Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0362420 | 0.823899 | 1.080405e-53 | -8.615850e-47 |
| Msa0016570 | Msa0362420 | 0.817627 | 2.989787e-52 | -8.615850e-47 |
| Msa0016580 | Msa0362420 | 0.820808 | 5.640671e-53 | -8.615850e-47 |
| Msa0064970 | Msa0362420 | 0.803504 | 3.378153e-49 | -8.615850e-47 |
| Msa0102070 | Msa0362420 | 0.806696 | 7.255181e-50 | -8.615850e-47 |
| Msa0110260 | Msa0362420 | 0.801816 | 7.531820e-49 | -8.615850e-47 |
| Msa0110270 | Msa0362420 | 0.828575 | 8.330680e-55 | -8.615850e-47 |
| Msa0142220 | Msa0362420 | 0.807129 | 5.878217e-50 | -8.615850e-47 |
| Msa0153910 | Msa0362420 | 0.811468 | 6.897103e-51 | -8.615850e-47 |
| Msa0227480 | Msa0362420 | 0.800093 | 1.693811e-48 | -8.615850e-47 |
| Msa0232850 | Msa0362420 | 0.825212 | 5.302975e-54 | -8.615850e-47 |
| Msa0267000 | Msa0362420 | 0.824478 | 7.897947e-54 | -8.615850e-47 |
| Msa0267010 | Msa0362420 | 0.836140 | 1.114304e-56 | -8.615850e-47 |
| Msa0270520 | Msa0362420 | 0.814618 | 1.405970e-51 | -8.615850e-47 |
| Msa0342240 | Msa0362420 | 0.834530 | 2.841212e-56 | -8.615850e-47 |
| Msa0360510 | Msa0362420 | 0.844360 | 7.935224e-59 | -8.615850e-47 |
| Msa0362420 | Msa0365500 | 0.844248 | 8.505667e-59 | -8.615850e-47 |
| Msa0362420 | Msa0414410 | 0.805896 | 1.069598e-49 | -8.615850e-47 |
| Msa0362420 | Msa0414420 | 0.824295 | 8.723629e-54 | -8.615850e-47 |
| Msa0362420 | Msa0452900 | 0.841296 | 5.178953e-58 | -8.615850e-47 |
| Msa0362420 | Msa0564890 | 0.808738 | 2.672908e-50 | -8.615850e-47 |
| Msa0362420 | Msa0604350 | 0.809779 | 1.598393e-50 | -8.615850e-47 |
| Msa0362420 | Msa0636170 | 0.831402 | 1.703708e-55 | -8.615850e-47 |
| Msa0362420 | Msa0678930 | 0.806970 | 6.349130e-50 | -8.615850e-47 |
| Msa0362420 | Msa0729800 | 0.803576 | 3.264098e-49 | -8.615850e-47 |
| Msa0362420 | Msa0743810 | 0.852767 | 3.718243e-61 | -8.615850e-47 |
| Msa0362420 | Msa0745060 | 0.834524 | 2.851163e-56 | -8.615850e-47 |
| Msa0362420 | Msa0783160 | 0.830958 | 2.189764e-55 | -8.615850e-47 |
| Msa0362420 | Msa0787600 | 0.805453 | 1.325553e-49 | -8.615850e-47 |
| Msa0362420 | Msa0808010 | 0.824607 | 7.364346e-54 | -8.615850e-47 |
| Msa0362420 | Msa0808020 | 0.833157 | 6.267619e-56 | -8.615850e-47 |
| Msa0362420 | Msa0825860 | 0.829578 | 4.760208e-55 | -8.615850e-47 |
| Msa0362420 | Msa0865320 | 0.807772 | 4.293017e-50 | -8.615850e-47 |
| Msa0362420 | Msa0885290 | 0.814040 | 1.886060e-51 | -8.615850e-47 |
| Msa0362420 | Msa0888370 | 0.803556 | 3.294326e-49 | -8.615850e-47 |
| Msa0362420 | Msa0989890 | 0.857688 | 1.376752e-62 | -8.615850e-47 |
| Msa0362420 | Msa1016280 | 0.818676 | 1.731398e-52 | -8.615850e-47 |
| Msa0362420 | Msa1025360 | 0.843355 | 1.474117e-58 | -8.615850e-47 |
| Msa0362420 | Msa1025370 | 0.831780 | 1.374744e-55 | -8.615850e-47 |
| Msa0362420 | Msa1044830 | 0.828737 | 7.611645e-55 | -8.615850e-47 |
| Msa0362420 | Msa1044840 | 0.844715 | 6.366141e-59 | -8.615850e-47 |
| Msa0362420 | Msa1092990 | 0.834924 | 2.262106e-56 | -8.615850e-47 |
| Msa0362420 | Msa1100980 | 0.850325 | 1.826340e-60 | -8.615850e-47 |
| Msa0362420 | Msa1109440 | 0.804957 | 1.683583e-49 | -8.615850e-47 |
