AlfalfaGEDB | Msa0574780

M. sativa cultivar zhongmu-4 / Msa0574780

KEGG: K02958
GO: -
PFAM: PF00203.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574780	XP_003630927.1	93.919	148	0	1	1	139	1	148	6.68e-93	275

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574780	sp\|P31674\|RS15_ORYSJ	83.784	148	15	1	1	139	1	148	1.82e-86	251

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574780	G7LAJ5	93.919	148	0	1	1	139	1	148	3.19e-93	275

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa0574780	0.819978	8.741568e-53	-8.615850e-47
Msa0003330	Msa0574780	0.856495	3.095610e-62	-8.615850e-47
Msa0027590	Msa0574780	0.842189	3.010426e-58	-8.615850e-47
Msa0042510	Msa0574780	0.885803	5.935442e-72	-8.615850e-47
Msa0071640	Msa0574780	0.812018	5.234309e-51	-8.615850e-47
Msa0079560	Msa0574780	0.892490	1.512696e-74	-8.615850e-47
Msa0086160	Msa0574780	0.840748	7.213239e-58	-8.615850e-47
Msa0098210	Msa0574780	0.807827	4.179041e-50	-8.615850e-47
Msa0123290	Msa0574780	0.827027	1.961965e-54	-8.615850e-47
Msa0127180	Msa0574780	0.819700	1.012072e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574780	MtrunA17_Chr8g0391601	93.919	148	0	1	1	139	1	148	6.15e-97	275
Msa0574780	MtrunA17_Chr1g0184681	89.189	148	5	2	1	139	1	146	4.41e-90	258
Msa0574780	MtrunA17_Chr4g0038481	87.162	148	8	2	1	139	1	146	9.48e-79	229

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574780	AT5G09500.1	82.432	148	13	2	1	139	1	144	1.13e-81	237
Msa0574780	AT5G09510.1	85.811	148	10	2	1	139	1	146	3.71e-79	231
Msa0574780	AT1G04270.1	85.811	148	10	2	1	139	1	146	3.88e-79	231
Msa0574780	AT1G04270.2	85.714	147	11	2	1	139	1	145	1.94e-78	229
Msa0574780	AT5G09490.1	77.027	148	23	2	1	139	1	146	2.61e-77	226
Msa0574780	AT5G43640.1	80.420	143	19	1	6	139	1	143	2.63e-70	208
Msa0574780	AT5G09510.2	87.500	112	5	1	37	139	1	112	3.08e-58	176
Msa0574780	AT5G63070.1	61.224	147	46	1	1	136	1	147	7.33e-58	177
Msa0574780	AT1G33850.1	83.607	61	10	0	12	72	7	67	7.56e-20	77.8

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Find 42 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATGGGTCCTAACAGGTT+CGG	0.450751	4_1:+78530753	None:intergenic
AAGCATGGTAGACCTGGTAT+TGG	0.586812	4_1:-78530592	Msa0574780:CDS
AATGATCATGTTACGAAGAT+GGG	0.516658	4_1:+78530738	None:intergenic
AGATGCAGCAGCCGCCGCCG+CGG	0.579389	4_1:-78531996	Msa0574780:CDS
AGATGGGTCCTAACAGGTTC+GGG	0.405557	4_1:+78530754	None:intergenic
AGCACCGGCGAATTCAGCAA+TGG	0.648064	4_1:-78532139	Msa0574780:intron
AGCATTATTGGAGTGTACAA+TGG	0.558872	4_1:-78530697	Msa0574780:CDS
AGGTAATGACCGATCATCTC+AGG	0.492365	4_1:+78530646	None:intergenic
AGGTCTCACTCGTAAGCCCA+TGG	0.623580	4_1:-78531846	Msa0574780:CDS
ATAATGCTCCCAATCATCTC+AGG	0.528225	4_1:+78530712	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCCGATAGAATCTAACA+TGG	-	chr4_1:78530657-78530676	Msa0574780:CDS	30.0%
TTCTTGAATGTTCTCTTCTT+CGG	+	chr4_1:78530782-78530801	None:intergenic	30.0%
AAGGCATATAACCTTCAAAA+TGG	+	chr4_1:78531475-78531494	None:intergenic	30.0%
CTTACTGAATAGCGATATTT+AGG	-	chr4_1:78531795-78531814	Msa0574780:intron	30.0%
GAATAGCGATATTTAGGTAT+AGG	-	chr4_1:78531801-78531820	Msa0574780:intron	30.0%
TTGTGAATTGGTTGTAGAAA+AGG	-	chr4_1:78531949-78531968	Msa0574780:CDS	30.0%
TGTGAATTGGTTGTAGAAAA+GGG	-	chr4_1:78531950-78531969	Msa0574780:CDS	30.0%
AATGATCATGTTACGAAGAT+GGG	+	chr4_1:78532012-78532031	None:intergenic	30.0%
CGATTAAGGAGAACAAAATT+TGG	+	chr4_1:78530577-78530596	None:intergenic	30.0%
ATTTCCGATAGAATCTAACA+TGG	-	chr4_1:78530657-78530676	Msa0574780:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	78530576	78532193	78530576	ID=Msa0574780;Name=Msa0574780
chr4_1	mRNA	78530576	78532193	78530576	ID=Msa0574780-mRNA-1;Parent=Msa0574780;Name=Msa0574780-mRNA-1;_AED=0.23;_eAED=0.23;_QI=51\|0.5\|0.66\|1\|0.5\|0.33\|3\|0\|139
chr4_1	exon	78530576	78530776	78530576	ID=Msa0574780-mRNA-1:exon:27867;Parent=Msa0574780-mRNA-1
chr4_1	exon	78531820	78532032	78531820	ID=Msa0574780-mRNA-1:exon:27866;Parent=Msa0574780-mRNA-1
chr4_1	exon	78532140	78532193	78532140	ID=Msa0574780-mRNA-1:exon:27865;Parent=Msa0574780-mRNA-1
chr4_1	five_prime_UTR	78532143	78532193	78532143	ID=Msa0574780-mRNA-1:five_prime_utr;Parent=Msa0574780-mRNA-1
chr4_1	CDS	78532140	78532142	78532140	ID=Msa0574780-mRNA-1:cds;Parent=Msa0574780-mRNA-1
chr4_1	CDS	78531820	78532032	78531820	ID=Msa0574780-mRNA-1:cds;Parent=Msa0574780-mRNA-1
chr4_1	CDS	78530576	78530776	78530576	ID=Msa0574780-mRNA-1:cds;Parent=Msa0574780-mRNA-1

Gene Sequence

>Msa0574780

ATGGCAGACGTTGAGGTAGATGCAGCAGCCGCCGCCGCGGGAGTACCGAAGAAGAGAACATTCAAGAAGTTCAGTTTCAGAGGAGTTGATTTGGATGCACTTCTTGACATGTCCACTGATGAGCTTGTTAAGCTCTTCAGTGCTCGTGCTCGTAGAAGGTTCCAGAGAGGTCTCACTCGTAAGCCCATGGCTCTCATCAAAAAGCTTCGCAAAGCGCCCGAACCTGTTAGGACCCATCTTCGTAACATGATCATTGTACCTGAGATGATTGGGAGCATTATTGGAGTGTACAATGGGAAGACCTTTAACCAAGTTGAAATCAAACCTGAGATGATCGGTCATTACCTAGCTGAATTCTCGATCTCATACAAGCCTGTTAAGCATGGTAGACCTGGTATTGGTGCTACTCACTCCTCC

Protein sequence

>Msa0574780

MADVEVDAAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSS