AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037080 MtrunA17_Chr1g0199961 98.233 283 5 0 1 283 1 283 0.0 576
Msa0037080 MtrunA17_Chr6g0462061 74.912 283 71 0 1 283 1 283 7.49e-163 453
Msa0037080 MtrunA17_Chr4g0030021 44.086 279 140 3 3 265 2 280 4.41e-76 233
Msa0037080 MtrunA17_Chr4g0073251 45.000 260 128 4 3 248 2 260 2.60e-73 225
Msa0037080 MtrunA17_Chr8g0366571 43.182 264 140 3 4 257 3 266 6.74e-68 212
Msa0037080 MtrunA17_Chr8g0389221 38.636 264 150 4 5 256 4 267 2.61e-58 187
Msa0037080 MtrunA17_Chr8g0386471 34.661 251 154 2 12 252 13 263 5.29e-58 186
Msa0037080 MtrunA17_Chr5g0411131 41.065 263 145 3 5 257 4 266 5.23e-53 174
Msa0037080 MtrunA17_Chr4g0062101 34.749 259 156 3 2 247 4 262 8.10e-53 173
Msa0037080 MtrunA17_Chr5g0447681 27.273 253 153 4 3 243 48 281 4.88e-25 101
Msa0037080 MtrunA17_Chr2g0307651 36.986 146 92 0 1 146 1 146 8.80e-24 95.1
Msa0037080 MtrunA17_Chr2g0307641 48.052 77 38 1 185 259 17 93 6.15e-19 79.7
Msa0037080 MtrunA17_Chr5g0447671 33.333 117 65 3 120 232 49 156 8.65e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037080 AT3G12090.1 67.254 284 90 2 1 283 1 282 1.69e-131 374
Msa0037080 AT4G23410.1 56.940 281 119 2 1 280 1 280 3.50e-116 335
Msa0037080 AT3G45600.1 44.803 279 138 3 3 265 2 280 8.21e-84 253
Msa0037080 AT4G28050.1 41.538 260 140 3 1 248 1 260 1.62e-77 236
Msa0037080 AT4G30430.1 38.148 270 155 3 1 258 1 270 1.54e-75 232
Msa0037080 AT2G23810.1 39.773 264 146 4 1 251 1 264 1.56e-75 232
Msa0037080 AT5G60220.1 43.321 277 141 4 3 263 2 278 3.48e-65 207
Msa0037080 AT1G18520.1 40.075 267 142 4 1 250 1 266 1.56e-62 198
Msa0037080 AT5G46700.1 42.045 264 143 3 4 257 3 266 6.62e-61 194
Msa0037080 AT2G19580.1 40.377 265 147 4 4 257 3 267 6.10e-58 187
Msa0037080 AT1G63260.2 35.317 252 147 4 5 246 6 251 7.56e-56 181
Msa0037080 AT1G63260.6 34.167 240 148 3 5 234 6 245 1.14e-51 171
Msa0037080 AT1G63260.1 34.167 240 148 3 5 234 6 245 1.14e-51 171
Msa0037080 AT1G63260.3 34.167 240 148 3 5 234 6 245 1.37e-51 171
Msa0037080 AT1G63260.5 35.211 213 128 3 5 207 6 218 1.35e-45 153
Msa0037080 AT3G45600.2 50.340 147 71 1 3 147 2 148 5.51e-45 151
Msa0037080 AT1G63260.4 36.782 174 108 2 5 176 6 179 1.72e-37 132
Msa0037080 AT2G03840.1 27.848 237 155 4 12 232 23 259 2.39e-32 120
Msa0037080 AT5G23030.1 31.128 257 166 4 1 247 1 256 2.92e-31 117
Msa0037080 AT5G57810.1 26.459 257 140 9 10 233 60 300 8.76e-19 85.1

Find 72 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTGGGTTTGACTATATT+TGG 0.153305 1_1:-65986038 Msa0037080:CDS
GAATACAAAATCCACGTTAT+TGG 0.203585 1_1:-65985920 Msa0037080:CDS
CATAGTCCTGCTCCAATTAT+TGG 0.212597 1_1:+65986227 None:intergenic
CAAACACCACTTCTTGTAAT+AGG 0.226966 1_1:-65986167 Msa0037080:CDS
TTAGCATCCATACCAATAAT+TGG 0.238729 1_1:-65986239 Msa0037080:CDS
ATTATAATTTGTACCTGTAT+TGG 0.306319 1_1:+65985807 None:intergenic
GGTTTGACTATATTTGGTTT+TGG 0.337933 1_1:-65986032 Msa0037080:CDS
GTTACTAATAGTAGCACTAT+TGG 0.340814 1_1:-65986054 Msa0037080:CDS
CAATAATTGGAGCAGGACTA+TGG 0.354102 1_1:-65986226 Msa0037080:CDS
CTCATAGGGATTTATTCAAT+TGG 0.355629 1_1:-65985467 Msa0037080:CDS
TTACTAATAGTAGCACTATT+GGG 0.365406 1_1:-65986053 Msa0037080:CDS
GGTGGAGATGGTTGCATGAT+AGG 0.367982 1_1:-65984692 Msa0037080:CDS
CACTCATAACATAGCAATCT+TGG 0.369072 1_1:+65985575 None:intergenic
AACTGCATGCAATTACAATA+TGG 0.369952 1_1:-65985648 Msa0037080:CDS
TGCTTGGGTGGGTGCTCCAT+AGG 0.377208 1_1:-65984628 Msa0037080:three_prime_UTR
ACTTTCCTCTTGGACCCCTT+TGG 0.378547 1_1:-65985853 Msa0037080:CDS
CTTGTGACAAACTTTCCTCT+TGG 0.384482 1_1:-65985863 Msa0037080:CDS
