Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407550 | XP_003630927.1 | 94.156 | 154 | 0 | 1 | 1 | 145 | 1 | 154 | 3.68e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407550 | sp|P31674|RS15_ORYSJ | 84.416 | 154 | 15 | 1 | 1 | 145 | 1 | 154 | 5.80e-91 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407550 | G7LAJ5 | 94.156 | 154 | 0 | 1 | 1 | 145 | 1 | 154 | 1.76e-97 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa1407550 | 0.850868 | 1.285635e-60 | -8.615850e-47 |
| Msa0003030 | Msa1407550 | 0.813689 | 2.254532e-51 | -8.615850e-47 |
| Msa0003330 | Msa1407550 | 0.866340 | 3.062586e-65 | -8.615850e-47 |
| Msa0027590 | Msa1407550 | 0.825153 | 5.473560e-54 | -8.615850e-47 |
| Msa0042510 | Msa1407550 | 0.894154 | 3.219733e-75 | -8.615850e-47 |
| Msa0071640 | Msa1407550 | 0.803088 | 4.119562e-49 | -8.615850e-47 |
| Msa0079560 | Msa1407550 | 0.900168 | 9.595048e-78 | -8.615850e-47 |
| Msa0086160 | Msa1407550 | 0.851625 | 7.858524e-61 | -8.615850e-47 |
| Msa0098210 | Msa1407550 | 0.805564 | 1.256213e-49 | -8.615850e-47 |
| Msa0116600 | Msa1407550 | 0.803039 | 4.217047e-49 | -8.615850e-47 |
| Msa1351020 | Msa1407550 | 0.910055 | 2.873484e-82 | -8.615850e-47 |
| Msa1363930 | Msa1407550 | 0.832196 | 1.084964e-55 | -8.615850e-47 |
| Msa1366540 | Msa1407550 | 0.857210 | 1.905758e-62 | -8.615850e-47 |
| Msa1385480 | Msa1407550 | 0.885212 | 9.879067e-72 | -8.615850e-47 |
| Msa1387750 | Msa1407550 | 0.884022 | 2.734488e-71 | -8.615850e-47 |
| Msa1390760 | Msa1407550 | 0.891659 | 3.245920e-74 | -8.615850e-47 |
| Msa1403520 | Msa1407550 | 0.828812 | 7.300560e-55 | -8.615850e-47 |
| Msa1407550 | Msa1413570 | 0.921077 | 5.675622e-88 | -8.615850e-47 |
| Msa1407550 | Msa1421510 | 0.807553 | 4.777324e-50 | -8.615850e-47 |
| Msa1407550 | Msa1424570 | 0.803369 | 3.603431e-49 | -8.615850e-47 |
| Msa1407550 | Msa1432310 | 0.901781 | 1.892405e-78 | -8.615850e-47 |
| Msa1407550 | Msa1441220 | -0.806903 | 6.562636e-50 | -8.615850e-47 |
| Msa1407550 | Msa1446410 | 0.829779 | 4.251861e-55 | -8.615850e-47 |
| Msa1407550 | Msa1446510 | 0.840327 | 9.294307e-58 | -8.615850e-47 |
| Msa1407550 | Msa1450560 | 0.850620 | 1.509847e-60 | -8.615850e-47 |
| Msa1407550 | Msa1453530 | 0.830007 | 3.741380e-55 | -8.615850e-47 |
| Msa1407550 | Msa1462580 | 0.836278 | 1.027437e-56 | -8.615850e-47 |
| Msa1407550 | Msa1463510 | 0.810535 | 1.098453e-50 | -8.615850e-47 |
| Msa1407550 | Msa1463570 | 0.872705 | 2.589044e-67 | -8.615850e-47 |
| Msa1407550 | Msa1465700 | 0.916065 | 2.787563e-85 | -8.615850e-47 |
| Msa0602900 | Msa1407550 | 0.889183 | 3.042729e-73 | -8.615850e-47 |
| Msa0605600 | Msa1407550 | 0.834284 | 3.276045e-56 | -8.615850e-47 |
| Msa0605890 | Msa1407550 | 0.865019 | 7.998032e-65 | -8.615850e-47 |
| Msa0609120 | Msa1407550 | 0.863320 | 2.708085e-64 | -8.615850e-47 |
| Msa0619230 | Msa1407550 | 0.891620 | 3.363921e-74 | -8.615850e-47 |
| Msa0621190 | Msa1407550 | 0.871970 | 4.553198e-67 | -8.615850e-47 |
| Msa0643960 | Msa1407550 | 0.884740 | 1.481697e-71 | -8.615850e-47 |
| Msa0649890 | Msa1407550 | 0.847303 | 1.259099e-59 | -8.615850e-47 |
| Msa0656450 | Msa1407550 | 0.921513 | 3.248400e-88 | -8.615850e-47 |
| Msa0663400 | Msa1407550 | 0.812537 | 4.032677e-51 | -8.615850e-47 |
| Msa0686550 | Msa1407550 | 0.851798 | 7.015942e-61 | -8.615850e-47 |
| Msa0691760 | Msa1407550 | 0.872297 | 3.542828e-67 | -8.615850e-47 |
| Msa0694400 | Msa1407550 | 0.886804 | 2.486496e-72 | -8.615850e-47 |
| Msa0700370 | Msa1407550 | 0.878649 | 2.367607e-69 | -8.615850e-47 |
| Msa0704860 | Msa1407550 | 0.827482 | 1.526796e-54 | -8.615850e-47 |
| Msa0708630 | Msa1407550 | 0.856092 | 4.063832e-62 | -8.615850e-47 |
| Msa0741510 | Msa1407550 | 0.811308 | 7.470399e-51 | -8.615850e-47 |
| Msa0752240 | Msa1407550 | 0.808639 | 2.805180e-50 | -8.615850e-47 |
| Msa0790450 | Msa1407550 | 0.847606 | 1.039943e-59 | -8.615850e-47 |
| Msa0798590 | Msa1407550 | 0.804166 | 2.461405e-49 | -8.615850e-47 |
| Msa0826400 | Msa1407550 | 0.819895 | 9.135468e-53 | -8.615850e-47 |
| Msa0834220 | Msa1407550 | 0.840558 | 8.089834e-58 | -8.615850e-47 |
| Msa0123290 | Msa1407550 | 0.843519 | 1.333282e-58 | -8.615850e-47 |
| Msa0127180 | Msa1407550 | 0.821247 | 4.469854e-53 | -8.615850e-47 |
| Msa0127230 | Msa1407550 | 0.893717 | 4.846216e-75 | -8.615850e-47 |
| Msa0128330 | Msa1407550 | 0.879202 | 1.510832e-69 | -8.615850e-47 |
| Msa0132460 | Msa1407550 | 0.854525 | 1.161444e-61 | -8.615850e-47 |
| Msa0146910 | Msa1407550 | 0.810943 | 8.964433e-51 | -8.615850e-47 |
| Msa0167860 | Msa1407550 | 0.893985 | 3.771278e-75 | -8.615850e-47 |
