AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1312770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1312770 MtrunA17_Chr8g0341281 98.033 305 6 0 1 305 1 305 0.0 626
Msa1312770 MtrunA17_Chr8g0389591 72.871 317 73 3 1 305 1 316 2.20e-172 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1312770 AT1G14520.2 76.699 309 68 2 1 305 1 309 4.92e-178 494
Msa1312770 AT1G14520.4 75.962 312 67 2 1 305 1 311 6.94e-177 491
Msa1312770 AT1G14520.1 75.962 312 67 2 1 305 1 311 6.94e-177 491
Msa1312770 AT1G14520.3 75.658 304 66 2 1 297 1 303 2.08e-169 473
Msa1312770 AT4G26260.2 71.384 318 78 1 1 305 1 318 4.87e-169 471
Msa1312770 AT4G26260.1 71.698 318 76 2 1 305 1 317 6.25e-169 471
Msa1312770 AT2G19800.1 71.562 320 73 5 1 305 1 317 7.20e-169 471
Msa1312770 AT5G56640.1 75.090 277 68 1 30 305 38 314 8.79e-161 451
Msa1312770 AT5G56640.2 75.090 277 68 1 30 305 8 284 1.42e-160 449

Find 93 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATCAACCTGATTATTT+TGG 0.171522 8_4:-10065935 Msa1312770:intron
GTGCTTCTCCTTCCTAGTTT+TGG 0.177602 8_4:-10063724 Msa1312770:CDS
CTTTGTTTCTTCCCATCTTT+AGG 0.222674 8_4:+10066137 None:intergenic
TTTCACCACTTCAGCTTTGC+AGG 0.279549 8_4:+10062532 None:intergenic
AAGAAAATGAGAGAGGAGTA+TGG 0.295141 8_4:-10064084 Msa1312770:CDS
CTTGAGAAGTTTCAATTCTC+AGG 0.300025 8_4:-10066082 Msa1312770:five_prime_UTR
GGAGTGATGCTATTTATAAT+TGG 0.334034 8_4:+10066045 None:intergenic
AAATAGTAATAAAATTATTA+AGG 0.337939 8_4:-10066196 Msa1312770:five_prime_UTR
GAAGATTGGCTGCACTTAAC+TGG 0.338706 8_4:-10063916 Msa1312770:CDS
AGGAGTATGGGAAATTGAAC+AGG 0.341571 8_4:-10064071 Msa1312770:CDS
CTAAATATTTGTCCACTTCA+AGG 0.343404 8_4:+10062501 None:intergenic
TTGGAGATTGTCAACTTGTT+TGG 0.358320 8_4:-10066304 Msa1312770:five_prime_UTR
TCTGCATACAACACTAGATA+TGG 0.369151 8_4:-10063304 Msa1312770:CDS
TCATCAAATCTGCAACCAAC+TGG 0.370493 8_4:+10063473 None:intergenic
TAGCTTCAGCTGTTTGTAGA+AGG 0.371351 8_4:+10063959 None:intergenic
TCAATGAGGGAGATGTAGTA+TGG 0.376465 8_4:+10062690 None:intergenic
TATGCAGAGTTGTTATAGTC+TGG 0.382673 8_4:+10063319 None:intergenic
ATGCCACAAGCCAACTCATT+TGG 0.388090 8_4:-10065216 Msa1312770:CDS
AGTTTAGTTTATGAAGTAAA+GGG 0.401538 8_4:-10062480 Msa1312770:three_prime_UTR
TTATGGGACTCTTGTCCTGT+TGG 0.417043 8_4:-10066323 Msa1312770:five_prime_UTR
AAACATGTTTGTCCTAAAGA+TGG 0.421851 8_4:-10066149 Msa1312770:five_prime_UTR
ATTTGTGGTTCATCCAAGTC+AGG 0.423334 8_4:+10063988 None:intergenic
AAGTGCAGCCAATCTTCATT+TGG 0.432228 8_4:+10063922 None:intergenic
CTTCCTCAATGGGCTGTTGT+AGG 0.437391 8_4:-10063697 Msa1312770:intron
ATGAGGAAATTGAGATATGA+AGG 0.443762 8_4:+10066012 None:intergenic
TAGTTTAGTTTATGAAGTAA+AGG 0.457832 8_4:-10062481 Msa1312770:three_prime_UTR
ACAGGGTAGAGATGAGCATA+TGG 0.463184 8_4:-10064053 Msa1312770:CDS
TTAAAACGTATACGATTGCT+TGG 0.465459 8_4:-10066223 Msa1312770:five_prime_UTR
GAGATTAAGTACCATGGATA+AGG 0.469407 8_4:+10063893 None:intergenic
ATTCTCAGGGAAGGACTCTC+CGG 0.478200 8_4:-10066068 Msa1312770:five_prime_UTR
TGTAGAAGGTGCTCAATTTG+TGG 0.482816 8_4:+10063973 None:intergenic
AGGACTATCCAAATGAAGAT+TGG 0.484923 8_4:-10063930 Msa1312770:CDS
CTACATCTCCCTCATTGAAA+AGG 0.497519 8_4:-10062685 Msa1312770:intron
AGGATGTTGAGAACTTGAAA+TGG 0.504789 8_4:-10062897 Msa1312770:CDS
TGATGCTATTTATAATTGGC+CGG 0.510215 8_4:+10066049 None:intergenic
ATTAAGTTGTGCAAGTACCT+TGG 0.510460 8_4:-10062449 Msa1312770:three_prime_UTR
CACTTAACTGGCCTTATCCA+TGG 0.511389 8_4:-10063904 Msa1312770:intron
ACAAGTTGACAATCTCCAAC+AGG 0.513933 8_4:+10066308 None:intergenic