GCTTCCTAGTAGTAGTAGTT+TGG 0.401624 1_1:-65984517 Msa0037080:three_prime_UTR
CTATTACAAGAAGTGGTGTT+TGG 0.407257 1_1:+65986168 None:intergenic
AGGTTCAGTAACACAGTGAT+AGG 0.407586 1_1:-65986284 Msa0037080:CDS
TAAGAGTGAGAGAAATGTAT+AGG 0.412153 1_1:-65986304 Msa0037080:exon
TTACCAATGGTAATCCCATC+TGG 0.428713 1_1:+65985367 None:intergenic
TTCATGTTGCATGTGCACTA+TGG 0.430443 1_1:-65986097 Msa0037080:CDS
TTGAAGACATAAGAAGGAAT+TGG 0.432488 1_1:-65985529 Msa0037080:CDS
GCTGAAACAGATTATCCATA+TGG 0.446295 1_1:-65985416 Msa0037080:CDS
ATATCATTAGCTGGTTTCAT+TGG 0.450232 1_1:-65986128 Msa0037080:CDS
AGTTCCACAGTGTATGGTAT+TGG 0.468810 1_1:-65984588 Msa0037080:three_prime_UTR
GAATGATATGTCTCCAATAC+AGG 0.472664 1_1:-65985820 Msa0037080:intron
TATGCTCTATCATCCATGCT+TGG 0.472740 1_1:-65984644 Msa0037080:three_prime_UTR
TTCACTAGTTCCACAGTGTA+TGG 0.473795 1_1:-65984594 Msa0037080:three_prime_UTR
TCCTGCTCCAATTATTGGTA+TGG 0.474090 1_1:+65986232 None:intergenic
GCTTGGGTGGGTGCTCCATA+GGG 0.477808 1_1:-65984627 Msa0037080:three_prime_UTR
CATTCTGCATATAATCCAAA+GGG 0.480639 1_1:+65985838 None:intergenic
TACTAGGAAGCTGATGATGC+TGG 0.483715 1_1:+65984529 None:intergenic
TGGGTCTAACTTTGGTCATA+CGG 0.487577 1_1:+65985387 None:intergenic
AAGACTCAGATTGCTACAAA+TGG 0.488256 1_1:-65985607 Msa0037080:CDS
GTACTTGTGATATCATTAGC+TGG 0.488688 1_1:-65986137 Msa0037080:CDS
ATGCTCTATCATCCATGCTT+GGG 0.490576 1_1:-65984643 Msa0037080:three_prime_UTR
ATCCCATCTGGGTCTAACTT+TGG 0.490692 1_1:+65985379 None:intergenic
CTCTATCATCCATGCTTGGG+TGG 0.491952 1_1:-65984640 Msa0037080:three_prime_UTR
ATAAAACCTATTACAAGAAG+TGG 0.520418 1_1:+65986161 None:intergenic
GTGAATTGTCACAATCCCTA+TGG 0.524902 1_1:+65984612 None:intergenic
GCAGCCAAACTACTACTACT+AGG 0.525309 1_1:+65984513 None:intergenic
GACCCAGATGGGATTACCAT+TGG 0.527130 1_1:-65985370 Msa0037080:intron
TTGTAATTGCATGCAGTTGG+TGG 0.535222 1_1:+65985653 None:intergenic
TCCATACCAATAATTGGAGC+AGG 0.539612 1_1:-65986233 Msa0037080:CDS
ATGTGCACTATGGTTGTACT+TGG 0.544797 1_1:-65986087 Msa0037080:CDS
ATCTTACAGATTATTCACCT+TGG 0.548050 1_1:-65985953 Msa0037080:CDS
ATGGAGCACCCACCCAAGCA+TGG 0.563143 1_1:+65984631 None:intergenic
ATATTGTAATTGCATGCAGT+TGG 0.563181 1_1:+65985650 None:intergenic
GGTTCAGTAACACAGTGATA+GGG 0.566697 1_1:-65986283 Msa0037080:CDS
GACCAAAGTTAGACCCAGAT+GGG 0.574022 1_1:-65985381 Msa0037080:CDS
GAGTGTGATTCATGCAAAGC+TGG 0.574954 1_1:-65985557 Msa0037080:CDS
CCCTATGAGCAAAATAAGCA+TGG 0.576576 1_1:+65985481 None:intergenic
TACCAATGGTAATCCCATCT+GGG 0.577451 1_1:+65985368 None:intergenic
GGTGTGACTAGTAAAGGTGG+TGG 0.578149 1_1:-65986011 Msa0037080:CDS
GAGCAGGACTATGGATGGCA+AGG 0.579423 1_1:-65986217 Msa0037080:CDS
TCATTCTGCATATAATCCAA+AGG 0.583877 1_1:+65985837 None:intergenic
TGACCAAAGTTAGACCCAGA+TGG 0.584683 1_1:-65985382 Msa0037080:CDS
GTGTGCTTGAAGACATAAGA+AGG 0.590298 1_1:-65985535 Msa0037080:CDS
GAGATGGTTGCATGATAGGA+AGG 0.591262 1_1:-65984688 Msa0037080:CDS
TCTATCATCCATGCTTGGGT+GGG 0.595712 1_1:-65984639 Msa0037080:three_prime_UTR
ACATAAAATTGAATGTCTCA+AGG 0.597731 1_1:-65984565 Msa0037080:three_prime_UTR
AATTGGAGCAGGACTATGGA+TGG 0.601063 1_1:-65986222 Msa0037080:CDS
TTTGGTGTGACTAGTAAAGG+TGG 0.610196 1_1:-65986014 Msa0037080:CDS
ATGATGCTGGAAAGAAACAA+AGG 0.616696 1_1:+65984542 None:intergenic
GGTGGTGGTGTAGAAGTGCC+TGG 0.625849 1_1:-65985996 Msa0037080:CDS
TTTATAGTATTCCAATAACG+TGG 0.646190 1_1:+65985909 None:intergenic
ATAATCCAAAGGGGTCCAAG+AGG 0.661558 1_1:+65985848 None:intergenic
TACTCACTATAAGATCTACC+AGG 0.665561 1_1:+65985978 None:intergenic
ATGTCCAATACCATACACTG+TGG 0.699729 1_1:+65984584 None:intergenic
ATTCTGCATATAATCCAAAG+GGG 0.741377 1_1:+65985839 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAATACCTTTTTTT+AGG - chr1_1:65985573-65985592 Msa0037080:CDS 10.0%
!!! TTTTTAAATACCTTTTTTTA+GGG - chr1_1:65985574-65985593 Msa0037080:CDS 10.0%
!!! TTTTTTAAATACCTTTTTTT+AGG - chr1_1:65985573-65985592 Msa0037080:CDS 10.0%
!!! TTTTTAAATACCTTTTTTTA+GGG - chr1_1:65985574-65985593 Msa0037080:CDS 10.0%
!!! ACTATAAAGAATTGTATTTT+AGG - chr1_1:65984883-65984902 Msa0037080:intron 15.0%
!!! CTATAAAGAATTGTATTTTA+GGG - chr1_1:65984884-65984903 Msa0037080:intron 15.0%
!!! ACATTCAAAAAATGTTATTT+TGG + chr1_1:65985055-65985074 None:intergenic 15.0%
!!! TAACTTTTCATCATATATAT+TGG + chr1_1:65985438-65985457 None:intergenic 15.0%
!! GAATAAAAAAAGTTATACTT+TGG + chr1_1:65985879-65985898 None:intergenic 15.0%
!!! AATGTATAAATTTCTTTTCA+TGG - chr1_1:65985899-65985918 Msa0037080:CDS 15.0%
!! ATATTTCAAATGATCTAAAT+CGG - chr1_1:65985929-65985948 Msa0037080:CDS 15.0%
!!! TATATATTTTTACCATTTCT+TGG + chr1_1:65986013-65986032 None:intergenic 15.0%
!!! ACTATAAAGAATTGTATTTT+AGG - chr1_1:65984883-65984902 Msa0037080:intron 15.0%
!!! CTATAAAGAATTGTATTTTA+GGG - chr1_1:65984884-65984903 Msa0037080:intron 15.0%
!!! ACATTCAAAAAATGTTATTT+TGG + chr1_1:65985055-65985074 None:intergenic 15.0%
!!! TAACTTTTCATCATATATAT+TGG + chr1_1:65985438-65985457 None:intergenic 15.0%
!! GAATAAAAAAAGTTATACTT+TGG + chr1_1:65985879-65985898 None:intergenic 15.0%
!!! AATGTATAAATTTCTTTTCA+TGG - chr1_1:65985899-65985918 Msa0037080:CDS 15.0%
!! ATATTTCAAATGATCTAAAT+CGG - chr1_1:65985929-65985948 Msa0037080:CDS 15.0%
!!! TATATATTTTTACCATTTCT+TGG + chr1_1:65986013-65986032 None:intergenic 15.0%
!!! ATTATAATTTGTACCTGTAT+TGG + chr1_1:65984973-65984992 None:intergenic 20.0%
!! AATTGATTAATGCTAAGTTA+TGG - chr1_1:65985077-65985096 Msa0037080:intron 20.0%
!! CATAATTATTGATAAGCTTA+TGG - chr1_1:65985537-65985556 Msa0037080:CDS 20.0%
!! GTATTTAAATCCCTAAAAAA+AGG + chr1_1:65985587-65985606 None:intergenic 20.0%
!! TCAATGACATTAAATTACTT+GGG + chr1_1:65985622-65985641 None:intergenic 20.0%
!! TTCAATGACATTAAATTACT+TGG + chr1_1:65985623-65985642 None:intergenic 20.0%
!!! AAAAAACATCCTTTTTGTAA+AGG - chr1_1:65985641-65985660 Msa0037080:CDS 20.0%
!!! AAAAACATCCTTTTTGTAAA+GGG - chr1_1:65985642-65985661 Msa0037080:CDS 20.0%
!! TATTTCAAATGATCTAAATC+GGG - chr1_1:65985930-65985949 Msa0037080:CDS 20.0%
!!! ATTATAATTTGTACCTGTAT+TGG + chr1_1:65984973-65984992 None:intergenic 20.0%
!! AATTGATTAATGCTAAGTTA+TGG - chr1_1:65985077-65985096 Msa0037080:intron 20.0%
!! CATAATTATTGATAAGCTTA+TGG - chr1_1:65985537-65985556 Msa0037080:CDS 20.0%
!! GTATTTAAATCCCTAAAAAA+AGG + chr1_1:65985587-65985606 None:intergenic 20.0%
!! TCAATGACATTAAATTACTT+GGG + chr1_1:65985622-65985641 None:intergenic 20.0%
!! TTCAATGACATTAAATTACT+TGG + chr1_1:65985623-65985642 None:intergenic 20.0%
!!! AAAAAACATCCTTTTTGTAA+AGG - chr1_1:65985641-65985660 Msa0037080:CDS 20.0%
!!! AAAAACATCCTTTTTGTAAA+GGG - chr1_1:65985642-65985661 Msa0037080:CDS 20.0%
!! TATTTCAAATGATCTAAATC+GGG - chr1_1:65985930-65985949 Msa0037080:CDS 20.0%
! ATAAAACCTATTACAAGAAG+TGG + chr1_1:65984619-65984638 None:intergenic 25.0%
! TTACTAATAGTAGCACTATT+GGG - chr1_1:65984724-65984743 Msa0037080:intron 25.0%
! TTTATAGTATTCCAATAACG+TGG + chr1_1:65984871-65984890 None:intergenic 25.0%
! ATATATATTGGACTTACCAA+TGG + chr1_1:65985426-65985445 None:intergenic 25.0%
! CCTGAGTAAATCTAATTTAT+AGG + chr1_1:65985467-65985486 None:intergenic 25.0%
! CCTATAAATTAGATTTACTC+AGG - chr1_1:65985464-65985483 Msa0037080:CDS 25.0%
! CAATGACATTAAATTACTTG+GGG + chr1_1:65985621-65985640 None:intergenic 25.0%
!! AAAACATCCTTTTTGTAAAG+GGG - chr1_1:65985643-65985662 Msa0037080:CDS 25.0%
! ACAATGAAACTTAACTTAGT+TGG + chr1_1:65985769-65985788 None:intergenic 25.0%
! TTTATACAAGAACCAAGAAA+TGG - chr1_1:65985998-65986017 Msa0037080:CDS 25.0%
! ACATAAAATTGAATGTCTCA+AGG - chr1_1:65986212-65986231 Msa0037080:CDS 25.0%
! ATAAAACCTATTACAAGAAG+TGG + chr1_1:65984619-65984638 None:intergenic 25.0%
! TTACTAATAGTAGCACTATT+GGG - chr1_1:65984724-65984743 Msa0037080:intron 25.0%
! TTTATAGTATTCCAATAACG+TGG + chr1_1:65984871-65984890 None:intergenic 25.0%
! ATATATATTGGACTTACCAA+TGG + chr1_1:65985426-65985445 None:intergenic 25.0%
! CCTGAGTAAATCTAATTTAT+AGG + chr1_1:65985467-65985486 None:intergenic 25.0%
! CCTATAAATTAGATTTACTC+AGG - chr1_1:65985464-65985483 Msa0037080:CDS 25.0%
! CAATGACATTAAATTACTTG+GGG + chr1_1:65985621-65985640 None:intergenic 25.0%
!! AAAACATCCTTTTTGTAAAG+GGG - chr1_1:65985643-65985662 Msa0037080:CDS 25.0%
! ACAATGAAACTTAACTTAGT+TGG + chr1_1:65985769-65985788 None:intergenic 25.0%
! TTTATACAAGAACCAAGAAA+TGG - chr1_1:65985998-65986017 Msa0037080:CDS 25.0%
! ACATAAAATTGAATGTCTCA+AGG - chr1_1:65986212-65986231 Msa0037080:CDS 25.0%
TAAGAGTGAGAGAAATGTAT+AGG - chr1_1:65984473-65984492 Msa0037080:three_prime_UTR 30.0%
TTAGCATCCATACCAATAAT+TGG - chr1_1:65984538-65984557 Msa0037080:three_prime_UTR 30.0%
! ATATCATTAGCTGGTTTCAT+TGG - chr1_1:65984649-65984668 Msa0037080:three_prime_UTR 30.0%
GTTACTAATAGTAGCACTAT+TGG - chr1_1:65984723-65984742 Msa0037080:intron 30.0%
CTATTGGGTTTGACTATATT+TGG - chr1_1:65984739-65984758 Msa0037080:intron 30.0%
!! GGTTTGACTATATTTGGTTT+TGG - chr1_1:65984745-65984764 Msa0037080:intron 30.0%
ATCTTACAGATTATTCACCT+TGG - chr1_1:65984824-65984843 Msa0037080:intron 30.0%
! TGTATTCTTTTCTTCAACCA+AGG + chr1_1:65984844-65984863 None:intergenic 30.0%
GAATACAAAATCCACGTTAT+TGG - chr1_1:65984857-65984876 Msa0037080:intron 30.0%
ATTCTGCATATAATCCAAAG+GGG + chr1_1:65984941-65984960 None:intergenic 30.0%
CATTCTGCATATAATCCAAA+GGG + chr1_1:65984942-65984961 None:intergenic 30.0%
TCATTCTGCATATAATCCAA+AGG + chr1_1:65984943-65984962 None:intergenic 30.0%
AAGTTATGGTTAATGTAGTC+AGG - chr1_1:65985091-65985110 Msa0037080:intron 30.0%
ATATTGTAATTGCATGCAGT+TGG + chr1_1:65985130-65985149 None:intergenic 30.0%
AACTGCATGCAATTACAATA+TGG - chr1_1:65985129-65985148 Msa0037080:intron 30.0%
TTGAAGACATAAGAAGGAAT+TGG - chr1_1:65985248-65985267 Msa0037080:intron 30.0%
CTCATAGGGATTTATTCAAT+TGG - chr1_1:65985310-65985329 Msa0037080:intron 30.0%
TATTGATCCCCTTTACAAAA+AGG + chr1_1:65985653-65985672 None:intergenic 30.0%
!!! ACTATTTTTTTTACCGAACG+AGG + chr1_1:65985683-65985702 None:intergenic 30.0%
!!! TGTTATGTGCTTTTTTCAAC+AGG - chr1_1:65986064-65986083 Msa0037080:CDS 30.0%
TAAGAGTGAGAGAAATGTAT+AGG - chr1_1:65984473-65984492 Msa0037080:three_prime_UTR 30.0%
TTAGCATCCATACCAATAAT+TGG - chr1_1:65984538-65984557 Msa0037080:three_prime_UTR 30.0%
! ATATCATTAGCTGGTTTCAT+TGG - chr1_1:65984649-65984668 Msa0037080:three_prime_UTR 30.0%
GTTACTAATAGTAGCACTAT+TGG - chr1_1:65984723-65984742 Msa0037080:intron 30.0%
CTATTGGGTTTGACTATATT+TGG - chr1_1:65984739-65984758 Msa0037080:intron 30.0%
!! GGTTTGACTATATTTGGTTT+TGG - chr1_1:65984745-65984764 Msa0037080:intron 30.0%
ATCTTACAGATTATTCACCT+TGG - chr1_1:65984824-65984843 Msa0037080:intron 30.0%
! TGTATTCTTTTCTTCAACCA+AGG + chr1_1:65984844-65984863 None:intergenic 30.0%
GAATACAAAATCCACGTTAT+TGG - chr1_1:65984857-65984876 Msa0037080:intron 30.0%
ATTCTGCATATAATCCAAAG+GGG + chr1_1:65984941-65984960 None:intergenic 30.0%
CATTCTGCATATAATCCAAA+GGG + chr1_1:65984942-65984961 None:intergenic 30.0%