| Msa0168320 | Msa1407550 | 0.871203 | 8.172957e-67 | -8.615850e-47 |
| Msa0172300 | Msa1407550 | 0.801955 | 7.051256e-49 | -8.615850e-47 |
| Msa0174580 | Msa1407550 | 0.871622 | 5.938281e-67 | -8.615850e-47 |
| Msa0182050 | Msa1407550 | 0.858720 | 6.785000e-63 | -8.615850e-47 |
| Msa0182100 | Msa1407550 | 0.902829 | 6.494075e-79 | -8.615850e-47 |
| Msa0188740 | Msa1407550 | 0.834865 | 2.340676e-56 | -8.615850e-47 |
| Msa0191450 | Msa1407550 | 0.822661 | 2.102364e-53 | -8.615850e-47 |
| Msa0191550 | Msa1407550 | 0.841700 | 4.052900e-58 | -8.615850e-47 |
| Msa0192300 | Msa1407550 | 0.887363 | 1.524051e-72 | -8.615850e-47 |
| Msa0195030 | Msa1407550 | 0.807180 | 5.733800e-50 | -8.615850e-47 |
| Msa0219090 | Msa1407550 | 0.806954 | 6.399675e-50 | -8.615850e-47 |
| Msa0233550 | Msa1407550 | 0.883499 | 4.261115e-71 | -8.615850e-47 |
| Msa0234850 | Msa1407550 | 0.824903 | 6.272735e-54 | -8.615850e-47 |
| Msa0234900 | Msa1407550 | 0.814114 | 1.816449e-51 | -8.615850e-47 |
| Msa0237180 | Msa1407550 | 0.807649 | 4.558381e-50 | -8.615850e-47 |
| Msa1227350 | Msa1407550 | 0.832577 | 8.733847e-56 | -8.615850e-47 |
| Msa1235950 | Msa1407550 | 0.920382 | 1.373304e-87 | -8.615850e-47 |
| Msa1235980 | Msa1407550 | 0.924716 | 4.855817e-90 | -8.615850e-47 |
| Msa1237040 | Msa1407550 | 0.874449 | 6.696860e-68 | -8.615850e-47 |
| Msa1258540 | Msa1407550 | 0.833239 | 5.977935e-56 | -8.615850e-47 |
| Msa1269250 | Msa1407550 | -0.806755 | 7.050553e-50 | -8.615850e-47 |
| Msa1270710 | Msa1407550 | 0.803539 | 3.322590e-49 | -8.615850e-47 |
| Msa1284800 | Msa1407550 | 0.834889 | 2.308422e-56 | -8.615850e-47 |
| Msa1296090 | Msa1407550 | 0.803507 | 3.372699e-49 | -8.615850e-47 |
| Msa1316100 | Msa1407550 | 0.868344 | 7.001909e-66 | -8.615850e-47 |
| Msa1317390 | Msa1407550 | 0.913799 | 4.045487e-84 | -8.615850e-47 |
| Msa1329930 | Msa1407550 | 0.802525 | 5.383927e-49 | -8.615850e-47 |
| Msa1333370 | Msa1407550 | 0.807521 | 4.853814e-50 | -8.615850e-47 |
| Msa1341780 | Msa1407550 | 0.805552 | 1.263110e-49 | -8.615850e-47 |
| Msa0371490 | Msa1407550 | 0.866354 | 3.031748e-65 | -8.615850e-47 |
| Msa0373350 | Msa1407550 | 0.861256 | 1.165990e-63 | -8.615850e-47 |
| Msa0376850 | Msa1407550 | 0.869690 | 2.562534e-66 | -8.615850e-47 |
| Msa0377370 | Msa1407550 | 0.841152 | 5.649714e-58 | -8.615850e-47 |
| Msa0377520 | Msa1407550 | 0.818117 | 2.317415e-52 | -8.615850e-47 |
| Msa0382670 | Msa1407550 | 0.860548 | 1.913145e-63 | -8.615850e-47 |
| Msa0383690 | Msa1407550 | 0.830493 | 2.846989e-55 | -8.615850e-47 |
| Msa0387290 | Msa1407550 | 0.846467 | 2.132543e-59 | -8.615850e-47 |
| Msa0388520 | Msa1407550 | 0.824116 | 9.610242e-54 | -8.615850e-47 |
| Msa0416470 | Msa1407550 | 0.864460 | 1.197046e-64 | -8.615850e-47 |
| Msa0421920 | Msa1407550 | 0.824672 | 7.108894e-54 | -8.615850e-47 |
| Msa0426090 | Msa1407550 | 0.825143 | 5.503654e-54 | -8.615850e-47 |
| Msa0426250 | Msa1407550 | 0.822084 | 2.861936e-53 | -8.615850e-47 |
| Msa0426940 | Msa1407550 | 0.823107 | 1.655159e-53 | -8.615850e-47 |
| Msa0433010 | Msa1407550 | 0.830966 | 2.180626e-55 | -8.615850e-47 |
| Msa0450150 | Msa1407550 | 0.811321 | 7.423529e-51 | -8.615850e-47 |
| Msa0467740 | Msa1407550 | 0.805358 | 1.387102e-49 | -8.615850e-47 |
| Msa0472480 | Msa1407550 | 0.821995 | 3.001802e-53 | -8.615850e-47 |
| Msa0482560 | Msa1407550 | 0.814414 | 1.559575e-51 | -8.615850e-47 |
| Msa0979820 | Msa1407550 | 0.813589 | 2.370810e-51 | -8.615850e-47 |
| Msa1068660 | Msa1407550 | 0.823015 | 1.738932e-53 | -8.615850e-47 |
| Msa1080390 | Msa1407550 | 0.801055 | 1.078527e-48 | -8.615850e-47 |
| Msa1082050 | Msa1407550 | 0.885476 | 7.866718e-72 | -8.615850e-47 |
| Msa1085850 | Msa1407550 | 0.825189 | 5.369508e-54 | -8.615850e-47 |
| Msa1093500 | Msa1407550 | 0.842700 | 2.203067e-58 | -8.615850e-47 |
| Msa0239420 | Msa1407550 | 0.877668 | 5.225959e-69 | -8.615850e-47 |
| Msa0256350 | Msa1407550 | 0.829166 | 5.992745e-55 | -8.615850e-47 |
| Msa0270160 | Msa1407550 | 0.860003 | 2.796610e-63 | -8.615850e-47 |
| Msa0274940 | Msa1407550 | 0.831160 | 1.954147e-55 | -8.615850e-47 |
| Msa0277600 | Msa1407550 | 0.879085 | 1.661979e-69 | -8.615850e-47 |
| Msa0278540 | Msa1407550 | 0.810451 | 1.145383e-50 | -8.615850e-47 |
| Msa0281370 | Msa1407550 | 0.830536 | 2.778555e-55 | -8.615850e-47 |
| Msa0301250 | Msa1407550 | 0.897288 | 1.626713e-76 | -8.615850e-47 |
| Msa0313060 | Msa1407550 | 0.888153 | 7.600933e-73 | -8.615850e-47 |
| Msa0315430 | Msa1407550 | 0.869019 | 4.235802e-66 | -8.615850e-47 |
| Msa0315660 | Msa1407550 | 0.807428 | 5.079911e-50 | -8.615850e-47 |
