Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574780 | XP_003630927.1 | 93.919 | 148 | 0 | 1 | 1 | 139 | 1 | 148 | 6.68e-93 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574780 | sp|P31674|RS15_ORYSJ | 83.784 | 148 | 15 | 1 | 1 | 139 | 1 | 148 | 1.82e-86 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574780 | G7LAJ5 | 93.919 | 148 | 0 | 1 | 1 | 139 | 1 | 148 | 3.19e-93 | 275 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0574780 | 0.819978 | 8.741568e-53 | -8.615850e-47 |
| Msa0003330 | Msa0574780 | 0.856495 | 3.095610e-62 | -8.615850e-47 |
| Msa0027590 | Msa0574780 | 0.842189 | 3.010426e-58 | -8.615850e-47 |
| Msa0042510 | Msa0574780 | 0.885803 | 5.935442e-72 | -8.615850e-47 |
| Msa0071640 | Msa0574780 | 0.812018 | 5.234309e-51 | -8.615850e-47 |
| Msa0079560 | Msa0574780 | 0.892490 | 1.512696e-74 | -8.615850e-47 |
| Msa0086160 | Msa0574780 | 0.840748 | 7.213239e-58 | -8.615850e-47 |
| Msa0098210 | Msa0574780 | 0.807827 | 4.179041e-50 | -8.615850e-47 |
| Msa0123290 | Msa0574780 | 0.827027 | 1.961965e-54 | -8.615850e-47 |
| Msa0127180 | Msa0574780 | 0.819700 | 1.012072e-52 | -8.615850e-47 |
| Msa0127230 | Msa0574780 | 0.883697 | 3.603720e-71 | -8.615850e-47 |
| Msa0128330 | Msa0574780 | 0.879847 | 8.922145e-70 | -8.615850e-47 |
| Msa0132460 | Msa0574780 | 0.849281 | 3.576670e-60 | -8.615850e-47 |
| Msa0134580 | Msa0574780 | 0.809055 | 2.285962e-50 | -8.615850e-47 |
| Msa0167860 | Msa0574780 | 0.902794 | 6.733412e-79 | -8.615850e-47 |
| Msa0168320 | Msa0574780 | 0.883485 | 4.311387e-71 | -8.615850e-47 |
| Msa0174580 | Msa0574780 | 0.873635 | 1.262176e-67 | -8.615850e-47 |
| Msa0182050 | Msa0574780 | 0.853136 | 2.916853e-61 | -8.615850e-47 |
| Msa0182100 | Msa0574780 | 0.895217 | 1.182010e-75 | -8.615850e-47 |
| Msa0188740 | Msa0574780 | 0.822196 | 2.695677e-53 | -8.615850e-47 |
| Msa0191450 | Msa0574780 | 0.830582 | 2.708463e-55 | -8.615850e-47 |
| Msa0191550 | Msa0574780 | 0.848102 | 7.590606e-60 | -8.615850e-47 |
| Msa0192300 | Msa0574780 | 0.874044 | 9.181832e-68 | -8.615850e-47 |
| Msa0194940 | Msa0574780 | 0.826781 | 2.247446e-54 | -8.615850e-47 |
| Msa0195030 | Msa0574780 | 0.825836 | 3.772132e-54 | -8.615850e-47 |
| Msa0233550 | Msa0574780 | 0.876942 | 9.343728e-69 | -8.615850e-47 |
| Msa0234850 | Msa0574780 | 0.824938 | 6.153679e-54 | -8.615850e-47 |
| Msa0234900 | Msa0574780 | 0.809739 | 1.630520e-50 | -8.615850e-47 |
| Msa0237180 | Msa0574780 | 0.828947 | 6.772277e-55 | -8.615850e-47 |
| Msa0371490 | Msa0574780 | 0.854984 | 8.552793e-62 | -8.615850e-47 |
| Msa0373350 | Msa0574780 | 0.835565 | 1.558113e-56 | -8.615850e-47 |
| Msa0376850 | Msa0574780 | 0.858707 | 6.849965e-63 | -8.615850e-47 |
| Msa0377370 | Msa0574780 | 0.842290 | 2.831046e-58 | -8.615850e-47 |
| Msa0377520 | Msa0574780 | 0.802301 | 5.988057e-49 | -8.615850e-47 |
| Msa0382670 | Msa0574780 | 0.867692 | 1.135069e-65 | -8.615850e-47 |
| Msa0383690 | Msa0574780 | 0.832913 | 7.207886e-56 | -8.615850e-47 |
| Msa0387290 | Msa0574780 | 0.828252 | 9.970561e-55 | -8.615850e-47 |
| Msa0388520 | Msa0574780 | 0.826393 | 2.781070e-54 | -8.615850e-47 |
| Msa0416470 | Msa0574780 | 0.855283 | 6.997946e-62 | -8.615850e-47 |
| Msa0426090 | Msa0574780 | 0.847238 | 1.312292e-59 | -8.615850e-47 |
| Msa0426250 | Msa0574780 | 0.847094 | 1.436805e-59 | -8.615850e-47 |
| Msa0426940 | Msa0574780 | 0.806104 | 9.672214e-50 | -8.615850e-47 |
| Msa0433010 | Msa0574780 | 0.823885 | 1.088451e-53 | -8.615850e-47 |
| Msa0450150 | Msa0574780 | 0.831009 | 2.128492e-55 | -8.615850e-47 |
| Msa0472480 | Msa0574780 | 0.843523 | 1.330187e-58 | -8.615850e-47 |
| Msa0481800 | Msa0574780 | 0.805882 | 1.076833e-49 | -8.615850e-47 |
| Msa0482560 | Msa0574780 | 0.807702 | 4.441962e-50 | -8.615850e-47 |
| Msa0239420 | Msa0574780 | 0.854154 | 1.487179e-61 | -8.615850e-47 |
| Msa0256350 | Msa0574780 | 0.809400 | 1.927952e-50 | -8.615850e-47 |
| Msa0270160 | Msa0574780 | 0.849007 | 4.260801e-60 | -8.615850e-47 |
| Msa0274940 | Msa0574780 | 0.842506 | 2.480386e-58 | -8.615850e-47 |
| Msa0277600 | Msa0574780 | 0.885867 | 5.614601e-72 | -8.615850e-47 |
| Msa0281330 | Msa0574780 | 0.818178 | 2.244110e-52 | -8.615850e-47 |
| Msa0281370 | Msa0574780 | 0.838842 | 2.260888e-57 | -8.615850e-47 |
| Msa0301250 | Msa0574780 | 0.884237 | 2.276283e-71 | -8.615850e-47 |
| Msa0313060 | Msa0574780 | 0.876644 | 1.185469e-68 | -8.615850e-47 |
| Msa0315430 | Msa0574780 | 0.871013 | 9.443246e-67 | -8.615850e-47 |