TCATTCTGCATATAATCCAA+AGG + chr1_1:65984943-65984962 None:intergenic 30.0%
AAGTTATGGTTAATGTAGTC+AGG - chr1_1:65985091-65985110 Msa0037080:intron 30.0%
ATATTGTAATTGCATGCAGT+TGG + chr1_1:65985130-65985149 None:intergenic 30.0%
AACTGCATGCAATTACAATA+TGG - chr1_1:65985129-65985148 Msa0037080:intron 30.0%
TTGAAGACATAAGAAGGAAT+TGG - chr1_1:65985248-65985267 Msa0037080:intron 30.0%
CTCATAGGGATTTATTCAAT+TGG - chr1_1:65985310-65985329 Msa0037080:intron 30.0%
TATTGATCCCCTTTACAAAA+AGG + chr1_1:65985653-65985672 None:intergenic 30.0%
!!! ACTATTTTTTTTACCGAACG+AGG + chr1_1:65985683-65985702 None:intergenic 30.0%
!!! TGTTATGTGCTTTTTTCAAC+AGG - chr1_1:65986064-65986083 Msa0037080:CDS 30.0%
CTATTACAAGAAGTGGTGTT+TGG + chr1_1:65984612-65984631 None:intergenic 35.0%
CAAACACCACTTCTTGTAAT+AGG - chr1_1:65984610-65984629 Msa0037080:three_prime_UTR 35.0%
GTACTTGTGATATCATTAGC+TGG - chr1_1:65984640-65984659 Msa0037080:three_prime_UTR 35.0%
TACTCACTATAAGATCTACC+AGG + chr1_1:65984802-65984821 None:intergenic 35.0%
GAATGATATGTCTCCAATAC+AGG - chr1_1:65984957-65984976 Msa0037080:intron 35.0%
AAGACTCAGATTGCTACAAA+TGG - chr1_1:65985170-65985189 Msa0037080:intron 35.0%
CACTCATAACATAGCAATCT+TGG + chr1_1:65985205-65985224 None:intergenic 35.0%
!!! ACCATGCTTATTTTGCTCAT+AGG - chr1_1:65985295-65985314 Msa0037080:intron 35.0%
!!! CCATGCTTATTTTGCTCATA+GGG - chr1_1:65985296-65985315 Msa0037080:intron 35.0%
GCTGAAACAGATTATCCATA+TGG - chr1_1:65985361-65985380 Msa0037080:intron 35.0%
! CGTTTTACCTACACCAAAAA+AGG + chr1_1:65985741-65985760 None:intergenic 35.0%
!! TTACCTTTACTTTTGCCACA+TGG - chr1_1:65985955-65985974 Msa0037080:CDS 35.0%
ATTCCATGTGGCAAAAGTAA+AGG + chr1_1:65985961-65985980 None:intergenic 35.0%
!! TTACTTTTGCCACATGGAAT+TGG - chr1_1:65985961-65985980 Msa0037080:CDS 35.0%
! TACTTTTGCCACATGGAATT+GGG - chr1_1:65985962-65985981 Msa0037080:CDS 35.0%
!!! TATGTGCTTTTTTCAACAGG+TGG - chr1_1:65986067-65986086 Msa0037080:CDS 35.0%
ATGATGCTGGAAAGAAACAA+AGG + chr1_1:65986238-65986257 None:intergenic 35.0%
CTATTACAAGAAGTGGTGTT+TGG + chr1_1:65984612-65984631 None:intergenic 35.0%
CAAACACCACTTCTTGTAAT+AGG - chr1_1:65984610-65984629 Msa0037080:three_prime_UTR 35.0%
GTACTTGTGATATCATTAGC+TGG - chr1_1:65984640-65984659 Msa0037080:three_prime_UTR 35.0%
TACTCACTATAAGATCTACC+AGG + chr1_1:65984802-65984821 None:intergenic 35.0%
GAATGATATGTCTCCAATAC+AGG - chr1_1:65984957-65984976 Msa0037080:intron 35.0%
AAGACTCAGATTGCTACAAA+TGG - chr1_1:65985170-65985189 Msa0037080:intron 35.0%
CACTCATAACATAGCAATCT+TGG + chr1_1:65985205-65985224 None:intergenic 35.0%
!!! ACCATGCTTATTTTGCTCAT+AGG - chr1_1:65985295-65985314 Msa0037080:intron 35.0%
!!! CCATGCTTATTTTGCTCATA+GGG - chr1_1:65985296-65985315 Msa0037080:intron 35.0%
GCTGAAACAGATTATCCATA+TGG - chr1_1:65985361-65985380 Msa0037080:intron 35.0%
! CGTTTTACCTACACCAAAAA+AGG + chr1_1:65985741-65985760 None:intergenic 35.0%
!! TTACCTTTACTTTTGCCACA+TGG - chr1_1:65985955-65985974 Msa0037080:CDS 35.0%
ATTCCATGTGGCAAAAGTAA+AGG + chr1_1:65985961-65985980 None:intergenic 35.0%
!! TTACTTTTGCCACATGGAAT+TGG - chr1_1:65985961-65985980 Msa0037080:CDS 35.0%
! TACTTTTGCCACATGGAATT+GGG - chr1_1:65985962-65985981 Msa0037080:CDS 35.0%
!!! TATGTGCTTTTTTCAACAGG+TGG - chr1_1:65986067-65986086 Msa0037080:CDS 35.0%
ATGATGCTGGAAAGAAACAA+AGG + chr1_1:65986238-65986257 None:intergenic 35.0%
AGGTTCAGTAACACAGTGAT+AGG - chr1_1:65984493-65984512 Msa0037080:three_prime_UTR 40.0%
GGTTCAGTAACACAGTGATA+GGG - chr1_1:65984494-65984513 Msa0037080:three_prime_UTR 40.0%
TCCATACCAATAATTGGAGC+AGG - chr1_1:65984544-65984563 Msa0037080:three_prime_UTR 40.0%