| Msa0362420 | Msa1135740 | 0.828167 | 1.045068e-54 | -8.615850e-47 |
| Msa0362420 | Msa1146110 | 0.857214 | 1.901040e-62 | -8.615850e-47 |
| Msa0362420 | Msa1187940 | 0.834312 | 3.223928e-56 | -8.615850e-47 |
| Msa0362420 | Msa1187950 | 0.828294 | 9.740722e-55 | -8.615850e-47 |
| Msa0362420 | Msa1192640 | 0.828629 | 8.083843e-55 | -8.615850e-47 |
| Msa0362420 | Msa1269670 | 0.824140 | 9.482771e-54 | -8.615850e-47 |
| Msa0362420 | Msa1270230 | 0.833974 | 3.918350e-56 | -8.615850e-47 |
| Msa0362420 | Msa1270240 | 0.818356 | 2.045303e-52 | -8.615850e-47 |
| Msa0362420 | Msa1270270 | 0.818025 | 2.430722e-52 | -8.615850e-47 |
| Msa0362420 | Msa1283330 | 0.829615 | 4.661979e-55 | -8.615850e-47 |
| Msa0362420 | Msa1285540 | 0.815394 | 9.453344e-52 | -8.615850e-47 |
| Msa0362420 | Msa1285930 | 0.835827 | 1.337714e-56 | -8.615850e-47 |
| Msa0362420 | Msa1287800 | 0.818050 | 2.399441e-52 | -8.615850e-47 |
| Msa0362420 | Msa1287810 | 0.842636 | 2.291127e-58 | -8.615850e-47 |
| Msa0362420 | Msa1307890 | 0.806012 | 1.011258e-49 | -8.615850e-47 |
| Msa0362420 | Msa1344520 | 0.803349 | 3.637385e-49 | -8.615850e-47 |
| Msa0362420 | Msa1404000 | 0.811899 | 5.559036e-51 | -8.615850e-47 |
| Msa0362420 | Msa1433120 | 0.822233 | 2.643290e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCTTGAAGAAGAAAA+AGG | 0.247818 | 3_1:-53600674 | Msa0362420:CDS |
| GATAATGTATGGGTCGAGTA+TGG | 0.268832 | 3_1:+53600477 | None:intergenic |
| TCTTCTTCAAATAAGCTTAG+AGG | 0.278478 | 3_1:-53600437 | Msa0362420:three_prime_UTR |
| AAGTGGGACGTCGACGAAAA+TGG | 0.304195 | 3_1:+53602495 | None:intergenic |
| TTGCATGTTTGACATATTCA+TGG | 0.312722 | 3_1:+53600509 | None:intergenic |
| TCTGCACAAATGATAATGTA+TGG | 0.389325 | 3_1:+53600466 | None:intergenic |
| ACTGTGTTTGTACGAACAAT+GGG | 0.405702 | 3_1:-53600619 | Msa0362420:CDS |
| GATTGTGAGGCGACGGTGGC+TGG | 0.437589 | 3_1:+53602459 | None:intergenic |
| GAAGGTGGATAAAACGGAAC+AGG | 0.446506 | 3_1:+53602540 | None:intergenic |
| TCCGACGAAGGTGGATAAAA+CGG | 0.503144 | 3_1:+53602534 | None:intergenic |
| TGTACGAACAATGGGGATGA+AGG | 0.551846 | 3_1:-53600611 | Msa0362420:CDS |
| ATAATGTATGGGTCGAGTAT+GGG | 0.574357 | 3_1:+53600478 | None:intergenic |
| TACTGTGTTTGTACGAACAA+TGG | 0.577699 | 3_1:-53600620 | Msa0362420:CDS |
| CTGCACAAATGATAATGTAT+GGG | 0.584221 | 3_1:+53600467 | None:intergenic |
| TGAAATCTTCTCTCCGACGA+AGG | 0.587439 | 3_1:+53602522 | None:intergenic |
| AATCTTCTCTCCGACGAAGG+TGG | 0.603824 | 3_1:+53602525 | None:intergenic |
| CTGGAATGAGACAGATCAAG+TGG | 0.604046 | 3_1:+53602478 | None:intergenic |
| TGGGACGTCGACGAAAATGG+TGG | 0.623020 | 3_1:+53602498 | None:intergenic |
| GTACGAACAATGGGGATGAA+GGG | 0.623308 | 3_1:-53600610 | Msa0362420:CDS |
| CAGTGATTGTGAGGCGACGG+TGG | 0.624540 | 3_1:+53602455 | None:intergenic |
| ATGACGCAACAGTGATTGTG+AGG | 0.630200 | 3_1:+53602446 | None:intergenic |
| CAACAGTGATTGTGAGGCGA+CGG | 0.639124 | 3_1:+53602452 | None:intergenic |
| AAGGTGGATAAAACGGAACA+GGG | 0.666087 | 3_1:+53602541 | None:intergenic |
| TGGAATGAGACAGATCAAGT+GGG | 0.695410 | 3_1:+53602479 | None:intergenic |
| CTGTGTTTGTACGAACAATG+GGG | 0.773596 | 3_1:-53600618 | Msa0362420:CDS |
| AGGTGGATAAAACGGAACAG+GGG | 0.779375 | 3_1:+53602542 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAATTTGTTTGGATAT+TGG | - | chr3_1:53600867-53600886 | Msa0362420:intron | 15.0% |
| !! | ATGTTGTTAATTATTTCAAA+AGG | - | chr3_1:53601011-53601030 | Msa0362420:intron | 15.0% |
| !! | TGTTGTTAATTATTTCAAAA+GGG | - | chr3_1:53601012-53601031 | Msa0362420:intron | 15.0% |
| !!! | AAAATTGTTTTTCAATATCT+TGG | - | chr3_1:53601252-53601271 | Msa0362420:intron | 15.0% |
| !! | AAAATTTATACATGTGATAT+TGG | - | chr3_1:53601561-53601580 | Msa0362420:intron | 15.0% |
| !!! | TTTTAAATTTGTTTGGATAT+TGG | - | chr3_1:53600867-53600886 | Msa0362420:intron | 15.0% |
| !! | ATGTTGTTAATTATTTCAAA+AGG | - | chr3_1:53601011-53601030 | Msa0362420:intron | 15.0% |
| !! | TGTTGTTAATTATTTCAAAA+GGG | - | chr3_1:53601012-53601031 | Msa0362420:intron | 15.0% |
| !!! | AAAATTGTTTTTCAATATCT+TGG | - | chr3_1:53601252-53601271 | Msa0362420:intron | 15.0% |
| !! | AAAATTTATACATGTGATAT+TGG | - | chr3_1:53601561-53601580 | Msa0362420:intron | 15.0% |
| !! | TTTGGATAACAAAATTAGTT+TGG | - | chr3_1:53600776-53600795 | Msa0362420:intron | 20.0% |
| !!! | AACAAAATTAGTTTGGATAT+TGG | - | chr3_1:53600783-53600802 | Msa0362420:intron | 20.0% |
| !!! | CTCTGATTTTTAAATTTGTT+TGG | - | chr3_1:53600860-53600879 | Msa0362420:intron | 20.0% |
| !! | CAAATTTCAAAATCAAAATG+TGG | + | chr3_1:53600944-53600963 | None:intergenic | 20.0% |
| !! | ATGTAATAATAAGTCAAAAG+TGG | - | chr3_1:53601619-53601638 | Msa0362420:intron | 20.0% |
| !! | TGTAATAATAAGTCAAAAGT+GGG | - | chr3_1:53601620-53601639 | Msa0362420:intron | 20.0% |
| !!! | ATGTTTTTGACATGAAAATA+TGG | - | chr3_1:53601653-53601672 | Msa0362420:intron | 20.0% |
| !!! | GTTTATTGTTATTTCCTAAA+CGG | - | chr3_1:53601944-53601963 | Msa0362420:intron | 20.0% |
| !! | GCTAGCATATTAAAATATAA+AGG | - | chr3_1:53602120-53602139 | Msa0362420:intron | 20.0% |
| !! | GCATATTAAAATATAAAGGA+TGG | - | chr3_1:53602124-53602143 | Msa0362420:intron | 20.0% |
| !! | AAATTTCTTGAAGAAGAAAA+AGG | - | chr3_1:53602308-53602327 | Msa0362420:intron | 20.0% |
| !! | AATTTCTTGAAGAAGAAAAA+GGG | - | chr3_1:53602309-53602328 | Msa0362420:intron | 20.0% |
| !! | TTTGGATAACAAAATTAGTT+TGG | - | chr3_1:53600776-53600795 | Msa0362420:intron | 20.0% |
| !!! | AACAAAATTAGTTTGGATAT+TGG | - | chr3_1:53600783-53600802 | Msa0362420:intron | 20.0% |
| !!! | CTCTGATTTTTAAATTTGTT+TGG | - | chr3_1:53600860-53600879 | Msa0362420:intron | 20.0% |
| !! | CAAATTTCAAAATCAAAATG+TGG | + | chr3_1:53600944-53600963 | None:intergenic | 20.0% |
| !! | ATGTAATAATAAGTCAAAAG+TGG | - | chr3_1:53601619-53601638 | Msa0362420:intron | 20.0% |
| !! | TGTAATAATAAGTCAAAAGT+GGG | - | chr3_1:53601620-53601639 | Msa0362420:intron | 20.0% |
| !!! | ATGTTTTTGACATGAAAATA+TGG | - | chr3_1:53601653-53601672 | Msa0362420:intron | 20.0% |
| !!! | GTTTATTGTTATTTCCTAAA+CGG | - | chr3_1:53601944-53601963 | Msa0362420:intron | 20.0% |
| !! | GCTAGCATATTAAAATATAA+AGG | - | chr3_1:53602120-53602139 | Msa0362420:intron | 20.0% |
| !! | GCATATTAAAATATAAAGGA+TGG | - | chr3_1:53602124-53602143 | Msa0362420:intron | 20.0% |