| Msa1116940 | Msa1407550 | 0.805631 | 1.215823e-49 | -8.615850e-47 |
| Msa1124980 | Msa1407550 | 0.803733 | 3.028555e-49 | -8.615850e-47 |
| Msa1126690 | Msa1407550 | 0.854297 | 1.351787e-61 | -8.615850e-47 |
| Msa1130680 | Msa1407550 | 0.820244 | 7.598772e-53 | -8.615850e-47 |
| Msa1144630 | Msa1407550 | 0.831145 | 1.970926e-55 | -8.615850e-47 |
| Msa1156830 | Msa1407550 | 0.811789 | 5.871950e-51 | -8.615850e-47 |
| Msa1165210 | Msa1407550 | 0.838709 | 2.447915e-57 | -8.615850e-47 |
| Msa1165700 | Msa1407550 | 0.842627 | 2.303715e-58 | -8.615850e-47 |
| Msa1180000 | Msa1407550 | 0.821671 | 3.566919e-53 | -8.615850e-47 |
| Msa1213850 | Msa1407550 | 0.838099 | 3.515645e-57 | -8.615850e-47 |
| Msa0485220 | Msa1407550 | 0.852540 | 4.316670e-61 | -8.615850e-47 |
| Msa0511760 | Msa1407550 | 0.893936 | 3.948685e-75 | -8.615850e-47 |
| Msa0516830 | Msa1407550 | 0.870815 | 1.097112e-66 | -8.615850e-47 |
| Msa0521730 | Msa1407550 | 0.819478 | 1.137104e-52 | -8.615850e-47 |
| Msa0547920 | Msa1407550 | 0.884897 | 1.294685e-71 | -8.615850e-47 |
| Msa0552510 | Msa1407550 | 0.802056 | 6.722901e-49 | -8.615850e-47 |
| Msa0573550 | Msa1407550 | 0.873839 | 1.077203e-67 | -8.615850e-47 |
| Msa0574780 | Msa1407550 | 0.958376 | 2.745124e-116 | -8.615850e-47 |
| Msa0578010 | Msa1407550 | 0.897712 | 1.077660e-76 | -8.615850e-47 |
| Msa0579830 | Msa1407550 | 0.832160 | 1.107770e-55 | -8.615850e-47 |
| Msa0585570 | Msa1407550 | 0.800299 | 1.538086e-48 | -8.615850e-47 |
| Msa0597240 | Msa1407550 | 0.829235 | 5.765312e-55 | -8.615850e-47 |
| Msa0902730 | Msa1407550 | 0.846267 | 2.418200e-59 | -8.615850e-47 |
| Msa0929680 | Msa1407550 | 0.822337 | 2.499613e-53 | -8.615850e-47 |
| Msa0929700 | Msa1407550 | 0.879169 | 1.551663e-69 | -8.615850e-47 |
| Msa0930100 | Msa1407550 | 0.809015 | 2.331838e-50 | -8.615850e-47 |
| Msa0930360 | Msa1407550 | 0.875494 | 2.948564e-68 | -8.615850e-47 |
| Msa0930790 | Msa1407550 | 0.859660 | 3.546925e-63 | -8.615850e-47 |
| Msa0930890 | Msa1407550 | 0.902408 | 9.991216e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407550 | MtrunA17_Chr8g0391601 | 94.156 | 154 | 0 | 1 | 1 | 145 | 1 | 154 | 3.38e-101 | 286 |
| Msa1407550 | MtrunA17_Chr1g0184681 | 89.610 | 154 | 5 | 2 | 1 | 145 | 1 | 152 | 1.77e-94 | 269 |
| Msa1407550 | MtrunA17_Chr4g0038481 | 87.662 | 154 | 8 | 2 | 1 | 145 | 1 | 152 | 3.93e-83 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407550 | AT5G09500.1 | 83.117 | 154 | 13 | 2 | 1 | 145 | 1 | 150 | 3.94e-86 | 248 |
| Msa1407550 | AT1G04270.1 | 86.364 | 154 | 10 | 2 | 1 | 145 | 1 | 152 | 1.14e-83 | 242 |
| Msa1407550 | AT5G09510.1 | 86.364 | 154 | 10 | 2 | 1 | 145 | 1 | 152 | 1.21e-83 | 242 |
| Msa1407550 | AT1G04270.2 | 86.275 | 153 | 11 | 2 | 1 | 145 | 1 | 151 | 8.05e-83 | 240 |
| Msa1407550 | AT5G09490.1 | 77.922 | 154 | 23 | 2 | 1 | 145 | 1 | 152 | 1.05e-81 | 237 |
| Msa1407550 | AT5G43640.1 | 81.208 | 149 | 19 | 1 | 6 | 145 | 1 | 149 | 7.28e-75 | 220 |
| Msa1407550 | AT5G09510.2 | 88.136 | 118 | 5 | 1 | 37 | 145 | 1 | 118 | 7.77e-63 | 188 |
| Msa1407550 | AT5G63070.1 | 60.000 | 160 | 49 | 2 | 1 | 145 | 1 | 160 | 1.67e-60 | 184 |
| Msa1407550 | AT1G33850.1 | 83.607 | 61 | 10 | 0 | 12 | 72 | 7 | 67 | 9.93e-20 | 77.8 |
Find 44 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGCTAGGGTTTACGATTA+AGG | 0.214453 | tig0023317:+11027 | None:intergenic |
| TTTGATTTCAACTTGGTTAA+AGG | 0.236449 | tig0023317:+9542 | None:intergenic |
| GAGATGATTGGGAGCATTAT+TGG | 0.247005 | tig0023317:-9582 | Msa1407550:CDS |
| CAGTTTCAGAGGAGTTGATT+TGG | 0.292075 | tig0023317:-10815 | Msa1407550:CDS |
| CCAGGTCTACCATGCTTAAC+AGG | 0.341486 | tig0023317:+9471 | None:intergenic |
| TGAATTCGCCGGTGCTCGCT+AGG | 0.359166 | tig0023317:+11013 | None:intergenic |
| TCAGTGCTCGTGCTCGTAGA+AGG | 0.367007 | tig0023317:-10750 | Msa1407550:CDS |
| TTCTTGAATGTTCTCTTCTT+CGG | 0.377124 | tig0023317:+10841 | None:intergenic |
| AGATGGGTCCTAACAGGTTC+GGG | 0.405557 | tig0023317:+9627 | None:intergenic |
| GTGAGAAGCCCGAACCTGTT+AGG | 0.409377 | tig0023317:-9635 | Msa1407550:intron |
| GATGCAGCAGCCGCCGCCGC+GGG | 0.422266 | tig0023317:-10868 | Msa1407550:CDS |
| TTACGAAGATGGGTCCTAAC+AGG | 0.435557 | tig0023317:+9621 | None:intergenic |
| AAGATGGGTCCTAACAGGTT+CGG | 0.450751 | tig0023317:+9626 | None:intergenic |
| CAATGATCATGTTACGAAGA+TGG | 0.465315 | tig0023317:+9610 | None:intergenic |
| ATCATTGTACCTGAGATGAT+TGG | 0.468347 | tig0023317:-9594 | Msa1407550:CDS |
| TTCAAGAAGTTCAGTTTCAG+AGG | 0.481387 | tig0023317:-10826 | Msa1407550:CDS |