AGATATGAAGGGGTGGCTGT+TGG 0.514277 8_4:+10066024 None:intergenic
TGAACTTACCATAAAATGAA+TGG 0.516608 8_4:+10063071 None:intergenic
GGTTGTTAATGAGACAGAAC+TGG 0.517238 8_4:-10065259 Msa1312770:CDS
AACAGCTGAAGCTATAAGAA+AGG 0.518742 8_4:-10063950 Msa1312770:CDS
TGCTTACAAAATCAAAGGAT+TGG 0.521858 8_4:+10064255 None:intergenic
GAAGTTTCAATTCTCAGGGA+AGG 0.532870 8_4:-10066077 Msa1312770:five_prime_UTR
AGAAAATGAGAGAGGAGTAT+GGG 0.536046 8_4:-10064083 Msa1312770:CDS
ACTTCCCTGCAAAGCTGAAG+TGG 0.537264 8_4:-10062537 Msa1312770:CDS
AGTGAGAGTTGATGTTGAAA+AGG 0.538804 8_4:-10062718 Msa1312770:CDS
AACATGTTTGTCCTAAAGAT+GGG 0.539611 8_4:-10066148 Msa1312770:five_prime_UTR
GCTGAAAGTGAGAGGCAAGA+AGG 0.539626 8_4:-10064311 Msa1312770:CDS
AATGAGGATAGTCATGTTGA+GGG 0.546349 8_4:+10065955 None:intergenic
TTAACAATGTCATGATGTCA+TGG 0.550047 8_4:-10063258 Msa1312770:CDS
AAGTGAGAGGCAAGAAGGAG+TGG 0.553115 8_4:-10064306 Msa1312770:CDS
GGATGAGAGTGACCCTGACT+TGG 0.554579 8_4:-10064001 Msa1312770:CDS
TAATGAGACAGAACTGGAGT+TGG 0.556666 8_4:-10065253 Msa1312770:CDS
AATCAAAGGATTGGTAAATG+TGG 0.558930 8_4:+10064264 None:intergenic
TTGAGAAGTTTCAATTCTCA+GGG 0.563321 8_4:-10066081 Msa1312770:five_prime_UTR
TTTGTAGCTTTACATAGGGA+AGG 0.563583 8_4:-10062946 Msa1312770:intron
ACAGGTGAAGAAAATGAGAG+AGG 0.565209 8_4:-10064091 Msa1312770:intron
GATTACCTTGTGGTGGACAA+TGG 0.568396 8_4:+10063448 None:intergenic
TAACAATGTCATGATGTCAT+GGG 0.569057 8_4:-10063257 Msa1312770:CDS
ATGAAAGAGAATAAGAAATG+AGG 0.569242 8_4:+10065995 None:intergenic
GTAGATGCTTACAAAATCAA+AGG 0.571608 8_4:+10064250 None:intergenic
AAGCTGAAGTGGTGAAACAT+TGG 0.577752 8_4:-10062526 Msa1312770:exon
CATCAAATCTGCAACCAACT+GGG 0.577918 8_4:+10063474 None:intergenic
CAGGGTAGAGATGAGCATAT+GGG 0.584187 8_4:-10064052 Msa1312770:CDS
TGAGGAAATTGAGATATGAA+GGG 0.596359 8_4:+10066013 None:intergenic
GGAATTTACTCTGAGAAATG+TGG 0.598713 8_4:-10063283 Msa1312770:CDS
TTCACCACTTCAGCTTTGCA+GGG 0.603653 8_4:+10062533 None:intergenic
GAATAAGACTACTCTACCCT+CGG 0.603870 8_4:-10063116 Msa1312770:CDS
AATAATCAGGTTGATCAATG+AGG 0.611524 8_4:+10065939 None:intergenic
TATGATGAACATAGCAGCCG+AGG 0.612512 8_4:+10063099 None:intergenic
CAATGAGGATAGTCATGTTG+AGG 0.615613 8_4:+10065954 None:intergenic
TTTGTGGTTCATCCAAGTCA+GGG 0.617345 8_4:+10063989 None:intergenic
AAAAGTGTGACCAAATGAGT+TGG 0.621220 8_4:+10065206 None:intergenic
GTTGAATGATTACCTTGTGG+TGG 0.621848 8_4:+10063441 None:intergenic
ATCTGATGTTGAGTCAAAGA+CGG 0.628431 8_4:-10065283 Msa1312770:CDS
GGAGTATGGGAAATTGAACA+GGG 0.629264 8_4:-10064070 Msa1312770:CDS
ATTATGCTGCTGAAAGTGAG+AGG 0.640938 8_4:-10064319 Msa1312770:CDS
GAAACATTGGAGCCTTGAAG+TGG 0.644241 8_4:-10062513 Msa1312770:three_prime_UTR
TGAACTTCTGAATGAAGTGG+TGG 0.645478 8_4:-10064022 Msa1312770:CDS
GAGGAAATTGAGATATGAAG+GGG 0.650499 8_4:+10066014 None:intergenic
TAAACACTTGATGAATGATG+AGG 0.651355 8_4:-10062917 Msa1312770:CDS
AACAATGTCATGATGTCATG+GGG 0.651705 8_4:-10063256 Msa1312770:CDS
ATAGGTGACATATACCCAGT+TGG 0.653485 8_4:-10063488 Msa1312770:intron
TGAATCCATTGTCCACCACA+AGG 0.657684 8_4:-10063453 Msa1312770:intron
ACAGAACTGGAGTTGGATGG+TGG 0.659727 8_4:-10065246 Msa1312770:CDS
TGACCAAATGAGTTGGCTTG+TGG 0.660149 8_4:+10065213 None:intergenic
TTGTGAACTTCTGAATGAAG+TGG 0.665499 8_4:-10064025 Msa1312770:CDS
GAGACAGAACTGGAGTTGGA+TGG 0.674706 8_4:-10065249 Msa1312770:CDS
ATGATGAACATAGCAGCCGA+GGG 0.676043 8_4:+10063100 None:intergenic
GAAATTGAGATATGAAGGGG+TGG 0.683739 8_4:+10066017 None:intergenic
TTACCTACAACAGCCCATTG+AGG 0.688120 8_4:+10063694 None:intergenic