| Msa0315660 | Msa0574780 | 0.825895 | 3.652021e-54 | -8.615850e-47 |
| Msa0340560 | Msa0574780 | 0.802722 | 4.902188e-49 | -8.615850e-47 |
| Msa0485220 | Msa0574780 | 0.842028 | 3.321075e-58 | -8.615850e-47 |
| Msa0511760 | Msa0574780 | 0.862699 | 4.211727e-64 | -8.615850e-47 |
| Msa0516830 | Msa0574780 | 0.859183 | 4.934256e-63 | -8.615850e-47 |
| Msa0521730 | Msa0574780 | 0.811881 | 5.607464e-51 | -8.615850e-47 |
| Msa0547920 | Msa0574780 | 0.885771 | 6.099275e-72 | -8.615850e-47 |
| Msa0552510 | Msa0574780 | 0.800869 | 1.177379e-48 | -8.615850e-47 |
| Msa0573550 | Msa0574780 | 0.885886 | 5.523544e-72 | -8.615850e-47 |
| Msa0574780 | Msa0578010 | 0.860557 | 1.901413e-63 | -8.615850e-47 |
| Msa0574780 | Msa0579830 | 0.852442 | 4.604148e-61 | -8.615850e-47 |
| Msa0574780 | Msa0585570 | 0.801202 | 1.006224e-48 | -8.615850e-47 |
| Msa0574780 | Msa0597240 | 0.846908 | 1.616018e-59 | -8.615850e-47 |
| Msa0574780 | Msa0602900 | 0.885957 | 5.190658e-72 | -8.615850e-47 |
| Msa0574780 | Msa0605140 | 0.807500 | 4.902741e-50 | -8.615850e-47 |
| Msa0574780 | Msa0605600 | 0.842448 | 2.570295e-58 | -8.615850e-47 |
| Msa0574780 | Msa0605890 | 0.881677 | 1.968258e-70 | -8.615850e-47 |
| Msa0574780 | Msa0609120 | 0.847414 | 1.173894e-59 | -8.615850e-47 |
| Msa0574780 | Msa0619230 | 0.875470 | 3.004719e-68 | -8.615850e-47 |
| Msa0574780 | Msa0621190 | 0.851495 | 8.551901e-61 | -8.615850e-47 |
| Msa0574780 | Msa0643960 | 0.880689 | 4.462620e-70 | -8.615850e-47 |
| Msa0574780 | Msa0649890 | 0.862996 | 3.410073e-64 | -8.615850e-47 |
| Msa0574780 | Msa0656450 | 0.888344 | 6.416237e-73 | -8.615850e-47 |
| Msa0574780 | Msa0663400 | 0.812163 | 4.867201e-51 | -8.615850e-47 |
| Msa0574780 | Msa0686550 | 0.862183 | 6.070903e-64 | -8.615850e-47 |
| Msa0574780 | Msa0691760 | 0.855904 | 4.611528e-62 | -8.615850e-47 |
| Msa0574780 | Msa0694400 | 0.874027 | 9.308766e-68 | -8.615850e-47 |
| Msa0574780 | Msa0700370 | 0.857571 | 1.491254e-62 | -8.615850e-47 |
| Msa0574780 | Msa0704860 | 0.842827 | 2.038072e-58 | -8.615850e-47 |
| Msa0574780 | Msa0708630 | 0.850638 | 1.491494e-60 | -8.615850e-47 |
| Msa0574780 | Msa0741510 | 0.804877 | 1.748989e-49 | -8.615850e-47 |
| Msa0574780 | Msa0790450 | 0.842364 | 2.705563e-58 | -8.615850e-47 |
| Msa0574780 | Msa0834220 | 0.839211 | 1.814276e-57 | -8.615850e-47 |
| Msa0574780 | Msa0835190 | 0.801114 | 1.048885e-48 | -8.615850e-47 |
| Msa0574780 | Msa0902730 | 0.829705 | 4.432694e-55 | -8.615850e-47 |
| Msa0574780 | Msa0929700 | 0.885373 | 8.599028e-72 | -8.615850e-47 |
| Msa0574780 | Msa0930360 | 0.844723 | 6.336537e-59 | -8.615850e-47 |
| Msa0574780 | Msa0930790 | 0.828485 | 8.760009e-55 | -8.615850e-47 |
| Msa0574780 | Msa0930890 | 0.920114 | 1.927129e-87 | -8.615850e-47 |
| Msa0574780 | Msa0979820 | 0.800779 | 1.227782e-48 | -8.615850e-47 |
| Msa0574780 | Msa1019110 | 0.806147 | 9.473541e-50 | -8.615850e-47 |
| Msa0574780 | Msa1068660 | 0.809739 | 1.630520e-50 | -8.615850e-47 |
| Msa0574780 | Msa1080390 | 0.805571 | 1.251635e-49 | -8.615850e-47 |
| Msa0574780 | Msa1082050 | 0.885101 | 1.086668e-71 | -8.615850e-47 |
| Msa0574780 | Msa1085850 | 0.807794 | 4.246564e-50 | -8.615850e-47 |
| Msa0574780 | Msa1093500 | 0.830817 | 2.371545e-55 | -8.615850e-47 |
| Msa0574780 | Msa1116940 | 0.800241 | 1.580696e-48 | -8.615850e-47 |
| Msa0574780 | Msa1125900 | 0.809221 | 2.105966e-50 | -8.615850e-47 |
| Msa0574780 | Msa1126100 | 0.804734 | 1.874037e-49 | -8.615850e-47 |
| Msa0574780 | Msa1126690 | 0.857374 | 1.704856e-62 | -8.615850e-47 |
| Msa0574780 | Msa1130680 | 0.814289 | 1.661747e-51 | -8.615850e-47 |
| Msa0574780 | Msa1156830 | 0.820729 | 5.881143e-53 | -8.615850e-47 |
| Msa0574780 | Msa1165210 | 0.832776 | 7.795115e-56 | -8.615850e-47 |
| Msa0574780 | Msa1165700 | 0.814677 | 1.363826e-51 | -8.615850e-47 |
| Msa0574780 | Msa1180000 | 0.811656 | 6.278081e-51 | -8.615850e-47 |
| Msa0574780 | Msa1213850 | 0.829226 | 5.793777e-55 | -8.615850e-47 |
| Msa0574780 | Msa1219760 | 0.803502 | 3.381035e-49 | -8.615850e-47 |
| Msa0574780 | Msa1227350 | 0.810479 | 1.129148e-50 | -8.615850e-47 |
| Msa0574780 | Msa1235950 | 0.905347 | 4.726522e-80 | -8.615850e-47 |
| Msa0574780 | Msa1235980 | 0.910348 | 2.071362e-82 | -8.615850e-47 |
| Msa0574780 | Msa1237040 | 0.866861 | 2.091425e-65 | -8.615850e-47 |
| Msa0574780 | Msa1258540 | 0.827583 | 1.444118e-54 | -8.615850e-47 |
| Msa0574780 | Msa1269250 | -0.820064 | 8.355861e-53 | -8.615850e-47 |
| Msa0574780 | Msa1284800 | 0.837691 | 4.475893e-57 | -8.615850e-47 |
