110 | 13 | 20 | 346 | 13 | 316 | 9.09e-105 | 310 |
Msa0811690 | AT2G22670.2 | 55.060 | 336 | 110 | 13 | 20 | 346 | 13 | 316 | 9.09e-105 | 310 |
Msa0811690 | AT4G29080.1 | 47.734 | 331 | 124 | 8 | 33 | 347 | 8 | 305 | 1.87e-86 | 263 |
Msa0811690 | AT4G14550.1 | 45.070 | 284 | 99 | 8 | 65 | 347 | 1 | 228 | 9.92e-66 | 207 |
Msa0811690 | AT1G04250.1 | 42.160 | 287 | 96 | 6 | 65 | 346 | 7 | 228 | 1.68e-64 | 204 |
Msa0811690 | AT3G04730.1 | 43.098 | 297 | 91 | 8 | 65 | 346 | 2 | 235 | 7.80e-63 | 200 |
Msa0811690 | AT3G23050.1 | 43.902 | 287 | 97 | 9 | 65 | 342 | 6 | 237 | 5.71e-61 | 196 |
Msa0811690 | AT4G14550.2 | 43.956 | 273 | 96 | 8 | 65 | 336 | 1 | 217 | 1.17e-59 | 192 |
Msa0811690 | AT1G04240.1 | 53.548 | 155 | 54 | 4 | 182 | 336 | 50 | 186 | 4.00e-49 | 163 |
Msa0811690 | AT1G04240.2 | 53.548 | 155 | 54 | 4 | 182 | 336 | 150 | 286 | 3.80e-48 | 164 |
Msa0811690 | AT4G14550.3 | 42.231 | 251 | 88 | 8 | 65 | 314 | 1 | 195 | 3.83e-47 | 158 |
Msa0811690 | AT5G43700.1 | 51.299 | 154 | 55 | 3 | 183 | 336 | 49 | 182 | 9.70e-46 | 154 |
Msa0811690 | AT3G23050.2 | 41.154 | 260 | 89 | 9 | 65 | 315 | 6 | 210 | 7.13e-44 | 150 |
Msa0811690 | AT3G23030.1 | 48.980 | 147 | 46 | 2 | 189 | 335 | 53 | 170 | 5.23e-41 | 142 |
Msa0811690 | AT3G15540.1 | 49.359 | 156 | 54 | 5 | 190 | 342 | 64 | 197 | 2.45e-40 | 141 |
Msa0811690 | AT3G23030.2 | 48.980 | 147 | 46 | 2 | 189 | 335 | 140 | 257 | 3.07e-40 | 142 |
Msa0811690 | AT1G52830.1 | 45.333 | 150 | 57 | 4 | 187 | 336 | 61 | 185 | 1.85e-38 | 135 |
Msa0811690 | AT2G33310.2 | 44.624 | 186 | 67 | 6 | 182 | 341 | 62 | 237 | 1.98e-38 | 137 |
Msa0811690 | AT2G33310.3 | 44.624 | 186 | 66 | 7 | 182 | 341 | 62 | 236 | 8.67e-37 | 133 |
Msa0811690 | AT2G33310.1 | 44.624 | 186 | 66 | 7 | 182 | 341 | 62 | 236 | 8.67e-37 | 133 |
Msa0811690 | AT4G28640.1 | 46.914 | 162 | 66 | 4 | 192 | 336 | 84 | 242 | 1.48e-36 | 132 |
Msa0811690 | AT4G28640.3 | 46.875 | 160 | 65 | 4 | 192 | 334 | 84 | 240 | 2.69e-36 | 132 |
Msa0811690 | AT1G04550.2 | 42.564 | 195 | 82 | 5 | 175 | 347 | 50 | 236 | 4.76e-36 | 131 |
Msa0811690 | AT1G15580.1 | 39.665 | 179 | 72 | 4 | 158 | 330 | 11 | 159 | 1.49e-35 | 127 |
Msa0811690 | AT4G28640.2 | 46.875 | 160 | 65 | 4 | 192 | 334 | 84 | 240 | 1.95e-35 | 131 |
Msa0811690 | AT4G14560.1 | 49.655 | 145 | 46 | 3 | 188 | 332 | 47 | 164 | 1.71e-34 | 125 |
Msa0811690 | AT1G04100.1 | 39.655 | 174 | 72 | 5 | 193 | 336 | 90 | 260 | 4.76e-31 | 118 |
Msa0811690 | AT3G16500.1 | 39.205 | 176 | 77 | 5 | 185 | 331 | 78 | 252 | 1.57e-30 | 117 |
Msa0811690 | AT3G16500.2 | 39.205 | 176 | 77 | 5 | 185 | 331 | 78 | 252 | 1.60e-30 | 117 |
Msa0811690 | AT1G51950.1 | 37.647 | 170 | 85 | 4 | 182 | 331 | 82 | 250 | 1.76e-29 | 114 |
Msa0811690 | AT5G25890.1 | 36.686 | 169 | 87 | 3 | 170 | 338 | 22 | 170 | 2.51e-27 | 106 |
Msa0811690 | AT4G14550.4 | 37.198 | 207 | 74 | 6 | 65 | 271 | 1 | 151 | 1.44e-26 | 104 |
Msa0811690 | AT3G17600.1 | 39.375 | 160 | 68 | 8 | 175 | 328 | 18 | 154 | 5.72e-24 | 96.7 |
Msa0811690 | AT3G23050.3 | 36.744 | 215 | 73 | 8 | 65 | 271 | 6 | 165 | 4.45e-23 | 94.7 |
Msa0811690 | AT2G46990.1 | 40.385 | 104 | 50 | 1 | 227 | 330 | 81 | 172 | 1.87e-19 | 85.1 |
Msa0811690 | AT3G62100.1 | 39.604 | 101 | 49 | 1 | 229 | 329 | 81 | 169 | 3.04e-19 | 84.3 |
Msa0811690 | AT3G62100.2 | 39.080 | 87 | 41 | 1 | 229 | 315 | 81 | 155 | 4.96e-14 | 69.3 |
Msa0811690 | AT1G15050.2 | 37.255 | 102 | 51 | 1 | 232 | 333 | 62 | 150 | 7.26e-14 | 68.9 |
Msa0811690 | AT2G46990.2 | 39.080 | 87 | 41 | 1 | 229 | 315 | 83 | 157 | 8.48e-14 | 68.9 |
Msa0811690 | AT1G15050.1 | 37.255 | 102 | 51 | 1 | 232 | 333 | 94 | 182 | 1.62e-13 | 68.6 |
Msa0811690 | AT2G01200.2 | 34.906 | 106 | 56 | 1 | 228 | 333 | 96 | 188 | 8.59e-13 | 66.6 |
Msa0811690 | AT2G01200.1 | 34.906 | 106 | 56 | 1 | 228 | 333 | 96 | 188 | 8.59e-13 | 66.6 |