| AGGTAATGACCGATCATCTC+AGG | 0.492365 | tig0023317:+9519 | None:intergenic |
| CCTGTTAAGCATGGTAGACC+TGG | 0.509940 | tig0023317:-9471 | Msa1407550:CDS |
| AATGATCATGTTACGAAGAT+GGG | 0.516658 | tig0023317:+9611 | None:intergenic |
| GCATTATTGGAGTGTACAAT+GGG | 0.517140 | tig0023317:-9569 | Msa1407550:CDS |
| CTTCGGTACTCCCGCGGCGG+CGG | 0.518043 | tig0023317:+10858 | None:intergenic |
| TTGGTGCTACTCACTCCTCC+AGG | 0.521787 | tig0023317:-9446 | Msa1407550:CDS |
| ATAATGCTCCCAATCATCTC+AGG | 0.528225 | tig0023317:+9585 | None:intergenic |
| TCATTGTACCTGAGATGATT+GGG | 0.539509 | tig0023317:-9593 | Msa1407550:CDS |
| GCTTACGAGTGAGACCTCTC+TGG | 0.541580 | tig0023317:+10725 | None:intergenic |
| TCTCAGGTTTGATTTCAACT+TGG | 0.546765 | tig0023317:+9535 | None:intergenic |
| CTCACCATTGCTGAATTCGC+CGG | 0.552468 | tig0023317:+11002 | None:intergenic |
| AGCATTATTGGAGTGTACAA+TGG | 0.558872 | tig0023317:-9570 | Msa1407550:CDS |
| TCACTTGAGAGGAATGAACC+TGG | 0.566509 | tig0023317:+9428 | None:intergenic |
| AGATGCAGCAGCCGCCGCCG+CGG | 0.579389 | tig0023317:-10869 | Msa1407550:CDS |
| GAGTGAGTAGCACCAATACC+AGG | 0.584094 | tig0023317:+9453 | None:intergenic |
| GAAATCAAACCTGAGATGAT+CGG | 0.585387 | tig0023317:-9528 | Msa1407550:CDS |
| AAGCATGGTAGACCTGGTAT+TGG | 0.586812 | tig0023317:-9465 | Msa1407550:CDS |
| TCATACAAGCCTGTTAAGCA+TGG | 0.604339 | tig0023317:-9480 | Msa1407550:CDS |
| TCGTAAACCCTAGCGAGCAC+CGG | 0.606412 | tig0023317:-11021 | Msa1407550:five_prime_UTR |
| GAGCTTAACAAGCTCATCAG+TGG | 0.607114 | tig0023317:+10774 | None:intergenic |
| AGGTCTCACTCGTAAGCCCA+TGG | 0.623580 | tig0023317:-10719 | Msa1407550:CDS |
| AACAAGGTGATTCACTTGAG+AGG | 0.631770 | tig0023317:+9417 | None:intergenic |
| AGCACCGGCGAATTCAGCAA+TGG | 0.648064 | tig0023317:-11006 | Msa1407550:intron |
| ATGAGATCGAGAATTCAGCT+AGG | 0.682732 | tig0023317:+9499 | None:intergenic |
| TCTCTTCTTCGGTACTCCCG+CGG | 0.697626 | tig0023317:+10852 | None:intergenic |
| CTTCTTCGGTACTCCCGCGG+CGG | 0.700206 | tig0023317:+10855 | None:intergenic |
| CTTGAGAGGAATGAACCTGG+AGG | 0.737810 | tig0023317:+9431 | None:intergenic |
| GCTCGTAGAAGGTTCCAGAG+AGG | 0.763484 | tig0023317:-10739 | Msa1407550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTACTATTTTACAAATTTA+AGG | + | tig0023317:9934-9953 | None:intergenic | 10.0% |
| !! | TAAATTTGTAAAATAGTAAT+TGG | - | tig0023317:9934-9953 | Msa1407550:intron | 10.0% |
| !!! | TTTGTTATTTTTTTAATTTG+AGG | - | tig0023317:10183-10202 | Msa1407550:intron | 10.0% |
| !!! | ATTACTATTTTACAAATTTA+AGG | + | tig0023317:9934-9953 | None:intergenic | 10.0% |
| !! | TAAATTTGTAAAATAGTAAT+TGG | - | tig0023317:9934-9953 | Msa1407550:intron | 10.0% |
| !!! | TTTGTTATTTTTTTAATTTG+AGG | - | tig0023317:10183-10202 | Msa1407550:intron | 10.0% |
| !! | AAATCAAAATCAAATTCAAT+CGG | + | tig0023317:9540-9559 | None:intergenic | 15.0% |
| !!! | TTTGATTTTGATTTTGAATT+TGG | - | tig0023317:9546-9565 | Msa1407550:CDS | 15.0% |
| !! | ATTACTATTATGCAAATTTA+AGG | + | tig0023317:10249-10268 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTGTTCAATTTAA+GGG | + | tig0023317:10277-10296 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGTGTTCAATTTA+AGG | + | tig0023317:10278-10297 | None:intergenic | 15.0% |
| !!! | TTGAACACTTTTTTTTTTTT+TGG | - | tig0023317:10282-10301 | Msa1407550:intron | 15.0% |
| !!! | TGAACACTTTTTTTTTTTTT+GGG | - | tig0023317:10283-10302 | Msa1407550:intron | 15.0% |
| !!! | GAAGTTTTTATTTATTTTGT+TGG | - | tig0023317:10356-10375 | Msa1407550:intron | 15.0% |
| !!! | TTTGTTATTCTTTTATTTAG+TGG | - | tig0023317:10420-10439 | Msa1407550:intron | 15.0% |
| !!! | ATTGTTATAATTTTGTGAAT+TGG | - | tig0023317:10784-10803 | Msa1407550:CDS | 15.0% |
| !! | AAATCAAAATCAAATTCAAT+CGG | + | tig0023317:9540-9559 | None:intergenic | 15.0% |
| !!! | TTTGATTTTGATTTTGAATT+TGG | - | tig0023317:9546-9565 | Msa1407550:CDS | 15.0% |
| !! | ATTACTATTATGCAAATTTA+AGG | + | tig0023317:10249-10268 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTGTTCAATTTAA+GGG | + | tig0023317:10277-10296 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGTGTTCAATTTA+AGG | + | tig0023317:10278-10297 | None:intergenic | 15.0% |
| !!! | TTGAACACTTTTTTTTTTTT+TGG | - | tig0023317:10282-10301 | Msa1407550:intron | 15.0% |
| !!! | TGAACACTTTTTTTTTTTTT+GGG | - | tig0023317:10283-10302 | Msa1407550:intron | 15.0% |
| !!! | GAAGTTTTTATTTATTTTGT+TGG | - | tig0023317:10356-10375 | Msa1407550:intron | 15.0% |
| !!! | TTTGTTATTCTTTTATTTAG+TGG | - | tig0023317:10420-10439 | Msa1407550:intron | 15.0% |
| !!! | ATTGTTATAATTTTGTGAAT+TGG | - | tig0023317:10784-10803 | Msa1407550:CDS | 15.0% |