| Msa0574780 | Msa1316100 | 0.852884 | 3.443396e-61 | -8.615850e-47 |
| Msa0574780 | Msa1317390 | 0.890855 | 6.750114e-74 | -8.615850e-47 |
| Msa0574780 | Msa1333370 | 0.814686 | 1.357708e-51 | -8.615850e-47 |
| Msa0574780 | Msa1341780 | 0.817366 | 3.422746e-52 | -8.615850e-47 |
| Msa0574780 | Msa1351020 | 0.912487 | 1.842128e-83 | -8.615850e-47 |
| Msa0574780 | Msa1366540 | 0.827084 | 1.901658e-54 | -8.615850e-47 |
| Msa0574780 | Msa1385480 | 0.870650 | 1.243119e-66 | -8.615850e-47 |
| Msa0574780 | Msa1387750 | 0.858011 | 1.103572e-62 | -8.615850e-47 |
| Msa0574780 | Msa1390760 | 0.875933 | 2.083575e-68 | -8.615850e-47 |
| Msa0574780 | Msa1403520 | 0.811063 | 8.445081e-51 | -8.615850e-47 |
| Msa0574780 | Msa1407550 | 0.958376 | 2.745124e-116 | -8.615850e-47 |
| Msa0574780 | Msa1413570 | 0.887957 | 9.031664e-73 | -8.615850e-47 |
| Msa0574780 | Msa1421510 | 0.807372 | 5.219866e-50 | -8.615850e-47 |
| Msa0574780 | Msa1424570 | 0.815215 | 1.036255e-51 | -8.615850e-47 |
| Msa0574780 | Msa1432310 | 0.890762 | 7.345660e-74 | -8.615850e-47 |
| Msa0574780 | Msa1441220 | -0.824597 | 7.406326e-54 | -8.615850e-47 |
| Msa0574780 | Msa1446410 | 0.843520 | 1.332250e-58 | -8.615850e-47 |
| Msa0574780 | Msa1446510 | 0.823957 | 1.047067e-53 | -8.615850e-47 |
| Msa0574780 | Msa1450560 | 0.845927 | 2.992412e-59 | -8.615850e-47 |
| Msa0574780 | Msa1453530 | 0.823374 | 1.433825e-53 | -8.615850e-47 |
| Msa0574780 | Msa1462580 | 0.841167 | 5.599511e-58 | -8.615850e-47 |
| Msa0574780 | Msa1463570 | 0.875284 | 3.479913e-68 | -8.615850e-47 |
| Msa0574780 | Msa1465700 | 0.908455 | 1.677885e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574780 | MtrunA17_Chr8g0391601 | 93.919 | 148 | 0 | 1 | 1 | 139 | 1 | 148 | 6.15e-97 | 275 |
| Msa0574780 | MtrunA17_Chr1g0184681 | 89.189 | 148 | 5 | 2 | 1 | 139 | 1 | 146 | 4.41e-90 | 258 |
| Msa0574780 | MtrunA17_Chr4g0038481 | 87.162 | 148 | 8 | 2 | 1 | 139 | 1 | 146 | 9.48e-79 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574780 | AT5G09500.1 | 82.432 | 148 | 13 | 2 | 1 | 139 | 1 | 144 | 1.13e-81 | 237 |
| Msa0574780 | AT5G09510.1 | 85.811 | 148 | 10 | 2 | 1 | 139 | 1 | 146 | 3.71e-79 | 231 |
| Msa0574780 | AT1G04270.1 | 85.811 | 148 | 10 | 2 | 1 | 139 | 1 | 146 | 3.88e-79 | 231 |
| Msa0574780 | AT1G04270.2 | 85.714 | 147 | 11 | 2 | 1 | 139 | 1 | 145 | 1.94e-78 | 229 |
| Msa0574780 | AT5G09490.1 | 77.027 | 148 | 23 | 2 | 1 | 139 | 1 | 146 | 2.61e-77 | 226 |
| Msa0574780 | AT5G43640.1 | 80.420 | 143 | 19 | 1 | 6 | 139 | 1 | 143 | 2.63e-70 | 208 |
| Msa0574780 | AT5G09510.2 | 87.500 | 112 | 5 | 1 | 37 | 139 | 1 | 112 | 3.08e-58 | 176 |
| Msa0574780 | AT5G63070.1 | 61.224 | 147 | 46 | 1 | 1 | 136 | 1 | 147 | 7.33e-58 | 177 |
| Msa0574780 | AT1G33850.1 | 83.607 | 61 | 10 | 0 | 12 | 72 | 7 | 67 | 7.56e-20 | 77.8 |
Find 42 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCGCTGGGTTTACGATTA+AGG | 0.213544 | 4_1:+78532159 | None:intergenic |
| CTGAATTCGCCGGTGCTCGC+TGG | 0.234858 | 4_1:+78532145 | None:intergenic |
| TTTGATTTCAACTTGGTTAA+AGG | 0.236449 | 4_1:+78530669 | None:intergenic |
| GAGATGATTGGGAGCATTAT+TGG | 0.247005 | 4_1:-78530709 | Msa0574780:CDS |
| CAGTTTCAGAGGAGTTGATT+TGG | 0.292075 | 4_1:-78531942 | Msa0574780:CDS |
| CCAGGTCTACCATGCTTAAC+AGG | 0.341486 | 4_1:+78530598 | None:intergenic |
| TCAGTGCTCGTGCTCGTAGA+AGG | 0.367007 | 4_1:-78531877 | Msa0574780:CDS |
| TTCTTGAATGTTCTCTTCTT+CGG | 0.377124 | 4_1:+78531968 | None:intergenic |
| TGAATTCGCCGGTGCTCGCT+GGG | 0.404552 | 4_1:+78532146 | None:intergenic |
| AGATGGGTCCTAACAGGTTC+GGG | 0.405557 | 4_1:+78530754 | None:intergenic |
| GTGAGAAGCCCGAACCTGTT+AGG | 0.409377 | 4_1:-78530762 | Msa0574780:intron |
| GATGCAGCAGCCGCCGCCGC+GGG | 0.422266 | 4_1:-78531995 | Msa0574780:CDS |
| TTACGAAGATGGGTCCTAAC+AGG | 0.435557 | 4_1:+78530748 | None:intergenic |
| AAGATGGGTCCTAACAGGTT+CGG | 0.450751 | 4_1:+78530753 | None:intergenic |
| CAATGATCATGTTACGAAGA+TGG | 0.465315 | 4_1:+78530737 | None:intergenic |
| ATCATTGTACCTGAGATGAT+TGG | 0.468347 | 4_1:-78530721 | Msa0574780:CDS |
| TTCAAGAAGTTCAGTTTCAG+AGG | 0.481387 | 4_1:-78531953 | Msa0574780:CDS |
| AGGTAATGACCGATCATCTC+AGG | 0.492365 | 4_1:+78530646 | None:intergenic |
| CCTGTTAAGCATGGTAGACC+TGG | 0.509940 | 4_1:-78530598 | Msa0574780:CDS |
| AATGATCATGTTACGAAGAT+GGG | 0.516658 | 4_1:+78530738 | None:intergenic |
| GCATTATTGGAGTGTACAAT+GGG | 0.517140 | 4_1:-78530696 | Msa0574780:CDS |
| CTTCGGTACTCCCGCGGCGG+CGG | 0.518043 | 4_1:+78531985 | None:intergenic |
