Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989890 | KEH41918.1 | 79.487 | 39 | 8 | 0 | 1 | 39 | 33 | 71 | 2.18e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989890 | A0A072VKI3 | 79.487 | 39 | 8 | 0 | 1 | 39 | 33 | 71 | 1.04e-11 | 66.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743810 | Msa0989890 | 0.801434 | 9.021790e-49 | -8.615850e-47 |
| Msa0745060 | Msa0989890 | 0.818832 | 1.595439e-52 | -8.615850e-47 |
| Msa0808010 | Msa0989890 | 0.818762 | 1.655108e-52 | -8.615850e-47 |
| Msa0808020 | Msa0989890 | 0.825198 | 5.340836e-54 | -8.615850e-47 |
| Msa0825860 | Msa0989890 | 0.816044 | 6.772499e-52 | -8.615850e-47 |
| Msa0365500 | Msa0989890 | 0.811294 | 7.523520e-51 | -8.615850e-47 |
| Msa0452900 | Msa0989890 | 0.819936 | 8.938382e-53 | -8.615850e-47 |
| Msa0989890 | Msa1016280 | 0.800240 | 1.581159e-48 | -8.615850e-47 |
| Msa0989890 | Msa1025360 | 0.819724 | 9.991474e-53 | -8.615850e-47 |
| Msa0989890 | Msa1025370 | 0.820884 | 5.418628e-53 | -8.615850e-47 |
| Msa0989890 | Msa1044830 | 0.817649 | 2.955362e-52 | -8.615850e-47 |
| Msa0989890 | Msa1044840 | 0.823035 | 1.720356e-53 | -8.615850e-47 |
| Msa0989890 | Msa1092990 | 0.807709 | 4.427861e-50 | -8.615850e-47 |
| Msa0989890 | Msa1100980 | 0.825579 | 4.341667e-54 | -8.615850e-47 |
| Msa0989890 | Msa1135740 | 0.805260 | 1.454614e-49 | -8.615850e-47 |
| Msa0989890 | Msa1146110 | 0.808474 | 3.042058e-50 | -8.615850e-47 |
| Msa0989890 | Msa1269670 | 0.811371 | 7.238841e-51 | -8.615850e-47 |
| Msa0989890 | Msa1270230 | 0.804684 | 1.919721e-49 | -8.615850e-47 |
| Msa0989890 | Msa1270240 | 0.800638 | 1.312260e-48 | -8.615850e-47 |
| Msa0989890 | Msa1285930 | 0.804061 | 2.588661e-49 | -8.615850e-47 |
| Msa0989890 | Msa1287800 | 0.802300 | 5.988840e-49 | -8.615850e-47 |
| Msa0989890 | Msa1287810 | 0.808411 | 3.137954e-50 | -8.615850e-47 |
| Msa0989890 | Msa1433120 | 0.805832 | 1.103214e-49 | -8.615850e-47 |
| Msa0267000 | Msa0989890 | 0.810551 | 1.089582e-50 | -8.615850e-47 |
| Msa0267010 | Msa0989890 | 0.815693 | 8.109800e-52 | -8.615850e-47 |
| Msa0360510 | Msa0989890 | 0.815651 | 8.287593e-52 | -8.615850e-47 |
| Msa0362420 | Msa0989890 | 0.857688 | 1.376752e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGTTGATGTTGGCGTTT+GGG | 0.301917 | 6_4:-47850775 | Msa0989890:CDS |
| CTGCTGTTGATGTTGGCGTT+TGG | 0.305064 | 6_4:-47850776 | Msa0989890:CDS |
| TGCGTTAGTAGAGTTGTCTT+TGG | 0.341810 | 6_4:-47854277 | Msa0989890:CDS |
| TCCGCATTTGTCATTGGGAT+TGG | 0.349754 | 6_4:-47850832 | Msa0989890:CDS |
| TAATACCCTGGTGGCTTCAT+TGG | 0.372731 | 6_4:+47850717 | None:intergenic |
| CCGCATTTGTCATTGGGATT+GGG | 0.378727 | 6_4:-47850831 | Msa0989890:CDS |
| AGAAGCTCCGCATTTGTCAT+TGG | 0.392099 | 6_4:-47850838 | Msa0989890:CDS |
| GTTGGCGTTTGGGCCCTTGC+TGG | 0.399458 | 6_4:-47850765 | Msa0989890:CDS |
| AGAGTTGTCTTTGGATGAAC+CGG | 0.403942 | 6_4:-47854268 | Msa0989890:CDS |
| GAAGCTCCGCATTTGTCATT+GGG | 0.411188 | 6_4:-47850837 | Msa0989890:CDS |
| ATTGGGTCAAACTGCATCCT+TGG | 0.431891 | 6_4:-47850814 | Msa0989890:CDS |
| TTTGGAATGTGGGACATTAG+TGG | 0.441165 | 6_4:-47854333 | None:intergenic |
