AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0481310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481310 MtrunA17_Chr8g0341281 98.033 305 6 0 1 305 1 305 0.0 626
Msa0481310 MtrunA17_Chr8g0389591 72.871 317 73 3 1 305 1 316 2.20e-172 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481310 AT1G14520.2 76.699 309 68 2 1 305 1 309 4.92e-178 494
Msa0481310 AT1G14520.4 75.962 312 67 2 1 305 1 311 6.94e-177 491
Msa0481310 AT1G14520.1 75.962 312 67 2 1 305 1 311 6.94e-177 491
Msa0481310 AT1G14520.3 75.658 304 66 2 1 297 1 303 2.08e-169 473
Msa0481310 AT4G26260.2 71.384 318 78 1 1 305 1 318 4.87e-169 471
Msa0481310 AT4G26260.1 71.698 318 76 2 1 305 1 317 6.25e-169 471
Msa0481310 AT2G19800.1 71.562 320 73 5 1 305 1 317 7.20e-169 471
Msa0481310 AT5G56640.1 75.090 277 68 1 30 305 38 314 8.79e-161 451
Msa0481310 AT5G56640.2 75.090 277 68 1 30 305 8 284 1.42e-160 449

Find 92 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATCAACCTGATTATTT+TGG 0.171522 3_3:+87135052 Msa0481310:CDS
GTGCTTCTCCTTCCTAGTTT+TGG 0.177602 3_3:+87137412 Msa0481310:CDS
CTTTGTTTCTTCCCATCTTT+AGG 0.222674 3_3:-87134850 None:intergenic
TTTCACCACTTCAGCTTTGC+AGG 0.279549 3_3:-87138604 None:intergenic
AAGAAAATGAGAGAGGAGTA+TGG 0.295141 3_3:+87137038 Msa0481310:CDS
CTTGAGAAGTTTCAATTCTC+AGG 0.300025 3_3:+87134905 Msa0481310:five_prime_UTR
GGAGTGATGCTATTTATAAT+TGG 0.334034 3_3:-87134942 None:intergenic
AAATAGTAATAAAATTATTA+AGG 0.337939 3_3:+87134791 Msa0481310:five_prime_UTR
GAAGATTGGCTGCACTTAAC+TGG 0.338706 3_3:+87137206 Msa0481310:CDS
AGGAGTATGGGAAATTGAAC+AGG 0.341571 3_3:+87137051 Msa0481310:CDS
CTAAATATTTGTCCACTTCA+AGG 0.343404 3_3:-87138635 None:intergenic
TTGGAGATTGTCAACTTGTT+TGG 0.358320 3_3:+87134683 Msa0481310:five_prime_UTR
TCTGCATACAACACTAGATA+TGG 0.369151 3_3:+87137832 Msa0481310:CDS
TCATCAAATCTGCAACCAAC+TGG 0.370493 3_3:-87137663 None:intergenic
TCAATGAGGGAGATGTAGTA+TGG 0.376465 3_3:-87138446 None:intergenic
TATGCAGAGTTGTTATAGTC+TGG 0.382673 3_3:-87137817 None:intergenic
ATGCCACAAGCCAACTCATT+TGG 0.388090 3_3:+87135770 Msa0481310:CDS
AGTTTAGTTTATGAAGTAAA+GGG 0.401538 3_3:+87138656 Msa0481310:three_prime_UTR
TTATGGGACTCTTGTCCTGT+TGG 0.417043 3_3:+87134664 None:intergenic
AAACATGTTTGTCCTAAAGA+TGG 0.421851 3_3:+87134838 Msa0481310:five_prime_UTR
ATTTGTGGTTCATCCAAGTC+AGG 0.423334 3_3:-87137134 None:intergenic
AAGTGCAGCCAATCTTCATT+TGG 0.432228 3_3:-87137200 None:intergenic
CTTCCTCAATGGGCTGTTGT+AGG 0.437391 3_3:+87137439 Msa0481310:CDS
ATGAGGAAATTGAGATATGA+AGG 0.443762 3_3:-87134975 None:intergenic
TGTAGCAAGTGCTCAATTTG+TGG 0.448695 3_3:-87137149 None:intergenic
TAGTTTAGTTTATGAAGTAA+AGG 0.457832 3_3:+87138655 Msa0481310:three_prime_UTR
ACAGGGTAGAGATGAGCATA+TGG 0.463184 3_3:+87137069 Msa0481310:CDS
TTAAAACGTATACGATTGCT+TGG 0.465459 3_3:+87134764 Msa0481310:five_prime_UTR
GAGATTAAGTACCATGGATA+AGG 0.469407 3_3:-87137229 None:intergenic
ATTCTCAGGGAAGGACTCTC+CGG 0.478200 3_3:+87134919 Msa0481310:five_prime_UTR
AGGACTATCCAAATGAAGAT+TGG 0.484923 3_3:+87137192 Msa0481310:CDS
CTACATCTCCCTCATTGAAA+AGG 0.497519 3_3:+87138451 Msa0481310:CDS
AGGATGTTGAGAACTTGAAA+TGG 0.504789 3_3:+87138239 Msa0481310:CDS
TGAATCCATTGTCCACCATA+AGG 0.507419 3_3:+87137683 Msa0481310:CDS
TGATGCTATTTATAATTGGC+CGG 0.510215 3_3:-87134938 None:intergenic
ATTAAGTTGTGCAAGTACCT+TGG 0.510460 3_3:+87138687 Msa0481310:three_prime_UTR
CACTTAACTGGCCTTATCCA+TGG 0.511389 3_3:+87137218 Msa0481310:CDS
ACAAGTTGACAATCTCCAAC+AGG 0.513933 3_3:-87134679 None:intergenic
AGATATGAAGGGGTGGCTGT+TGG 0.514277 3_3:-87134963 None:intergenic