TCCTGCTCCAATTATTGGTA+TGG + chr1_1:65984548-65984567 None:intergenic 40.0%
CATAGTCCTGCTCCAATTAT+TGG + chr1_1:65984553-65984572 None:intergenic 40.0%
CAATAATTGGAGCAGGACTA+TGG - chr1_1:65984551-65984570 Msa0037080:three_prime_UTR 40.0%
TTCATGTTGCATGTGCACTA+TGG - chr1_1:65984680-65984699 Msa0037080:CDS 40.0%
ATGTGCACTATGGTTGTACT+TGG - chr1_1:65984690-65984709 Msa0037080:CDS 40.0%
!! GGTTTTGGTGTGACTAGTAA+AGG - chr1_1:65984760-65984779 Msa0037080:intron 40.0%
! TTTGGTGTGACTAGTAAAGG+TGG - chr1_1:65984763-65984782 Msa0037080:intron 40.0%
CTTGTGACAAACTTTCCTCT+TGG - chr1_1:65984914-65984933 Msa0037080:intron 40.0%
TTGTAATTGCATGCAGTTGG+TGG + chr1_1:65985127-65985146 None:intergenic 40.0%
GTGTGCTTGAAGACATAAGA+AGG - chr1_1:65985242-65985261 Msa0037080:intron 40.0%
CCCTATGAGCAAAATAAGCA+TGG + chr1_1:65985299-65985318 None:intergenic 40.0%
! GTCATACGGTTTTCACCATA+TGG + chr1_1:65985379-65985398 None:intergenic 40.0%
TGGGTCTAACTTTGGTCATA+CGG + chr1_1:65985393-65985412 None:intergenic 40.0%
TACCAATGGTAATCCCATCT+GGG + chr1_1:65985412-65985431 None:intergenic 40.0%
TTACCAATGGTAATCCCATC+TGG + chr1_1:65985413-65985432 None:intergenic 40.0%
TCAATAGTGTTCTCCTCGTT+CGG - chr1_1:65985667-65985686 Msa0037080:CDS 40.0%
TGAGTCATGAAACGGAAAAG+TGG + chr1_1:65985711-65985730 None:intergenic 40.0%
GTTGTAGGTGAGTCATGAAA+CGG + chr1_1:65985719-65985738 None:intergenic 40.0%
!!! GACTCACCTACAACCTTTTT+TGG - chr1_1:65985725-65985744 Msa0037080:intron 40.0%
CCTACACCAAAAAAGGTTGT+AGG + chr1_1:65985734-65985753 None:intergenic 40.0%
!!! CCTACAACCTTTTTTGGTGT+AGG - chr1_1:65985731-65985750 Msa0037080:intron 40.0%
ACATGGAATTGGGATTTGGA+GGG - chr1_1:65985972-65985991 Msa0037080:CDS 40.0%
!!! CTTTTTTCAACAGGTGGAGA+TGG - chr1_1:65986073-65986092 Msa0037080:CDS 40.0%
TATGCTCTATCATCCATGCT+TGG - chr1_1:65986133-65986152 Msa0037080:CDS 40.0%
ATGCTCTATCATCCATGCTT+GGG - chr1_1:65986134-65986153 Msa0037080:CDS 40.0%
GTGAATTGTCACAATCCCTA+TGG + chr1_1:65986168-65986187 None:intergenic 40.0%
TTCACTAGTTCCACAGTGTA+TGG - chr1_1:65986183-65986202 Msa0037080:CDS 40.0%
AGTTCCACAGTGTATGGTAT+TGG - chr1_1:65986189-65986208 Msa0037080:CDS 40.0%
ATGTCCAATACCATACACTG+TGG + chr1_1:65986196-65986215 None:intergenic 40.0%
GCTTCCTAGTAGTAGTAGTT+TGG - chr1_1:65986260-65986279 Msa0037080:CDS 40.0%
AGGTTCAGTAACACAGTGAT+AGG - chr1_1:65984493-65984512 Msa0037080:three_prime_UTR 40.0%
GGTTCAGTAACACAGTGATA+GGG - chr1_1:65984494-65984513 Msa0037080:three_prime_UTR 40.0%
TCCATACCAATAATTGGAGC+AGG - chr1_1:65984544-65984563 Msa0037080:three_prime_UTR 40.0%
TCCTGCTCCAATTATTGGTA+TGG + chr1_1:65984548-65984567 None:intergenic 40.0%
CATAGTCCTGCTCCAATTAT+TGG + chr1_1:65984553-65984572 None:intergenic 40.0%
CAATAATTGGAGCAGGACTA+TGG - chr1_1:65984551-65984570 Msa0037080:three_prime_UTR 40.0%
TTCATGTTGCATGTGCACTA+TGG - chr1_1:65984680-65984699 Msa0037080:CDS 40.0%
ATGTGCACTATGGTTGTACT+TGG - chr1_1:65984690-65984709 Msa0037080:CDS 40.0%
!! GGTTTTGGTGTGACTAGTAA+AGG - chr1_1:65984760-65984779 Msa0037080:intron 40.0%
! TTTGGTGTGACTAGTAAAGG+TGG - chr1_1:65984763-65984782 Msa0037080:intron 40.0%
CTTGTGACAAACTTTCCTCT+TGG - chr1_1:65984914-65984933 Msa0037080:intron 40.0%
TTGTAATTGCATGCAGTTGG+TGG + chr1_1:65985127-65985146 None:intergenic 40.0%
GTGTGCTTGAAGACATAAGA+AGG - chr1_1:65985242-65985261 Msa0037080:intron 40.0%
CCCTATGAGCAAAATAAGCA+TGG + chr1_1:65985299-65985318 None:intergenic 40.0%
! GTCATACGGTTTTCACCATA+TGG + chr1_1:65985379-65985398 None:intergenic 40.0%
TGGGTCTAACTTTGGTCATA+CGG + chr1_1:65985393-65985412 None:intergenic 40.0%