| !!! | GTTAGTATTTTGCATATTAA+AGG | + | tig0023317:9902-9921 | None:intergenic | 20.0% |
| !! | ATATGCAAAATACTAACAAT+TGG | - | tig0023317:9905-9924 | Msa1407550:intron | 20.0% |
| !! | TATGCAAAATACTAACAATT+GGG | - | tig0023317:9906-9925 | Msa1407550:intron | 20.0% |
| !!! | AGGACTAACATTAAAAATTT+TGG | + | tig0023317:10458-10477 | None:intergenic | 20.0% |
| !!! | ATTTAACACTACCATTTTAA+AGG | - | tig0023317:10547-10566 | Msa1407550:intron | 20.0% |
| !!! | TGGTGGTTTTTTAAATTTAA+AGG | - | tig0023317:10683-10702 | Msa1407550:intron | 20.0% |
| !!! | TTTGTTAATTTGTGAATTTG+AGG | - | tig0023317:10711-10730 | Msa1407550:CDS | 20.0% |
| !!! | TTGTTAATTTGTGAATTTGA+GGG | - | tig0023317:10712-10731 | Msa1407550:CDS | 20.0% |
| !! | TTTAGTACTTAAGATAGTAA+GGG | + | tig0023317:10752-10771 | None:intergenic | 20.0% |
| !!! | TTTTAGTACTTAAGATAGTA+AGG | + | tig0023317:10753-10772 | None:intergenic | 20.0% |
| !!! | GTTAGTATTTTGCATATTAA+AGG | + | tig0023317:9902-9921 | None:intergenic | 20.0% |
| !! | ATATGCAAAATACTAACAAT+TGG | - | tig0023317:9905-9924 | Msa1407550:intron | 20.0% |
| !! | TATGCAAAATACTAACAATT+GGG | - | tig0023317:9906-9925 | Msa1407550:intron | 20.0% |
| !!! | AGGACTAACATTAAAAATTT+TGG | + | tig0023317:10458-10477 | None:intergenic | 20.0% |
| !!! | ATTTAACACTACCATTTTAA+AGG | - | tig0023317:10547-10566 | Msa1407550:intron | 20.0% |
| !!! | TGGTGGTTTTTTAAATTTAA+AGG | - | tig0023317:10683-10702 | Msa1407550:intron | 20.0% |
| !!! | TTTGTTAATTTGTGAATTTG+AGG | - | tig0023317:10711-10730 | Msa1407550:CDS | 20.0% |
| !!! | TTGTTAATTTGTGAATTTGA+GGG | - | tig0023317:10712-10731 | Msa1407550:CDS | 20.0% |
| !! | TTTAGTACTTAAGATAGTAA+GGG | + | tig0023317:10752-10771 | None:intergenic | 20.0% |
| !!! | TTTTAGTACTTAAGATAGTA+AGG | + | tig0023317:10753-10772 | None:intergenic | 20.0% |
| ! | AAATCGATGTTAGATTCTAT+CGG | + | tig0023317:9517-9536 | None:intergenic | 25.0% |
| !!! | AATTTGGAATTGAATTTTGC+AGG | - | tig0023317:9562-9581 | Msa1407550:CDS | 25.0% |
| !! | AAACAACAATCTTAGCATTT+TGG | - | tig0023317:9859-9878 | Msa1407550:intron | 25.0% |
| !! | AACAACAATCTTAGCATTTT+GGG | - | tig0023317:9860-9879 | Msa1407550:intron | 25.0% |
| ! | AGTAATTGGATACCAAAAAT+TGG | - | tig0023317:9948-9967 | Msa1407550:intron | 25.0% |
| !! | ATATGACATTGTCCAATTTT+TGG | + | tig0023317:9963-9982 | None:intergenic | 25.0% |
| ! | AACATGAAACCATTAAAATG+GGG | + | tig0023317:10025-10044 | None:intergenic | 25.0% |
| ! | GAACATGAAACCATTAAAAT+GGG | + | tig0023317:10026-10045 | None:intergenic | 25.0% |
| ! | TGAACATGAAACCATTAAAA+TGG | + | tig0023317:10027-10046 | None:intergenic | 25.0% |
| !!! | CTCTTGTTGATTATTGATTT+TGG | - | tig0023317:10096-10115 | Msa1407550:intron | 25.0% |
| !!! | TTGTTGATTATTGATTTTGG+TGG | - | tig0023317:10099-10118 | Msa1407550:intron | 25.0% |
| !!! | TGTTGATTATTGATTTTGGT+GGG | - | tig0023317:10100-10119 | Msa1407550:intron | 25.0% |
| !!! | CTGAAGATATATTTTGATTG+AGG | - | tig0023317:10129-10148 | Msa1407550:intron | 25.0% |
| !!! | GAAATTGATTGCTGTTTTTA+GGG | - | tig0023317:10155-10174 | Msa1407550:intron | 25.0% |
| ! | AAGGAACTAAATTGATATCT+TGG | + | tig0023317:10230-10249 | None:intergenic | 25.0% |
| !!! | TATGCCTTTTCAAGTTTATA+TGG | - | tig0023317:10334-10353 | Msa1407550:intron | 25.0% |
| ! | ACTTCCATATAAACTTGAAA+AGG | + | tig0023317:10341-10360 | None:intergenic | 25.0% |
| !! | GTGCTAATTTGCAAATATAA+AGG | + | tig0023317:10478-10497 | None:intergenic | 25.0% |
| ! | AATAGCGATATTTAGGTATT+GGG | - | tig0023317:10649-10668 | Msa1407550:intron | 25.0% |
| !! | TTTGATTTCAACTTGGTTAA+AGG | + | tig0023317:10928-10947 | None:intergenic | 25.0% |
| ! | AAATCGATGTTAGATTCTAT+CGG | + | tig0023317:9517-9536 | None:intergenic | 25.0% |
| !!! | AATTTGGAATTGAATTTTGC+AGG | - | tig0023317:9562-9581 | Msa1407550:CDS | 25.0% |
| !! | AAACAACAATCTTAGCATTT+TGG | - | tig0023317:9859-9878 | Msa1407550:intron | 25.0% |
| !! | AACAACAATCTTAGCATTTT+GGG | - | tig0023317:9860-9879 | Msa1407550:intron | 25.0% |
| ! | AGTAATTGGATACCAAAAAT+TGG | - | tig0023317:9948-9967 | Msa1407550:intron | 25.0% |
| !! | ATATGACATTGTCCAATTTT+TGG | + | tig0023317:9963-9982 | None:intergenic | 25.0% |
| ! | AACATGAAACCATTAAAATG+GGG | + | tig0023317:10025-10044 | None:intergenic | 25.0% |
| ! | GAACATGAAACCATTAAAAT+GGG | + | tig0023317:10026-10045 | None:intergenic | 25.0% |
| ! | TGAACATGAAACCATTAAAA+TGG | + | tig0023317:10027-10046 | None:intergenic | 25.0% |
| !!! | CTCTTGTTGATTATTGATTT+TGG | - | tig0023317:10096-10115 | Msa1407550:intron | 25.0% |
| !!! | TTGTTGATTATTGATTTTGG+TGG | - | tig0023317:10099-10118 | Msa1407550:intron | 25.0% |