Msa0811690 | AT4G32280.2 | 32.653 | 98 | 49 | 2 | 231 | 328 | 118 | 198 | 2.59e-12 | 65.9 |
Msa0811690 | AT4G32280.1 | 24.848 | 165 | 76 | 4 | 195 | 328 | 93 | 240 | 3.72e-12 | 65.9 |
Find 74 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTCACACTAAAATGTCTT+AGG | 0.148340 | 5_3:-40987939 | None:intergenic |
TGAAGAGGTTGATGGAAAAT+TGG | 0.178401 | 5_3:+40986104 | Msa0811690:CDS |
GTGAGAGAGTTTAGAGGTTT+TGG | 0.192375 | 5_3:-40984285 | None:intergenic |
AGCAACATTCTCAAGCATTT+TGG | 0.204500 | 5_3:-40985495 | None:intergenic |
AAATCTGATGAATCTCTTTC+AGG | 0.213261 | 5_3:-40985098 | None:intergenic |
TTTGATCTTGCTCATTCTTC+AGG | 0.260580 | 5_3:+40984336 | Msa0811690:five_prime_UTR |
CCCATGTAGTTGAACTCTTT+TGG | 0.273911 | 5_3:-40984945 | None:intergenic |
TTTAAGATTCAAATTACTTT+TGG | 0.274939 | 5_3:-40985036 | None:intergenic |
GAAAGCAAACCAAGTCTTAA+TGG | 0.296319 | 5_3:+40985587 | Msa0811690:CDS |
AGAGAAGTGAGAGAGTTTAG+AGG | 0.313974 | 5_3:-40984291 | None:intergenic |
TGCTTGTGGGTGATGTTCCC+TGG | 0.320651 | 5_3:+40986478 | Msa0811690:CDS |
AGCTCTGATGCCATTGGTTT+AGG | 0.336962 | 5_3:+40987545 | Msa0811690:CDS |
TCTATCTATCTAACTGTCTA+TGG | 0.343074 | 5_3:+40987863 | Msa0811690:three_prime_UTR |
TAAAGCTACTGAACTTAGAT+TGG | 0.345821 | 5_3:+40985055 | Msa0811690:CDS |
GAACTTAGATTGGGACTTCC+AGG | 0.346391 | 5_3:+40985065 | Msa0811690:CDS |
TGTCACAAAGTAACATAAAC+TGG | 0.364553 | 5_3:-40984209 | None:intergenic |
CTTAATGGTTCTGCAACTAA+TGG | 0.371208 | 5_3:+40985602 | Msa0811690:CDS |
ATCCAGTGATGAACAATTAG+AGG | 0.386837 | 5_3:-40984976 | None:intergenic |
CTTTCAGGAGAAAGTGATCC+TGG | 0.402526 | 5_3:-40985083 | None:intergenic |
TTTCACACTAAAATGTCTTA+GGG | 0.405511 | 5_3:-40987938 | None:intergenic |
TTATGTTACTTTGTGACAAA+TGG | 0.407225 | 5_3:+40984214 | Msa0811690:five_prime_UTR |
GAAGAGGTTGATGGAAAATT+GGG | 0.409009 | 5_3:+40986105 | Msa0811690:CDS |
TATTGCATTATATATGTTTG+TGG | 0.411150 | 5_3:+40988009 | Msa0811690:three_prime_UTR |
TGTGGCAGGGCACAGGTTGT+TGG | 0.411315 | 5_3:+40986024 | Msa0811690:intron |
AGAATATGTTATTACTTATG+AGG | 0.411394 | 5_3:+40986437 | Msa0811690:CDS |
GGTTGAGAGTACAAAGAGAA+AGG | 0.412402 | 5_3:-40984264 | None:intergenic |
TTCATTGTTCTTTGAAGCAG+TGG | 0.422775 | 5_3:-40986085 | None:intergenic |
AAGCTGAGGGATCTGCTTCA+TGG | 0.432732 | 5_3:+40986411 | Msa0811690:CDS |
GGCCTCCAATAAGATCGTTT+AGG | 0.457342 | 5_3:+40986049 | Msa0811690:CDS |
GAACTAAGCAGTATCAATAA+TGG | 0.458186 | 5_3:+40987830 | Msa0811690:exon |
AAGAACAATGAAGAGGTTGA+TGG | 0.459868 | 5_3:+40986096 | Msa0811690:CDS |
ATTGGTCTTGAGAGGCCTAA+TGG | 0.460399 | 5_3:+40985557 | Msa0811690:CDS |
TTGCTTTCACCAACACCATT+AGG | 0.462889 | 5_3:-40985572 | None:intergenic |
CTTAACTGTTGCTATTTCAT+CGG | 0.466939 | 5_3:-40985534 | None:intergenic |
TCATCACCTATTCCTAGCCT+TGG | 0.471158 | 5_3:-40984864 | None:intergenic |
GCAGGGCACAGGTTGTTGGT+TGG | 0.475629 | 5_3:+40986028 | Msa0811690:intron |
GAAATAGCAACAGTTAAGAT+TGG | 0.476375 | 5_3:+40985539 | Msa0811690:CDS |
ATCCTCTAATTGTTCATCAC+TGG | 0.478899 | 5_3:+40984974 | Msa0811690:CDS |
TCTCTACCAAGGCTAGGAAT+AGG | 0.484039 | 5_3:+40984858 | Msa0811690:CDS |
TTCCTAAACGATCTTATTGG+AGG | 0.485580 | 5_3:-40986051 | None:intergenic |
GTTGATGGAAAATTGGGATC+AGG | 0.490761 | 5_3:+40986111 | Msa0811690:CDS |
AAAGCTACTGAACTTAGATT+GGG | 0.491159 | 5_3:+40985056 | Msa0811690:CDS |
ATTACTTATGAGGATAAAGA+TGG | 0.497598 | 5_3:+40986447 | Msa0811690:CDS |
ACCAAAAGAGTTCAACTACA+TGG | 0.503124 | 5_3:+40984944 | Msa0811690:CDS |
GCTTGTGGGTGATGTTCCCT+GGG | 0.507108 | 5_3:+40986479 | Msa0811690:CDS |
TCTTATATGTCTTGTTGTGA+AGG | 0.508011 | 5_3:+40987964 | Msa0811690:three_prime_UTR |
ATGAGGATAAAGATGGTGAT+TGG | 0.518002 | 5_3:+40986454 | Msa0811690:CDS |
ATGAAGAGCTCTGATGCCAT+TGG | 0.522246 | 5_3:+40987539 | Msa0811690:CDS |