TGAACTTACCATAAAATGAA+TGG 0.516608 3_3:-87138065 None:intergenic
GGTTGTTAATGAGACAGAAC+TGG 0.517238 3_3:+87135727 Msa0481310:CDS
AACAGCTGAAGCTATAAGAA+AGG 0.518742 3_3:+87137172 Msa0481310:CDS
TGCTTACAAAATCAAAGGAT+TGG 0.521858 3_3:-87136867 None:intergenic
GAAGTTTCAATTCTCAGGGA+AGG 0.532870 3_3:+87134910 Msa0481310:five_prime_UTR
AGAAAATGAGAGAGGAGTAT+GGG 0.536046 3_3:+87137039 Msa0481310:CDS
ACTTCCCTGCAAAGCTGAAG+TGG 0.537264 3_3:+87138599 Msa0481310:CDS
AGTGAGAGTTGATGTTGAAA+AGG 0.538804 3_3:+87138418 Msa0481310:CDS
AACATGTTTGTCCTAAAGAT+GGG 0.539611 3_3:+87134839 Msa0481310:five_prime_UTR
GCTGAAAGTGAGAGGCAAGA+AGG 0.539626 3_3:+87136811 Msa0481310:CDS
AATGAGGATAGTCATGTTGA+GGG 0.546349 3_3:-87135032 None:intergenic
TTAACAATGTCATGATGTCA+TGG 0.550047 3_3:+87137878 Msa0481310:CDS
AAGTGAGAGGCAAGAAGGAG+TGG 0.553115 3_3:+87136816 Msa0481310:CDS
GGATGAGAGTGACCCTGACT+TGG 0.554579 3_3:+87137121 Msa0481310:CDS
TAATGAGACAGAACTGGAGT+TGG 0.556666 3_3:+87135733 Msa0481310:CDS
AATCAAAGGATTGGTAAATG+TGG 0.558930 3_3:-87136858 None:intergenic
GTTGAATGATTACCTTATGG+TGG 0.561590 3_3:-87137695 None:intergenic
TTGAGAAGTTTCAATTCTCA+GGG 0.563321 3_3:+87134906 Msa0481310:five_prime_UTR
TTTGTAGCTTTACATAGGGA+AGG 0.563583 3_3:+87138190 Msa0481310:intron
ACAGGTGAAGAAAATGAGAG+AGG 0.565209 3_3:+87137031 Msa0481310:intron
TAACAATGTCATGATGTCAT+GGG 0.569057 3_3:+87137879 Msa0481310:CDS
ATGAAAGAGAATAAGAAATG+AGG 0.569242 3_3:-87134992 None:intergenic
GTAGATGCTTACAAAATCAA+AGG 0.571608 3_3:-87136872 None:intergenic
AAGCTGAAGTGGTGAAACAT+TGG 0.577752 3_3:+87138610 Msa0481310:exon
CATCAAATCTGCAACCAACT+GGG 0.577918 3_3:-87137662 None:intergenic
CAGGGTAGAGATGAGCATAT+GGG 0.584187 3_3:+87137070 Msa0481310:CDS
GATTACCTTATGGTGGACAA+TGG 0.589846 3_3:-87137688 None:intergenic
TGAGGAAATTGAGATATGAA+GGG 0.596359 3_3:-87134974 None:intergenic
GGAATTTACTCTGAGAAATG+TGG 0.598713 3_3:+87137853 Msa0481310:CDS
TTCACCACTTCAGCTTTGCA+GGG 0.603653 3_3:-87138603 None:intergenic
GAATAAGACTACTCTACCCT+CGG 0.603870 3_3:+87138020 Msa0481310:CDS
AATAATCAGGTTGATCAATG+AGG 0.611524 3_3:-87135048 None:intergenic
TATGATGAACATAGCAGCCG+AGG 0.612512 3_3:-87138037 None:intergenic
CAATGAGGATAGTCATGTTG+AGG 0.615613 3_3:-87135033 None:intergenic
TTTGTGGTTCATCCAAGTCA+GGG 0.617345 3_3:-87137133 None:intergenic
AAAAGTGTGACCAAATGAGT+TGG 0.621220 3_3:-87135780 None:intergenic
ATCTGATGTTGAGTCAAAGA+CGG 0.628431 3_3:+87135703 Msa0481310:CDS
GGAGTATGGGAAATTGAACA+GGG 0.629264 3_3:+87137052 Msa0481310:CDS
ATTATGCTGCTGAAAGTGAG+AGG 0.640938 3_3:+87136803 Msa0481310:CDS
GAAACATTGGAGCCTTGAAG+TGG 0.644241 3_3:+87138623 Msa0481310:exon
TGAACTTCTGAATGAAGTGG+TGG 0.645478 3_3:+87137100 Msa0481310:CDS
GAGGAAATTGAGATATGAAG+GGG 0.650499 3_3:-87134973 None:intergenic
TAAACACTTGATGAATGATG+AGG 0.651355 3_3:+87138219 Msa0481310:CDS
AACAATGTCATGATGTCATG+GGG 0.651705 3_3:+87137880 Msa0481310:CDS
ATAGGTGACATATACCCAGT+TGG 0.653485 3_3:+87137648 Msa0481310:intron
ACAGAACTGGAGTTGGATGG+TGG 0.659727 3_3:+87135740 Msa0481310:CDS
TGACCAAATGAGTTGGCTTG+TGG 0.660149 3_3:-87135773 None:intergenic
TTGTGAACTTCTGAATGAAG+TGG 0.665499 3_3:+87137097 Msa0481310:CDS
GAGACAGAACTGGAGTTGGA+TGG 0.674706 3_3:+87135737 Msa0481310:CDS
ATGATGAACATAGCAGCCGA+GGG 0.676043 3_3:-87138036 None:intergenic
GAAATTGAGATATGAAGGGG+TGG 0.683739 3_3:-87134970 None:intergenic
TTACCTACAACAGCCCATTG+AGG 0.688120 3_3:-87137442 None:intergenic
TGATGTTGAGTCAAAGACGG+TGG 0.761342 3_3:+87135706 Msa0481310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAGAAAAACTTTTTATTT+TGG + chr3_3:87134719-87134738 Msa0481310:five_prime_UTR 10.0%