| TCAACAGCAGCCTCAACAAC+AGG | 0.464778 | 6_4:+47850789 | None:intergenic |
| TACAACTCAACTTCAAAATC+CGG | 0.476328 | 6_4:+47854249 | None:intergenic |
| TCGTTACAGCCTACGTGCCT+TGG | 0.499914 | 6_4:-47852358 | Msa0989890:CDS |
| ATCCTTGGAGCCTGTTGTTG+AGG | 0.505912 | 6_4:-47850799 | Msa0989890:CDS |
| GTTGAGGCTGCTGTTGATGT+TGG | 0.510949 | 6_4:-47850783 | Msa0989890:CDS |
| ACGGTGAGAGTGAGGGATCA+AGG | 0.515014 | 6_4:+47852880 | None:intergenic |
| GTTGAGTTGTATCTTGATGA+TGG | 0.539585 | 6_4:-47854237 | Msa0989890:intron |
| GTCACGCGACGGCGAATCCA+AGG | 0.549305 | 6_4:+47852341 | None:intergenic |
| CATGAACCGCTTGATTGTGT+TGG | 0.550802 | 6_4:-47854303 | Msa0989890:CDS |
| TGATCCCTCACTCTCACCGT+TGG | 0.552967 | 6_4:-47852877 | Msa0989890:CDS |
| TTGGGCCCTTGCTGGAATTG+CGG | 0.571664 | 6_4:-47850757 | Msa0989890:CDS |
| AGCCTCAACAACAGGCTCCA+AGG | 0.572084 | 6_4:+47850797 | None:intergenic |
| AAGCTACCAATGAAGCCACC+AGG | 0.574315 | 6_4:-47850723 | Msa0989890:CDS |
| AATCAGCCGCAATTCCAGCA+AGG | 0.574501 | 6_4:+47850751 | None:intergenic |
| TGTTTCCAACGGTGAGAGTG+AGG | 0.582953 | 6_4:+47852872 | None:intergenic |
| ATCAGCCGCAATTCCAGCAA+GGG | 0.602852 | 6_4:+47850752 | None:intergenic |
| CTTAGTCACAATTCAGCCGT+CGG | 0.609510 | 6_4:-47852848 | Msa0989890:intron |
| CGTCGCGTGACTCTCATCGT+TGG | 0.620121 | 6_4:-47852329 | Msa0989890:intron |
| CAGTGATTGTGAGGCGACGG+TGG | 0.624540 | 6_4:+47852934 | None:intergenic |
| GTTTCCAACGGTGAGAGTGA+GGG | 0.625319 | 6_4:+47852873 | None:intergenic |
| ATGACGCAACAGTGATTGTG+AGG | 0.630200 | 6_4:+47852925 | None:intergenic |
| CAACAGTGATTGTGAGGCGA+CGG | 0.639124 | 6_4:+47852931 | None:intergenic |
| TGTGACTAAGATGTTTCCAA+CGG | 0.648870 | 6_4:+47852861 | None:intergenic |
| CCCAATCCCAATGACAAATG+CGG | 0.657695 | 6_4:+47850831 | None:intergenic |
| GCAATTCCAACACAATCAAG+CGG | 0.661130 | 6_4:+47854297 | None:intergenic |
| AGCTACCAATGAAGCCACCA+GGG | 0.683485 | 6_4:-47850722 | Msa0989890:CDS |
| GTAAGAGAGACTTAATACCC+TGG | 0.696191 | 6_4:+47850705 | None:intergenic |
| CAACGATGAGAGTCACGCGA+CGG | 0.699697 | 6_4:+47852330 | None:intergenic |
| ACGGCGAATCCAAGGCACGT+AGG | 0.722004 | 6_4:+47852349 | None:intergenic |
| AGAGAGACTTAATACCCTGG+TGG | 0.729027 | 6_4:+47850708 | None:intergenic |
| GTGAGAGTGAGGGATCAAGG+AGG | 0.738024 | 6_4:+47852883 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCCATATTAAAAAAA+TGG | - | chr6_4:47851100-47851119 | Msa0989890:intron | 10.0% |
| !!! | TTATAACCATTTTTTTAATA+TGG | + | chr6_4:47851109-47851128 | None:intergenic | 10.0% |
| !!! | TATTTTTAAAATTACAGTTT+TGG | + | chr6_4:47851563-47851582 | None:intergenic | 10.0% |
| !! | AAAAAGAAAAGAAAAATAAA+TGG | - | chr6_4:47851910-47851929 | Msa0989890:intron | 10.0% |
| !! | TGATATTAATGAAAAATATA+TGG | + | chr6_4:47853879-47853898 | None:intergenic | 10.0% |
| !!! | TTTAAAATACGTATAAAGTA+TGG | + | chr6_4:47851363-47851382 | None:intergenic | 15.0% |
| !! | AAAAAACTAAAACATGTAAA+TGG | + | chr6_4:47851508-47851527 | None:intergenic | 15.0% |
| !!! | TTTTAAATTTGTTTGGATAT+TGG | - | chr6_4:47852449-47852468 | Msa0989890:intron | 15.0% |