| !! | AAATTTCTTGAAGAAGAAAA+AGG | - | chr3_1:53602308-53602327 | Msa0362420:intron | 20.0% |
| !! | AATTTCTTGAAGAAGAAAAA+GGG | - | chr3_1:53602309-53602328 | Msa0362420:intron | 20.0% |
| ! | AAATCGAATATCTTTGTTGA+AGG | - | chr3_1:53600656-53600675 | Msa0362420:CDS | 25.0% |
| !! | TGAAGTTTGTTCTCAAAAAA+TGG | - | chr3_1:53600745-53600764 | Msa0362420:intron | 25.0% |
| !! | GAAGTTTGTTCTCAAAAAAT+GGG | - | chr3_1:53600746-53600765 | Msa0362420:intron | 25.0% |
| ! | AAACATGGTTATGTGATTAT+AGG | - | chr3_1:53600891-53600910 | Msa0362420:intron | 25.0% |
| ! | AGAAAATTTCAGTATTTACC+AGG | + | chr3_1:53600988-53601007 | None:intergenic | 25.0% |
| ! | TGCTTAACTATCTTAATCAA+TGG | - | chr3_1:53601185-53601204 | Msa0362420:intron | 25.0% |
| !!! | TTTTTCAATATCTTGGTTGA+GGG | - | chr3_1:53601259-53601278 | Msa0362420:intron | 25.0% |
| ! | CATTTAGTGTTAACCAATTT+CGG | + | chr3_1:53601324-53601343 | None:intergenic | 25.0% |
| ! | GTTAACACTAAATGTAGTTT+AGG | - | chr3_1:53601330-53601349 | Msa0362420:intron | 25.0% |
| !!! | TAGCTTTGAATTAGTTATGA+TGG | - | chr3_1:53601379-53601398 | Msa0362420:intron | 25.0% |
| !!! | TTAGTTATGATGGATTTAGA+TGG | - | chr3_1:53601389-53601408 | Msa0362420:intron | 25.0% |
| ! | AATCCAATCTATGTTTGATT+AGG | - | chr3_1:53601529-53601548 | Msa0362420:intron | 25.0% |
| ! | TATCCTAATCAAACATAGAT+TGG | + | chr3_1:53601535-53601554 | None:intergenic | 25.0% |
| ! | ATTTATACATGTGATATTGG+AGG | - | chr3_1:53601564-53601583 | Msa0362420:intron | 25.0% |
| ! | TTTATACATGTGATATTGGA+GGG | - | chr3_1:53601565-53601584 | Msa0362420:intron | 25.0% |
| ! | TGAAAATATGGTTGAAATAG+AGG | - | chr3_1:53601665-53601684 | Msa0362420:intron | 25.0% |
| ! | TTATGTGTATAAACTAGTTG+AGG | - | chr3_1:53601697-53601716 | Msa0362420:intron | 25.0% |
| !!! | TCAATGACTTGTAGAAATTT+TGG | - | chr3_1:53601894-53601913 | Msa0362420:intron | 25.0% |
| !! | AAATTTTGGACAAATGCATA+AGG | - | chr3_1:53601908-53601927 | Msa0362420:intron | 25.0% |
| ! | AAATCGAATATCTTTGTTGA+AGG | - | chr3_1:53600656-53600675 | Msa0362420:CDS | 25.0% |
| !! | TGAAGTTTGTTCTCAAAAAA+TGG | - | chr3_1:53600745-53600764 | Msa0362420:intron | 25.0% |
| !! | GAAGTTTGTTCTCAAAAAAT+GGG | - | chr3_1:53600746-53600765 | Msa0362420:intron | 25.0% |
| ! | AAACATGGTTATGTGATTAT+AGG | - | chr3_1:53600891-53600910 | Msa0362420:intron | 25.0% |
| ! | AGAAAATTTCAGTATTTACC+AGG | + | chr3_1:53600988-53601007 | None:intergenic | 25.0% |
| ! | TGCTTAACTATCTTAATCAA+TGG | - | chr3_1:53601185-53601204 | Msa0362420:intron | 25.0% |
| !!! | TTTTTCAATATCTTGGTTGA+GGG | - | chr3_1:53601259-53601278 | Msa0362420:intron | 25.0% |
| ! | CATTTAGTGTTAACCAATTT+CGG | + | chr3_1:53601324-53601343 | None:intergenic | 25.0% |
| ! | GTTAACACTAAATGTAGTTT+AGG | - | chr3_1:53601330-53601349 | Msa0362420:intron | 25.0% |
| !!! | TAGCTTTGAATTAGTTATGA+TGG | - | chr3_1:53601379-53601398 | Msa0362420:intron | 25.0% |
| !!! | TTAGTTATGATGGATTTAGA+TGG | - | chr3_1:53601389-53601408 | Msa0362420:intron | 25.0% |
| ! | AATCCAATCTATGTTTGATT+AGG | - | chr3_1:53601529-53601548 | Msa0362420:intron | 25.0% |
| ! | TATCCTAATCAAACATAGAT+TGG | + | chr3_1:53601535-53601554 | None:intergenic | 25.0% |