!!! TTTGTTTTCTATTAATTAAT+TGG + chr3_3:87135655-87135674 Msa0481310:intron 10.0%
!! TAAATAAATTCAGATAAAAT+TGG + chr3_3:87136002-87136021 Msa0481310:intron 10.0%
!! TTACATTTATATAATATTAG+CGG + chr3_3:87137473-87137492 Msa0481310:intron 10.0%
!! ACAAAGAAAAATTTAATGTT+AGG + chr3_3:87134867-87134886 Msa0481310:five_prime_UTR 15.0%
!! TAAAAATTACCAAAATAATC+AGG - chr3_3:87135064-87135083 None:intergenic 15.0%
!!! TTTTGCTAAAAATAAAGAAA+GGG - chr3_3:87135088-87135107 None:intergenic 15.0%
!!! ATTTTGCTAAAAATAAAGAA+AGG - chr3_3:87135089-87135108 None:intergenic 15.0%
!!! TCACAAATTTCATTTTTTTT+TGG + chr3_3:87135127-87135146 Msa0481310:intron 15.0%
!! AATCAGATCTATAAAAAAAT+TGG + chr3_3:87135565-87135584 Msa0481310:intron 15.0%
!! ATCAGATCTATAAAAAAATT+GGG + chr3_3:87135566-87135585 Msa0481310:intron 15.0%
!! ACAAGTTAAAAAGTTAATTA+AGG + chr3_3:87136062-87136081 Msa0481310:intron 15.0%
!!! TTTCATCCATATTTTTTAAA+CGG - chr3_3:87136218-87136237 None:intergenic 15.0%
!!! TTAGAGATTATATTCATTTT+TGG - chr3_3:87136567-87136586 None:intergenic 15.0%
!! AAAAATAAATGAAAGATTTG+TGG - chr3_3:87136897-87136916 None:intergenic 15.0%
!!! AAATTGAATTGAATTTTGAA+AGG - chr3_3:87137934-87137953 None:intergenic 15.0%
!!! TGAAGAAAGTTTTAAAAATT+TGG + chr3_3:87137973-87137992 Msa0481310:intron 15.0%
!!! GAAGAAAGTTTTAAAAATTT+GGG + chr3_3:87137974-87137993 Msa0481310:intron 15.0%
!!! GAACTTTTAATGTTAATTTT+TGG - chr3_3:87138115-87138134 None:intergenic 15.0%
!! AAAAAATGAAATTTGTGAGA+GGG - chr3_3:87135125-87135144 None:intergenic 20.0%
!! AAAAAAATGAAATTTGTGAG+AGG - chr3_3:87135126-87135145 None:intergenic 20.0%
!!! AAAAATGAAATTTTCTGAGA+GGG - chr3_3:87135203-87135222 None:intergenic 20.0%
!!! AAAAAATGAAATTTTCTGAG+AGG - chr3_3:87135204-87135223 None:intergenic 20.0%
!!! TTTATTTTTGATTTTGCCAT+AGG - chr3_3:87135254-87135273 None:intergenic 20.0%
!! AAATTAAAATGTGAATCGTA+CGG - chr3_3:87135453-87135472 None:intergenic 20.0%
!! GAATACTTGATTTATGAAAT+TGG + chr3_3:87135483-87135502 Msa0481310:intron 20.0%
!!! TTGAAACTTTTTTTGACAAA+AGG + chr3_3:87135594-87135613 Msa0481310:intron 20.0%
!!! GAACTTTTTTATATCGAATT+TGG + chr3_3:87135935-87135954 Msa0481310:intron 20.0%
!!! TTTTTTATATCGAATTTGGA+TGG + chr3_3:87135939-87135958 Msa0481310:intron 20.0%
!!! AGATAATATGGTGTTTTTTT+TGG + chr3_3:87135970-87135989 Msa0481310:intron 20.0%
!! ACATTTCCGTTTAAAAAATA+TGG + chr3_3:87136209-87136228 Msa0481310:intron 20.0%
!! ATGAACATTATAACATATAC+AGG + chr3_3:87137013-87137032 Msa0481310:intron 20.0%
!!! ATTTTTTTTTCTTCCCTTTT+TGG + chr3_3:87137351-87137370 Msa0481310:intron 20.0%
!! ATTGGTTATTAAACCAAAAA+GGG - chr3_3:87137367-87137386 None:intergenic 20.0%
!! AATTGGTTATTAAACCAAAA+AGG - chr3_3:87137368-87137387 None:intergenic 20.0%
!! ATATAATATTAGCGGAAAAA+CGG + chr3_3:87137481-87137500 Msa0481310:intron 20.0%
!!! ACGCTTTTATATTGATATAT+CGG - chr3_3:87137518-87137537 None:intergenic 20.0%
!!! CATTCAACTTATTTTCTATT+TGG + chr3_3:87137710-87137729 Msa0481310:intron 20.0%
!! CATGTAGAAAAAACAAATTA+TGG + chr3_3:87137740-87137759 Msa0481310:intron 20.0%
!! TTGGAAATGTAACATATATT+AGG - chr3_3:87137776-87137795 None:intergenic 20.0%
!!! ATAAGATACCATTCATTTTA+TGG + chr3_3:87138057-87138076 Msa0481310:CDS 20.0%
!!! TTTTTTTCAGCTAGAAAAAA+AGG - chr3_3:87138503-87138522 None:intergenic 20.0%
!! AGTAAAAACTTAATAACTCT+AGG - chr3_3:87138556-87138575 None:intergenic 20.0%
!!! TAGTTTAGTTTATGAAGTAA+AGG + chr3_3:87138655-87138674 Msa0481310:three_prime_UTR 20.0%
!!! AGTTTAGTTTATGAAGTAAA+GGG + chr3_3:87138656-87138675 Msa0481310:three_prime_UTR 20.0%