| !!! | TGTTGATTATTGATTTTGGT+GGG | - | tig0023317:10100-10119 | Msa1407550:intron | 25.0% |
| !!! | CTGAAGATATATTTTGATTG+AGG | - | tig0023317:10129-10148 | Msa1407550:intron | 25.0% |
| !!! | GAAATTGATTGCTGTTTTTA+GGG | - | tig0023317:10155-10174 | Msa1407550:intron | 25.0% |
| ! | AAGGAACTAAATTGATATCT+TGG | + | tig0023317:10230-10249 | None:intergenic | 25.0% |
| !!! | TATGCCTTTTCAAGTTTATA+TGG | - | tig0023317:10334-10353 | Msa1407550:intron | 25.0% |
| ! | ACTTCCATATAAACTTGAAA+AGG | + | tig0023317:10341-10360 | None:intergenic | 25.0% |
| !! | GTGCTAATTTGCAAATATAA+AGG | + | tig0023317:10478-10497 | None:intergenic | 25.0% |
| ! | AATAGCGATATTTAGGTATT+GGG | - | tig0023317:10649-10668 | Msa1407550:intron | 25.0% |
| !! | TTTGATTTCAACTTGGTTAA+AGG | + | tig0023317:10928-10947 | None:intergenic | 25.0% |
| TTCTTGAATGTTCTCTTCTT+CGG | + | tig0023317:9629-9648 | None:intergenic | 30.0% | |
| ! | TTAAAATGGGGTACTAAAGT+CGG | + | tig0023317:10013-10032 | None:intergenic | 30.0% |
| ! | ACTTTAGTACCCCATTTTAA+TGG | - | tig0023317:10013-10032 | Msa1407550:intron | 30.0% |
| !!! | CGAAATTGATTGCTGTTTTT+AGG | - | tig0023317:10154-10173 | Msa1407550:intron | 30.0% |
| AAGGCATATAACCTTCAAAA+TGG | + | tig0023317:10322-10341 | None:intergenic | 30.0% | |
| GTGACTCAGTATTCAAATTA+AGG | + | tig0023317:10508-10527 | None:intergenic | 30.0% | |
| ! | ACGCATGTAAACCTTTAAAA+TGG | + | tig0023317:10561-10580 | None:intergenic | 30.0% |
| CTTACTGAATAGCGATATTT+AGG | - | tig0023317:10642-10661 | Msa1407550:intron | 30.0% | |
| GAATAGCGATATTTAGGTAT+TGG | - | tig0023317:10648-10667 | Msa1407550:intron | 30.0% | |
| TTGTGAATTGGTTGTAGAAA+AGG | - | tig0023317:10796-10815 | Msa1407550:CDS | 30.0% | |
| TGTGAATTGGTTGTAGAAAA+GGG | - | tig0023317:10797-10816 | Msa1407550:CDS | 30.0% | |
| AATGATCATGTTACGAAGAT+GGG | + | tig0023317:10859-10878 | None:intergenic | 30.0% | |
| TTCTTGAATGTTCTCTTCTT+CGG | + | tig0023317:9629-9648 | None:intergenic | 30.0% | |
| ! | TTAAAATGGGGTACTAAAGT+CGG | + | tig0023317:10013-10032 | None:intergenic | 30.0% |
| ! | ACTTTAGTACCCCATTTTAA+TGG | - | tig0023317:10013-10032 | Msa1407550:intron | 30.0% |
| !!! | CGAAATTGATTGCTGTTTTT+AGG | - | tig0023317:10154-10173 | Msa1407550:intron | 30.0% |
| AAGGCATATAACCTTCAAAA+TGG | + | tig0023317:10322-10341 | None:intergenic | 30.0% | |
| GTGACTCAGTATTCAAATTA+AGG | + | tig0023317:10508-10527 | None:intergenic | 30.0% | |
| ! | ACGCATGTAAACCTTTAAAA+TGG | + | tig0023317:10561-10580 | None:intergenic | 30.0% |
| CTTACTGAATAGCGATATTT+AGG | - | tig0023317:10642-10661 | Msa1407550:intron | 30.0% | |
| GAATAGCGATATTTAGGTAT+TGG | - | tig0023317:10648-10667 | Msa1407550:intron | 30.0% | |
| TTGTGAATTGGTTGTAGAAA+AGG | - | tig0023317:10796-10815 | Msa1407550:CDS | 30.0% | |
| TGTGAATTGGTTGTAGAAAA+GGG | - | tig0023317:10797-10816 | Msa1407550:CDS | 30.0% | |
| AATGATCATGTTACGAAGAT+GGG | + | tig0023317:10859-10878 | None:intergenic | 30.0% | |
| TTCAAGAAGTTCAGTTTCAG+AGG | - | tig0023317:9641-9660 | Msa1407550:intron | 35.0% | |
| ! | CAAAGTTACCACCATTTTGA+AGG | - | tig0023317:10308-10327 | Msa1407550:intron | 35.0% |
| GCATATAACCTTCAAAATGG+TGG | + | tig0023317:10319-10338 | None:intergenic | 35.0% | |
| ! | GGTATTGGGACTAAATTGAT+TGG | - | tig0023317:10663-10682 | Msa1407550:intron | 35.0% |
| ATTGGGACTAAATTGATTGG+TGG | - | tig0023317:10666-10685 | Msa1407550:intron | 35.0% | |
| CAATGATCATGTTACGAAGA+TGG | + | tig0023317:10860-10879 | None:intergenic | 35.0% | |
| ATCATTGTACCTGAGATGAT+TGG | - | tig0023317:10873-10892 | Msa1407550:CDS | 35.0% | |
| TCATTGTACCTGAGATGATT+GGG | - | tig0023317:10874-10893 | Msa1407550:CDS | 35.0% | |
| AGCATTATTGGAGTGTACAA+TGG | - | tig0023317:10897-10916 | Msa1407550:intron | 35.0% | |
| GCATTATTGGAGTGTACAAT+GGG | - | tig0023317:10898-10917 | Msa1407550:intron | 35.0% | |
| ! | TCTCAGGTTTGATTTCAACT+TGG | + | tig0023317:10935-10954 | None:intergenic | 35.0% |
| GAAATCAAACCTGAGATGAT+CGG | - | tig0023317:10939-10958 | Msa1407550:intron | 35.0% | |
| TTCAAGAAGTTCAGTTTCAG+AGG | - | tig0023317:9641-9660 | Msa1407550:intron | 35.0% | |
| ! | CAAAGTTACCACCATTTTGA+AGG | - | tig0023317:10308-10327 | Msa1407550:intron | 35.0% |
| GCATATAACCTTCAAAATGG+TGG | + | tig0023317:10319-10338 | None:intergenic | 35.0% | |
| ! | GGTATTGGGACTAAATTGAT+TGG | - | tig0023317:10663-10682 | Msa1407550:intron | 35.0% |
| ATTGGGACTAAATTGATTGG+TGG | - | tig0023317:10666-10685 | Msa1407550:intron | 35.0% | |
| CAATGATCATGTTACGAAGA+TGG | + | tig0023317:10860-10879 | None:intergenic | 35.0% | |