TGATGTTGAGTCAAAGACGG+TGG 0.761342 8_4:-10065280 Msa1312770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAGAAAAACTTTTTATTT+TGG - chr8_4:10062503-10062522 Msa1312770:three_prime_UTR 10.0%
!!! TTTGTTTTCTATTAATTAAT+TGG - chr8_4:10063440-10063459 Msa1312770:intron 10.0%
!! TAAATAAATTCAGATAAAAT+TGG - chr8_4:10063787-10063806 Msa1312770:intron 10.0%
!! TTACATTTATATAATATTAG+CGG - chr8_4:10065108-10065127 Msa1312770:intron 10.0%
!! ACAAAGAAAAATTTAATGTT+AGG - chr8_4:10062651-10062670 Msa1312770:intron 15.0%
!! TAAAAATTACCAAAATAATC+AGG + chr8_4:10062848-10062867 None:intergenic 15.0%
!!! TTTTGCTAAAAATAAAGAAA+GGG + chr8_4:10062872-10062891 None:intergenic 15.0%
!!! ATTTTGCTAAAAATAAAGAA+AGG + chr8_4:10062873-10062892 None:intergenic 15.0%
!! AATCAGATCTATAAAAAAAT+TGG - chr8_4:10063350-10063369 Msa1312770:intron 15.0%
!! ATCAGATCTATAAAAAAATT+GGG - chr8_4:10063351-10063370 Msa1312770:intron 15.0%
!! ACAAGTTAAAAAGTTAATTA+AGG - chr8_4:10063847-10063866 Msa1312770:intron 15.0%
!!! TTTCATCCATATTTTTTAAA+CGG + chr8_4:10064003-10064022 None:intergenic 15.0%
!!! TTAGAGAATATATTCATTTT+TGG + chr8_4:10064352-10064371 None:intergenic 15.0%
!! AAAAATAAATGAAAGATTTG+TGG + chr8_4:10064546-10064565 None:intergenic 15.0%
!!! TGAAGAAAGTTTTAAAAATT+TGG - chr8_4:10065608-10065627 Msa1312770:intron 15.0%
!!! GAAGAAAGTTTTAAAAATTT+GGG - chr8_4:10065609-10065628 Msa1312770:intron 15.0%
!!! GAACTTTTAATGTTAATTTT+TGG + chr8_4:10065750-10065769 None:intergenic 15.0%
!!! TCACAAATTTCATTTGTTTT+TGG - chr8_4:10062911-10062930 Msa1312770:CDS 20.0%
!!! AAAAATGAAATTTTCTGAGA+GGG + chr8_4:10062989-10063008 None:intergenic 20.0%
!!! AAAAAATGAAATTTTCTGAG+AGG + chr8_4:10062990-10063009 None:intergenic 20.0%
!!! TTTATTTTTGATTTTGCCAT+AGG + chr8_4:10063039-10063058 None:intergenic 20.0%
!! AAATTAAAATGTGAATCGTA+CGG + chr8_4:10063238-10063257 None:intergenic 20.0%
!! GAATACTTGATTTATGAAAT+TGG - chr8_4:10063268-10063287 Msa1312770:CDS 20.0%
!!! TTGAAACTTTTTTTGACAAA+AGG - chr8_4:10063379-10063398 Msa1312770:intron 20.0%
!!! GAACTTTTTTATATCGAATT+TGG - chr8_4:10063720-10063739 Msa1312770:CDS 20.0%
!!! TTTTTTATATCGAATTTGGA+TGG - chr8_4:10063724-10063743 Msa1312770:CDS 20.0%
!!! AGATAATATGGTGTTTTTTT+TGG - chr8_4:10063755-10063774 Msa1312770:intron 20.0%
!! ACATTTCCGTTTAAAAAATA+TGG - chr8_4:10063994-10064013 Msa1312770:CDS 20.0%
!! ATGAACATTATAACATATAC+AGG - chr8_4:10064662-10064681 Msa1312770:intron 20.0%
!! AATTGGTTATTAAACCAAAA+GGG + chr8_4:10065003-10065022 None:intergenic 20.0%
!! AAATTGGTTATTAAACCAAA+AGG + chr8_4:10065004-10065023 None:intergenic 20.0%
!! ATATAATATTAGCGGAAAAA+CGG - chr8_4:10065116-10065135 Msa1312770:intron 20.0%
!!! ACGCTTTTATATTGATATAT+CGG + chr8_4:10065153-10065172 None:intergenic 20.0%
!!! CATTCAACTTATTTTCTATT+TGG - chr8_4:10065345-10065364 Msa1312770:intron 20.0%
!! CATGTAGAAAAAACAAATTA+TGG - chr8_4:10065375-10065394 Msa1312770:intron 20.0%
!! TTGGAAATGTAACATATATT+AGG + chr8_4:10065411-10065430 None:intergenic 20.0%
!!! ACATTGAATTGAATTTTGAA+AGG + chr8_4:10065569-10065588 None:intergenic 20.0%
!!! ATAAGATACCATTCATTTTA+TGG - chr8_4:10065692-10065711 Msa1312770:intron 20.0%
!!! AATTGATCATTTGATTTGAT+TGG + chr8_4:10065777-10065796 None:intergenic 20.0%
!!! TTTTTTTCAGCTAGAAAAAA+AGG + chr8_4:10066138-10066157 None:intergenic 20.0%
!! AGTAAAAACTTAATAACTCT+AGG + chr8_4:10066191-10066210 None:intergenic 20.0%
!!! TAGTTTAGTTTATGAAGTAA+AGG - chr8_4:10066290-10066309 Msa1312770:five_prime_UTR 20.0%