ATGTTCAGCTGTTTCACCAT+AGG | 0.526626 | 5_3:+40986240 | Msa0811690:CDS |
AATCTTGTGTGGCAGGGCAC+AGG | 0.532182 | 5_3:+40986017 | Msa0811690:intron |
CACCCTACTTACTTGCTAGC+AGG | 0.532961 | 5_3:-40985638 | None:intergenic |
GATGGTGATTGGATGCTTGT+GGG | 0.535428 | 5_3:+40986465 | Msa0811690:CDS |
TGTTACTTTGTGACAAATGG+AGG | 0.536007 | 5_3:+40984217 | Msa0811690:five_prime_UTR |
TTTGTGAAGGTCAGCATGGA+TGG | 0.538161 | 5_3:+40986144 | Msa0811690:CDS |
GGATGTTTATTGATACATGC+AGG | 0.544403 | 5_3:+40987504 | Msa0811690:intron |
TCAGGTCAATGTGAATCTCA+TGG | 0.548741 | 5_3:+40986366 | Msa0811690:intron |
CAGTTAAGATTGGTCTTGAG+AGG | 0.564900 | 5_3:+40985549 | Msa0811690:CDS |
GTTGCAGAACCATTAAGACT+TGG | 0.566322 | 5_3:-40985596 | None:intergenic |
ATGAAGCAGATCCCTCAGCT+TGG | 0.567500 | 5_3:-40986409 | None:intergenic |
AGATGGTGATTGGATGCTTG+TGG | 0.576179 | 5_3:+40986464 | Msa0811690:CDS |
CTTGAGAGGCCTAATGGTGT+TGG | 0.583757 | 5_3:+40985563 | Msa0811690:CDS |
GTGATGTCTCTACCAAGGCT+AGG | 0.589347 | 5_3:+40984852 | Msa0811690:exon |
GGAATACTAACCTAAACCAA+TGG | 0.612277 | 5_3:-40987555 | None:intergenic |
CCAAAAGAGTTCAACTACAT+GGG | 0.615578 | 5_3:+40984945 | Msa0811690:CDS |
AAATGCTTGAGAATGTTGCT+TGG | 0.617788 | 5_3:+40985498 | Msa0811690:CDS |
TGCTTCAAAGAACAATGAAG+AGG | 0.621204 | 5_3:+40986089 | Msa0811690:CDS |
AGTATATAAACTTACTCCCA+GGG | 0.621275 | 5_3:-40986495 | None:intergenic |
TGCTGAATGAAACCAAGCTG+AGG | 0.622855 | 5_3:+40986397 | Msa0811690:CDS |
GCTGAATGAAACCAAGCTGA+GGG | 0.626284 | 5_3:+40986398 | Msa0811690:CDS |
GATGGAAAATTGGGATCAGG+AGG | 0.633939 | 5_3:+40986114 | Msa0811690:CDS |
AGGAGGTGCTGTGTTTGTGA+AGG | 0.651647 | 5_3:+40986131 | Msa0811690:CDS |
TCATTGTGATGTCTCTACCA+AGG | 0.666331 | 5_3:+40984847 | Msa0811690:exon |
TGTGTTTGTGAAGGTCAGCA+TGG | 0.667221 | 5_3:+40986140 | Msa0811690:CDS |
TGTTTATTGATACATGCAGG+AGG | 0.676885 | 5_3:+40987507 | Msa0811690:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCTACTTTTTTATAAAATAA+TGG | + | chr5_3:40985408-40985427 | Msa0811690:intron | 10.0% |
!!! | TTTTTATCAAAAATAGAAAT+TGG | - | chr5_3:40987706-40987725 | None:intergenic | 10.0% |
!!! | TCTTTAAAAGATTGAATTTT+TGG | - | chr5_3:40985011-40985030 | None:intergenic | 15.0% |
!!! | TTTAAGATTCAAATTACTTT+TGG | - | chr5_3:40985039-40985058 | None:intergenic | 15.0% |
!! | AAATTGTTAATTCAATCAAT+AGG | + | chr5_3:40985265-40985284 | Msa0811690:intron | 15.0% |
!! | AATTGTTAATTCAATCAATA+GGG | + | chr5_3:40985266-40985285 | Msa0811690:intron | 15.0% |
!!! | AAAAACTGTTTAACTTAATA+TGG | + | chr5_3:40988053-40988072 | Msa0811690:three_prime_UTR | 15.0% |
!! | AAGTATCAATTTCTATGAAA+TGG | + | chr5_3:40984471-40984490 | Msa0811690:intron | 20.0% |
!! | AGTATCAATTTCTATGAAAT+GGG | + | chr5_3:40984472-40984491 | Msa0811690:intron | 20.0% |
!! | TTTACATCTTTATGCTAAAA+TGG | + | chr5_3:40984516-40984535 | Msa0811690:intron | 20.0% |
!!! | TTTTTCAATGTTTTTGGTTA+AGG | + | chr5_3:40984747-40984766 | Msa0811690:intron | 20.0% |
!!! | AAATGTTGTTCTTTTTTGAT+AGG | + | chr5_3:40984779-40984798 | Msa0811690:intron | 20.0% |
!!! | AATGTTGTTCTTTTTTGATA+GGG | + | chr5_3:40984780-40984799 | Msa0811690:intron | 20.0% |
!!! | TAAAAACAATGTTACTTTGT+TGG | + | chr5_3:40984893-40984912 | Msa0811690:CDS | 20.0% |
!! | AAATCACAAAAATTGAAATG+CGG | - | chr5_3:40985831-40985850 | None:intergenic | 20.0% |
!! | AGAATATGTTATTACTTATG+AGG | + | chr5_3:40986437-40986456 | Msa0811690:CDS | 20.0% |
!! | TGTTTGTAAAAAACTTATCT+AGG | - | chr5_3:40986686-40986705 | None:intergenic | 20.0% |
!! | TTCTATTAATATACCTTACA+TGG | - | chr5_3:40986917-40986936 | None:intergenic | 20.0% |
!! | ATGTAAGGTATATTAATAGA+AGG | + | chr5_3:40986916-40986935 | Msa0811690:intron | 20.0% |
!! | AATAAAAGCTTGAATGATAA+TGG | + | chr5_3:40986983-40987002 | Msa0811690:intron | 20.0% |