| !! | ATGTTGTTAATTATTTCAAA+AGG | - | chr6_4:47852593-47852612 | Msa0989890:intron | 15.0% |
| !! | TGTTGTTAATTATTTCAAAA+GGG | - | chr6_4:47852594-47852613 | Msa0989890:intron | 15.0% |
| !!! | AAAATTGTTTTTCAATATCT+TGG | - | chr6_4:47852834-47852853 | Msa0989890:intron | 15.0% |
| !! | AAAATTTATACATGTGATAT+TGG | - | chr6_4:47853143-47853162 | Msa0989890:intron | 15.0% |
| !! | NNNNNNNNNNGACATATTCA+TGG | + | chr6_4:47854090-47854109 | None:intergenic | 15.0% |
| !!! | TTTTTGAAATTTTTCCGTAT+CGG | - | chr6_4:47851192-47851211 | Msa0989890:intron | 20.0% |
| !! | ATAAAAAATAGTTGACACTA+AGG | - | chr6_4:47851416-47851435 | Msa0989890:intron | 20.0% |
| !! | TAAAAAATAGTTGACACTAA+GGG | - | chr6_4:47851417-47851436 | Msa0989890:intron | 20.0% |
| !! | AAACAAAAACTATTTCAAAC+AGG | + | chr6_4:47851443-47851462 | None:intergenic | 20.0% |
| !!! | TCTTGAATTTTTTAGTTTTG+GGG | + | chr6_4:47851534-47851553 | None:intergenic | 20.0% |
| !!! | GTCTTGAATTTTTTAGTTTT+GGG | + | chr6_4:47851535-47851554 | None:intergenic | 20.0% |
| !!! | TGTCTTGAATTTTTTAGTTT+TGG | + | chr6_4:47851536-47851555 | None:intergenic | 20.0% |
| !!! | TTTTTGTAATGACATGTATT+AGG | + | chr6_4:47851884-47851903 | None:intergenic | 20.0% |
| !! | TTTGGATAACAAAATTAGTT+TGG | - | chr6_4:47852358-47852377 | Msa0989890:CDS | 20.0% |
| !!! | AACAAAATTAGTTTGGATAT+TGG | - | chr6_4:47852365-47852384 | Msa0989890:CDS | 20.0% |
| !!! | CTCTGATTTTTAAATTTGTT+TGG | - | chr6_4:47852442-47852461 | Msa0989890:intron | 20.0% |
| !! | CAAATTTCAAAATCAAAATG+TGG | + | chr6_4:47852526-47852545 | None:intergenic | 20.0% |
| !! | ATGTAATAATAAGTCAAAAG+TGG | - | chr6_4:47853201-47853220 | Msa0989890:intron | 20.0% |
| !! | TGTAATAATAAGTCAAAAGT+GGG | - | chr6_4:47853202-47853221 | Msa0989890:intron | 20.0% |
| !!! | ATGTTTTTGACATGAAAATA+TGG | - | chr6_4:47853235-47853254 | Msa0989890:intron | 20.0% |
| !!! | GTTTATTGTTATTTCCTAAA+CGG | - | chr6_4:47853526-47853545 | Msa0989890:intron | 20.0% |
| !! | GCTAGCATATTAAAATATAA+AGG | - | chr6_4:47853702-47853721 | Msa0989890:intron | 20.0% |
| !! | GCATATTAAAATATAAAGGA+TGG | - | chr6_4:47853706-47853725 | Msa0989890:intron | 20.0% |
| !! | AAATTTCTTGAAGAAGAAAA+AGG | - | chr6_4:47853922-47853941 | Msa0989890:intron | 20.0% |
| !! | AATTTCTTGAAGAAGAAAAA+GGG | - | chr6_4:47853923-47853942 | Msa0989890:intron | 20.0% |
| !!! | TTGATATAGTGCTTCTTTTT+TGG | - | chr6_4:47850905-47850924 | Msa0989890:intron | 25.0% |
| !! | TACAAGTACATTTTTCACAA+TGG | - | chr6_4:47851478-47851497 | Msa0989890:intron | 25.0% |
| ! | TTGTTATAATTGCCAAGTAA+GGG | + | chr6_4:47851849-47851868 | None:intergenic | 25.0% |
| ! | ATTGTTATAATTGCCAAGTA+AGG | + | chr6_4:47851850-47851869 | None:intergenic | 25.0% |
| ! | AAATCGAATATCTTTGTTGA+AGG | - | chr6_4:47852238-47852257 | Msa0989890:intron | 25.0% |
| !! | TGAAGTTTGTTCTCAAAAAA+TGG | - | chr6_4:47852327-47852346 | Msa0989890:intron | 25.0% |
| !! | GAAGTTTGTTCTCAAAAAAT+GGG | - | chr6_4:47852328-47852347 | Msa0989890:intron | 25.0% |
| ! | AAACATGGTTATGTGATTAT+AGG | - | chr6_4:47852473-47852492 | Msa0989890:intron | 25.0% |