| TTGGTGCTACTCACTCCTCC+AGG | 0.521787 | 4_1:-78530573 | None:intergenic |
| ATCGTAAACCCAGCGAGCAC+CGG | 0.522508 | 4_1:-78532154 | Msa0574780:five_prime_UTR |
| ATAATGCTCCCAATCATCTC+AGG | 0.528225 | 4_1:+78530712 | None:intergenic |
| TCATTGTACCTGAGATGATT+GGG | 0.539509 | 4_1:-78530720 | Msa0574780:CDS |
| GCTTACGAGTGAGACCTCTC+TGG | 0.541580 | 4_1:+78531852 | None:intergenic |
| TCTCAGGTTTGATTTCAACT+TGG | 0.546765 | 4_1:+78530662 | None:intergenic |
| CTCACCATTGCTGAATTCGC+CGG | 0.552468 | 4_1:+78532135 | None:intergenic |
| AGCATTATTGGAGTGTACAA+TGG | 0.558872 | 4_1:-78530697 | Msa0574780:CDS |
| AGATGCAGCAGCCGCCGCCG+CGG | 0.579389 | 4_1:-78531996 | Msa0574780:CDS |
| GAGTGAGTAGCACCAATACC+AGG | 0.584094 | 4_1:+78530580 | None:intergenic |
| GAAATCAAACCTGAGATGAT+CGG | 0.585387 | 4_1:-78530655 | Msa0574780:CDS |
| AAGCATGGTAGACCTGGTAT+TGG | 0.586812 | 4_1:-78530592 | Msa0574780:CDS |
| TCATACAAGCCTGTTAAGCA+TGG | 0.604339 | 4_1:-78530607 | Msa0574780:CDS |
| GAGCTTAACAAGCTCATCAG+TGG | 0.607114 | 4_1:+78531901 | None:intergenic |
| AGGTCTCACTCGTAAGCCCA+TGG | 0.623580 | 4_1:-78531846 | Msa0574780:CDS |
| AGCACCGGCGAATTCAGCAA+TGG | 0.648064 | 4_1:-78532139 | Msa0574780:intron |
| ATGAGATCGAGAATTCAGCT+AGG | 0.682732 | 4_1:+78530626 | None:intergenic |
| TCTCTTCTTCGGTACTCCCG+CGG | 0.697626 | 4_1:+78531979 | None:intergenic |
| CTTCTTCGGTACTCCCGCGG+CGG | 0.700206 | 4_1:+78531982 | None:intergenic |
| GCTCGTAGAAGGTTCCAGAG+AGG | 0.763484 | 4_1:-78531866 | Msa0574780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAAAGAAATGAAAAT+GGG | + | chr4_1:78530968-78530987 | None:intergenic | 10.0% |
| !! | ATAAATAAAAGAAATGAAAA+TGG | + | chr4_1:78530969-78530988 | None:intergenic | 10.0% |
| !!! | ATTACTATTTTACAAATTTA+AGG | + | chr4_1:78531087-78531106 | None:intergenic | 10.0% |
| !! | TAAATTTGTAAAATAGTAAT+TGG | - | chr4_1:78531087-78531106 | Msa0574780:intron | 10.0% |
| !! | TAAATAAAAGAAATGAAAAT+GGG | + | chr4_1:78530968-78530987 | None:intergenic | 10.0% |
| !! | ATAAATAAAAGAAATGAAAA+TGG | + | chr4_1:78530969-78530988 | None:intergenic | 10.0% |
| !!! | ATTACTATTTTACAAATTTA+AGG | + | chr4_1:78531087-78531106 | None:intergenic | 10.0% |
| !! | TAAATTTGTAAAATAGTAAT+TGG | - | chr4_1:78531087-78531106 | Msa0574780:intron | 10.0% |
| !! | AAATCAAATTCAAATTCAAT+CGG | + | chr4_1:78530687-78530706 | None:intergenic | 15.0% |
| !!! | TTTGATTTTGATTTTGAATT+TGG | - | chr4_1:78530699-78530718 | Msa0574780:CDS | 15.0% |
| !!! | TTTGTTATTTTGTTAATTTG+AGG | - | chr4_1:78531336-78531355 | Msa0574780:intron | 15.0% |
| !! | ATTACTATTATGCAAATTTA+AGG | + | chr4_1:78531402-78531421 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTGTTCAATTTAA+GGG | + | chr4_1:78531430-78531449 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGTGTTCAATTTA+AGG | + | chr4_1:78531431-78531450 | None:intergenic | 15.0% |
| !!! | TGAACACTTTTTTTTTTTTT+TGG | - | chr4_1:78531436-78531455 | Msa0574780:intron | 15.0% |
| !!! | TTTGTTATTCTTTTATTTAG+TGG | - | chr4_1:78531573-78531592 | Msa0574780:intron | 15.0% |
| !!! | ATTGTTATAATTTTGTGAAT+TGG | - | chr4_1:78531937-78531956 | Msa0574780:CDS | 15.0% |
| !! | AAATCAAATTCAAATTCAAT+CGG | + | chr4_1:78530687-78530706 | None:intergenic | 15.0% |
| !!! | TTTGATTTTGATTTTGAATT+TGG | - | chr4_1:78530699-78530718 | Msa0574780:CDS | 15.0% |
| !!! | TTTGTTATTTTGTTAATTTG+AGG | - | chr4_1:78531336-78531355 | Msa0574780:intron | 15.0% |
| !! | ATTACTATTATGCAAATTTA+AGG | + | chr4_1:78531402-78531421 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTGTTCAATTTAA+GGG | + | chr4_1:78531430-78531449 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGTGTTCAATTTA+AGG | + | chr4_1:78531431-78531450 | None:intergenic | 15.0% |
| !!! | TGAACACTTTTTTTTTTTTT+TGG | - | chr4_1:78531436-78531455 | Msa0574780:intron | 15.0% |
| !!! | TTTGTTATTCTTTTATTTAG+TGG | - | chr4_1:78531573-78531592 | Msa0574780:intron | 15.0% |
| !!! | ATTGTTATAATTTTGTGAAT+TGG | - | chr4_1:78531937-78531956 | Msa0574780:CDS | 15.0% |
| !!! | GTTAGTATTTTGCATATTAA+AGG | + | chr4_1:78531055-78531074 | None:intergenic | 20.0% |
| !! | ATATGCAAAATACTAACAAT+TGG | - | chr4_1:78531058-78531077 | Msa0574780:intron | 20.0% |
| !! | TATGCAAAATACTAACAATT+GGG | - | chr4_1:78531059-78531078 | Msa0574780:intron | 20.0% |
| !!! | GAAGTTTTTATTGATTTTGT+TGG | - | chr4_1:78531509-78531528 | Msa0574780:intron | 20.0% |
| !!! | AGGACTAACATTAAAATTTT+TGG | + | chr4_1:78531611-78531630 | None:intergenic | 20.0% |