!! | AATGTGACTTCAAATTAAAA+TGG | + | chr5_3:40987064-40987083 | Msa0811690:intron | 20.0% |
!! | ACTAAATGAATATGTTACAT+GGG | + | chr5_3:40987248-40987267 | Msa0811690:intron | 20.0% |
!!! | TTTGATACGATTTTATTGAA+AGG | + | chr5_3:40987351-40987370 | Msa0811690:intron | 20.0% |
!!! | TTGATACGATTTTATTGAAA+GGG | + | chr5_3:40987352-40987371 | Msa0811690:intron | 20.0% |
!!! | AAAGTAAATTAAGTTGAAGT+AGG | - | chr5_3:40987682-40987701 | None:intergenic | 20.0% |
!! | TATTGCATTATATATGTTTG+TGG | + | chr5_3:40988009-40988028 | Msa0811690:three_prime_UTR | 20.0% |
!!! | TTATGTTACTTTGTGACAAA+TGG | + | chr5_3:40984214-40984233 | Msa0811690:five_prime_UTR | 25.0% |
!!! | ATGGATTGGTCTAAAAAAAT+TGG | - | chr5_3:40984445-40984464 | None:intergenic | 25.0% |
! | GAAATTGATACTTGTGTTAA+TGG | - | chr5_3:40984464-40984483 | None:intergenic | 25.0% |
!!! | GTTGTGTTTTTCAATGTTTT+TGG | + | chr5_3:40984741-40984760 | Msa0811690:intron | 25.0% |
!!! | TACTGCAAGGTTTTAAATTT+AGG | + | chr5_3:40985682-40985701 | Msa0811690:intron | 25.0% |
! | CTTAACAATGAAAATGAACT+CGG | + | chr5_3:40985980-40985999 | Msa0811690:intron | 25.0% |
!! | TTTTTCCTAAACGATCTTAT+TGG | - | chr5_3:40986057-40986076 | None:intergenic | 25.0% |
!!! | AAGTCTACTTTTCTCAAATA+CGG | - | chr5_3:40986174-40986193 | None:intergenic | 25.0% |
! | ATTACTTATGAGGATAAAGA+TGG | + | chr5_3:40986447-40986466 | Msa0811690:CDS | 25.0% |
! | TGTAAAAAACTTATCTAGGT+TGG | - | chr5_3:40986682-40986701 | None:intergenic | 25.0% |
!!! | TTGTGGTTTTAGATTGAAAT+AGG | + | chr5_3:40986887-40986906 | Msa0811690:intron | 25.0% |
!! | TTTGAATTGGCTTAAATTGT+TGG | - | chr5_3:40987091-40987110 | None:intergenic | 25.0% |
! | CACTAAATGAATATGTTACA+TGG | + | chr5_3:40987247-40987266 | Msa0811690:intron | 25.0% |
! | CTAAATGAATATGTTACATG+GGG | + | chr5_3:40987249-40987268 | Msa0811690:intron | 25.0% |
! | AAATCAAAGTGAAGTAAACA+AGG | - | chr5_3:40987429-40987448 | None:intergenic | 25.0% |
! | GATTGATTGTGTTAAATGAA+TGG | - | chr5_3:40987579-40987598 | None:intergenic | 25.0% |
!! | CACATAATTTGTACTTGAAT+TGG | - | chr5_3:40987761-40987780 | None:intergenic | 25.0% |
! | TTTCACACTAAAATGTCTTA+GGG | - | chr5_3:40987941-40987960 | None:intergenic | 25.0% |
TGTCACAAAGTAACATAAAC+TGG | - | chr5_3:40984212-40984231 | None:intergenic | 30.0% | |
AGAAATATGGAAGCAAAACA+TGG | - | chr5_3:40984385-40984404 | None:intergenic | 30.0% | |
TGACATGTTAGAGAGAAATA+TGG | - | chr5_3:40984398-40984417 | None:intergenic | 30.0% | |
!!! | GGATAGTTTCATGAGTTTTT+TGG | - | chr5_3:40984421-40984440 | None:intergenic | 30.0% |
!! | GATTGGTCTAAAAAAATTGG+TGG | - | chr5_3:40984442-40984461 | None:intergenic | 30.0% |
! | TGATACTTGTGTTAATGGAT+TGG | - | chr5_3:40984459-40984478 | None:intergenic | 30.0% |
ACATCTTTATGCTAAAATGG+TGG | + | chr5_3:40984519-40984538 | Msa0811690:intron | 30.0% | |
! | GAAAAAAGTGTGTGTTTGAA+TGG | + | chr5_3:40984915-40984934 | Msa0811690:CDS | 30.0% |
TAAAGCTACTGAACTTAGAT+TGG | + | chr5_3:40985055-40985074 | Msa0811690:CDS | 30.0% | |
AAAGCTACTGAACTTAGATT+GGG | + | chr5_3:40985056-40985075 | Msa0811690:CDS | 30.0% | |
AAATCTGATGAATCTCTTTC+AGG | - | chr5_3:40985101-40985120 | None:intergenic | 30.0% | |
! | AAAGATGATCCTCTTTTTGA+GGG | - | chr5_3:40985175-40985194 | None:intergenic | 30.0% |
! | AAAAGATGATCCTCTTTTTG+AGG | - | chr5_3:40985176-40985195 | None:intergenic | 30.0% |
!! | CTGTTTTAGGTAACAAAAGA+GGG | + | chr5_3:40985210-40985229 | Msa0811690:CDS | 30.0% |
! | TACCTCTGAAAAAACATTCA+TGG | - | chr5_3:40985246-40985265 | None:intergenic | 30.0% |
ATTCAATCAATAGGGTATGA+TGG | + | chr5_3:40985274-40985293 | Msa0811690:intron | 30.0% | |
!! | CTTAACTGTTGCTATTTCAT+CGG | - | chr5_3:40985537-40985556 | None:intergenic | 30.0% |
GAAATAGCAACAGTTAAGAT+TGG | + | chr5_3:40985539-40985558 | Msa0811690:CDS | 30.0% | |