| ! | AGAAAATTTCAGTATTTACC+AGG | + | chr6_4:47852570-47852589 | None:intergenic | 25.0% |
| ! | TGCTTAACTATCTTAATCAA+TGG | - | chr6_4:47852767-47852786 | Msa0989890:intron | 25.0% |
| !!! | TTTTTCAATATCTTGGTTGA+GGG | - | chr6_4:47852841-47852860 | Msa0989890:intron | 25.0% |
| ! | CATTTAGTGTTAACCAATTT+CGG | + | chr6_4:47852906-47852925 | None:intergenic | 25.0% |
| ! | GTTAACACTAAATGTAGTTT+AGG | - | chr6_4:47852912-47852931 | Msa0989890:CDS | 25.0% |
| !!! | TAGCTTTGAATTAGTTATGA+TGG | - | chr6_4:47852961-47852980 | Msa0989890:intron | 25.0% |
| !!! | TTAGTTATGATGGATTTAGA+TGG | - | chr6_4:47852971-47852990 | Msa0989890:intron | 25.0% |
| ! | AATCCAATCTATGTATGATT+AGG | - | chr6_4:47853111-47853130 | Msa0989890:intron | 25.0% |
| ! | TATCCTAATCATACATAGAT+TGG | + | chr6_4:47853117-47853136 | None:intergenic | 25.0% |
| ! | ATTTATACATGTGATATTGG+AGG | - | chr6_4:47853146-47853165 | Msa0989890:intron | 25.0% |
| ! | TTTATACATGTGATATTGGA+GGG | - | chr6_4:47853147-47853166 | Msa0989890:intron | 25.0% |
| ! | TGAAAATATGGTTGAAATAG+AGG | - | chr6_4:47853247-47853266 | Msa0989890:intron | 25.0% |
| ! | TTATGTGTATAAACTAGTTG+AGG | - | chr6_4:47853279-47853298 | Msa0989890:intron | 25.0% |
| !!! | TCAATGACTTGTAGAAATTT+TGG | - | chr6_4:47853476-47853495 | Msa0989890:intron | 25.0% |
| !! | AAATTTTGGACAAATGCATA+AGG | - | chr6_4:47853490-47853509 | Msa0989890:intron | 25.0% |
| !!! | TAAAGGATGGATATTTTTGT+AGG | - | chr6_4:47853719-47853738 | Msa0989890:intron | 25.0% |
| TACAACTCAACTTCAAAATC+CGG | + | chr6_4:47850797-47850816 | None:intergenic | 30.0% | |
| !! | TTGTATCTTGATGATGGTAA+TGG | - | chr6_4:47850812-47850831 | Msa0989890:CDS | 30.0% |
| ! | AACACTAACAATGTTCCTTT+TGG | - | chr6_4:47850941-47850960 | Msa0989890:intron | 30.0% |
| AGTGCTATACTATATCCAAA+AGG | + | chr6_4:47850959-47850978 | None:intergenic | 30.0% | |
| TCAAAAATCAAGATACGCTA+CGG | + | chr6_4:47851179-47851198 | None:intergenic | 30.0% | |
| AAGTATGGAATGTAAAAAGC+AGG | + | chr6_4:47851348-47851367 | None:intergenic | 30.0% | |
| !! | CAGCACTCATAATTTTTAGA+CGG | + | chr6_4:47851785-47851804 | None:intergenic | 30.0% |
| TACAAAGTCTCAACACAAAA+TGG | + | chr6_4:47852289-47852308 | None:intergenic | 30.0% | |
| TGTGTTGAGACTTTGTATTT+AGG | - | chr6_4:47852292-47852311 | Msa0989890:intron | 30.0% | |
| GTGTTGAGACTTTGTATTTA+GGG | - | chr6_4:47852293-47852312 | Msa0989890:intron | 30.0% | |
| CAAAAAATGGGCAAATACTT+TGG | - | chr6_4:47852340-47852359 | Msa0989890:CDS | 30.0% | |
| AGTTTGGATATTGGTAAACA+TGG | - | chr6_4:47852374-47852393 | Msa0989890:CDS | 30.0% | |
| TGTTTGGATATTGGTAAACA+TGG | - | chr6_4:47852458-47852477 | Msa0989890:intron | 30.0% | |
| TATTTACCAGGTTTGGATTA+AGG | + | chr6_4:47852558-47852577 | None:intergenic | 30.0% | |
| ATTTCAGTATTTACCAGGTT+TGG | + | chr6_4:47852565-47852584 | None:intergenic | 30.0% | |
| AGAGAACTGATGTTGAAATT+CGG | - | chr6_4:47852623-47852642 | Msa0989890:intron | 30.0% | |
| !! | GTTTTTCAATATCTTGGTTG+AGG | - | chr6_4:47852840-47852859 | Msa0989890:intron | 30.0% |
| TGAAAATTGATGTCCGAAAT+TGG | - | chr6_4:47852890-47852909 | Msa0989890:CDS | 30.0% | |