| ! | ATTTATACATGTGATATTGG+AGG | - | chr3_1:53601564-53601583 | Msa0362420:intron | 25.0% |
| ! | TTTATACATGTGATATTGGA+GGG | - | chr3_1:53601565-53601584 | Msa0362420:intron | 25.0% |
| ! | TGAAAATATGGTTGAAATAG+AGG | - | chr3_1:53601665-53601684 | Msa0362420:intron | 25.0% |
| ! | TTATGTGTATAAACTAGTTG+AGG | - | chr3_1:53601697-53601716 | Msa0362420:intron | 25.0% |
| !!! | TCAATGACTTGTAGAAATTT+TGG | - | chr3_1:53601894-53601913 | Msa0362420:intron | 25.0% |
| !! | AAATTTTGGACAAATGCATA+AGG | - | chr3_1:53601908-53601927 | Msa0362420:intron | 25.0% |
| TACAAAGTCTCAACACAAAA+TGG | + | chr3_1:53600707-53600726 | None:intergenic | 30.0% | |
| TGTGTTGAGACTTTGTATTT+AGG | - | chr3_1:53600710-53600729 | Msa0362420:intron | 30.0% | |
| GTGTTGAGACTTTGTATTTA+GGG | - | chr3_1:53600711-53600730 | Msa0362420:intron | 30.0% | |
| CAAAAAATGGGCAAATACTT+TGG | - | chr3_1:53600758-53600777 | Msa0362420:intron | 30.0% | |
| AGTTTGGATATTGGTAAACA+TGG | - | chr3_1:53600792-53600811 | Msa0362420:intron | 30.0% | |
| TGTTTGGATATTGGTAAACA+TGG | - | chr3_1:53600876-53600895 | Msa0362420:intron | 30.0% | |
| TATTTACCAGGTTTGGATTA+AGG | + | chr3_1:53600976-53600995 | None:intergenic | 30.0% | |
| ATTTCAGTATTTACCAGGTT+TGG | + | chr3_1:53600983-53601002 | None:intergenic | 30.0% | |
| AGAGAACTGATGTTGAAATT+CGG | - | chr3_1:53601041-53601060 | Msa0362420:intron | 30.0% | |
| !! | GTTTTTCAATATCTTGGTTG+AGG | - | chr3_1:53601258-53601277 | Msa0362420:intron | 30.0% |
| TGAAAATTGATGTCCGAAAT+TGG | - | chr3_1:53601308-53601327 | Msa0362420:intron | 30.0% | |
| GCAATATCAATATCATCAAG+TGG | + | chr3_1:53601498-53601517 | None:intergenic | 30.0% | |
| ! | CTTGATGATATTGATATTGC+TGG | - | chr3_1:53601498-53601517 | Msa0362420:intron | 30.0% |
| ! | TATAGTTTTCTTACATGTGC+AGG | - | chr3_1:53601721-53601740 | Msa0362420:intron | 30.0% |
| TGTTGACAAATGAACTGAAA+TGG | - | chr3_1:53602028-53602047 | Msa0362420:intron | 30.0% | |
| CATATACAAGATTGTTTGTG+TGG | - | chr3_1:53602091-53602110 | Msa0362420:intron | 30.0% | |
| ! | AGTGATGTGATCTATTTTCT+AGG | - | chr3_1:53602422-53602441 | Msa0362420:intron | 30.0% |
| TTGCATGTTTGACATATTCA+TGG | + | chr3_1:53602476-53602495 | None:intergenic | 30.0% | |
| ! | CTGCACAAATGATAATGTAT+GGG | + | chr3_1:53602518-53602537 | None:intergenic | 30.0% |
| ! | TCTGCACAAATGATAATGTA+TGG | + | chr3_1:53602519-53602538 | None:intergenic | 30.0% |
| TCTTCTTCAAATAAGCTTAG+AGG | - | chr3_1:53602545-53602564 | Msa0362420:CDS | 30.0% | |
| TACAAAGTCTCAACACAAAA+TGG | + | chr3_1:53600707-53600726 | None:intergenic | 30.0% | |
| TGTGTTGAGACTTTGTATTT+AGG | - | chr3_1:53600710-53600729 | Msa0362420:intron | 30.0% | |
| GTGTTGAGACTTTGTATTTA+GGG | - | chr3_1:53600711-53600730 | Msa0362420:intron | 30.0% | |
| CAAAAAATGGGCAAATACTT+TGG | - | chr3_1:53600758-53600777 | Msa0362420:intron | 30.0% | |
| AGTTTGGATATTGGTAAACA+TGG | - | chr3_1:53600792-53600811 | Msa0362420:intron | 30.0% | |
| TGTTTGGATATTGGTAAACA+TGG | - | chr3_1:53600876-53600895 | Msa0362420:intron | 30.0% | |
| TATTTACCAGGTTTGGATTA+AGG | + | chr3_1:53600976-53600995 | None:intergenic | 30.0% | |
| ATTTCAGTATTTACCAGGTT+TGG | + | chr3_1:53600983-53601002 | None:intergenic | 30.0% | |