! ATGAAAGAGAATAAGAAATG+AGG - chr3_3:87134995-87135014 None:intergenic 25.0%
!! ATTGATCAACCTGATTATTT+TGG + chr3_3:87135052-87135071 Msa0481310:CDS 25.0%
! AAAAATGAAATTTGTGAGAG+GGG - chr3_3:87135124-87135143 None:intergenic 25.0%
!!! AAAATGAAATTTTCTGAGAG+GGG - chr3_3:87135202-87135221 None:intergenic 25.0%
!!! TGTTTTTTTTTTTGCTCCTA+TGG + chr3_3:87135235-87135254 Msa0481310:intron 25.0%
!!! TGTGCATAATCTGTATTTTT+TGG + chr3_3:87135366-87135385 Msa0481310:intron 25.0%
! ATATGAGATTGTGAATTTGT+TGG + chr3_3:87135411-87135430 Msa0481310:intron 25.0%
!! TATGAGATTGTGAATTTGTT+GGG + chr3_3:87135412-87135431 Msa0481310:intron 25.0%
! AAAAAAGTTCTTATCCAGAT+CGG - chr3_3:87135925-87135944 None:intergenic 25.0%
! ATGGATAGATCTAGATAATA+TGG + chr3_3:87135958-87135977 Msa0481310:intron 25.0%
!! TTATGCTAACTTGTACTTAA+AGG + chr3_3:87136038-87136057 Msa0481310:intron 25.0%
! AACTATCAATAGGGTTATAT+TGG - chr3_3:87136298-87136317 None:intergenic 25.0%
! ATCATAGAGCAAAAATAACA+GGG - chr3_3:87136476-87136495 None:intergenic 25.0%
! AATCATAGAGCAAAAATAAC+AGG - chr3_3:87136477-87136496 None:intergenic 25.0%
!! TTTTTGCTCTATGATTCTTT+AGG + chr3_3:87136481-87136500 Msa0481310:intron 25.0%
!!! AAAGTCTTTTAACTAACATG+TGG - chr3_3:87136738-87136757 None:intergenic 25.0%
! AGCTATTGTTAATCATAATC+AGG + chr3_3:87136779-87136798 Msa0481310:intron 25.0%
! GCTATTGTTAATCATAATCA+GGG + chr3_3:87136780-87136799 Msa0481310:intron 25.0%
!!! TGTATGTACATTTTTTCAGA+AGG - chr3_3:87136920-87136939 None:intergenic 25.0%
! GCATACACTTAAAAATATGT+AGG + chr3_3:87136971-87136990 Msa0481310:intron 25.0%
! AATGAAGTCATAATGTATCA+TGG - chr3_3:87137287-87137306 None:intergenic 25.0%
!! TCTCTTACCATTTTCTATAT+TGG + chr3_3:87137624-87137643 Msa0481310:intron 25.0%
!! ACCATTTTCTATATTGGTAT+AGG + chr3_3:87137630-87137649 Msa0481310:intron 25.0%
! ACCTATACCAATATAGAAAA+TGG - chr3_3:87137634-87137653 None:intergenic 25.0%
!! TAAGTTGAATGATTACCTTA+TGG - chr3_3:87137701-87137720 None:intergenic 25.0%
!! TTTCCAATTCCAGTATTTTA+AGG + chr3_3:87137789-87137808 Msa0481310:intron 25.0%
! TTTCCTTAAAATACTGGAAT+TGG - chr3_3:87137795-87137814 None:intergenic 25.0%
!!! AAAATTTGGGTGTTGTTTTA+AGG + chr3_3:87137987-87138006 Msa0481310:intron 25.0%
! TGAACTTACCATAAAATGAA+TGG - chr3_3:87138068-87138087 None:intergenic 25.0%
! TCATAACCAATCAAATCAAA+TGG + chr3_3:87138133-87138152 Msa0481310:intron 25.0%
!!! AATTGACCATTTGATTTGAT+TGG - chr3_3:87138142-87138161 None:intergenic 25.0%
!!! TTTGTTTTGTAGCTTTACAT+AGG + chr3_3:87138185-87138204 Msa0481310:intron 25.0%
!!! TTGTTTTGTAGCTTTACATA+GGG + chr3_3:87138186-87138205 Msa0481310:intron 25.0%
! CTAGCTGAAAAAAATTAACA+AGG + chr3_3:87138509-87138528 Msa0481310:intron 25.0%
TTAAAACGTATACGATTGCT+TGG + chr3_3:87134764-87134783 Msa0481310:five_prime_UTR 30.0%
AAACATGTTTGTCCTAAAGA+TGG + chr3_3:87134838-87134857 Msa0481310:five_prime_UTR 30.0%
AACATGTTTGTCCTAAAGAT+GGG + chr3_3:87134839-87134858 Msa0481310:five_prime_UTR 30.0%
! AATGTTAGGATTTTCAGAGA+AGG + chr3_3:87134881-87134900 Msa0481310:five_prime_UTR 30.0%
TTGAGAAGTTTCAATTCTCA+GGG + chr3_3:87134906-87134925 Msa0481310:five_prime_UTR 30.0%
! TGATGCTATTTATAATTGGC+CGG - chr3_3:87134941-87134960 None:intergenic 30.0%
! GGAGTGATGCTATTTATAAT+TGG - chr3_3:87134945-87134964 None:intergenic 30.0%
TGAGGAAATTGAGATATGAA+GGG - chr3_3:87134977-87134996 None:intergenic 30.0%
ATGAGGAAATTGAGATATGA+AGG - chr3_3:87134978-87134997 None:intergenic 30.0%
!! AATAATCAGGTTGATCAATG+AGG - chr3_3:87135051-87135070 None:intergenic 30.0%
AGTTACAATCAAAGGGAAAA+TGG - chr3_3:87135346-87135365 None:intergenic 30.0%