| GCAATATCAATATCATCAAG+TGG | + | chr6_4:47853080-47853099 | None:intergenic | 30.0% | |
| ! | CTTGATGATATTGATATTGC+TGG | - | chr6_4:47853080-47853099 | Msa0989890:intron | 30.0% |
| ! | TATAGTTTTCTTACATGTGC+AGG | - | chr6_4:47853303-47853322 | Msa0989890:intron | 30.0% |
| !! | TTTGAAAGATTGATGATGCA+AGG | - | chr6_4:47853574-47853593 | Msa0989890:intron | 30.0% |
| TGTTGACAAATGAACTGAAA+TGG | - | chr6_4:47853610-47853629 | Msa0989890:intron | 30.0% | |
| CATATACAAGATTGTTTGTG+TGG | - | chr6_4:47853673-47853692 | Msa0989890:intron | 30.0% | |
| ! | AGTGATGTGATCTATTTTCT+AGG | - | chr6_4:47854036-47854055 | Msa0989890:intron | 30.0% |
| ! | GTTGAGTTGTATCTTGATGA+TGG | - | chr6_4:47850806-47850825 | Msa0989890:CDS | 35.0% |
| !! | TATCTTGATGATGGTAATGG+AGG | - | chr6_4:47850815-47850834 | Msa0989890:CDS | 35.0% |
| TAACACAAGAAACCAGTCAT+AGG | + | chr6_4:47851078-47851097 | None:intergenic | 35.0% | |
| TCCAGATACGAGATACAATA+CGG | + | chr6_4:47851231-47851250 | None:intergenic | 35.0% | |
| TTATAATTGCCAAGTAAGGG+TGG | + | chr6_4:47851846-47851865 | None:intergenic | 35.0% | |
| ! | GGAATGTTCTCTCTTTTCTA+CGG | - | chr6_4:47851931-47851950 | Msa0989890:intron | 35.0% |
| AAGGTGGATAAAACGTAACA+GGG | + | chr6_4:47852026-47852045 | None:intergenic | 35.0% | |
| TGTGACTAAGATGTTTCCAA+CGG | + | chr6_4:47852185-47852204 | None:intergenic | 35.0% | |
| GAATATCTTTGTTGAAGGTG+AGG | - | chr6_4:47852243-47852262 | Msa0989890:intron | 35.0% | |
| TTAAAGCCTTAATCCAAACC+TGG | - | chr6_4:47852549-47852568 | Msa0989890:intron | 35.0% | |
| !! | TGTTGCTGATTCTTTGTTGA+AGG | - | chr6_4:47852800-47852819 | Msa0989890:intron | 35.0% |
| TCTTTGTTGAAGGTGAACTT+TGG | - | chr6_4:47852810-47852829 | Msa0989890:intron | 35.0% | |
| ! | GGTTGAGGGTTTTACATTTT+TGG | - | chr6_4:47852855-47852874 | Msa0989890:CDS | 35.0% |
| ! | TGTGCAGGTACAATTTTCAT+TGG | - | chr6_4:47853318-47853337 | Msa0989890:intron | 35.0% |
| ! | CAGGTACAATTTTCATTGGT+GGG | - | chr6_4:47853322-47853341 | Msa0989890:intron | 35.0% |
| ! | AGGTACAATTTTCATTGGTG+GGG | - | chr6_4:47853323-47853342 | Msa0989890:intron | 35.0% |
| AGAGAGCAAATAAACCGTTT+AGG | + | chr6_4:47853543-47853562 | None:intergenic | 35.0% | |
| TCAGTTCATTTGTCAACAAG+AGG | + | chr6_4:47853608-47853627 | None:intergenic | 35.0% | |
| AGAATACTGAGTTCCTAAGA+GGG | + | chr6_4:47853755-47853774 | None:intergenic | 35.0% | |
| AAGAATACTGAGTTCCTAAG+AGG | + | chr6_4:47853756-47853775 | None:intergenic | 35.0% | |
| AGGGATACACAAACAAATCA+TGG | + | chr6_4:47853788-47853807 | None:intergenic | 35.0% | |
| TACTGTGTTTGTACGAACAA+TGG | - | chr6_4:47853976-47853995 | Msa0989890:intron | 35.0% | |
| ACTGTGTTTGTACGAACAAT+GGG | - | chr6_4:47853977-47853996 | Msa0989890:intron | 35.0% | |
| GCAATTCCAACACAATCAAG+CGG | + | chr6_4:47850749-47850768 | None:intergenic | 40.0% | |
| TGCGTTAGTAGAGTTGTCTT+TGG | - | chr6_4:47850766-47850785 | Msa0989890:CDS | 40.0% | |
| AGAGTTGTCTTTGGATGAAC+CGG | - | chr6_4:47850775-47850794 | Msa0989890:CDS | 40.0% | |
| TCCGTATTGTATCTCGTATC+TGG | - | chr6_4:47851227-47851246 | Msa0989890:intron | 40.0% | |
| ATCTCGTATCTGGACTTCAT+AGG | - | chr6_4:47851237-47851256 | Msa0989890:intron | 40.0% | |