!!! AGTTTAGTTTATGAAGTAAA+GGG - chr8_4:10066291-10066310 Msa1312770:five_prime_UTR 20.0%
! ATGAAAGAGAATAAGAAATG+AGG + chr8_4:10062779-10062798 None:intergenic 25.0%
!! ATTGATCAACCTGATTATTT+TGG - chr8_4:10062836-10062855 Msa1312770:intron 25.0%
! AACAAATGAAATTTGTGAGA+GGG + chr8_4:10062909-10062928 None:intergenic 25.0%
! AAACAAATGAAATTTGTGAG+AGG + chr8_4:10062910-10062929 None:intergenic 25.0%
!!! AAAATGAAATTTTCTGAGAG+GGG + chr8_4:10062988-10063007 None:intergenic 25.0%
!!! ATGTTTTTTTTTTGCTCCTA+TGG - chr8_4:10063020-10063039 Msa1312770:intron 25.0%
!!! TGTGCATAATCTGTATTTTT+TGG - chr8_4:10063151-10063170 Msa1312770:intron 25.0%
! ATATGAGATTGTGAATTTGT+TGG - chr8_4:10063196-10063215 Msa1312770:intron 25.0%
!! TATGAGATTGTGAATTTGTT+GGG - chr8_4:10063197-10063216 Msa1312770:intron 25.0%
! AAAAAAGTTCTTATCCAGAT+CGG + chr8_4:10063710-10063729 None:intergenic 25.0%
! ATGGATAGATCTAGATAATA+TGG - chr8_4:10063743-10063762 Msa1312770:intron 25.0%
!! TTATGCTAACTTGTACTTAA+AGG - chr8_4:10063823-10063842 Msa1312770:intron 25.0%
! AACTATCAATAGGGTTATAT+TGG + chr8_4:10064083-10064102 None:intergenic 25.0%
! ATCATAGAGCAAAAATAACA+GGG + chr8_4:10064261-10064280 None:intergenic 25.0%
! AATCATAGAGCAAAAATAAC+AGG + chr8_4:10064262-10064281 None:intergenic 25.0%
!! TTTTTGCTCTATGATTCTTT+AGG - chr8_4:10064266-10064285 Msa1312770:CDS 25.0%
!!! AAAGTCTTTTAACTAACATG+TGG + chr8_4:10064387-10064406 None:intergenic 25.0%
! AGCTATTGTTAATCATAATC+AGG - chr8_4:10064428-10064447 Msa1312770:intron 25.0%
! GCTATTGTTAATCATAATCA+GGG - chr8_4:10064429-10064448 Msa1312770:intron 25.0%
!!! TGTATGTACATTTTTTCAGA+AGG + chr8_4:10064569-10064588 None:intergenic 25.0%
! GCATACACTTAAAAATATGT+AGG - chr8_4:10064620-10064639 Msa1312770:intron 25.0%
! ATTGGTTATTAAACCAAAAG+GGG + chr8_4:10065002-10065021 None:intergenic 25.0%
!! TTTATATTGATATATCGGCT+CGG + chr8_4:10065148-10065167 None:intergenic 25.0%
!! TCTCTTACCATTTTCTATAT+TGG - chr8_4:10065259-10065278 Msa1312770:CDS 25.0%
!! ACCATTTTCTATATTGGTAT+AGG - chr8_4:10065265-10065284 Msa1312770:CDS 25.0%
! ACCTATACCAATATAGAAAA+TGG + chr8_4:10065269-10065288 None:intergenic 25.0%
!! TTTCCAATTCCAGTATTTTA+AGG - chr8_4:10065424-10065443 Msa1312770:intron 25.0%
! TTTCCTTAAAATACTGGAAT+TGG + chr8_4:10065430-10065449 None:intergenic 25.0%
!!! AAAATTTGGGTGTTGTTTTA+AGG - chr8_4:10065622-10065641 Msa1312770:intron 25.0%
! TGAACTTACCATAAAATGAA+TGG + chr8_4:10065703-10065722 None:intergenic 25.0%
!!! TTTGTTTTGTAGCTTTACAT+AGG - chr8_4:10065820-10065839 Msa1312770:intron 25.0%
!!! TTGTTTTGTAGCTTTACATA+GGG - chr8_4:10065821-10065840 Msa1312770:intron 25.0%
! CTAGCTGAAAAAAATTAACA+AGG - chr8_4:10066144-10066163 Msa1312770:five_prime_UTR 25.0%
TTAAAACGTATACGATTGCT+TGG - chr8_4:10062548-10062567 Msa1312770:intron 30.0%
AAACATGTTTGTCCTAAAGA+TGG - chr8_4:10062622-10062641 Msa1312770:intron 30.0%
AACATGTTTGTCCTAAAGAT+GGG - chr8_4:10062623-10062642 Msa1312770:intron 30.0%
! AATGTTAGGATTTTCAGAGA+AGG - chr8_4:10062665-10062684 Msa1312770:intron 30.0%
TTGAGAAGTTTCAATTCTCA+GGG - chr8_4:10062690-10062709 Msa1312770:CDS 30.0%
! TGATGCTATTTATAATTGGC+CGG + chr8_4:10062725-10062744 None:intergenic 30.0%
! GGAGTGATGCTATTTATAAT+TGG + chr8_4:10062729-10062748 None:intergenic 30.0%
TGAGGAAATTGAGATATGAA+GGG + chr8_4:10062761-10062780 None:intergenic 30.0%
ATGAGGAAATTGAGATATGA+AGG + chr8_4:10062762-10062781 None:intergenic 30.0%
!! AATAATCAGGTTGATCAATG+AGG + chr8_4:10062835-10062854 None:intergenic 30.0%
ACAAATGAAATTTGTGAGAG+GGG + chr8_4:10062908-10062927 None:intergenic 30.0%