ATGCACAAGTTACAATCAAA+GGG - chr3_3:87135353-87135372 None:intergenic 30.0%
TATGCACAAGTTACAATCAA+AGG - chr3_3:87135354-87135373 None:intergenic 30.0%
!!! GTATTTTTTGGTCTCGATAA+TGG + chr3_3:87135378-87135397 Msa0481310:intron 30.0%
CAAGAATCACGAAATTAACT+GGG - chr3_3:87135545-87135564 None:intergenic 30.0%
TCAAGAATCACGAAATTAAC+TGG - chr3_3:87135546-87135565 None:intergenic 30.0%
!! GGGTTATATTGGTAATTTTG+TGG - chr3_3:87136287-87136306 None:intergenic 30.0%
TTAAAGTTAAAATCCATCGG+CGG - chr3_3:87136323-87136342 None:intergenic 30.0%
CGGTTAAAGTTAAAATCCAT+CGG - chr3_3:87136326-87136345 None:intergenic 30.0%
!!! CGATGGATTTTAACTTTAAC+CGG + chr3_3:87136324-87136343 Msa0481310:intron 30.0%
CAGTAGTTTCAATCGAATTT+GGG + chr3_3:87136347-87136366 Msa0481310:intron 30.0%
! GGATTAAACTTGTCATTTCA+CGG + chr3_3:87136368-87136387 Msa0481310:intron 30.0%
! AATCAAAGGATTGGTAAATG+TGG - chr3_3:87136861-87136880 None:intergenic 30.0%
TGCTTACAAAATCAAAGGAT+TGG - chr3_3:87136870-87136889 None:intergenic 30.0%
GTAGATGCTTACAAAATCAA+AGG - chr3_3:87136875-87136894 None:intergenic 30.0%
AAAGTAGAGATTAAGTACCA+TGG - chr3_3:87137238-87137257 None:intergenic 30.0%
!! AGATCTGCATTGATTCAAAT+TGG - chr3_3:87137385-87137404 None:intergenic 30.0%
ATTTGAATCAATGCAGATCT+TGG + chr3_3:87137385-87137404 Msa0481310:intron 30.0%
! CTGGATTTTCCTTAAAATAC+TGG - chr3_3:87137801-87137820 None:intergenic 30.0%
TTAACAATGTCATGATGTCA+TGG + chr3_3:87137878-87137897 Msa0481310:CDS 30.0%
TAACAATGTCATGATGTCAT+GGG + chr3_3:87137879-87137898 Msa0481310:CDS 30.0%
TAAACACTTGATGAATGATG+AGG + chr3_3:87138219-87138238 Msa0481310:CDS 30.0%
AGGAAATAAAAGCTTTCTTG+AGG - chr3_3:87138483-87138502 None:intergenic 30.0%
ATAACTCTAGGCAAAAACTA+GGG - chr3_3:87138544-87138563 None:intergenic 30.0%
AATAACTCTAGGCAAAAACT+AGG - chr3_3:87138545-87138564 None:intergenic 30.0%
CTAAATATTTGTCCACTTCA+AGG - chr3_3:87138638-87138657 None:intergenic 30.0%
! TTGGAGATTGTCAACTTGTT+TGG + chr3_3:87134683-87134702 Msa0481310:five_prime_UTR 35.0%
! CTTTGTTTCTTCCCATCTTT+AGG - chr3_3:87134853-87134872 None:intergenic 35.0%
CTTGAGAAGTTTCAATTCTC+AGG + chr3_3:87134905-87134924 Msa0481310:five_prime_UTR 35.0%
GAGGAAATTGAGATATGAAG+GGG - chr3_3:87134976-87134995 None:intergenic 35.0%
AATGAGGATAGTCATGTTGA+GGG - chr3_3:87135035-87135054 None:intergenic 35.0%
ATCTGATGTTGAGTCAAAGA+CGG + chr3_3:87135703-87135722 Msa0481310:CDS 35.0%
! AAAAGTGTGACCAAATGAGT+TGG - chr3_3:87135783-87135802 None:intergenic 35.0%
! ACTCATTTGGTCACACTTTT+AGG + chr3_3:87135783-87135802 Msa0481310:CDS 35.0%
CCAGATCGGTATATTCAAAT+GGG - chr3_3:87135911-87135930 None:intergenic 35.0%
TCCAGATCGGTATATTCAAA+TGG - chr3_3:87135912-87135931 None:intergenic 35.0%
AATTCGATTGAAACTACTGC+CGG - chr3_3:87136346-87136365 None:intergenic 35.0%
GCAGTAGTTTCAATCGAATT+TGG + chr3_3:87136346-87136365 Msa0481310:intron 35.0%
AATAGAGGAAAAGGCTCAAT+GGG - chr3_3:87136512-87136531 None:intergenic 35.0%
TAATAGAGGAAAAGGCTCAA+TGG - chr3_3:87136513-87136532 None:intergenic 35.0%
! ATTGAGCCTTTTCCTCTATT+AGG + chr3_3:87136512-87136531 Msa0481310:intron 35.0%
ACCAAGTAGTACTAACATGT+GGG - chr3_3:87136601-87136620 None:intergenic 35.0%
TACCAAGTAGTACTAACATG+TGG - chr3_3:87136602-87136621 None:intergenic 35.0%
GTTAGTACTACTTGGTATGT+TGG + chr3_3:87136605-87136624 Msa0481310:intron 35.0%
GTTGGTACTACTTGATATGT+TGG + chr3_3:87136623-87136642 Msa0481310:intron 35.0%
TTGTGATCCACAGTAGAATT+AGG - chr3_3:87136670-87136689 None:intergenic 35.0%
AAGAAAATGAGAGAGGAGTA+TGG + chr3_3:87137038-87137057 Msa0481310:CDS 35.0%