| TCTCGTATCTGGACTTCATA+GGG | - | chr6_4:47851238-47851257 | Msa0989890:intron | 40.0% | |
| GGAATGTAAAAAGCAGGAGA+TGG | + | chr6_4:47851342-47851361 | None:intergenic | 40.0% | |
| AGGTGGATAAAACGTAACAG+GGG | + | chr6_4:47852025-47852044 | None:intergenic | 40.0% | |
| GAAGGTGGATAAAACGTAAC+AGG | + | chr6_4:47852027-47852046 | None:intergenic | 40.0% | |
| ! | TACGTTTTATCCACCTTCGT+CGG | - | chr6_4:47852029-47852048 | Msa0989890:intron | 40.0% |
| TGGAATGAGACAGATCAAGT+GGG | + | chr6_4:47852088-47852107 | None:intergenic | 40.0% | |
| CGAAAAGATTGAGTAACCGA+CGG | + | chr6_4:47852214-47852233 | None:intergenic | 40.0% | |
| ! | CGGTTACTCAATCTTTTCGT+CGG | - | chr6_4:47852215-47852234 | Msa0989890:intron | 40.0% |
| AGATTCAGATTCATCACACC+TGG | + | chr6_4:47852660-47852679 | None:intergenic | 40.0% | |
| ! | GCAGGTACAATTTTCATTGG+TGG | - | chr6_4:47853321-47853340 | Msa0989890:intron | 40.0% |
| AAGATTGTTTGTGTGGTGCT+TGG | - | chr6_4:47853680-47853699 | Msa0989890:intron | 40.0% | |
| AGGATTTGTGTATCCCTCTT+AGG | - | chr6_4:47853739-47853758 | Msa0989890:intron | 40.0% | |
| !! | TCCATGGCATTGTTCTAAGA+GGG | + | chr6_4:47853807-47853826 | None:intergenic | 40.0% |
| ! | ATCCATGGCATTGTTCTAAG+AGG | + | chr6_4:47853808-47853827 | None:intergenic | 40.0% |
| CTTAGAACAATGCCATGGAT+TGG | - | chr6_4:47853808-47853827 | Msa0989890:intron | 40.0% | |
| CACACAAAATCACCAATCCA+TGG | + | chr6_4:47853823-47853842 | None:intergenic | 40.0% | |
| CTGTGTTTGTACGAACAATG+GGG | - | chr6_4:47853978-47853997 | Msa0989890:intron | 40.0% | |
| CATGAACCGCTTGATTGTGT+TGG | - | chr6_4:47850740-47850759 | Msa0989890:CDS | 45.0% | |
| !! | TGATGATGGTAATGGAGGAG+AGG | - | chr6_4:47850820-47850839 | Msa0989890:CDS | 45.0% |
| !!! | TAGCACTGACGATGCTCTTT+TGG | - | chr6_4:47850972-47850991 | Msa0989890:intron | 45.0% |
| !!! | AGCACTGACGATGCTCTTTT+GGG | - | chr6_4:47850973-47850992 | Msa0989890:intron | 45.0% |
| AATCAAGATACGCTACGGCT+GGG | + | chr6_4:47851174-47851193 | None:intergenic | 45.0% | |
| AAATCAAGATACGCTACGGC+TGG | + | chr6_4:47851175-47851194 | None:intergenic | 45.0% | |
| ! | GATACGATACTGCACCGATA+CGG | + | chr6_4:47851209-47851228 | None:intergenic | 45.0% |
| ATTGCCAAGTAAGGGTGGTA+GGG | + | chr6_4:47851841-47851860 | None:intergenic | 45.0% | |
| AATTGCCAAGTAAGGGTGGT+AGG | + | chr6_4:47851842-47851861 | None:intergenic | 45.0% | |
| TGAAATCTTCTCTCCGACGA+AGG | + | chr6_4:47852045-47852064 | None:intergenic | 45.0% | |
| CTGGAATGAGACAGATCAAG+TGG | + | chr6_4:47852089-47852108 | None:intergenic | 45.0% | |
| ATGACGCAACAGTGATTGTG+AGG | + | chr6_4:47852121-47852140 | None:intergenic | 45.0% | |
| CTTAGTCACAATTCAGCCGT+CGG | - | chr6_4:47852195-47852214 | Msa0989890:intron | 45.0% | |
| TTCAGATTCATCACACCTGG+CGG | + | chr6_4:47852657-47852676 | None:intergenic | 45.0% | |
| !!! | TTTTCATTGGTGGGGTGTTG+TGG | - | chr6_4:47853331-47853350 | Msa0989890:intron | 45.0% |
| !! | TTTCATTGGTGGGGTGTTGT+GGG | - | chr6_4:47853332-47853351 | Msa0989890:intron | 45.0% |
| TGTCACAGCTGATGACATCT+TGG | - | chr6_4:47853433-47853452 | Msa0989890:intron | 45.0% | |