| !!! | ATTTAACACTACCATTTTAA+AGG | - | chr4_1:78531700-78531719 | Msa0574780:intron | 20.0% |
| !!! | TGGTGGTTTTTTAAATTTAA+AGG | - | chr4_1:78531836-78531855 | Msa0574780:CDS | 20.0% |
| !!! | TTTGTTAATTTGTGAATTTG+AGG | - | chr4_1:78531864-78531883 | Msa0574780:CDS | 20.0% |
| !!! | TTGTTAATTTGTGAATTTGA+GGG | - | chr4_1:78531865-78531884 | Msa0574780:CDS | 20.0% |
| !! | TTTAGTACTTAAGATAGTAA+GGG | + | chr4_1:78531905-78531924 | None:intergenic | 20.0% |
| !!! | TTTTAGTACTTAAGATAGTA+AGG | + | chr4_1:78531906-78531925 | None:intergenic | 20.0% |
| !!! | GTTAGTATTTTGCATATTAA+AGG | + | chr4_1:78531055-78531074 | None:intergenic | 20.0% |
| !! | ATATGCAAAATACTAACAAT+TGG | - | chr4_1:78531058-78531077 | Msa0574780:intron | 20.0% |
| !! | TATGCAAAATACTAACAATT+GGG | - | chr4_1:78531059-78531078 | Msa0574780:intron | 20.0% |
| !!! | GAAGTTTTTATTGATTTTGT+TGG | - | chr4_1:78531509-78531528 | Msa0574780:intron | 20.0% |
| !!! | AGGACTAACATTAAAATTTT+TGG | + | chr4_1:78531611-78531630 | None:intergenic | 20.0% |
| !!! | ATTTAACACTACCATTTTAA+AGG | - | chr4_1:78531700-78531719 | Msa0574780:intron | 20.0% |
| !!! | TGGTGGTTTTTTAAATTTAA+AGG | - | chr4_1:78531836-78531855 | Msa0574780:CDS | 20.0% |
| !!! | TTTGTTAATTTGTGAATTTG+AGG | - | chr4_1:78531864-78531883 | Msa0574780:CDS | 20.0% |
| !!! | TTGTTAATTTGTGAATTTGA+GGG | - | chr4_1:78531865-78531884 | Msa0574780:CDS | 20.0% |
| !! | TTTAGTACTTAAGATAGTAA+GGG | + | chr4_1:78531905-78531924 | None:intergenic | 20.0% |
| !!! | TTTTAGTACTTAAGATAGTA+AGG | + | chr4_1:78531906-78531925 | None:intergenic | 20.0% |
| ! | AAATCCATGTTAGATTCTAT+CGG | + | chr4_1:78530664-78530683 | None:intergenic | 25.0% |
| !!! | AATTTGGAATTGAATTTTGC+AGG | - | chr4_1:78530715-78530734 | Msa0574780:CDS | 25.0% |
| !! | AAACAACATTCTTAGCATTT+TGG | - | chr4_1:78531012-78531031 | Msa0574780:intron | 25.0% |
| !! | AACAACATTCTTAGCATTTT+GGG | - | chr4_1:78531013-78531032 | Msa0574780:intron | 25.0% |
| ! | AGTAATTGGATACCAAAAAT+TGG | - | chr4_1:78531101-78531120 | Msa0574780:intron | 25.0% |
| !! | ATATGACATTGTCCAATTTT+TGG | + | chr4_1:78531116-78531135 | None:intergenic | 25.0% |
| ! | AACATGAAACCATTAAAATG+GGG | + | chr4_1:78531178-78531197 | None:intergenic | 25.0% |
| ! | GAACATGAAACCATTAAAAT+GGG | + | chr4_1:78531179-78531198 | None:intergenic | 25.0% |
| ! | TGAACATGAAACCATTAAAA+TGG | + | chr4_1:78531180-78531199 | None:intergenic | 25.0% |
| !!! | CTCTTGTTGATTATTGATTT+TGG | - | chr4_1:78531249-78531268 | Msa0574780:intron | 25.0% |
| !!! | TTGTTGATTATTGATTTTGG+TGG | - | chr4_1:78531252-78531271 | Msa0574780:intron | 25.0% |
| !!! | TGTTGATTATTGATTTTGGT+GGG | - | chr4_1:78531253-78531272 | Msa0574780:intron | 25.0% |
| !!! | CTGAAGATATATTTTGATTG+AGG | - | chr4_1:78531282-78531301 | Msa0574780:intron | 25.0% |
| !!! | GAAATTGATTGCTGTTTTTA+GGG | - | chr4_1:78531308-78531327 | Msa0574780:intron | 25.0% |
| ! | AAGGAACTAAATTGATATCT+TGG | + | chr4_1:78531383-78531402 | None:intergenic | 25.0% |
| !!! | TATGCCTTTTCAAGTTTATA+TGG | - | chr4_1:78531487-78531506 | Msa0574780:intron | 25.0% |
| ! | ACTTCCATATAAACTTGAAA+AGG | + | chr4_1:78531494-78531513 | None:intergenic | 25.0% |
| !! | GTGCTAATTTGCAAATATAA+AGG | + | chr4_1:78531631-78531650 | None:intergenic | 25.0% |
| ! | AATAGCGATATTTAGGTATA+GGG | - | chr4_1:78531802-78531821 | Msa0574780:intron | 25.0% |
| !! | TTTGATTTCAACTTGGTTAA+AGG | + | chr4_1:78532081-78532100 | None:intergenic | 25.0% |
| ! | AAATCCATGTTAGATTCTAT+CGG | + | chr4_1:78530664-78530683 | None:intergenic | 25.0% |
| !!! | AATTTGGAATTGAATTTTGC+AGG | - | chr4_1:78530715-78530734 | Msa0574780:CDS | 25.0% |
| !! | AAACAACATTCTTAGCATTT+TGG | - | chr4_1:78531012-78531031 | Msa0574780:intron | 25.0% |
| !! | AACAACATTCTTAGCATTTT+GGG | - | chr4_1:78531013-78531032 | Msa0574780:intron | 25.0% |
| ! | AGTAATTGGATACCAAAAAT+TGG | - | chr4_1:78531101-78531120 | Msa0574780:intron | 25.0% |
| !! | ATATGACATTGTCCAATTTT+TGG | + | chr4_1:78531116-78531135 | None:intergenic | 25.0% |
| ! | AACATGAAACCATTAAAATG+GGG | + | chr4_1:78531178-78531197 | None:intergenic | 25.0% |
| ! | GAACATGAAACCATTAAAAT+GGG | + | chr4_1:78531179-78531198 | None:intergenic | 25.0% |
| ! | TGAACATGAAACCATTAAAA+TGG | + | chr4_1:78531180-78531199 | None:intergenic | 25.0% |
| !!! | CTCTTGTTGATTATTGATTT+TGG | - | chr4_1:78531249-78531268 | Msa0574780:intron | 25.0% |
| !!! | TTGTTGATTATTGATTTTGG+TGG | - | chr4_1:78531252-78531271 | Msa0574780:intron | 25.0% |
| !!! | TGTTGATTATTGATTTTGGT+GGG | - | chr4_1:78531253-78531272 | Msa0574780:intron | 25.0% |