! AGAAAATGAGAGAGGAGTAT+GGG + chr3_3:87137039-87137058 Msa0481310:CDS 35.0%
TTGTGAACTTCTGAATGAAG+TGG + chr3_3:87137097-87137116 Msa0481310:CDS 35.0%
AACAGCTGAAGCTATAAGAA+AGG + chr3_3:87137172-87137191 Msa0481310:CDS 35.0%
AGGACTATCCAAATGAAGAT+TGG + chr3_3:87137192-87137211 Msa0481310:CDS 35.0%
GAGATTAAGTACCATGGATA+AGG - chr3_3:87137232-87137251 None:intergenic 35.0%
GTTGAATGATTACCTTATGG+TGG - chr3_3:87137698-87137717 None:intergenic 35.0%
TATGCAGAGTTGTTATAGTC+TGG - chr3_3:87137820-87137839 None:intergenic 35.0%
TCTGCATACAACACTAGATA+TGG + chr3_3:87137832-87137851 Msa0481310:CDS 35.0%
! GGAATTTACTCTGAGAAATG+TGG + chr3_3:87137853-87137872 Msa0481310:CDS 35.0%
AACAATGTCATGATGTCATG+GGG + chr3_3:87137880-87137899 Msa0481310:CDS 35.0%
!!! ATTTGGGTGTTGTTTTAAGG+TGG + chr3_3:87137990-87138009 Msa0481310:intron 35.0%
! TTTGTAGCTTTACATAGGGA+AGG + chr3_3:87138190-87138209 Msa0481310:intron 35.0%
AGGATGTTGAGAACTTGAAA+TGG + chr3_3:87138239-87138258 Msa0481310:CDS 35.0%
!! AGTGAGAGTTGATGTTGAAA+AGG + chr3_3:87138418-87138437 Msa0481310:CDS 35.0%
TAACTCTAGGCAAAAACTAG+GGG - chr3_3:87138543-87138562 None:intergenic 35.0%
! ACAAGTTGACAATCTCCAAC+AGG - chr3_3:87134682-87134701 None:intergenic 40.0%
GAAGTTTCAATTCTCAGGGA+AGG + chr3_3:87134910-87134929 Msa0481310:five_prime_UTR 40.0%
GAAATTGAGATATGAAGGGG+TGG - chr3_3:87134973-87134992 None:intergenic 40.0%
CAATGAGGATAGTCATGTTG+AGG - chr3_3:87135036-87135055 None:intergenic 40.0%
GGTTGTTAATGAGACAGAAC+TGG + chr3_3:87135727-87135746 Msa0481310:CDS 40.0%
TAATGAGACAGAACTGGAGT+TGG + chr3_3:87135733-87135752 Msa0481310:CDS 40.0%
CCCATTTGAATATACCGATC+TGG + chr3_3:87135908-87135927 Msa0481310:intron 40.0%
TCGGCGGTTAACTATCAATA+GGG - chr3_3:87136307-87136326 None:intergenic 40.0%
ATCGGCGGTTAACTATCAAT+AGG - chr3_3:87136308-87136327 None:intergenic 40.0%
! TATTGATAGTTAACCGCCGA+TGG + chr3_3:87136307-87136326 Msa0481310:intron 40.0%
TGATTGACACAGTAAATGGG+AGG - chr3_3:87136451-87136470 None:intergenic 40.0%
TCCCATTTACTGTGTCAATC+AGG + chr3_3:87136450-87136469 Msa0481310:intron 40.0%
GCCTGATTGACACAGTAAAT+GGG - chr3_3:87136454-87136473 None:intergenic 40.0%
AGACACACTTCAACACTAGT+GGG - chr3_3:87136540-87136559 None:intergenic 40.0%
TCCCACATGTTAGTACTACT+TGG + chr3_3:87136597-87136616 Msa0481310:intron 40.0%
TCACTTGCCTAATTCTACTG+TGG + chr3_3:87136660-87136679 Msa0481310:intron 40.0%
ATTATGCTGCTGAAAGTGAG+AGG + chr3_3:87136803-87136822 Msa0481310:CDS 40.0%
ACAGGTGAAGAAAATGAGAG+AGG + chr3_3:87137031-87137050 Msa0481310:intron 40.0%
! AGGAGTATGGGAAATTGAAC+AGG + chr3_3:87137051-87137070 Msa0481310:CDS 40.0%
GGAGTATGGGAAATTGAACA+GGG + chr3_3:87137052-87137071 Msa0481310:CDS 40.0%
TGAACTTCTGAATGAAGTGG+TGG + chr3_3:87137100-87137119 Msa0481310:CDS 40.0%
TTTGTGGTTCATCCAAGTCA+GGG - chr3_3:87137136-87137155 None:intergenic 40.0%
ATTTGTGGTTCATCCAAGTC+AGG - chr3_3:87137137-87137156 None:intergenic 40.0%
TGTAGCAAGTGCTCAATTTG+TGG - chr3_3:87137152-87137171 None:intergenic 40.0%
AAGTGCAGCCAATCTTCATT+TGG - chr3_3:87137203-87137222 None:intergenic 40.0%
!! TGCTTCTCCTTCCTAGTTTT+GGG + chr3_3:87137413-87137432 Msa0481310:CDS 40.0%
ATAGGTGACATATACCCAGT+TGG + chr3_3:87137648-87137667 Msa0481310:intron 40.0%
CATCAAATCTGCAACCAACT+GGG - chr3_3:87137665-87137684 None:intergenic 40.0%
TCATCAAATCTGCAACCAAC+TGG - chr3_3:87137666-87137685 None:intergenic 40.0%
TGAATCCATTGTCCACCATA+AGG + chr3_3:87137683-87137702 Msa0481310:CDS 40.0%
!! GATTACCTTATGGTGGACAA+TGG - chr3_3:87137691-87137710 None:intergenic 40.0%
!!! GTGTTGTTTTAAGGTGGCAA+AGG + chr3_3:87137996-87138015 Msa0481310:intron 40.0%