!!! | CTTTTTTTAGAAGCTTGGTT+TGG | + | chr5_3:40985957-40985976 | Msa0811690:intron | 30.0% |
AATAGTCTTTCAACGATTTG+AGG | + | chr5_3:40986298-40986317 | Msa0811690:intron | 30.0% | |
AGTATATAAACTTACTCCCA+GGG | - | chr5_3:40986498-40986517 | None:intergenic | 30.0% | |
AAGTATATAAACTTACTCCC+AGG | - | chr5_3:40986499-40986518 | None:intergenic | 30.0% | |
TGGGAGTAAGTTTATATACT+TGG | + | chr5_3:40986498-40986517 | Msa0811690:intron | 30.0% | |
!!! | TGGTTTTAGATTGAAATAGG+TGG | + | chr5_3:40986890-40986909 | Msa0811690:intron | 30.0% |
GTCTTCAATAATGCCAAAAA+TGG | - | chr5_3:40986952-40986971 | None:intergenic | 30.0% | |
ACCATTATTTCGTCTAACTA+CGG | - | chr5_3:40987136-40987155 | None:intergenic | 30.0% | |
ATGTTTGGAAATTGGAATCA+TGG | - | chr5_3:40987218-40987237 | None:intergenic | 30.0% | |
TGAAACGCAAAATTGAAAAC+AGG | - | chr5_3:40987292-40987311 | None:intergenic | 30.0% | |
AAATCGTATCAAATTCGCTA+TGG | - | chr5_3:40987344-40987363 | None:intergenic | 30.0% | |
ATGAGGAAAATTCTTAGAGA+GGG | + | chr5_3:40987375-40987394 | Msa0811690:intron | 30.0% | |
AGTTGAGATATATTAGGTGT+TGG | - | chr5_3:40987477-40987496 | None:intergenic | 30.0% | |
GCAAAGAGTTGAGATATATT+AGG | - | chr5_3:40987483-40987502 | None:intergenic | 30.0% | |
AATATATCTCAACTCTTTGC+AGG | + | chr5_3:40987483-40987502 | Msa0811690:intron | 30.0% | |
CAAGTACAAATTATGTGTTG+TGG | + | chr5_3:40987764-40987783 | Msa0811690:intron | 30.0% | |
!!! | TTACTTTTTTCAACTGCTCT+GGG | - | chr5_3:40987804-40987823 | None:intergenic | 30.0% |
!!! | TTTACTTTTTTCAACTGCTC+TGG | - | chr5_3:40987805-40987824 | None:intergenic | 30.0% |
CAGTTGAAAAAAGTAAAAGC+AGG | + | chr5_3:40987808-40987827 | Msa0811690:CDS | 30.0% | |
GAACTAAGCAGTATCAATAA+TGG | + | chr5_3:40987830-40987849 | Msa0811690:exon | 30.0% | |
TCTATCTATCTAACTGTCTA+TGG | + | chr5_3:40987863-40987882 | Msa0811690:three_prime_UTR | 30.0% | |
CTTTCACACTAAAATGTCTT+AGG | - | chr5_3:40987942-40987961 | None:intergenic | 30.0% | |
! | TCTTATATGTCTTGTTGTGA+AGG | + | chr5_3:40987964-40987983 | Msa0811690:three_prime_UTR | 30.0% |
!! | TGTTACTTTGTGACAAATGG+AGG | + | chr5_3:40984217-40984236 | Msa0811690:five_prime_UTR | 35.0% |
TTTGATCTTGCTCATTCTTC+AGG | + | chr5_3:40984336-40984355 | Msa0811690:five_prime_UTR | 35.0% | |
ATATGGAAGCAAAACATGGA+AGG | - | chr5_3:40984381-40984400 | None:intergenic | 35.0% | |
CTTTATGCTAAAATGGTGGT+TGG | + | chr5_3:40984523-40984542 | Msa0811690:intron | 35.0% | |
!! | GTTGTGTTTTTCAACGTTCT+TGG | + | chr5_3:40984626-40984645 | Msa0811690:intron | 35.0% |
ACCAAAAGAGTTCAACTACA+TGG | + | chr5_3:40984944-40984963 | Msa0811690:CDS | 35.0% | |
CCAAAAGAGTTCAACTACAT+GGG | + | chr5_3:40984945-40984964 | Msa0811690:CDS | 35.0% | |
ATCCTCTAATTGTTCATCAC+TGG | + | chr5_3:40984974-40984993 | Msa0811690:CDS | 35.0% | |
ATCCAGTGATGAACAATTAG+AGG | - | chr5_3:40984979-40984998 | None:intergenic | 35.0% | |
! | CTTTTGTTACCTAAAACAGC+AGG | - | chr5_3:40985209-40985228 | None:intergenic | 35.0% |
!! | GCTGTTTTAGGTAACAAAAG+AGG | + | chr5_3:40985209-40985228 | Msa0811690:CDS | 35.0% |
!!! | TGCCATGAATGTTTTTTCAG+AGG | + | chr5_3:40985241-40985260 | Msa0811690:CDS | 35.0% |
!!! | GGTATGATGGTTTTAAACTG+CGG | + | chr5_3:40985287-40985306 | Msa0811690:intron | 35.0% |
! | TACAGCTCACTATTAAGTTG+CGG | + | chr5_3:40985357-40985376 | Msa0811690:intron | 35.0% |
! | AGCAACATTCTCAAGCATTT+TGG | - | chr5_3:40985498-40985517 | None:intergenic | 35.0% |
AAATGCTTGAGAATGTTGCT+TGG | + | chr5_3:40985498-40985517 | Msa0811690:CDS | 35.0% | |
GAAAGCAAACCAAGTCTTAA+TGG | + | chr5_3:40985587-40985606 | Msa0811690:CDS | 35.0% | |
! | CTTAATGGTTCTGCAACTAA+TGG | + | chr5_3:40985602-40985621 | Msa0811690:CDS | 35.0% |
TTTGTAAGTAACTGCGATTC+AGG | - | chr5_3:40985754-40985773 | None:intergenic | 35.0% | |