| !!! | CTGAAGATATATTTTGATTG+AGG | - | chr4_1:78531282-78531301 | Msa0574780:intron | 25.0% |
| !!! | GAAATTGATTGCTGTTTTTA+GGG | - | chr4_1:78531308-78531327 | Msa0574780:intron | 25.0% |
| ! | AAGGAACTAAATTGATATCT+TGG | + | chr4_1:78531383-78531402 | None:intergenic | 25.0% |
| !!! | TATGCCTTTTCAAGTTTATA+TGG | - | chr4_1:78531487-78531506 | Msa0574780:intron | 25.0% |
| ! | ACTTCCATATAAACTTGAAA+AGG | + | chr4_1:78531494-78531513 | None:intergenic | 25.0% |
| !! | GTGCTAATTTGCAAATATAA+AGG | + | chr4_1:78531631-78531650 | None:intergenic | 25.0% |
| ! | AATAGCGATATTTAGGTATA+GGG | - | chr4_1:78531802-78531821 | Msa0574780:intron | 25.0% |
| !! | TTTGATTTCAACTTGGTTAA+AGG | + | chr4_1:78532081-78532100 | None:intergenic | 25.0% |
| ATTTCCGATAGAATCTAACA+TGG | - | chr4_1:78530657-78530676 | Msa0574780:CDS | 30.0% | |
| TTCTTGAATGTTCTCTTCTT+CGG | + | chr4_1:78530782-78530801 | None:intergenic | 30.0% | |
| ! | TTAAAATGGGGTACTAAAGT+CGG | + | chr4_1:78531166-78531185 | None:intergenic | 30.0% |
| ! | ACTTTAGTACCCCATTTTAA+TGG | - | chr4_1:78531166-78531185 | Msa0574780:intron | 30.0% |
| !!! | CGAAATTGATTGCTGTTTTT+AGG | - | chr4_1:78531307-78531326 | Msa0574780:intron | 30.0% |
| AAGGCATATAACCTTCAAAA+TGG | + | chr4_1:78531475-78531494 | None:intergenic | 30.0% | |
| ! | ACGCATGTAAACCTTTAAAA+TGG | + | chr4_1:78531714-78531733 | None:intergenic | 30.0% |
| CTTACTGAATAGCGATATTT+AGG | - | chr4_1:78531795-78531814 | Msa0574780:intron | 30.0% | |
| GAATAGCGATATTTAGGTAT+AGG | - | chr4_1:78531801-78531820 | Msa0574780:intron | 30.0% | |
| TTGTGAATTGGTTGTAGAAA+AGG | - | chr4_1:78531949-78531968 | Msa0574780:CDS | 30.0% | |
| TGTGAATTGGTTGTAGAAAA+GGG | - | chr4_1:78531950-78531969 | Msa0574780:CDS | 30.0% | |
| AATGATCATGTTACGAAGAT+GGG | + | chr4_1:78532012-78532031 | None:intergenic | 30.0% | |
| CGATTAAGGAGAACAAAATT+TGG | + | chr4_1:78530577-78530596 | None:intergenic | 30.0% | |
| ATTTCCGATAGAATCTAACA+TGG | - | chr4_1:78530657-78530676 | Msa0574780:CDS | 30.0% | |
| TTCTTGAATGTTCTCTTCTT+CGG | + | chr4_1:78530782-78530801 | None:intergenic | 30.0% | |
| ! | TTAAAATGGGGTACTAAAGT+CGG | + | chr4_1:78531166-78531185 | None:intergenic | 30.0% |
| ! | ACTTTAGTACCCCATTTTAA+TGG | - | chr4_1:78531166-78531185 | Msa0574780:intron | 30.0% |
| !!! | CGAAATTGATTGCTGTTTTT+AGG | - | chr4_1:78531307-78531326 | Msa0574780:intron | 30.0% |
| AAGGCATATAACCTTCAAAA+TGG | + | chr4_1:78531475-78531494 | None:intergenic | 30.0% | |
| ! | ACGCATGTAAACCTTTAAAA+TGG | + | chr4_1:78531714-78531733 | None:intergenic | 30.0% |
| CTTACTGAATAGCGATATTT+AGG | - | chr4_1:78531795-78531814 | Msa0574780:intron | 30.0% | |
| GAATAGCGATATTTAGGTAT+AGG | - | chr4_1:78531801-78531820 | Msa0574780:intron | 30.0% | |
| TTGTGAATTGGTTGTAGAAA+AGG | - | chr4_1:78531949-78531968 | Msa0574780:CDS | 30.0% | |
| TGTGAATTGGTTGTAGAAAA+GGG | - | chr4_1:78531950-78531969 | Msa0574780:CDS | 30.0% | |
| AATGATCATGTTACGAAGAT+GGG | + | chr4_1:78532012-78532031 | None:intergenic | 30.0% | |
| ATCGGAAATCAAGTTTCAGA+AGG | + | chr4_1:78530646-78530665 | None:intergenic | 35.0% | |
| TTCAAGAAGTTCAGTTTCAG+AGG | - | chr4_1:78530794-78530813 | Msa0574780:intron | 35.0% | |
| ! | CAAAGTTACCACCATTTTGA+AGG | - | chr4_1:78531461-78531480 | Msa0574780:intron | 35.0% |
| GCATATAACCTTCAAAATGG+TGG | + | chr4_1:78531472-78531491 | None:intergenic | 35.0% | |
| GTGACTCAGTGTTCAAATTA+AGG | + | chr4_1:78531661-78531680 | None:intergenic | 35.0% | |
| GGTATAGGGACTAAATTGAT+TGG | - | chr4_1:78531816-78531835 | Msa0574780:intron | 35.0% | |
| ATAGGGACTAAATTGATTGG+TGG | - | chr4_1:78531819-78531838 | Msa0574780:intron | 35.0% | |
| CAATGATCATGTTACGAAGA+TGG | + | chr4_1:78532013-78532032 | None:intergenic | 35.0% | |
| ATCATTGTACCTGAGATGAT+TGG | - | chr4_1:78532026-78532045 | Msa0574780:intron | 35.0% | |
| TCATTGTACCTGAGATGATT+GGG | - | chr4_1:78532027-78532046 | Msa0574780:intron | 35.0% | |
| AGCATTATTGGAGTGTACAA+TGG | - | chr4_1:78532050-78532069 | Msa0574780:intron | 35.0% | |
| GCATTATTGGAGTGTACAAT+GGG | - | chr4_1:78532051-78532070 | Msa0574780:intron | 35.0% | |
| ! | TCTCAGGTTTGATTTCAACT+TGG | + | chr4_1:78532088-78532107 | None:intergenic | 35.0% |
| GAAATCAAACCTGAGATGAT+CGG | - | chr4_1:78532092-78532111 | Msa0574780:intron | 35.0% | |
| ATCGGAAATCAAGTTTCAGA+AGG | + | chr4_1:78530646-78530665 | None:intergenic | 35.0% | |
| TTCAAGAAGTTCAGTTTCAG+AGG | - | chr4_1:78530794-78530813 | Msa0574780:intron | 35.0% | |