GAATAAGACTACTCTACCCT+CGG + chr3_3:87138020-87138039 Msa0481310:CDS 40.0%
TCAATGAGGGAGATGTAGTA+TGG - chr3_3:87138449-87138468 None:intergenic 40.0%
CTACATCTCCCTCATTGAAA+AGG + chr3_3:87138451-87138470 Msa0481310:CDS 40.0%
! GGTGCTTACCTTTTCAATGA+GGG - chr3_3:87138462-87138481 None:intergenic 40.0%
! AGGTGCTTACCTTTTCAATG+AGG - chr3_3:87138463-87138482 None:intergenic 40.0%
AAGCTGAAGTGGTGAAACAT+TGG + chr3_3:87138610-87138629 Msa0481310:exon 40.0%
TGATGTTGAGTCAAAGACGG+TGG + chr3_3:87135706-87135725 Msa0481310:CDS 45.0%
ATGCCACAAGCCAACTCATT+TGG + chr3_3:87135770-87135789 Msa0481310:CDS 45.0%
!! TGACCAAATGAGTTGGCTTG+TGG - chr3_3:87135776-87135795 None:intergenic 45.0%
GGCCTGATTGACACAGTAAA+TGG - chr3_3:87136455-87136474 None:intergenic 45.0%
GCTCTATGATTCTTTAGGCC+AGG + chr3_3:87136486-87136505 Msa0481310:intron 45.0%
TGGGGTCCTAATAGAGGAAA+AGG - chr3_3:87136521-87136540 None:intergenic 45.0%
GACACACTTCAACACTAGTG+GGG - chr3_3:87136539-87136558 None:intergenic 45.0%
GAGACACACTTCAACACTAG+TGG - chr3_3:87136541-87136560 None:intergenic 45.0%
ACAGGGTAGAGATGAGCATA+TGG + chr3_3:87137069-87137088 Msa0481310:CDS 45.0%
CAGGGTAGAGATGAGCATAT+GGG + chr3_3:87137070-87137089 Msa0481310:CDS 45.0%
! GAAGATTGGCTGCACTTAAC+TGG + chr3_3:87137206-87137225 Msa0481310:CDS 45.0%
!! CACTTAACTGGCCTTATCCA+TGG + chr3_3:87137218-87137237 Msa0481310:CDS 45.0%
! GTGCTTCTCCTTCCTAGTTT+TGG + chr3_3:87137412-87137431 Msa0481310:CDS 45.0%
!!! GCTTCTCCTTCCTAGTTTTG+GGG + chr3_3:87137414-87137433 Msa0481310:CDS 45.0%
!!! CTTCTCCTTCCTAGTTTTGG+GGG + chr3_3:87137415-87137434 Msa0481310:CDS 45.0%
!! TTTTGGGGGACTTCCTCAAT+GGG + chr3_3:87137429-87137448 Msa0481310:CDS 45.0%
TTACCTACAACAGCCCATTG+AGG - chr3_3:87137445-87137464 None:intergenic 45.0%
ATGATGAACATAGCAGCCGA+GGG - chr3_3:87138039-87138058 None:intergenic 45.0%
TATGATGAACATAGCAGCCG+AGG - chr3_3:87138040-87138059 None:intergenic 45.0%
TTCACCACTTCAGCTTTGCA+GGG - chr3_3:87138606-87138625 None:intergenic 45.0%
TTTCACCACTTCAGCTTTGC+AGG - chr3_3:87138607-87138626 None:intergenic 45.0%
GAAACATTGGAGCCTTGAAG+TGG + chr3_3:87138623-87138642 Msa0481310:exon 45.0%
!! AAATAGTAATAAAATTATTA+AGG + chr3_3:87134791-87134810 Msa0481310:five_prime_UTR 5.0%
!! TATTATTATAAAATTATTAC+AGG + chr3_3:87135680-87135699 Msa0481310:intron 5.0%
ATTCTCAGGGAAGGACTCTC+CGG + chr3_3:87134919-87134938 Msa0481310:five_prime_UTR 50.0%
AGATATGAAGGGGTGGCTGT+TGG - chr3_3:87134966-87134985 None:intergenic 50.0%
GAGACAGAACTGGAGTTGGA+TGG + chr3_3:87135737-87135756 Msa0481310:CDS 50.0%
ACAGAACTGGAGTTGGATGG+TGG + chr3_3:87135740-87135759 Msa0481310:CDS 50.0%
CACTAGTGGGGTCCTAATAG+AGG - chr3_3:87136527-87136546 None:intergenic 50.0%
GCTGAAAGTGAGAGGCAAGA+AGG + chr3_3:87136811-87136830 Msa0481310:CDS 50.0%
AAGTGAGAGGCAAGAAGGAG+TGG + chr3_3:87136816-87136835 Msa0481310:CDS 50.0%
GAAGTCCCCCAAAACTAGGA+AGG - chr3_3:87137423-87137442 None:intergenic 50.0%
TGAGGAAGTCCCCCAAAACT+AGG - chr3_3:87137427-87137446 None:intergenic 50.0%
!!! GTTTTGGGGGACTTCCTCAA+TGG + chr3_3:87137428-87137447 Msa0481310:CDS 50.0%
!! CTTCCTCAATGGGCTGTTGT+AGG + chr3_3:87137439-87137458 Msa0481310:CDS 50.0%
ACTTCCCTGCAAAGCTGAAG+TGG + chr3_3:87138599-87138618 Msa0481310:CDS 50.0%
AGGAAAAGGCTCAATGGGCC+TGG - chr3_3:87136507-87136526 None:intergenic 55.0%
GGATGAGAGTGACCCTGACT+TGG + chr3_3:87137121-87137140 Msa0481310:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 87134665 87138709 87134665 ID=Msa0481310;Name=Msa0481310
chr3_3 mRNA 87134665 87138709 87134665 ID=Msa0481310-mRNA-1;Parent=Msa0481310;Name=Msa0481310-mRNA-1;_AED=0.18;_eAED=0.18;_QI=375|1|1|1|1|1|11|85|305