| AGAGAACTGATGTTGAAATT+CGG | - | chr3_1:53601041-53601060 | Msa0362420:intron | 30.0% | |
| !! | GTTTTTCAATATCTTGGTTG+AGG | - | chr3_1:53601258-53601277 | Msa0362420:intron | 30.0% |
| TGAAAATTGATGTCCGAAAT+TGG | - | chr3_1:53601308-53601327 | Msa0362420:intron | 30.0% | |
| GCAATATCAATATCATCAAG+TGG | + | chr3_1:53601498-53601517 | None:intergenic | 30.0% | |
| ! | CTTGATGATATTGATATTGC+TGG | - | chr3_1:53601498-53601517 | Msa0362420:intron | 30.0% |
| ! | TATAGTTTTCTTACATGTGC+AGG | - | chr3_1:53601721-53601740 | Msa0362420:intron | 30.0% |
| TGTTGACAAATGAACTGAAA+TGG | - | chr3_1:53602028-53602047 | Msa0362420:intron | 30.0% | |
| CATATACAAGATTGTTTGTG+TGG | - | chr3_1:53602091-53602110 | Msa0362420:intron | 30.0% | |
| ! | AGTGATGTGATCTATTTTCT+AGG | - | chr3_1:53602422-53602441 | Msa0362420:intron | 30.0% |
| TTGCATGTTTGACATATTCA+TGG | + | chr3_1:53602476-53602495 | None:intergenic | 30.0% | |
| ! | CTGCACAAATGATAATGTAT+GGG | + | chr3_1:53602518-53602537 | None:intergenic | 30.0% |
| ! | TCTGCACAAATGATAATGTA+TGG | + | chr3_1:53602519-53602538 | None:intergenic | 30.0% |
| TCTTCTTCAAATAAGCTTAG+AGG | - | chr3_1:53602545-53602564 | Msa0362420:CDS | 30.0% | |
| ! | GGAATGTTCTCTCTTTTCTA+CGG | - | chr3_1:53600375-53600394 | Msa0362420:three_prime_UTR | 35.0% |
| TGTGACTAAGATGTTTCCAA+CGG | + | chr3_1:53600603-53600622 | None:intergenic | 35.0% | |
| GAATATCTTTGTTGAAGGTG+AGG | - | chr3_1:53600661-53600680 | Msa0362420:CDS | 35.0% | |
| TTAAAGCCTTAATCCAAACC+TGG | - | chr3_1:53600967-53600986 | Msa0362420:intron | 35.0% | |
| !! | TGTTGCTGATTCTTTGTTGA+AGG | - | chr3_1:53601218-53601237 | Msa0362420:intron | 35.0% |
| TCTTTGTTGAAGGTGAACTT+TGG | - | chr3_1:53601228-53601247 | Msa0362420:intron | 35.0% | |
| ! | GGTTGAGGGTTTTACATTTT+TGG | - | chr3_1:53601273-53601292 | Msa0362420:intron | 35.0% |
| ! | TGTGCAGGTACAATTTTCAT+TGG | - | chr3_1:53601736-53601755 | Msa0362420:intron | 35.0% |
| ! | CAGGTACAATTTTCATTGGT+GGG | - | chr3_1:53601740-53601759 | Msa0362420:intron | 35.0% |
| ! | AGGTACAATTTTCATTGGTG+GGG | - | chr3_1:53601741-53601760 | Msa0362420:intron | 35.0% |
| AGAGAGCAAATAAACCGTTT+AGG | + | chr3_1:53601961-53601980 | None:intergenic | 35.0% | |
| TTTGAAAGATTGACGATGCA+AGG | - | chr3_1:53601992-53602011 | Msa0362420:intron | 35.0% | |
| TCAGTTCATTTGTCAACAAG+AGG | + | chr3_1:53602026-53602045 | None:intergenic | 35.0% | |
| AGGGATACACAAACAAATCA+TGG | + | chr3_1:53602174-53602193 | None:intergenic | 35.0% | |
| TACTGTGTTTGTACGAACAA+TGG | - | chr3_1:53602362-53602381 | Msa0362420:intron | 35.0% | |
| ACTGTGTTTGTACGAACAAT+GGG | - | chr3_1:53602363-53602382 | Msa0362420:intron | 35.0% | |
| ATAATGTATGGGTCGAGTAT+GGG | + | chr3_1:53602507-53602526 | None:intergenic | 35.0% | |
| ! | GGAATGTTCTCTCTTTTCTA+CGG | - | chr3_1:53600375-53600394 | Msa0362420:three_prime_UTR | 35.0% |
| TGTGACTAAGATGTTTCCAA+CGG | + | chr3_1:53600603-53600622 | None:intergenic | 35.0% | |
| GAATATCTTTGTTGAAGGTG+AGG | - | chr3_1:53600661-53600680 | Msa0362420:CDS | 35.0% | |
| TTAAAGCCTTAATCCAAACC+TGG | - | chr3_1:53600967-53600986 | Msa0362420:intron | 35.0% | |