| ! | CAAAGTTACCACCATTTTGA+AGG | - | chr4_1:78531461-78531480 | Msa0574780:intron | 35.0% |
| GCATATAACCTTCAAAATGG+TGG | + | chr4_1:78531472-78531491 | None:intergenic | 35.0% | |
| GTGACTCAGTGTTCAAATTA+AGG | + | chr4_1:78531661-78531680 | None:intergenic | 35.0% | |
| GGTATAGGGACTAAATTGAT+TGG | - | chr4_1:78531816-78531835 | Msa0574780:intron | 35.0% | |
| ATAGGGACTAAATTGATTGG+TGG | - | chr4_1:78531819-78531838 | Msa0574780:intron | 35.0% | |
| CAATGATCATGTTACGAAGA+TGG | + | chr4_1:78532013-78532032 | None:intergenic | 35.0% | |
| ATCATTGTACCTGAGATGAT+TGG | - | chr4_1:78532026-78532045 | Msa0574780:intron | 35.0% | |
| TCATTGTACCTGAGATGATT+GGG | - | chr4_1:78532027-78532046 | Msa0574780:intron | 35.0% | |
| AGCATTATTGGAGTGTACAA+TGG | - | chr4_1:78532050-78532069 | Msa0574780:intron | 35.0% | |
| GCATTATTGGAGTGTACAAT+GGG | - | chr4_1:78532051-78532070 | Msa0574780:intron | 35.0% | |
| ! | TCTCAGGTTTGATTTCAACT+TGG | + | chr4_1:78532088-78532107 | None:intergenic | 35.0% |
| GAAATCAAACCTGAGATGAT+CGG | - | chr4_1:78532092-78532111 | Msa0574780:intron | 35.0% | |
| ! | CAGTTTCAGAGGAGTTGATT+TGG | - | chr4_1:78530805-78530824 | Msa0574780:intron | 40.0% |
| ! | AGCTTTTTGATGAGAGCCAT+GGG | + | chr4_1:78530920-78530939 | None:intergenic | 40.0% |
| ! | AAGCTTTTTGATGAGAGCCA+TGG | + | chr4_1:78530921-78530940 | None:intergenic | 40.0% |
| CATCAAAAAGCTTCGCAAAG+CGG | - | chr4_1:78530928-78530947 | Msa0574780:intron | 40.0% | |
| GAATTGGTTGTAGAAAAGGG+AGG | - | chr4_1:78531953-78531972 | Msa0574780:CDS | 40.0% | |
| ATAATGCTCCCAATCATCTC+AGG | + | chr4_1:78532038-78532057 | None:intergenic | 40.0% | |
| !! | GAGATGATTGGGAGCATTAT+TGG | - | chr4_1:78532038-78532057 | Msa0574780:intron | 40.0% |
| ATGAGATCGAGAATTCAGCT+AGG | + | chr4_1:78532124-78532143 | None:intergenic | 40.0% | |
| TCATACAAGCCTGTTAAGCA+TGG | - | chr4_1:78532140-78532159 | Msa0574780:exon | 40.0% | |
| ! | CAGTTTCAGAGGAGTTGATT+TGG | - | chr4_1:78530805-78530824 | Msa0574780:intron | 40.0% |
| ! | AGCTTTTTGATGAGAGCCAT+GGG | + | chr4_1:78530920-78530939 | None:intergenic | 40.0% |
| ! | AAGCTTTTTGATGAGAGCCA+TGG | + | chr4_1:78530921-78530940 | None:intergenic | 40.0% |
| CATCAAAAAGCTTCGCAAAG+CGG | - | chr4_1:78530928-78530947 | Msa0574780:intron | 40.0% | |
| GAATTGGTTGTAGAAAAGGG+AGG | - | chr4_1:78531953-78531972 | Msa0574780:CDS | 40.0% | |
| ATAATGCTCCCAATCATCTC+AGG | + | chr4_1:78532038-78532057 | None:intergenic | 40.0% | |
| !! | GAGATGATTGGGAGCATTAT+TGG | - | chr4_1:78532038-78532057 | Msa0574780:intron | 40.0% |
| ATGAGATCGAGAATTCAGCT+AGG | + | chr4_1:78532124-78532143 | None:intergenic | 40.0% | |
| TCATACAAGCCTGTTAAGCA+TGG | - | chr4_1:78532140-78532159 | Msa0574780:exon | 40.0% | |
| ! | AATTTTGCAGGCAGACGTTG+AGG | - | chr4_1:78530727-78530746 | Msa0574780:CDS | 45.0% |
| GAGCTTAACAAGCTCATCAG+TGG | + | chr4_1:78530849-78530868 | None:intergenic | 45.0% | |
| AAGATGGGTCCTAACAGGTT+CGG | + | chr4_1:78531997-78532016 | None:intergenic | 45.0% | |
| TTACGAAGATGGGTCCTAAC+AGG | + | chr4_1:78532002-78532021 | None:intergenic | 45.0% | |
| AGGTAATGACCGATCATCTC+AGG | + | chr4_1:78532104-78532123 | None:intergenic | 45.0% | |
| AAGCATGGTAGACCTGGTAT+TGG | - | chr4_1:78532155-78532174 | Msa0574780:five_prime_UTR | 45.0% | |
| ! | AATTTTGCAGGCAGACGTTG+AGG | - | chr4_1:78530727-78530746 | Msa0574780:CDS | 45.0% |
| GAGCTTAACAAGCTCATCAG+TGG | + | chr4_1:78530849-78530868 | None:intergenic | 45.0% | |
| AAGATGGGTCCTAACAGGTT+CGG | + | chr4_1:78531997-78532016 | None:intergenic | 45.0% | |
| TTACGAAGATGGGTCCTAAC+AGG | + | chr4_1:78532002-78532021 | None:intergenic | 45.0% | |
| AGGTAATGACCGATCATCTC+AGG | + | chr4_1:78532104-78532123 | None:intergenic | 45.0% | |
| AAGCATGGTAGACCTGGTAT+TGG | - | chr4_1:78532155-78532174 | Msa0574780:five_prime_UTR | 45.0% | |
| GCTCGCTGGGTTTACGATTA+AGG | + | chr4_1:78530591-78530610 | None:intergenic | 50.0% | |
| CTCACCATTGCTGAATTCGC+CGG | + | chr4_1:78530615-78530634 | None:intergenic | 50.0% | |
| AGATGGGTCCTAACAGGTTC+GGG | + | chr4_1:78531996-78532015 | None:intergenic | 50.0% | |
| CCAGGTCTACCATGCTTAAC+AGG | + | chr4_1:78532152-78532171 | None:intergenic | 50.0% | |
| CCTGTTAAGCATGGTAGACC+TGG | - | chr4_1:78532149-78532168 | Msa0574780:five_prime_UTR | 50.0% | |
| GAGTGAGTAGCACCAATACC+AGG | + | chr4_1:78532170-78532189 | None:intergenic | 50.0% | |
| GCTCGCTGGGTTTACGATTA+AGG | + | chr4_1:78530591-78530610 | None:intergenic | 50.0% | |
| CTCACCATTGCTGAATTCGC+CGG | + | chr4_1:78530615-78530634 | None:intergenic | 50.0% | |