TACCAATGGTAATCCCATCT+GGG + chr1_1:65985412-65985431 None:intergenic 40.0%
TTACCAATGGTAATCCCATC+TGG + chr1_1:65985413-65985432 None:intergenic 40.0%
TCAATAGTGTTCTCCTCGTT+CGG - chr1_1:65985667-65985686 Msa0037080:CDS 40.0%
TGAGTCATGAAACGGAAAAG+TGG + chr1_1:65985711-65985730 None:intergenic 40.0%
GTTGTAGGTGAGTCATGAAA+CGG + chr1_1:65985719-65985738 None:intergenic 40.0%
!!! GACTCACCTACAACCTTTTT+TGG - chr1_1:65985725-65985744 Msa0037080:intron 40.0%
CCTACACCAAAAAAGGTTGT+AGG + chr1_1:65985734-65985753 None:intergenic 40.0%
!!! CCTACAACCTTTTTTGGTGT+AGG - chr1_1:65985731-65985750 Msa0037080:intron 40.0%
ACATGGAATTGGGATTTGGA+GGG - chr1_1:65985972-65985991 Msa0037080:CDS 40.0%
!!! CTTTTTTCAACAGGTGGAGA+TGG - chr1_1:65986073-65986092 Msa0037080:CDS 40.0%
TATGCTCTATCATCCATGCT+TGG - chr1_1:65986133-65986152 Msa0037080:CDS 40.0%
ATGCTCTATCATCCATGCTT+GGG - chr1_1:65986134-65986153 Msa0037080:CDS 40.0%
GTGAATTGTCACAATCCCTA+TGG + chr1_1:65986168-65986187 None:intergenic 40.0%
TTCACTAGTTCCACAGTGTA+TGG - chr1_1:65986183-65986202 Msa0037080:CDS 40.0%
AGTTCCACAGTGTATGGTAT+TGG - chr1_1:65986189-65986208 Msa0037080:CDS 40.0%
ATGTCCAATACCATACACTG+TGG + chr1_1:65986196-65986215 None:intergenic 40.0%
GCTTCCTAGTAGTAGTAGTT+TGG - chr1_1:65986260-65986279 Msa0037080:CDS 40.0%
AATTGGAGCAGGACTATGGA+TGG - chr1_1:65984555-65984574 Msa0037080:three_prime_UTR 45.0%
ATAATCCAAAGGGGTCCAAG+AGG + chr1_1:65984932-65984951 None:intergenic 45.0%
GAGTGTGATTCATGCAAAGC+TGG - chr1_1:65985220-65985239 Msa0037080:intron 45.0%
TGACCAAAGTTAGACCCAGA+TGG - chr1_1:65985395-65985414 Msa0037080:CDS 45.0%
GACCAAAGTTAGACCCAGAT+GGG - chr1_1:65985396-65985415 Msa0037080:CDS 45.0%
ATCCCATCTGGGTCTAACTT+TGG + chr1_1:65985401-65985420 None:intergenic 45.0%
TGCCACATGGAATTGGGATT+TGG - chr1_1:65985968-65985987 Msa0037080:CDS 45.0%
CTCCAAATCCCAATTCCATG+TGG + chr1_1:65985973-65985992 None:intergenic 45.0%
CACATGGAATTGGGATTTGG+AGG - chr1_1:65985971-65985990 Msa0037080:CDS 45.0%
GAGATGGTTGCATGATAGGA+AGG - chr1_1:65986089-65986108 Msa0037080:CDS 45.0%
TCTATCATCCATGCTTGGGT+GGG - chr1_1:65986138-65986157 Msa0037080:CDS 45.0%
! TACTAGGAAGCTGATGATGC+TGG + chr1_1:65986251-65986270 None:intergenic 45.0%
GCAGCCAAACTACTACTACT+AGG + chr1_1:65986267-65986286 None:intergenic 45.0%
AATTGGAGCAGGACTATGGA+TGG - chr1_1:65984555-65984574 Msa0037080:three_prime_UTR 45.0%
ATAATCCAAAGGGGTCCAAG+AGG + chr1_1:65984932-65984951 None:intergenic 45.0%
GAGTGTGATTCATGCAAAGC+TGG - chr1_1:65985220-65985239 Msa0037080:intron 45.0%
TGACCAAAGTTAGACCCAGA+TGG - chr1_1:65985395-65985414 Msa0037080:CDS 45.0%
GACCAAAGTTAGACCCAGAT+GGG - chr1_1:65985396-65985415 Msa0037080:CDS 45.0%
ATCCCATCTGGGTCTAACTT+TGG + chr1_1:65985401-65985420 None:intergenic 45.0%
TGCCACATGGAATTGGGATT+TGG - chr1_1:65985968-65985987 Msa0037080:CDS 45.0%
CTCCAAATCCCAATTCCATG+TGG + chr1_1:65985973-65985992 None:intergenic 45.0%
CACATGGAATTGGGATTTGG+AGG - chr1_1:65985971-65985990 Msa0037080:CDS 45.0%
GAGATGGTTGCATGATAGGA+AGG - chr1_1:65986089-65986108 Msa0037080:CDS 45.0%
TCTATCATCCATGCTTGGGT+GGG - chr1_1:65986138-65986157 Msa0037080:CDS 45.0%
! TACTAGGAAGCTGATGATGC+TGG + chr1_1:65986251-65986270 None:intergenic 45.0%
GCAGCCAAACTACTACTACT+AGG + chr1_1:65986267-65986286 None:intergenic 45.0%
!! ATTAAAAAAATAAACTTATT+AGG - chr1_1:65985838-65985857 Msa0037080:CDS 5.0%
!! ATTAAAAAAATAAACTTATT+AGG - chr1_1:65985838-65985857 Msa0037080:CDS 5.0%
GGTGTGACTAGTAAAGGTGG+TGG - chr1_1:65984766-65984785 Msa0037080:intron 50.0%
ACTTTCCTCTTGGACCCCTT+TGG - chr1_1:65984924-65984943 Msa0037080:intron 50.0%
GACCCAGATGGGATTACCAT+TGG - chr1_1:65985407-65985426 Msa0037080:CDS 50.0%