| GTCACAGCTGATGACATCTT+GGG | - | chr6_4:47853434-47853453 | Msa0989890:intron | 45.0% | |
| TCCCTCTTAGAACAATGCCA+TGG | - | chr6_4:47853803-47853822 | Msa0989890:intron | 45.0% | |
| TGTACGAACAATGGGGATGA+AGG | - | chr6_4:47853985-47854004 | Msa0989890:intron | 45.0% | |
| GTACGAACAATGGGGATGAA+GGG | - | chr6_4:47853986-47854005 | Msa0989890:intron | 45.0% | |
| AGAAGCTCCGCATTTGTCAT+TGG | - | chr6_4:47854205-47854224 | Msa0989890:intron | 45.0% | |
| GAAGCTCCGCATTTGTCATT+GGG | - | chr6_4:47854206-47854225 | Msa0989890:intron | 45.0% | |
| TCCGCATTTGTCATTGGGAT+TGG | - | chr6_4:47854211-47854230 | Msa0989890:intron | 45.0% | |
| CCCAATCCCAATGACAAATG+CGG | + | chr6_4:47854215-47854234 | None:intergenic | 45.0% | |
| CCGCATTTGTCATTGGGATT+GGG | - | chr6_4:47854212-47854231 | Msa0989890:intron | 45.0% | |
| ATTGGGTCAAACTGCATCCT+TGG | - | chr6_4:47854229-47854248 | Msa0989890:intron | 45.0% | |
| TGCTGTTGATGTTGGCGTTT+GGG | - | chr6_4:47854268-47854287 | Msa0989890:CDS | 45.0% | |
| TAATACCCTGGTGGCTTCAT+TGG | + | chr6_4:47854329-47854348 | None:intergenic | 45.0% | |
| ATGTGCTACGAGCCTATGAC+TGG | - | chr6_4:47851063-47851082 | Msa0989890:intron | 50.0% | |
| TTGCCAAGTAAGGGTGGTAG+GGG | + | chr6_4:47851840-47851859 | None:intergenic | 50.0% | |
| AATCTTCTCTCCGACGAAGG+TGG | + | chr6_4:47852042-47852061 | None:intergenic | 50.0% | |
| AAGTGGGACGTCGACGAAAA+TGG | + | chr6_4:47852072-47852091 | None:intergenic | 50.0% | |
| CAACAGTGATTGTGAGGCGA+CGG | + | chr6_4:47852115-47852134 | None:intergenic | 50.0% | |
| GTTTCCAACGGTGAGAGTGA+GGG | + | chr6_4:47852173-47852192 | None:intergenic | 50.0% | |
| TGTTTCCAACGGTGAGAGTG+AGG | + | chr6_4:47852174-47852193 | None:intergenic | 50.0% | |
| ! | GGGTGTTGTGGGTTGCAATT+AGG | - | chr6_4:47853343-47853362 | Msa0989890:intron | 50.0% |
| TGCAATGACAAACCAGCGTG+TGG | - | chr6_4:47853841-47853860 | Msa0989890:intron | 50.0% | |
| ACAAACCAGCGTGTGGACAA+TGG | - | chr6_4:47853848-47853867 | Msa0989890:intron | 50.0% | |
| ATCCTTGGAGCCTGTTGTTG+AGG | - | chr6_4:47854244-47854263 | Msa0989890:CDS | 50.0% | |
| TCAACAGCAGCCTCAACAAC+AGG | + | chr6_4:47854257-47854276 | None:intergenic | 50.0% | |
| GTTGAGGCTGCTGTTGATGT+TGG | - | chr6_4:47854260-47854279 | Msa0989890:CDS | 50.0% | |
| CTGCTGTTGATGTTGGCGTT+TGG | - | chr6_4:47854267-47854286 | Msa0989890:CDS | 50.0% | |
| ATCAGCCGCAATTCCAGCAA+GGG | + | chr6_4:47854294-47854313 | None:intergenic | 50.0% | |
| AATCAGCCGCAATTCCAGCA+AGG | + | chr6_4:47854295-47854314 | None:intergenic | 50.0% | |
| AAGCTACCAATGAAGCCACC+AGG | - | chr6_4:47854320-47854339 | Msa0989890:CDS | 50.0% | |
| AGCTACCAATGAAGCCACCA+GGG | - | chr6_4:47854321-47854340 | Msa0989890:CDS | 50.0% | |
| GCTGATACGTGAACCACCTC+AGG | - | chr6_4:47851801-47851820 | Msa0989890:intron | 55.0% | |
| GATACGTGAACCACCTCAGG+TGG | - | chr6_4:47851804-47851823 | Msa0989890:intron | 55.0% | |
| AAGTAAGGGTGGTAGGGGAG+TGG | + | chr6_4:47851835-47851854 | None:intergenic | 55.0% | |
| ACTCCCCTACCACCCTTACT+TGG | - | chr6_4:47851834-47851853 | Msa0989890:intron | 55.0% | |