AGTTACAATCAAAGGGAAAA+TGG + chr8_4:10063131-10063150 None:intergenic 30.0%
ATGCACAAGTTACAATCAAA+GGG + chr8_4:10063138-10063157 None:intergenic 30.0%
TATGCACAAGTTACAATCAA+AGG + chr8_4:10063139-10063158 None:intergenic 30.0%
!!! GTATTTTTTGGTCTCGATAA+TGG - chr8_4:10063163-10063182 Msa1312770:intron 30.0%
CAAGAATCACGAAATTAACT+GGG + chr8_4:10063330-10063349 None:intergenic 30.0%
TCAAGAATCACGAAATTAAC+TGG + chr8_4:10063331-10063350 None:intergenic 30.0%
!! GGGTTATATTGGTAATTTTG+TGG + chr8_4:10064072-10064091 None:intergenic 30.0%
TTAAAGTTAAAATCCATCGG+CGG + chr8_4:10064108-10064127 None:intergenic 30.0%
CGGTTAAAGTTAAAATCCAT+CGG + chr8_4:10064111-10064130 None:intergenic 30.0%
!!! CGATGGATTTTAACTTTAAC+CGG - chr8_4:10064109-10064128 Msa1312770:intron 30.0%
CAGTAGTTTCAATCGAATTT+GGG - chr8_4:10064132-10064151 Msa1312770:intron 30.0%
! AATCAAAGGATTGGTAAATG+TGG + chr8_4:10064510-10064529 None:intergenic 30.0%
TGCTTACAAAATCAAAGGAT+TGG + chr8_4:10064519-10064538 None:intergenic 30.0%
GTAGATGCTTACAAAATCAA+AGG + chr8_4:10064524-10064543 None:intergenic 30.0%
AAAGTAGAGATTAAGTACCA+TGG + chr8_4:10064887-10064906 None:intergenic 30.0%
!!! ATTTTTTTTCCTTCCCCTTT+TGG - chr8_4:10064986-10065005 Msa1312770:intron 30.0%
!! AGATCTGCATTGATTCAAAT+TGG + chr8_4:10065020-10065039 None:intergenic 30.0%
ATTTGAATCAATGCAGATCT+TGG - chr8_4:10065020-10065039 Msa1312770:intron 30.0%
! TAAGTTGAATGATTACCTTG+TGG + chr8_4:10065336-10065355 None:intergenic 30.0%
! CTGGATTTTCCTTAAAATAC+TGG + chr8_4:10065436-10065455 None:intergenic 30.0%
TTAACAATGTCATGATGTCA+TGG - chr8_4:10065513-10065532 Msa1312770:intron 30.0%
TAACAATGTCATGATGTCAT+GGG - chr8_4:10065514-10065533 Msa1312770:intron 30.0%
TAAACACTTGATGAATGATG+AGG - chr8_4:10065854-10065873 Msa1312770:intron 30.0%
AGGAAATAAAAGCTTTCTTG+AGG + chr8_4:10066118-10066137 None:intergenic 30.0%
ATAACTCTAGGCAAAAACTA+GGG + chr8_4:10066179-10066198 None:intergenic 30.0%
AATAACTCTAGGCAAAAACT+AGG + chr8_4:10066180-10066199 None:intergenic 30.0%
CTAAATATTTGTCCACTTCA+AGG + chr8_4:10066273-10066292 None:intergenic 30.0%
! TTGGAGATTGTCAACTTGTT+TGG - chr8_4:10062467-10062486 Msa1312770:three_prime_UTR 35.0%
! CTTTGTTTCTTCCCATCTTT+AGG + chr8_4:10062637-10062656 None:intergenic 35.0%
CTTGAGAAGTTTCAATTCTC+AGG - chr8_4:10062689-10062708 Msa1312770:CDS 35.0%
GAGGAAATTGAGATATGAAG+GGG + chr8_4:10062760-10062779 None:intergenic 35.0%
AATGAGGATAGTCATGTTGA+GGG + chr8_4:10062819-10062838 None:intergenic 35.0%
ATCTGATGTTGAGTCAAAGA+CGG - chr8_4:10063488-10063507 Msa1312770:intron 35.0%
! AAAAGTGTGACCAAATGAGT+TGG + chr8_4:10063568-10063587 None:intergenic 35.0%
! ACTCATTTGGTCACACTTTT+AGG - chr8_4:10063568-10063587 Msa1312770:intron 35.0%
CCAGATCGGTATATTCAAAT+GGG + chr8_4:10063696-10063715 None:intergenic 35.0%
TCCAGATCGGTATATTCAAA+TGG + chr8_4:10063697-10063716 None:intergenic 35.0%
AATTCGATTGAAACTACTGC+CGG + chr8_4:10064131-10064150 None:intergenic 35.0%
GCAGTAGTTTCAATCGAATT+TGG - chr8_4:10064131-10064150 Msa1312770:intron 35.0%
AATAGAGGAAAAGGCTCAAT+GGG + chr8_4:10064297-10064316 None:intergenic 35.0%
TAATAGAGGAAAAGGCTCAA+TGG + chr8_4:10064298-10064317 None:intergenic 35.0%
! ATTGAGCCTTTTCCTCTATT+AGG - chr8_4:10064297-10064316 Msa1312770:CDS 35.0%
AAGAAAATGAGAGAGGAGTA+TGG - chr8_4:10064687-10064706 Msa1312770:intron 35.0%
! AGAAAATGAGAGAGGAGTAT+GGG - chr8_4:10064688-10064707 Msa1312770:intron 35.0%
TTGTGAACTTCTGAATGAAG+TGG - chr8_4:10064746-10064765 Msa1312770:intron 35.0%
AACAGCTGAAGCTATAAGAA+AGG - chr8_4:10064821-10064840 Msa1312770:intron 35.0%