| !! | TGTTGCTGATTCTTTGTTGA+AGG | - | chr3_1:53601218-53601237 | Msa0362420:intron | 35.0% |
| TCTTTGTTGAAGGTGAACTT+TGG | - | chr3_1:53601228-53601247 | Msa0362420:intron | 35.0% | |
| ! | GGTTGAGGGTTTTACATTTT+TGG | - | chr3_1:53601273-53601292 | Msa0362420:intron | 35.0% |
| ! | TGTGCAGGTACAATTTTCAT+TGG | - | chr3_1:53601736-53601755 | Msa0362420:intron | 35.0% |
| ! | CAGGTACAATTTTCATTGGT+GGG | - | chr3_1:53601740-53601759 | Msa0362420:intron | 35.0% |
| ! | AGGTACAATTTTCATTGGTG+GGG | - | chr3_1:53601741-53601760 | Msa0362420:intron | 35.0% |
| AGAGAGCAAATAAACCGTTT+AGG | + | chr3_1:53601961-53601980 | None:intergenic | 35.0% | |
| TTTGAAAGATTGACGATGCA+AGG | - | chr3_1:53601992-53602011 | Msa0362420:intron | 35.0% | |
| TCAGTTCATTTGTCAACAAG+AGG | + | chr3_1:53602026-53602045 | None:intergenic | 35.0% | |
| AGGGATACACAAACAAATCA+TGG | + | chr3_1:53602174-53602193 | None:intergenic | 35.0% | |
| TACTGTGTTTGTACGAACAA+TGG | - | chr3_1:53602362-53602381 | Msa0362420:intron | 35.0% | |
| ACTGTGTTTGTACGAACAAT+GGG | - | chr3_1:53602363-53602382 | Msa0362420:intron | 35.0% | |
| ATAATGTATGGGTCGAGTAT+GGG | + | chr3_1:53602507-53602526 | None:intergenic | 35.0% | |
| AAGGTGGATAAAACGGAACA+GGG | + | chr3_1:53600444-53600463 | None:intergenic | 40.0% | |
| TGGAATGAGACAGATCAAGT+GGG | + | chr3_1:53600506-53600525 | None:intergenic | 40.0% | |
| CGAAAAGATTGAGTAACCGA+CGG | + | chr3_1:53600632-53600651 | None:intergenic | 40.0% | |
| ! | CGGTTACTCAATCTTTTCGT+CGG | - | chr3_1:53600633-53600652 | Msa0362420:CDS | 40.0% |
| AGATTCAGATTCATCACACC+TGG | + | chr3_1:53601078-53601097 | None:intergenic | 40.0% | |
| ! | GCAGGTACAATTTTCATTGG+TGG | - | chr3_1:53601739-53601758 | Msa0362420:intron | 40.0% |
| AAGATTGTTTGTGTGGTGCT+TGG | - | chr3_1:53602098-53602117 | Msa0362420:intron | 40.0% | |
| !! | TCCATGGCATTGTTCTAAGA+GGG | + | chr3_1:53602193-53602212 | None:intergenic | 40.0% |
| ! | ATCCATGGCATTGTTCTAAG+AGG | + | chr3_1:53602194-53602213 | None:intergenic | 40.0% |
| CTTAGAACAATGCCATGGAT+TGG | - | chr3_1:53602194-53602213 | Msa0362420:intron | 40.0% | |
| CACACAAAATCACCAATCCA+TGG | + | chr3_1:53602209-53602228 | None:intergenic | 40.0% | |
| CTGTGTTTGTACGAACAATG+GGG | - | chr3_1:53602364-53602383 | Msa0362420:intron | 40.0% | |
| GATAATGTATGGGTCGAGTA+TGG | + | chr3_1:53602508-53602527 | None:intergenic | 40.0% | |
| AAGGTGGATAAAACGGAACA+GGG | + | chr3_1:53600444-53600463 | None:intergenic | 40.0% | |
| TGGAATGAGACAGATCAAGT+GGG | + | chr3_1:53600506-53600525 | None:intergenic | 40.0% | |
| CGAAAAGATTGAGTAACCGA+CGG | + | chr3_1:53600632-53600651 | None:intergenic | 40.0% | |
| ! | CGGTTACTCAATCTTTTCGT+CGG | - | chr3_1:53600633-53600652 | Msa0362420:CDS | 40.0% |
| AGATTCAGATTCATCACACC+TGG | + | chr3_1:53601078-53601097 | None:intergenic | 40.0% | |
| ! | GCAGGTACAATTTTCATTGG+TGG | - | chr3_1:53601739-53601758 | Msa0362420:intron | 40.0% |
| AAGATTGTTTGTGTGGTGCT+TGG | - | chr3_1:53602098-53602117 | Msa0362420:intron | 40.0% | |
| !! | TCCATGGCATTGTTCTAAGA+GGG | + | chr3_1:53602193-53602212 | None:intergenic | 40.0% |
| ! | ATCCATGGCATTGTTCTAAG+AGG | + | chr3_1:53602194-53602213 | None:intergenic | 40.0% |