| TGGGACGTCGACGAAAATGG+TGG | + | chr6_4:47852069-47852088 | None:intergenic | 55.0% | |
| GTGAGAGTGAGGGATCAAGG+AGG | + | chr6_4:47852163-47852182 | None:intergenic | 55.0% | |
| ACGGTGAGAGTGAGGGATCA+AGG | + | chr6_4:47852166-47852185 | None:intergenic | 55.0% | |
| TGATCCCTCACTCTCACCGT+TGG | - | chr6_4:47852166-47852185 | Msa0989890:intron | 55.0% | |
| ATTCATCACACCTGGCGGAG+GGG | + | chr6_4:47852652-47852671 | None:intergenic | 55.0% | |
| GATTCATCACACCTGGCGGA+GGG | + | chr6_4:47852653-47852672 | None:intergenic | 55.0% | |
| AGATTCATCACACCTGGCGG+AGG | + | chr6_4:47852654-47852673 | None:intergenic | 55.0% | |
| TCGTTACAGCCTACGTGCCT+TGG | - | chr6_4:47852685-47852704 | Msa0989890:intron | 55.0% | |
| CAACGATGAGAGTCACGCGA+CGG | + | chr6_4:47852716-47852735 | None:intergenic | 55.0% | |
| CATTGCCATTGTCCACACGC+TGG | + | chr6_4:47853856-47853875 | None:intergenic | 55.0% | |
| AGCCTCAACAACAGGCTCCA+AGG | + | chr6_4:47854249-47854268 | None:intergenic | 55.0% | |
| TTGGGCCCTTGCTGGAATTG+CGG | - | chr6_4:47854286-47854305 | Msa0989890:CDS | 55.0% | |
| AGTGGTACGTCCACCTGAGG+TGG | + | chr6_4:47851817-47851836 | None:intergenic | 60.0% | |
| CAGTGATTGTGAGGCGACGG+TGG | + | chr6_4:47852112-47852131 | None:intergenic | 60.0% | |
| TTCATCACACCTGGCGGAGG+GGG | + | chr6_4:47852651-47852670 | None:intergenic | 60.0% | |
| ACGGCGAATCCAAGGCACGT+AGG | + | chr6_4:47852697-47852716 | None:intergenic | 60.0% | |
| CGTCGCGTGACTCTCATCGT+TGG | - | chr6_4:47852714-47852733 | Msa0989890:intron | 60.0% | |
| GGGAGTGGTACGTCCACCTG+AGG | + | chr6_4:47851820-47851839 | None:intergenic | 65.0% | |
| GATTGTGAGGCGACGGTGGC+TGG | + | chr6_4:47852108-47852127 | None:intergenic | 65.0% | |
| GTCACGCGACGGCGAATCCA+AGG | + | chr6_4:47852705-47852724 | None:intergenic | 65.0% | |
| GTTGGCGTTTGGGCCCTTGC+TGG | - | chr6_4:47854278-47854297 | Msa0989890:CDS | 65.0% | |
| !! | AATTCGGTGCCCCCTCCGCC+AGG | - | chr6_4:47852639-47852658 | Msa0989890:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 47850716 | 47854349 | 47850716 | ID=Msa0989890;Name=Msa0989890 |
| chr6_4 | mRNA | 47850716 | 47854349 | 47850716 | ID=Msa0989890-mRNA-1;Parent=Msa0989890;Name=Msa0989890-mRNA-1;_AED=0.70;_eAED=0.88;_QI=0|0|0.25|0.5|1|1|4|0|145 |
| chr6_4 | exon | 47854238 | 47854349 | 47854238 | ID=Msa0989890-mRNA-1:exon:10647;Parent=Msa0989890-mRNA-1 |
| chr6_4 | exon | 47852849 | 47852956 | 47852849 | ID=Msa0989890-mRNA-1:exon:10646;Parent=Msa0989890-mRNA-1 |
| chr6_4 | exon | 47852330 | 47852404 | 47852330 | ID=Msa0989890-mRNA-1:exon:10645;Parent=Msa0989890-mRNA-1 |
| chr6_4 | exon | 47850716 | 47850858 | 47850716 | ID=Msa0989890-mRNA-1:exon:10644;Parent=Msa0989890-mRNA-1 |
| chr6_4 | CDS | 47854238 | 47854349 | 47854238 | ID=Msa0989890-mRNA-1:cds;Parent=Msa0989890-mRNA-1 |
| chr6_4 | CDS | 47852849 | 47852956 | 47852849 | ID=Msa0989890-mRNA-1:cds;Parent=Msa0989890-mRNA-1 |
| chr6_4 | CDS | 47852330 | 47852404 | 47852330 | ID=Msa0989890-mRNA-1:cds;Parent=Msa0989890-mRNA-1 |
| chr6_4 | CDS | 47850716 | 47850858 | 47850716 | ID=Msa0989890-mRNA-1:cds;Parent=Msa0989890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