AGGACTATCCAAATGAAGAT+TGG - chr8_4:10064841-10064860 Msa1312770:intron 35.0%
GAGATTAAGTACCATGGATA+AGG + chr8_4:10064881-10064900 None:intergenic 35.0%
GTTATTAAACCAAAAGGGGA+AGG + chr8_4:10064998-10065017 None:intergenic 35.0%
TATGCAGAGTTGTTATAGTC+TGG + chr8_4:10065455-10065474 None:intergenic 35.0%
TCTGCATACAACACTAGATA+TGG - chr8_4:10065467-10065486 Msa1312770:intron 35.0%
! GGAATTTACTCTGAGAAATG+TGG - chr8_4:10065488-10065507 Msa1312770:intron 35.0%
AACAATGTCATGATGTCATG+GGG - chr8_4:10065515-10065534 Msa1312770:intron 35.0%
!!! ATTTGGGTGTTGTTTTAAGG+TGG - chr8_4:10065625-10065644 Msa1312770:intron 35.0%
! TTTGTAGCTTTACATAGGGA+AGG - chr8_4:10065825-10065844 Msa1312770:intron 35.0%
AGGATGTTGAGAACTTGAAA+TGG - chr8_4:10065874-10065893 Msa1312770:intron 35.0%
!! AGTGAGAGTTGATGTTGAAA+AGG - chr8_4:10066053-10066072 Msa1312770:five_prime_UTR 35.0%
TAACTCTAGGCAAAAACTAG+GGG + chr8_4:10066178-10066197 None:intergenic 35.0%
! ACAAGTTGACAATCTCCAAC+AGG + chr8_4:10062466-10062485 None:intergenic 40.0%
GAAGTTTCAATTCTCAGGGA+AGG - chr8_4:10062694-10062713 Msa1312770:CDS 40.0%
GAAATTGAGATATGAAGGGG+TGG + chr8_4:10062757-10062776 None:intergenic 40.0%
CAATGAGGATAGTCATGTTG+AGG + chr8_4:10062820-10062839 None:intergenic 40.0%
GGTTGTTAATGAGACAGAAC+TGG - chr8_4:10063512-10063531 Msa1312770:intron 40.0%
TAATGAGACAGAACTGGAGT+TGG - chr8_4:10063518-10063537 Msa1312770:intron 40.0%
CCCATTTGAATATACCGATC+TGG - chr8_4:10063693-10063712 Msa1312770:intron 40.0%
TCGGCGGTTAACTATCAATA+GGG + chr8_4:10064092-10064111 None:intergenic 40.0%
ATCGGCGGTTAACTATCAAT+AGG + chr8_4:10064093-10064112 None:intergenic 40.0%
! TATTGATAGTTAACCGCCGA+TGG - chr8_4:10064092-10064111 Msa1312770:intron 40.0%
TGATTGACACAGTAAATGGG+AGG + chr8_4:10064236-10064255 None:intergenic 40.0%
TCCCATTTACTGTGTCAATC+AGG - chr8_4:10064235-10064254 Msa1312770:intron 40.0%
GCCTGATTGACACAGTAAAT+GGG + chr8_4:10064239-10064258 None:intergenic 40.0%
AGACACACTTCAACACTAGT+GGG + chr8_4:10064325-10064344 None:intergenic 40.0%
ATTATGCTGCTGAAAGTGAG+AGG - chr8_4:10064452-10064471 Msa1312770:intron 40.0%
ACAGGTGAAGAAAATGAGAG+AGG - chr8_4:10064680-10064699 Msa1312770:intron 40.0%
! AGGAGTATGGGAAATTGAAC+AGG - chr8_4:10064700-10064719 Msa1312770:intron 40.0%
GGAGTATGGGAAATTGAACA+GGG - chr8_4:10064701-10064720 Msa1312770:intron 40.0%
TGAACTTCTGAATGAAGTGG+TGG - chr8_4:10064749-10064768 Msa1312770:intron 40.0%
TTTGTGGTTCATCCAAGTCA+GGG + chr8_4:10064785-10064804 None:intergenic 40.0%
ATTTGTGGTTCATCCAAGTC+AGG + chr8_4:10064786-10064805 None:intergenic 40.0%
!! TGTAGAAGGTGCTCAATTTG+TGG + chr8_4:10064801-10064820 None:intergenic 40.0%
TAGCTTCAGCTGTTTGTAGA+AGG + chr8_4:10064815-10064834 None:intergenic 40.0%
AAGTGCAGCCAATCTTCATT+TGG + chr8_4:10064852-10064871 None:intergenic 40.0%
!! TGCTTCTCCTTCCTAGTTTT+GGG - chr8_4:10065048-10065067 Msa1312770:intron 40.0%
ATAGGTGACATATACCCAGT+TGG - chr8_4:10065283-10065302 Msa1312770:CDS 40.0%
CATCAAATCTGCAACCAACT+GGG + chr8_4:10065300-10065319 None:intergenic 40.0%
TCATCAAATCTGCAACCAAC+TGG + chr8_4:10065301-10065320 None:intergenic 40.0%
GTTGAATGATTACCTTGTGG+TGG + chr8_4:10065333-10065352 None:intergenic 40.0%
!!! GTGTTGTTTTAAGGTGGCAA+AGG - chr8_4:10065631-10065650 Msa1312770:intron 40.0%
GAATAAGACTACTCTACCCT+CGG - chr8_4:10065655-10065674 Msa1312770:intron 40.0%
TCAATGAGGGAGATGTAGTA+TGG + chr8_4:10066084-10066103 None:intergenic 40.0%
CTACATCTCCCTCATTGAAA+AGG - chr8_4:10066086-10066105 Msa1312770:five_prime_UTR 40.0%
! GGTGCTTACCTTTTCAATGA+GGG + chr8_4:10066097-10066116 None:intergenic 40.0%