| ATCATTGTACCTGAGATGAT+TGG | - | tig0023317:10873-10892 | Msa1407550:CDS | 35.0% | |
| TCATTGTACCTGAGATGATT+GGG | - | tig0023317:10874-10893 | Msa1407550:CDS | 35.0% | |
| AGCATTATTGGAGTGTACAA+TGG | - | tig0023317:10897-10916 | Msa1407550:intron | 35.0% | |
| GCATTATTGGAGTGTACAAT+GGG | - | tig0023317:10898-10917 | Msa1407550:intron | 35.0% | |
| ! | TCTCAGGTTTGATTTCAACT+TGG | + | tig0023317:10935-10954 | None:intergenic | 35.0% |
| GAAATCAAACCTGAGATGAT+CGG | - | tig0023317:10939-10958 | Msa1407550:intron | 35.0% | |
| ATCGGAAATCGAGTTTCAGA+AGG | + | tig0023317:9499-9518 | None:intergenic | 40.0% | |
| ! | CAGTTTCAGAGGAGTTGATT+TGG | - | tig0023317:9652-9671 | Msa1407550:intron | 40.0% |
| ! | AGCTTTTTGATGAGAGCCAT+GGG | + | tig0023317:9767-9786 | None:intergenic | 40.0% |
| ! | AAGCTTTTTGATGAGAGCCA+TGG | + | tig0023317:9768-9787 | None:intergenic | 40.0% |
| CATCAAAAAGCTTCGCAAAG+CGG | - | tig0023317:9775-9794 | Msa1407550:intron | 40.0% | |
| GAATTGGTTGTAGAAAAGGG+AGG | - | tig0023317:10800-10819 | Msa1407550:CDS | 40.0% | |
| ATAATGCTCCCAATCATCTC+AGG | + | tig0023317:10885-10904 | None:intergenic | 40.0% | |
| !! | GAGATGATTGGGAGCATTAT+TGG | - | tig0023317:10885-10904 | Msa1407550:CDS | 40.0% |
| ATGAGATCGAGAATTCAGCT+AGG | + | tig0023317:10971-10990 | None:intergenic | 40.0% | |
| TCATACAAGCCTGTTAAGCA+TGG | - | tig0023317:10987-11006 | Msa1407550:intron | 40.0% | |
| ATCGGAAATCGAGTTTCAGA+AGG | + | tig0023317:9499-9518 | None:intergenic | 40.0% | |
| ! | CAGTTTCAGAGGAGTTGATT+TGG | - | tig0023317:9652-9671 | Msa1407550:intron | 40.0% |
| ! | AGCTTTTTGATGAGAGCCAT+GGG | + | tig0023317:9767-9786 | None:intergenic | 40.0% |
| ! | AAGCTTTTTGATGAGAGCCA+TGG | + | tig0023317:9768-9787 | None:intergenic | 40.0% |
| CATCAAAAAGCTTCGCAAAG+CGG | - | tig0023317:9775-9794 | Msa1407550:intron | 40.0% | |
| GAATTGGTTGTAGAAAAGGG+AGG | - | tig0023317:10800-10819 | Msa1407550:CDS | 40.0% | |
| ATAATGCTCCCAATCATCTC+AGG | + | tig0023317:10885-10904 | None:intergenic | 40.0% | |
| !! | GAGATGATTGGGAGCATTAT+TGG | - | tig0023317:10885-10904 | Msa1407550:CDS | 40.0% |
| ATGAGATCGAGAATTCAGCT+AGG | + | tig0023317:10971-10990 | None:intergenic | 40.0% | |
| TCATACAAGCCTGTTAAGCA+TGG | - | tig0023317:10987-11006 | Msa1407550:intron | 40.0% | |
| CTCGCTAGGGTTTACGATTA+AGG | + | tig0023317:9443-9462 | None:intergenic | 45.0% | |
| ! | AATTTTGCAGGCAGACGTTG+AGG | - | tig0023317:9574-9593 | Msa1407550:CDS | 45.0% |
| GAGCTTAACAAGCTCATCAG+TGG | + | tig0023317:9696-9715 | None:intergenic | 45.0% | |
| AAGATGGGTCCTAACAGGTT+CGG | + | tig0023317:10844-10863 | None:intergenic | 45.0% | |
| TTACGAAGATGGGTCCTAAC+AGG | + | tig0023317:10849-10868 | None:intergenic | 45.0% | |
| AGGTAATGACCGATCATCTC+AGG | + | tig0023317:10951-10970 | None:intergenic | 45.0% | |
| AAGCATGGTAGACCTGGTAT+TGG | - | tig0023317:11002-11021 | Msa1407550:intron | 45.0% | |
| TCACTTGAGAGGAATGAACC+TGG | + | tig0023317:11042-11061 | None:intergenic | 45.0% | |
| CTCGCTAGGGTTTACGATTA+AGG | + | tig0023317:9443-9462 | None:intergenic | 45.0% | |
| ! | AATTTTGCAGGCAGACGTTG+AGG | - | tig0023317:9574-9593 | Msa1407550:CDS | 45.0% |
| GAGCTTAACAAGCTCATCAG+TGG | + | tig0023317:9696-9715 | None:intergenic | 45.0% | |
| AAGATGGGTCCTAACAGGTT+CGG | + | tig0023317:10844-10863 | None:intergenic | 45.0% | |
| TTACGAAGATGGGTCCTAAC+AGG | + | tig0023317:10849-10868 | None:intergenic | 45.0% | |
| AGGTAATGACCGATCATCTC+AGG | + | tig0023317:10951-10970 | None:intergenic | 45.0% | |
| AAGCATGGTAGACCTGGTAT+TGG | - | tig0023317:11002-11021 | Msa1407550:intron | 45.0% | |
| TCACTTGAGAGGAATGAACC+TGG | + | tig0023317:11042-11061 | None:intergenic | 45.0% | |
| !! | TAAATAAAAGAAATAAAAAT+GGG | + | tig0023317:9815-9834 | None:intergenic | 5.0% |
| !! | ATAAATAAAAGAAATAAAAA+TGG | + | tig0023317:9816-9835 | None:intergenic | 5.0% |
| !! | TAAATAAAAGAAATAAAAAT+GGG | + | tig0023317:9815-9834 | None:intergenic | 5.0% |
| !! | ATAAATAAAAGAAATAAAAA+TGG | + | tig0023317:9816-9835 | None:intergenic | 5.0% |
| CTCACCATTGCTGAATTCGC+CGG | + | tig0023317:9468-9487 | None:intergenic | 50.0% | |
| AGATGGGTCCTAACAGGTTC+GGG | + | tig0023317:10843-10862 | None:intergenic | 50.0% | |
| CCAGGTCTACCATGCTTAAC+AGG | + | tig0023317:10999-11018 | None:intergenic | 50.0% | |
| CCTGTTAAGCATGGTAGACC+TGG | - | tig0023317:10996-11015 | Msa1407550:intron | 50.0% | |
| GAGTGAGTAGCACCAATACC+AGG | + | tig0023317:11017-11036 | None:intergenic | 50.0% | |
| CTTGAGAGGAATGAACCTGG+AGG | + | tig0023317:11039-11058 | None:intergenic | 50.0% | |
| CTCACCATTGCTGAATTCGC+CGG | + | tig0023317:9468-9487 | None:intergenic | 50.0% | |