ATCGCAGTTACTTACAAATG+CGG | + | chr5_3:40985756-40985775 | Msa0811690:intron | 35.0% | |
CTTGAATCACGATTGTATCA+CGG | + | chr5_3:40985883-40985902 | Msa0811690:intron | 35.0% | |
!!! | GCGAACTTTTTTTAGAAGCT+TGG | + | chr5_3:40985952-40985971 | Msa0811690:intron | 35.0% |
GATGATTGATGAATCTTGTG+TGG | + | chr5_3:40986006-40986025 | Msa0811690:intron | 35.0% | |
TTCCTAAACGATCTTATTGG+AGG | - | chr5_3:40986054-40986073 | None:intergenic | 35.0% | |
!! | TTCATTGTTCTTTGAAGCAG+TGG | - | chr5_3:40986088-40986107 | None:intergenic | 35.0% |
TGCTTCAAAGAACAATGAAG+AGG | + | chr5_3:40986089-40986108 | Msa0811690:CDS | 35.0% | |
AAGAACAATGAAGAGGTTGA+TGG | + | chr5_3:40986096-40986115 | Msa0811690:CDS | 35.0% | |
!! | TGAAGAGGTTGATGGAAAAT+TGG | + | chr5_3:40986104-40986123 | Msa0811690:CDS | 35.0% |
!! | GAAGAGGTTGATGGAAAATT+GGG | + | chr5_3:40986105-40986124 | Msa0811690:CDS | 35.0% |
!! | TTTGAGGCAATTTTTGTGTC+TGG | + | chr5_3:40986314-40986333 | Msa0811690:intron | 35.0% |
GCTTATGTTGATGTGATTTC+AGG | + | chr5_3:40986348-40986367 | Msa0811690:intron | 35.0% | |
ATGAGGATAAAGATGGTGAT+TGG | + | chr5_3:40986454-40986473 | Msa0811690:CDS | 35.0% | |
AAACATACTACCAATGTCGA+CGG | - | chr5_3:40986573-40986592 | None:intergenic | 35.0% | |
TTGAGTGTAAACACATGTGT+TGG | + | chr5_3:40986607-40986626 | Msa0811690:intron | 35.0% | |
! | ATGCAAATTTTGCAGCATTG+TGG | + | chr5_3:40986870-40986889 | Msa0811690:intron | 35.0% |
!!! | AGGTAAGAAACTGCCATTTT+TGG | + | chr5_3:40986936-40986955 | Msa0811690:intron | 35.0% |
GCAGTACAAATAGTACAGTA+TGG | - | chr5_3:40987016-40987035 | None:intergenic | 35.0% | |
CTGTACTATTTGTACTGCAT+TGG | + | chr5_3:40987018-40987037 | Msa0811690:intron | 35.0% | |
!!! | ACAAGCGCTAAGTTTTGAAT+TGG | - | chr5_3:40987104-40987123 | None:intergenic | 35.0% |
ATGACTGCATGTTTGGAAAT+TGG | - | chr5_3:40987226-40987245 | None:intergenic | 35.0% | |
TTAGTGTATGACTGCATGTT+TGG | - | chr5_3:40987233-40987252 | None:intergenic | 35.0% | |
! | CGATTTTATTGAAAGGGATG+AGG | + | chr5_3:40987358-40987377 | Msa0811690:intron | 35.0% |
GATGAGGAAAATTCTTAGAG+AGG | + | chr5_3:40987374-40987393 | Msa0811690:intron | 35.0% | |
GGATGTTTATTGATACATGC+AGG | + | chr5_3:40987504-40987523 | Msa0811690:intron | 35.0% | |
TGTTTATTGATACATGCAGG+AGG | + | chr5_3:40987507-40987526 | Msa0811690:CDS | 35.0% | |
GGAATACTAACCTAAACCAA+TGG | - | chr5_3:40987558-40987577 | None:intergenic | 35.0% | |
!!! | TACTTTTTTCAACTGCTCTG+GGG | - | chr5_3:40987803-40987822 | None:intergenic | 35.0% |
! | GGTTGAGAGTACAAAGAGAA+AGG | - | chr5_3:40984267-40984286 | None:intergenic | 40.0% |
! | GTGAGAGAGTTTAGAGGTTT+TGG | - | chr5_3:40984288-40984307 | None:intergenic | 40.0% |
AGAGAAGTGAGAGAGTTTAG+AGG | - | chr5_3:40984294-40984313 | None:intergenic | 40.0% | |
TCATTGTGATGTCTCTACCA+AGG | + | chr5_3:40984847-40984866 | Msa0811690:exon | 40.0% | |
! | CCCATGTAGTTGAACTCTTT+TGG | - | chr5_3:40984948-40984967 | None:intergenic | 40.0% |
!!! | GAATCAAAGCCTGCTGTTTT+AGG | + | chr5_3:40985197-40985216 | Msa0811690:CDS | 40.0% |
TCCCTCTGAATTGATTATGC+AGG | + | chr5_3:40985454-40985473 | Msa0811690:intron | 40.0% | |
CCCTGCATAATCAATTCAGA+GGG | - | chr5_3:40985458-40985477 | None:intergenic | 40.0% | |
CCCTCTGAATTGATTATGCA+GGG | + | chr5_3:40985455-40985474 | Msa0811690:intron | 40.0% | |
CCTCTGAATTGATTATGCAG+GGG | + | chr5_3:40985456-40985475 | Msa0811690:intron | 40.0% | |
!!! | TTCTCAAGCATTTTGGAGCT+AGG | - | chr5_3:40985491-40985510 | None:intergenic | 40.0% |
!! | CAGTTAAGATTGGTCTTGAG+AGG | + | chr5_3:40985549-40985568 | Msa0811690:CDS | 40.0% |
TTGCTTTCACCAACACCATT+AGG | - | chr5_3:40985575-40985594 | None:intergenic | 40.0% | |
GTTGCAGAACCATTAAGACT+TGG | - | chr5_3:40985599-40985618 | None:intergenic | 40.0% | |
TGGCATTAGAGTTTACTGCA+AGG | + | chr5_3:40985669-40985688 | Msa0811690:intron | 40.0% | |