! AGGTGCTTACCTTTTCAATG+AGG + chr8_4:10066098-10066117 None:intergenic 40.0%
AAGCTGAAGTGGTGAAACAT+TGG - chr8_4:10066245-10066264 Msa1312770:five_prime_UTR 40.0%
TGATGTTGAGTCAAAGACGG+TGG - chr8_4:10063491-10063510 Msa1312770:intron 45.0%
ATGCCACAAGCCAACTCATT+TGG - chr8_4:10063555-10063574 Msa1312770:intron 45.0%
!! TGACCAAATGAGTTGGCTTG+TGG + chr8_4:10063561-10063580 None:intergenic 45.0%
GGCCTGATTGACACAGTAAA+TGG + chr8_4:10064240-10064259 None:intergenic 45.0%
GCTCTATGATTCTTTAGGCC+AGG - chr8_4:10064271-10064290 Msa1312770:CDS 45.0%
TGGGGTCCTAATAGAGGAAA+AGG + chr8_4:10064306-10064325 None:intergenic 45.0%
GACACACTTCAACACTAGTG+GGG + chr8_4:10064324-10064343 None:intergenic 45.0%
GAGACACACTTCAACACTAG+TGG + chr8_4:10064326-10064345 None:intergenic 45.0%
ACAGGGTAGAGATGAGCATA+TGG - chr8_4:10064718-10064737 Msa1312770:intron 45.0%
CAGGGTAGAGATGAGCATAT+GGG - chr8_4:10064719-10064738 Msa1312770:intron 45.0%
! GAAGATTGGCTGCACTTAAC+TGG - chr8_4:10064855-10064874 Msa1312770:intron 45.0%
!! CACTTAACTGGCCTTATCCA+TGG - chr8_4:10064867-10064886 Msa1312770:intron 45.0%
! GTGCTTCTCCTTCCTAGTTT+TGG - chr8_4:10065047-10065066 Msa1312770:intron 45.0%
!!! GCTTCTCCTTCCTAGTTTTG+GGG - chr8_4:10065049-10065068 Msa1312770:intron 45.0%
!!! CTTCTCCTTCCTAGTTTTGG+GGG - chr8_4:10065050-10065069 Msa1312770:intron 45.0%
!! TTTTGGGGGACTTCCTCAAT+GGG - chr8_4:10065064-10065083 Msa1312770:intron 45.0%
TTACCTACAACAGCCCATTG+AGG + chr8_4:10065080-10065099 None:intergenic 45.0%
TGAATCCATTGTCCACCACA+AGG - chr8_4:10065318-10065337 Msa1312770:intron 45.0%
!! GATTACCTTGTGGTGGACAA+TGG + chr8_4:10065326-10065345 None:intergenic 45.0%
ATGATGAACATAGCAGCCGA+GGG + chr8_4:10065674-10065693 None:intergenic 45.0%
TATGATGAACATAGCAGCCG+AGG + chr8_4:10065675-10065694 None:intergenic 45.0%
TTCACCACTTCAGCTTTGCA+GGG + chr8_4:10066241-10066260 None:intergenic 45.0%
TTTCACCACTTCAGCTTTGC+AGG + chr8_4:10066242-10066261 None:intergenic 45.0%
GAAACATTGGAGCCTTGAAG+TGG - chr8_4:10066258-10066277 Msa1312770:five_prime_UTR 45.0%
!! AAATAGTAATAAAATTATTA+AGG - chr8_4:10062575-10062594 Msa1312770:intron 5.0%
!! TATTATTATAAAATTATTAC+AGG - chr8_4:10063465-10063484 Msa1312770:CDS 5.0%
ATTCTCAGGGAAGGACTCTC+CGG - chr8_4:10062703-10062722 Msa1312770:CDS 50.0%
AGATATGAAGGGGTGGCTGT+TGG + chr8_4:10062750-10062769 None:intergenic 50.0%
GAGACAGAACTGGAGTTGGA+TGG - chr8_4:10063522-10063541 Msa1312770:intron 50.0%
ACAGAACTGGAGTTGGATGG+TGG - chr8_4:10063525-10063544 Msa1312770:intron 50.0%
CACTAGTGGGGTCCTAATAG+AGG + chr8_4:10064312-10064331 None:intergenic 50.0%
GCTGAAAGTGAGAGGCAAGA+AGG - chr8_4:10064460-10064479 Msa1312770:intron 50.0%
AAGTGAGAGGCAAGAAGGAG+TGG - chr8_4:10064465-10064484 Msa1312770:intron 50.0%
GAAGTCCCCCAAAACTAGGA+AGG + chr8_4:10065058-10065077 None:intergenic 50.0%
TGAGGAAGTCCCCCAAAACT+AGG + chr8_4:10065062-10065081 None:intergenic 50.0%
!!! GTTTTGGGGGACTTCCTCAA+TGG - chr8_4:10065063-10065082 Msa1312770:intron 50.0%
!! CTTCCTCAATGGGCTGTTGT+AGG - chr8_4:10065074-10065093 Msa1312770:intron 50.0%
ACTTCCCTGCAAAGCTGAAG+TGG - chr8_4:10066234-10066253 Msa1312770:five_prime_UTR 50.0%
AGGAAAAGGCTCAATGGGCC+TGG + chr8_4:10064292-10064311 None:intergenic 55.0%
GGATGAGAGTGACCCTGACT+TGG - chr8_4:10064770-10064789 Msa1312770:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 10062449 10066344 10062449 ID=Msa1312770;Name=Msa1312770
chr8_4 mRNA 10062449 10066344 10062449 ID=Msa1312770-mRNA-1;Parent=Msa1312770;Name=Msa1312770-mRNA-1;_AED=0.13;_eAED=0.13;_QI=375|1|1|1|1|1|11|85|305