| AGATGGGTCCTAACAGGTTC+GGG | + | tig0023317:10843-10862 | None:intergenic | 50.0% | |
| CCAGGTCTACCATGCTTAAC+AGG | + | tig0023317:10999-11018 | None:intergenic | 50.0% | |
| CCTGTTAAGCATGGTAGACC+TGG | - | tig0023317:10996-11015 | Msa1407550:intron | 50.0% | |
| GAGTGAGTAGCACCAATACC+AGG | + | tig0023317:11017-11036 | None:intergenic | 50.0% | |
| CTTGAGAGGAATGAACCTGG+AGG | + | tig0023317:11039-11058 | None:intergenic | 50.0% | |
| TCGTAAACCCTAGCGAGCAC+CGG | - | tig0023317:9446-9465 | Msa1407550:CDS | 55.0% | |
| !! | AGCACCGGCGAATTCAGCAA+TGG | - | tig0023317:9461-9480 | Msa1407550:CDS | 55.0% |
| TCTCTTCTTCGGTACTCCCG+CGG | + | tig0023317:9618-9637 | None:intergenic | 55.0% | |
| TCAGTGCTCGTGCTCGTAGA+AGG | - | tig0023317:9717-9736 | Msa1407550:intron | 55.0% | |
| GCTCGTAGAAGGTTCCAGAG+AGG | - | tig0023317:9728-9747 | Msa1407550:intron | 55.0% | |
| GCTTACGAGTGAGACCTCTC+TGG | + | tig0023317:9745-9764 | None:intergenic | 55.0% | |
| AGGTCTCACTCGTAAGCCCA+TGG | - | tig0023317:9748-9767 | Msa1407550:intron | 55.0% | |
| !! | TAGAAAAGGGAGGCACCACC+TGG | - | tig0023317:10810-10829 | Msa1407550:CDS | 55.0% |
| GTGAGAAGCCCGAACCTGTT+AGG | - | tig0023317:10832-10851 | Msa1407550:CDS | 55.0% | |
| !! | TTGGTGCTACTCACTCCTCC+AGG | - | tig0023317:11021-11040 | Msa1407550:five_prime_UTR | 55.0% |
| TCGTAAACCCTAGCGAGCAC+CGG | - | tig0023317:9446-9465 | Msa1407550:CDS | 55.0% | |
| !! | AGCACCGGCGAATTCAGCAA+TGG | - | tig0023317:9461-9480 | Msa1407550:CDS | 55.0% |
| TCTCTTCTTCGGTACTCCCG+CGG | + | tig0023317:9618-9637 | None:intergenic | 55.0% | |
| TCAGTGCTCGTGCTCGTAGA+AGG | - | tig0023317:9717-9736 | Msa1407550:intron | 55.0% | |
| GCTCGTAGAAGGTTCCAGAG+AGG | - | tig0023317:9728-9747 | Msa1407550:intron | 55.0% | |
| GCTTACGAGTGAGACCTCTC+TGG | + | tig0023317:9745-9764 | None:intergenic | 55.0% | |
| AGGTCTCACTCGTAAGCCCA+TGG | - | tig0023317:9748-9767 | Msa1407550:intron | 55.0% | |
| !! | TAGAAAAGGGAGGCACCACC+TGG | - | tig0023317:10810-10829 | Msa1407550:CDS | 55.0% |
| GTGAGAAGCCCGAACCTGTT+AGG | - | tig0023317:10832-10851 | Msa1407550:CDS | 55.0% | |
| !! | TTGGTGCTACTCACTCCTCC+AGG | - | tig0023317:11021-11040 | Msa1407550:five_prime_UTR | 55.0% |
| GAATTCGCCGGTGCTCGCTA+GGG | + | tig0023317:9456-9475 | None:intergenic | 60.0% | |
| TGAATTCGCCGGTGCTCGCT+AGG | + | tig0023317:9457-9476 | None:intergenic | 60.0% | |
| ACAGGTTCGGGCTTCTCACC+AGG | + | tig0023317:10831-10850 | None:intergenic | 60.0% | |
| GAATTCGCCGGTGCTCGCTA+GGG | + | tig0023317:9456-9475 | None:intergenic | 60.0% | |
| TGAATTCGCCGGTGCTCGCT+AGG | + | tig0023317:9457-9476 | None:intergenic | 60.0% | |
| ACAGGTTCGGGCTTCTCACC+AGG | + | tig0023317:10831-10850 | None:intergenic | 60.0% | |
| CTTCTTCGGTACTCCCGCGG+CGG | + | tig0023317:9615-9634 | None:intergenic | 65.0% | |
| GGTTCGGGCTTCTCACCAGG+TGG | + | tig0023317:10828-10847 | None:intergenic | 65.0% | |
| CTTCTTCGGTACTCCCGCGG+CGG | + | tig0023317:9615-9634 | None:intergenic | 65.0% | |
| GGTTCGGGCTTCTCACCAGG+TGG | + | tig0023317:10828-10847 | None:intergenic | 65.0% | |
| AGATGCAGCAGCCGCCGCCG+CGG | - | tig0023317:9598-9617 | Msa1407550:CDS | 75.0% | |
| CTTCGGTACTCCCGCGGCGG+CGG | + | tig0023317:9612-9631 | None:intergenic | 75.0% | |
| AGATGCAGCAGCCGCCGCCG+CGG | - | tig0023317:9598-9617 | Msa1407550:CDS | 75.0% | |
| CTTCGGTACTCCCGCGGCGG+CGG | + | tig0023317:9612-9631 | None:intergenic | 75.0% | |
| ! | GATGCAGCAGCCGCCGCCGC+GGG | - | tig0023317:9599-9618 | Msa1407550:CDS | 80.0% |
| ! | GATGCAGCAGCCGCCGCCGC+GGG | - | tig0023317:9599-9618 | Msa1407550:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023317 | gene | 9428 | 11061 | 9428 | ID=Msa1407550;Name=Msa1407550 |
| tig0023317 | mRNA | 9428 | 11061 | 9428 | ID=Msa1407550-mRNA-1;Parent=Msa1407550;Name=Msa1407550-mRNA-1;_AED=0.23;_eAED=0.23;_QI=52|0.5|0.66|1|0.5|0.66|3|0|145 |
| tig0023317 | exon | 9428 | 9649 | 9428 | ID=Msa1407550-mRNA-1:exon:25226;Parent=Msa1407550-mRNA-1 |
| tig0023317 | exon | 10693 | 10905 | 10693 | ID=Msa1407550-mRNA-1:exon:25225;Parent=Msa1407550-mRNA-1 |
| tig0023317 | exon | 11007 | 11061 | 11007 | ID=Msa1407550-mRNA-1:exon:25224;Parent=Msa1407550-mRNA-1 |
| tig0023317 | five_prime_UTR | 11010 | 11061 | 11010 | ID=Msa1407550-mRNA-1:five_prime_utr;Parent=Msa1407550-mRNA-1 |
| tig0023317 | CDS | 11007 | 11009 | 11007 | ID=Msa1407550-mRNA-1:cds;Parent=Msa1407550-mRNA-1 |
| tig0023317 | CDS | 10693 | 10905 | 10693 | ID=Msa1407550-mRNA-1:cds;Parent=Msa1407550-mRNA-1 |
| tig0023317 | CDS | 9428 | 9649 | 9428 | ID=Msa1407550-mRNA-1:cds;Parent=Msa1407550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