! | GACATCGTGGTTTTTGATGT+TGG | - | chr5_3:40985914-40985933 | None:intergenic | 40.0% |
ATTGATGAATCTTGTGTGGC+AGG | + | chr5_3:40986010-40986029 | Msa0811690:intron | 40.0% | |
TTGATGAATCTTGTGTGGCA+GGG | + | chr5_3:40986011-40986030 | Msa0811690:intron | 40.0% | |
! | GTTGATGGAAAATTGGGATC+AGG | + | chr5_3:40986111-40986130 | Msa0811690:CDS | 40.0% |
! | ATGTTCAGCTGTTTCACCAT+AGG | + | chr5_3:40986240-40986259 | Msa0811690:CDS | 40.0% |
AACCTATTCCTACCTACCTA+TGG | - | chr5_3:40986259-40986278 | None:intergenic | 40.0% | |
TCAGGTCAATGTGAATCTCA+TGG | + | chr5_3:40986366-40986385 | Msa0811690:intron | 40.0% | |
!! | CGATTAATGAAGCACTGACA+CGG | + | chr5_3:40986533-40986552 | Msa0811690:intron | 40.0% |
TGAAATAGGTGGTCCATGTA+AGG | + | chr5_3:40986901-40986920 | Msa0811690:intron | 40.0% | |
GCCGTAGTTAGACGAAATAA+TGG | + | chr5_3:40987132-40987151 | Msa0811690:intron | 40.0% | |
GAATATGTTACATGGGGCTT+AGG | + | chr5_3:40987255-40987274 | Msa0811690:intron | 40.0% | |
!! | GGTGTTGGAATTAGTTTGCA+AGG | - | chr5_3:40987462-40987481 | None:intergenic | 40.0% |
!!! | ACTTTTTTCAACTGCTCTGG+GGG | - | chr5_3:40987802-40987821 | None:intergenic | 40.0% |
TCTCTACCAAGGCTAGGAAT+AGG | + | chr5_3:40984858-40984877 | Msa0811690:CDS | 45.0% | |
TCATCACCTATTCCTAGCCT+TGG | - | chr5_3:40984867-40984886 | None:intergenic | 45.0% | |
GAACTTAGATTGGGACTTCC+AGG | + | chr5_3:40985065-40985084 | Msa0811690:CDS | 45.0% | |
CTTTCAGGAGAAAGTGATCC+TGG | - | chr5_3:40985086-40985105 | None:intergenic | 45.0% | |
! | TGAGGGTGCAAAGGAAAAAG+AGG | - | chr5_3:40985158-40985177 | None:intergenic | 45.0% |
TCCTTTGCACCCTCAAAAAG+AGG | + | chr5_3:40985163-40985182 | Msa0811690:CDS | 45.0% | |
!! | TCCTCTTTTTGAGGGTGCAA+AGG | - | chr5_3:40985167-40985186 | None:intergenic | 45.0% |
CCCCTGCATAATCAATTCAG+AGG | - | chr5_3:40985459-40985478 | None:intergenic | 45.0% | |
!! | ATTGGTCTTGAGAGGCCTAA+TGG | + | chr5_3:40985557-40985576 | Msa0811690:CDS | 45.0% |
CTCCTGCTAGCAAGTAAGTA+GGG | + | chr5_3:40985636-40985655 | Msa0811690:intron | 45.0% | |
GTAAGTAGGGTGGTGTGAAT+TGG | + | chr5_3:40985649-40985668 | Msa0811690:intron | 45.0% | |
CTCAGATTGCGGTCAAATAG+TGG | + | chr5_3:40985805-40985824 | Msa0811690:intron | 45.0% | |
CATCAAAAACCACGATGTCG+CGG | + | chr5_3:40985915-40985934 | Msa0811690:intron | 45.0% | |
AAAGTTCGCAACCGAAGTCT+GGG | - | chr5_3:40985941-40985960 | None:intergenic | 45.0% | |
AAAAGTTCGCAACCGAAGTC+TGG | - | chr5_3:40985942-40985961 | None:intergenic | 45.0% | |
GGCCTCCAATAAGATCGTTT+AGG | + | chr5_3:40986049-40986068 | Msa0811690:CDS | 45.0% | |
GATGGAAAATTGGGATCAGG+AGG | + | chr5_3:40986114-40986133 | Msa0811690:CDS | 45.0% | |
TGTGTTTGTGAAGGTCAGCA+TGG | + | chr5_3:40986140-40986159 | Msa0811690:CDS | 45.0% | |
TTTGTGAAGGTCAGCATGGA+TGG | + | chr5_3:40986144-40986163 | Msa0811690:CDS | 45.0% | |
! | TCAGCTGTTTCACCATAGGT+AGG | + | chr5_3:40986244-40986263 | Msa0811690:intron | 45.0% |
CTGTTTCACCATAGGTAGGT+AGG | + | chr5_3:40986248-40986267 | Msa0811690:intron | 45.0% | |
CACCATAGGTAGGTAGGAAT+AGG | + | chr5_3:40986254-40986273 | Msa0811690:intron | 45.0% | |
TGCTGAATGAAACCAAGCTG+AGG | + | chr5_3:40986397-40986416 | Msa0811690:CDS | 45.0% | |
GCTGAATGAAACCAAGCTGA+GGG | + | chr5_3:40986398-40986417 | Msa0811690:CDS | 45.0% | |
AGATGGTGATTGGATGCTTG+TGG | + | chr5_3:40986464-40986483 | Msa0811690:CDS | 45.0% | |
GATGGTGATTGGATGCTTGT+GGG | + | chr5_3:40986465-40986484 | Msa0811690:CDS | 45.0% | |
GATACTGATACCGTCGACAT+TGG | + | chr5_3:40986560-40986579 | Msa0811690:intron | 45.0% | |
!! | CACATGTGTTGGTGTTGTGT+CGG | + | chr5_3:40986618-40986637 | Msa0811690:intron | 45.0% |
!! | GGAATTAGTTTGCAAGGTGC+AGG | - | chr5_3:40987456-40987475 | None:intergenic | 45.0% |
! | ATGAAGAGCTCTGATGCCAT+TGG | + | chr5_3:40987539-40987558 | Msa0811690:CDS | 45.0% |