chr8_4 exon 10062449 10062560 10062449 ID=Msa1312770-mRNA-1:exon:3770;Parent=Msa1312770-mRNA-1
chr8_4 exon 10062686 10062767 10062686 ID=Msa1312770-mRNA-1:exon:3769;Parent=Msa1312770-mRNA-1
chr8_4 exon 10062883 10062961 10062883 ID=Msa1312770-mRNA-1:exon:3768;Parent=Msa1312770-mRNA-1
chr8_4 exon 10063080 10063149 10063080 ID=Msa1312770-mRNA-1:exon:3767;Parent=Msa1312770-mRNA-1
chr8_4 exon 10063234 10063356 10063234 ID=Msa1312770-mRNA-1:exon:3766;Parent=Msa1312770-mRNA-1
chr8_4 exon 10063454 10063506 10063454 ID=Msa1312770-mRNA-1:exon:3765;Parent=Msa1312770-mRNA-1
chr8_4 exon 10063698 10063757 10063698 ID=Msa1312770-mRNA-1:exon:3764;Parent=Msa1312770-mRNA-1
chr8_4 exon 10063905 10064109 10063905 ID=Msa1312770-mRNA-1:exon:3763;Parent=Msa1312770-mRNA-1
chr8_4 exon 10064262 10064343 10064262 ID=Msa1312770-mRNA-1:exon:3762;Parent=Msa1312770-mRNA-1
chr8_4 exon 10065204 10065306 10065204 ID=Msa1312770-mRNA-1:exon:3761;Parent=Msa1312770-mRNA-1
chr8_4 exon 10065936 10066344 10065936 ID=Msa1312770-mRNA-1:exon:3760;Parent=Msa1312770-mRNA-1
chr8_4 five_prime_UTR 10065970 10066344 10065970 ID=Msa1312770-mRNA-1:five_prime_utr;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10065936 10065969 10065936 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10065204 10065306 10065204 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10064262 10064343 10064262 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10063905 10064109 10063905 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10063698 10063757 10063698 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10063454 10063506 10063454 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10063234 10063356 10063234 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10063080 10063149 10063080 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10062883 10062961 10062883 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10062686 10062767 10062686 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 CDS 10062534 10062560 10062534 ID=Msa1312770-mRNA-1:cds;Parent=Msa1312770-mRNA-1
chr8_4 three_prime_UTR 10062449 10062533 10062449 ID=Msa1312770-mRNA-1:three_prime_utr;Parent=Msa1312770-mRNA-1
Gene Sequence

>Msa1312770

ATGACTATCCTCATTGATCAACCTGATTATTTTGGATCTGATGTTGAGTCAAAGACGGTGGTTGTTAATGAGACAGAACTGGAGTTGGATGGTGGATTTGTTATGCCACAAGCCAACTCATTTGGTCACACTTTTAGGGATTATGCTGCTGAAAGTGAGAGGCAAGAAGGAGTGGAGAACTTCTACAAAAAAAACCACATTTACCAATCCTTTGATTTTGTGAAGAAAATGAGAGAGGAGTATGGGAAATTGAACAGGGTAGAGATGAGCATATGGGAATGTTGTGAACTTCTGAATGAAGTGGTGGATGAGAGTGACCCTGACTTGGATGAACCACAAATTGAGCACCTTCTACAAACAGCTGAAGCTATAAGAAAGGACTATCCAAATGAAGATTGGCTGCACTTAACTGGCCTTATCCATGATCTTGGCAAAGTGCTTCTCCTTCCTAGTTTTGGGGGACTTCCTCAATGGGCTGTTGTAGGTGACATATACCCAGTTGGTTGCAGATTTGATGAATCCATTGTCCACCACAAGTATTTTAAGGAAAATCCAGACTATAACAACTCTGCATACAACACTAGATATGGAATTTACTCTGAGAAATGTGGACTTAACAATGTCATGATGTCATGGGGACATGATGACTACATGTATCTAGTGGCAAAGGAGAATAAGACTACTCTACCCTCGGCTGCTATGTTCATCATAAGATACCATTCATTTTATGCTTTACATAGGGAAGGAGCTTATAAACACTTGATGAATGATGAGGATGTTGAGAACTTGAAATGGCTTCACATTTTCAACAAATATGATCTCTACAGCAAGAGCAAAGTGAGAGTTGATGTTGAAAAGGTGAAACCATACTACATCTCCCTCATTGAAAAGTACTTCCCTGCAAAGCTGAAGTGGTGA

Protein sequence

>Msa1312770

MTILIDQPDYFGSDVESKTVVVNETELELDGGFVMPQANSFGHTFRDYAAESERQEGVENFYKKNHIYQSFDFVKKMREEYGKLNRVEMSIWECCELLNEVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLLPSFGGLPQWAVVGDIYPVGCRFDESIVHHKYFKENPDYNNSAYNTRYGIYSEKCGLNNVMMSWGHDDYMYLVAKENKTTLPSAAMFIIRYHSFYALHREGAYKHLMNDEDVENLKWLHIFNKYDLYSKSKVRVDVEKVKPYYISLIEKYFPAKLKW*