GGTGGAGATGGTTGCATGAT+AGG - chr1_1:65986085-65986104 Msa0037080:CDS 50.0%
CTCTATCATCCATGCTTGGG+TGG - chr1_1:65986137-65986156 Msa0037080:CDS 50.0%
GGTGTGACTAGTAAAGGTGG+TGG - chr1_1:65984766-65984785 Msa0037080:intron 50.0%
ACTTTCCTCTTGGACCCCTT+TGG - chr1_1:65984924-65984943 Msa0037080:intron 50.0%
GACCCAGATGGGATTACCAT+TGG - chr1_1:65985407-65985426 Msa0037080:CDS 50.0%
GGTGGAGATGGTTGCATGAT+AGG - chr1_1:65986085-65986104 Msa0037080:CDS 50.0%
CTCTATCATCCATGCTTGGG+TGG - chr1_1:65986137-65986156 Msa0037080:CDS 50.0%
GAGCAGGACTATGGATGGCA+AGG - chr1_1:65984560-65984579 Msa0037080:three_prime_UTR 55.0%
GAGCAGGACTATGGATGGCA+AGG - chr1_1:65984560-65984579 Msa0037080:three_prime_UTR 55.0%
!! GGTGGTGGTGTAGAAGTGCC+TGG - chr1_1:65984781-65984800 Msa0037080:intron 60.0%
! ATGGAGCACCCACCCAAGCA+TGG + chr1_1:65986149-65986168 None:intergenic 60.0%
TGCTTGGGTGGGTGCTCCAT+AGG - chr1_1:65986149-65986168 Msa0037080:CDS 60.0%
GCTTGGGTGGGTGCTCCATA+GGG - chr1_1:65986150-65986169 Msa0037080:CDS 60.0%
!! GGTGGTGGTGTAGAAGTGCC+TGG - chr1_1:65984781-65984800 Msa0037080:intron 60.0%
! ATGGAGCACCCACCCAAGCA+TGG + chr1_1:65986149-65986168 None:intergenic 60.0%
TGCTTGGGTGGGTGCTCCAT+AGG - chr1_1:65986149-65986168 Msa0037080:CDS 60.0%
GCTTGGGTGGGTGCTCCATA+GGG - chr1_1:65986150-65986169 Msa0037080:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65984442 65986357 65984442 ID=Msa0037080;Name=Msa0037080
chr1_1 mRNA 65984442 65986357 65984442 ID=Msa0037080-mRNA-1;Parent=Msa0037080;Name=Msa0037080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=45|1|1|1|1|1|3|232|283
chr1_1 exon 65984442 65984713 65984442 ID=Msa0037080-mRNA-1:exon:21281;Parent=Msa0037080-mRNA-1
chr1_1 exon 65985371 65985690 65985371 ID=Msa0037080-mRNA-1:exon:21280;Parent=Msa0037080-mRNA-1
chr1_1 exon 65985821 65986357 65985821 ID=Msa0037080-mRNA-1:exon:21279;Parent=Msa0037080-mRNA-1
chr1_1 five_prime_UTR 65986313 65986357 65986313 ID=Msa0037080-mRNA-1:five_prime_utr;Parent=Msa0037080-mRNA-1
chr1_1 CDS 65985821 65986312 65985821 ID=Msa0037080-mRNA-1:cds;Parent=Msa0037080-mRNA-1
chr1_1 CDS 65985371 65985690 65985371 ID=Msa0037080-mRNA-1:cds;Parent=Msa0037080-mRNA-1
chr1_1 CDS 65984674 65984713 65984674 ID=Msa0037080-mRNA-1:cds;Parent=Msa0037080-mRNA-1
chr1_1 three_prime_UTR 65984442 65984673 65984442 ID=Msa0037080-mRNA-1:three_prime_utr;Parent=Msa0037080-mRNA-1
Gene Sequence

>Msa0037080

ATGTATAGGTTCAGTAACACAGTGATAGGGATCTTAAACTTGCTAACACTTTTAGCATCCATACCAATAATTGGAGCAGGACTATGGATGGCAAGGAGCAGCACAACTTGTGCAAATTTTCTCCAAACACCACTTCTTGTAATAGGTTTTATTGTACTTGTGATATCATTAGCTGGTTTCATTGGTGCTTGTTTTCATGTTGCATGTGCACTATGGTTGTACTTGGTGATTATGCTGTTACTAATAGTAGCACTATTGGGTTTGACTATATTTGGTTTTGGTGTGACTAGTAAAGGTGGTGGTGTAGAAGTGCCTGGTAGATCTTATAGTGAGTATCATCTTACAGATTATTCACCTTGGTTGAAGAAAAGAATACAAAATCCACGTTATTGGAATACTATAAAGAATTGTATTTTAGGGTCTAAAACTTGTGACAAACTTTCCTCTTGGACCCCTTTGGATTATATGCAGAATGATATGTCTCCAATACAGTCAGGATGTTGTAAGCCACCAACTGCATGCAATTACAATATGGAAGCAGTGATGATGACACAAGACTCAGATTGCTACAAATGGAGCAATGAACCAAGATTGCTATGTTATGAGTGTGATTCATGCAAAGCTGGTGTGCTTGAAGACATAAGAAGGAATTGGCATAAGCTATCAGTTCTCACTGTCACCATGCTTATTTTGCTCATAGGGATTTATTCAATTGGATGTTGTGCTTTCAGAAATGCAAGAAGAGCTGAAACAGATTATCCATATGGTGAAAACCGTATGACCAAAGTTAGACCCAGATGGGATTACCATTGGTGGAGATGGTTGCATGATAGGAAGGAACAGCTTTATTAG
Protein sequence

>Msa0037080

MYRFSNTVIGILNLLTLLASIPIIGAGLWMARSSTTCANFLQTPLLVIGFIVLVISLAGFIGACFHVACALWLYLVIMLLLIVALLGLTIFGFGVTSKGGGVEVPGRSYSEYHLTDYSPWLKKRIQNPRYWNTIKNCILGSKTCDKLSSWTPLDYMQNDMSPIQSGCCKPPTACNYNMEAVMMTQDSDCYKWSNEPRLLCYECDSCKAGVLEDIRRNWHKLSVLTVTMLILLIGIYSIGCCAFRNARRAETDYPYGENRMTKVRPRWDYHWWRWLHDRKEQLY*