!! | AGCTCTGATGCCATTGGTTT+AGG | + | chr5_3:40987545-40987564 | Msa0811690:CDS | 45.0% |
GTGATGTCTCTACCAAGGCT+AGG | + | chr5_3:40984852-40984871 | Msa0811690:exon | 50.0% | |
CTTGAGAGGCCTAATGGTGT+TGG | + | chr5_3:40985563-40985582 | Msa0811690:CDS | 50.0% | |
GCTCCTGCTAGCAAGTAAGT+AGG | + | chr5_3:40985635-40985654 | Msa0811690:intron | 50.0% | |
! | CACCCTACTTACTTGCTAGC+AGG | - | chr5_3:40985641-40985660 | None:intergenic | 50.0% |
CTGCTAGCAAGTAAGTAGGG+TGG | + | chr5_3:40985639-40985658 | Msa0811690:intron | 50.0% | |
CAATCTGAGCTGCGACATCA+TGG | - | chr5_3:40985794-40985813 | None:intergenic | 50.0% | |
TGATGTCGCAGCTCAGATTG+CGG | + | chr5_3:40985794-40985813 | Msa0811690:intron | 50.0% | |
!! | AGGAGGTGCTGTGTTTGTGA+AGG | + | chr5_3:40986131-40986150 | Msa0811690:CDS | 50.0% |
ATGAAGCAGATCCCTCAGCT+TGG | - | chr5_3:40986412-40986431 | None:intergenic | 50.0% | |
AAGCTGAGGGATCTGCTTCA+TGG | + | chr5_3:40986411-40986430 | Msa0811690:CDS | 50.0% | |
AATCTTGTGTGGCAGGGCAC+AGG | + | chr5_3:40986017-40986036 | Msa0811690:intron | 55.0% | |
TGCTTGTGGGTGATGTTCCC+TGG | + | chr5_3:40986478-40986497 | Msa0811690:CDS | 55.0% | |
GCTTGTGGGTGATGTTCCCT+GGG | + | chr5_3:40986479-40986498 | Msa0811690:CDS | 55.0% | |
TGTGGCAGGGCACAGGTTGT+TGG | + | chr5_3:40986024-40986043 | Msa0811690:intron | 60.0% | |
GCAGGGCACAGGTTGTTGGT+TGG | + | chr5_3:40986028-40986047 | Msa0811690:intron | 60.0% | |
!! | CTGCTCTGGGGGCTGCAAAA+TGG | - | chr5_3:40987791-40987810 | None:intergenic | 60.0% |
AAGTCTGGGCCGCGACATCG+TGG | - | chr5_3:40985927-40985946 | None:intergenic | 65.0% | |
CGATGTCGCGGCCCAGACTT+CGG | + | chr5_3:40985927-40985946 | Msa0811690:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 40984154 | 40988123 | 40984154 | ID=Msa0811690;Name=Msa0811690 |
chr5_3 | mRNA | 40984154 | 40988123 | 40984154 | ID=Msa0811690-mRNA-1;Parent=Msa0811690;Name=Msa0811690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=258|1|1|1|0.83|0.71|7|287|347 |
chr5_3 | exon | 40984154 | 40984357 | 40984154 | ID=Msa0811690-mRNA-1:exon:12620;Parent=Msa0811690-mRNA-1 |
chr5_3 | exon | 40984801 | 40985262 | 40984801 | ID=Msa0811690-mRNA-1:exon:12621;Parent=Msa0811690-mRNA-1 |
chr5_3 | exon | 40985476 | 40985648 | 40985476 | ID=Msa0811690-mRNA-1:exon:12622;Parent=Msa0811690-mRNA-1 |
chr5_3 | exon | 40986032 | 40986261 | 40986032 | ID=Msa0811690-mRNA-1:exon:12623;Parent=Msa0811690-mRNA-1 |
chr5_3 | exon | 40986370 | 40986502 | 40986370 | ID=Msa0811690-mRNA-1:exon:12624;Parent=Msa0811690-mRNA-1 |
chr5_3 | exon | 40987505 | 40987566 | 40987505 | ID=Msa0811690-mRNA-1:exon:12625;Parent=Msa0811690-mRNA-1 |
chr5_3 | exon | 40987799 | 40988123 | 40987799 | ID=Msa0811690-mRNA-1:exon:12626;Parent=Msa0811690-mRNA-1 |
chr5_3 | five_prime_UTR | 40984154 | 40984357 | 40984154 | ID=Msa0811690-mRNA-1:five_prime_utr;Parent=Msa0811690-mRNA-1 |
chr5_3 | five_prime_UTR | 40984801 | 40984854 | 40984801 | ID=Msa0811690-mRNA-1:five_prime_utr;Parent=Msa0811690-mRNA-1 |
chr5_3 | CDS | 40984855 | 40985262 | 40984855 | ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1 |
chr5_3 | CDS | 40985476 | 40985648 | 40985476 | ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1 |
chr5_3 | CDS | 40986032 | 40986261 | 40986032 | ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1 |
chr5_3 | CDS | 40986370 | 40986502 | 40986370 | ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1 |
chr5_3 | CDS | 40987505 | 40987566 | 40987505 | ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1 |
chr5_3 | CDS | 40987799 | 40987836 | 40987799 | ID=Msa0811690-mRNA-1:cds;Parent=Msa0811690-mRNA-1 |
chr5_3 | three_prime_UTR | 40987837 | 40988123 | 40987837 | ID=Msa0811690-mRNA-1:three_prime_utr;Parent=Msa0811690-mRNA-1 |
Gene Sequence |
Protein sequence |