| AGATGGGTCCTAACAGGTTC+GGG | + | chr4_1:78531996-78532015 | None:intergenic | 50.0% | |
| CCAGGTCTACCATGCTTAAC+AGG | + | chr4_1:78532152-78532171 | None:intergenic | 50.0% | |
| CCTGTTAAGCATGGTAGACC+TGG | - | chr4_1:78532149-78532168 | Msa0574780:five_prime_UTR | 50.0% | |
| GAGTGAGTAGCACCAATACC+AGG | + | chr4_1:78532170-78532189 | None:intergenic | 50.0% | |
| ATCGTAAACCCAGCGAGCAC+CGG | - | chr4_1:78530593-78530612 | Msa0574780:CDS | 55.0% | |
| !! | AGCACCGGCGAATTCAGCAA+TGG | - | chr4_1:78530608-78530627 | Msa0574780:CDS | 55.0% |
| TCTCTTCTTCGGTACTCCCG+CGG | + | chr4_1:78530771-78530790 | None:intergenic | 55.0% | |
| TCAGTGCTCGTGCTCGTAGA+AGG | - | chr4_1:78530870-78530889 | Msa0574780:intron | 55.0% | |
| GCTCGTAGAAGGTTCCAGAG+AGG | - | chr4_1:78530881-78530900 | Msa0574780:intron | 55.0% | |
| GCTTACGAGTGAGACCTCTC+TGG | + | chr4_1:78530898-78530917 | None:intergenic | 55.0% | |
| AGGTCTCACTCGTAAGCCCA+TGG | - | chr4_1:78530901-78530920 | Msa0574780:intron | 55.0% | |
| !! | TAGAAAAGGGAGGCACCACC+TGG | - | chr4_1:78531963-78531982 | Msa0574780:CDS | 55.0% |
| GTGAGAAGCCCGAACCTGTT+AGG | - | chr4_1:78531985-78532004 | Msa0574780:CDS | 55.0% | |
| ATCGTAAACCCAGCGAGCAC+CGG | - | chr4_1:78530593-78530612 | Msa0574780:CDS | 55.0% | |
| !! | AGCACCGGCGAATTCAGCAA+TGG | - | chr4_1:78530608-78530627 | Msa0574780:CDS | 55.0% |
| TCTCTTCTTCGGTACTCCCG+CGG | + | chr4_1:78530771-78530790 | None:intergenic | 55.0% | |
| TCAGTGCTCGTGCTCGTAGA+AGG | - | chr4_1:78530870-78530889 | Msa0574780:intron | 55.0% | |
| GCTCGTAGAAGGTTCCAGAG+AGG | - | chr4_1:78530881-78530900 | Msa0574780:intron | 55.0% | |
| GCTTACGAGTGAGACCTCTC+TGG | + | chr4_1:78530898-78530917 | None:intergenic | 55.0% | |
| AGGTCTCACTCGTAAGCCCA+TGG | - | chr4_1:78530901-78530920 | Msa0574780:intron | 55.0% | |
| !! | TAGAAAAGGGAGGCACCACC+TGG | - | chr4_1:78531963-78531982 | Msa0574780:CDS | 55.0% |
| GTGAGAAGCCCGAACCTGTT+AGG | - | chr4_1:78531985-78532004 | Msa0574780:CDS | 55.0% | |
| TGAATTCGCCGGTGCTCGCT+GGG | + | chr4_1:78530604-78530623 | None:intergenic | 60.0% | |
| ACAGGTTCGGGCTTCTCACC+AGG | + | chr4_1:78531984-78532003 | None:intergenic | 60.0% | |
| TGAATTCGCCGGTGCTCGCT+GGG | + | chr4_1:78530604-78530623 | None:intergenic | 60.0% | |
| ACAGGTTCGGGCTTCTCACC+AGG | + | chr4_1:78531984-78532003 | None:intergenic | 60.0% | |
| CTGAATTCGCCGGTGCTCGC+TGG | + | chr4_1:78530605-78530624 | None:intergenic | 65.0% | |
| CTTCTTCGGTACTCCCGCGG+CGG | + | chr4_1:78530768-78530787 | None:intergenic | 65.0% | |
| GGTTCGGGCTTCTCACCAGG+TGG | + | chr4_1:78531981-78532000 | None:intergenic | 65.0% | |
| CTGAATTCGCCGGTGCTCGC+TGG | + | chr4_1:78530605-78530624 | None:intergenic | 65.0% | |
| CTTCTTCGGTACTCCCGCGG+CGG | + | chr4_1:78530768-78530787 | None:intergenic | 65.0% | |
| GGTTCGGGCTTCTCACCAGG+TGG | + | chr4_1:78531981-78532000 | None:intergenic | 65.0% | |
| AGATGCAGCAGCCGCCGCCG+CGG | - | chr4_1:78530751-78530770 | Msa0574780:CDS | 75.0% | |
| CTTCGGTACTCCCGCGGCGG+CGG | + | chr4_1:78530765-78530784 | None:intergenic | 75.0% | |
| AGATGCAGCAGCCGCCGCCG+CGG | - | chr4_1:78530751-78530770 | Msa0574780:CDS | 75.0% | |
| CTTCGGTACTCCCGCGGCGG+CGG | + | chr4_1:78530765-78530784 | None:intergenic | 75.0% | |
| ! | GATGCAGCAGCCGCCGCCGC+GGG | - | chr4_1:78530752-78530771 | Msa0574780:CDS | 80.0% |
| ! | GATGCAGCAGCCGCCGCCGC+GGG | - | chr4_1:78530752-78530771 | Msa0574780:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 78530576 | 78532193 | 78530576 | ID=Msa0574780;Name=Msa0574780 |
| chr4_1 | mRNA | 78530576 | 78532193 | 78530576 | ID=Msa0574780-mRNA-1;Parent=Msa0574780;Name=Msa0574780-mRNA-1;_AED=0.23;_eAED=0.23;_QI=51|0.5|0.66|1|0.5|0.33|3|0|139 |
| chr4_1 | exon | 78530576 | 78530776 | 78530576 | ID=Msa0574780-mRNA-1:exon:27867;Parent=Msa0574780-mRNA-1 |
| chr4_1 | exon | 78531820 | 78532032 | 78531820 | ID=Msa0574780-mRNA-1:exon:27866;Parent=Msa0574780-mRNA-1 |
| chr4_1 | exon | 78532140 | 78532193 | 78532140 | ID=Msa0574780-mRNA-1:exon:27865;Parent=Msa0574780-mRNA-1 |
| chr4_1 | five_prime_UTR | 78532143 | 78532193 | 78532143 | ID=Msa0574780-mRNA-1:five_prime_utr;Parent=Msa0574780-mRNA-1 |
| chr4_1 | CDS | 78532140 | 78532142 | 78532140 | ID=Msa0574780-mRNA-1:cds;Parent=Msa0574780-mRNA-1 |
| chr4_1 | CDS | 78531820 | 78532032 | 78531820 | ID=Msa0574780-mRNA-1:cds;Parent=Msa0574780-mRNA-1 |
| chr4_1 | CDS | 78530576 | 78530776 | 78530576 | ID=Msa0574780-mRNA-1:cds;Parent=Msa0574780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