chr3_3 exon 87134665 87135073 87134665 ID=Msa0481310-mRNA-1:exon:25271;Parent=Msa0481310-mRNA-1
chr3_3 exon 87135702 87135804 87135702 ID=Msa0481310-mRNA-1:exon:25272;Parent=Msa0481310-mRNA-1
chr3_3 exon 87136801 87136882 87136801 ID=Msa0481310-mRNA-1:exon:25273;Parent=Msa0481310-mRNA-1
chr3_3 exon 87137035 87137239 87137035 ID=Msa0481310-mRNA-1:exon:25274;Parent=Msa0481310-mRNA-1
chr3_3 exon 87137401 87137460 87137401 ID=Msa0481310-mRNA-1:exon:25275;Parent=Msa0481310-mRNA-1
chr3_3 exon 87137652 87137704 87137652 ID=Msa0481310-mRNA-1:exon:25276;Parent=Msa0481310-mRNA-1
chr3_3 exon 87137802 87137924 87137802 ID=Msa0481310-mRNA-1:exon:25277;Parent=Msa0481310-mRNA-1
chr3_3 exon 87138009 87138078 87138009 ID=Msa0481310-mRNA-1:exon:25278;Parent=Msa0481310-mRNA-1
chr3_3 exon 87138197 87138275 87138197 ID=Msa0481310-mRNA-1:exon:25279;Parent=Msa0481310-mRNA-1
chr3_3 exon 87138391 87138472 87138391 ID=Msa0481310-mRNA-1:exon:25280;Parent=Msa0481310-mRNA-1
chr3_3 exon 87138598 87138709 87138598 ID=Msa0481310-mRNA-1:exon:25281;Parent=Msa0481310-mRNA-1
chr3_3 five_prime_UTR 87134665 87135039 87134665 ID=Msa0481310-mRNA-1:five_prime_utr;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87135040 87135073 87135040 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87135702 87135804 87135702 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87136801 87136882 87136801 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87137035 87137239 87137035 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87137401 87137460 87137401 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87137652 87137704 87137652 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87137802 87137924 87137802 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87138009 87138078 87138009 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87138197 87138275 87138197 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87138391 87138472 87138391 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 CDS 87138598 87138624 87138598 ID=Msa0481310-mRNA-1:cds;Parent=Msa0481310-mRNA-1
chr3_3 three_prime_UTR 87138625 87138709 87138625 ID=Msa0481310-mRNA-1:three_prime_utr;Parent=Msa0481310-mRNA-1
Gene Sequence

>Msa0481310

ATGACTATCCTCATTGATCAACCTGATTATTTTGGATCTGATGTTGAGTCAAAGACGGTGGTTGTTAATGAGACAGAACTGGAGTTGGATGGTGGATTTGTTATGCCACAAGCCAACTCATTTGGTCACACTTTTAGGGATTATGCTGCTGAAAGTGAGAGGCAAGAAGGAGTGGAGAACTTCTACAAAAAAAACCACATTTACCAATCCTTTGATTTTGTGAAGAAAATGAGAGAGGAGTATGGGAAATTGAACAGGGTAGAGATGAGCATATGGGAATGTTGTGAACTTCTGAATGAAGTGGTGGATGAGAGTGACCCTGACTTGGATGAACCACAAATTGAGCACTTGCTACAAACAGCTGAAGCTATAAGAAAGGACTATCCAAATGAAGATTGGCTGCACTTAACTGGCCTTATCCATGATCTTGGCAAAGTGCTTCTCCTTCCTAGTTTTGGGGGACTTCCTCAATGGGCTGTTGTAGGTGACATATACCCAGTTGGTTGCAGATTTGATGAATCCATTGTCCACCATAAGTATTTTAAGGAAAATCCAGACTATAACAACTCTGCATACAACACTAGATATGGAATTTACTCTGAGAAATGTGGACTTAACAATGTCATGATGTCATGGGGACATGATGACTACATGTATCTAGTGGCAAAGGAGAATAAGACTACTCTACCCTCGGCTGCTATGTTCATCATAAGATACCATTCATTTTATGCTTTACATAGGGAAGGAGCTTATAAACACTTGATGAATGATGAGGATGTTGAGAACTTGAAATGGCTTCACATTTTCAACAAATATGATCTCTACAGCAAGAGCAAAGTGAGAGTTGATGTTGAAAAGGTGAAACCATACTACATCTCCCTCATTGAAAAGTACTTCCCTGCAAAGCTGAAGTGGTGA

Protein sequence

>Msa0481310

MTILIDQPDYFGSDVESKTVVVNETELELDGGFVMPQANSFGHTFRDYAAESERQEGVENFYKKNHIYQSFDFVKKMREEYGKLNRVEMSIWECCELLNEVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLLPSFGGLPQWAVVGDIYPVGCRFDESIVHHKYFKENPDYNNSAYNTRYGIYSEKCGLNNVMMSWGHDDYMYLVAKENKTTLPSAAMFIIRYHSFYALHREGAYKHLMNDEDVENLKWLHIFNKYDLYSKSKVRVDVEKVKPYYISLIEKYFPAKLKW*