| CTTAGAACAATGCCATGGAT+TGG | - | chr3_1:53602194-53602213 | Msa0362420:intron | 40.0% | |
| CACACAAAATCACCAATCCA+TGG | + | chr3_1:53602209-53602228 | None:intergenic | 40.0% | |
| CTGTGTTTGTACGAACAATG+GGG | - | chr3_1:53602364-53602383 | Msa0362420:intron | 40.0% | |
| GATAATGTATGGGTCGAGTA+TGG | + | chr3_1:53602508-53602527 | None:intergenic | 40.0% | |
| AGGTGGATAAAACGGAACAG+GGG | + | chr3_1:53600443-53600462 | None:intergenic | 45.0% | |
| GAAGGTGGATAAAACGGAAC+AGG | + | chr3_1:53600445-53600464 | None:intergenic | 45.0% | |
| ! | TCCGTTTTATCCACCTTCGT+CGG | - | chr3_1:53600447-53600466 | Msa0362420:three_prime_UTR | 45.0% |
| TCCGACGAAGGTGGATAAAA+CGG | + | chr3_1:53600451-53600470 | None:intergenic | 45.0% | |
| TGAAATCTTCTCTCCGACGA+AGG | + | chr3_1:53600463-53600482 | None:intergenic | 45.0% | |
| CTGGAATGAGACAGATCAAG+TGG | + | chr3_1:53600507-53600526 | None:intergenic | 45.0% | |
| ATGACGCAACAGTGATTGTG+AGG | + | chr3_1:53600539-53600558 | None:intergenic | 45.0% | |
| CTTAGTCACAATTCAGCCGT+CGG | - | chr3_1:53600613-53600632 | Msa0362420:CDS | 45.0% | |
| TTCAGATTCATCACACCTGG+CGG | + | chr3_1:53601075-53601094 | None:intergenic | 45.0% | |
| !!! | TTTTCATTGGTGGGGTGTTG+TGG | - | chr3_1:53601749-53601768 | Msa0362420:intron | 45.0% |
| !! | TTTCATTGGTGGGGTGTTGT+GGG | - | chr3_1:53601750-53601769 | Msa0362420:intron | 45.0% |
| TGTCACAGCTGATGACATCT+TGG | - | chr3_1:53601851-53601870 | Msa0362420:intron | 45.0% | |
| GTCACAGCTGATGACATCTT+GGG | - | chr3_1:53601852-53601871 | Msa0362420:intron | 45.0% | |
| TCCCTCTTAGAACAATGCCA+TGG | - | chr3_1:53602189-53602208 | Msa0362420:intron | 45.0% | |
| TGTACGAACAATGGGGATGA+AGG | - | chr3_1:53602371-53602390 | Msa0362420:intron | 45.0% | |
| GTACGAACAATGGGGATGAA+GGG | - | chr3_1:53602372-53602391 | Msa0362420:intron | 45.0% | |
| AGGTGGATAAAACGGAACAG+GGG | + | chr3_1:53600443-53600462 | None:intergenic | 45.0% | |
| GAAGGTGGATAAAACGGAAC+AGG | + | chr3_1:53600445-53600464 | None:intergenic | 45.0% | |
| ! | TCCGTTTTATCCACCTTCGT+CGG | - | chr3_1:53600447-53600466 | Msa0362420:three_prime_UTR | 45.0% |
| TCCGACGAAGGTGGATAAAA+CGG | + | chr3_1:53600451-53600470 | None:intergenic | 45.0% | |
| TGAAATCTTCTCTCCGACGA+AGG | + | chr3_1:53600463-53600482 | None:intergenic | 45.0% | |
| CTGGAATGAGACAGATCAAG+TGG | + | chr3_1:53600507-53600526 | None:intergenic | 45.0% | |
| ATGACGCAACAGTGATTGTG+AGG | + | chr3_1:53600539-53600558 | None:intergenic | 45.0% | |
| CTTAGTCACAATTCAGCCGT+CGG | - | chr3_1:53600613-53600632 | Msa0362420:CDS | 45.0% | |
| TTCAGATTCATCACACCTGG+CGG | + | chr3_1:53601075-53601094 | None:intergenic | 45.0% | |
| !!! | TTTTCATTGGTGGGGTGTTG+TGG | - | chr3_1:53601749-53601768 | Msa0362420:intron | 45.0% |
| !! | TTTCATTGGTGGGGTGTTGT+GGG | - | chr3_1:53601750-53601769 | Msa0362420:intron | 45.0% |
| TGTCACAGCTGATGACATCT+TGG | - | chr3_1:53601851-53601870 | Msa0362420:intron | 45.0% | |
| GTCACAGCTGATGACATCTT+GGG | - | chr3_1:53601852-53601871 | Msa0362420:intron | 45.0% | |
| TCCCTCTTAGAACAATGCCA+TGG | - | chr3_1:53602189-53602208 | Msa0362420:intron | 45.0% | |
| TGTACGAACAATGGGGATGA+AGG | - | chr3_1:53602371-53602390 | Msa0362420:intron | 45.0% | |
| GTACGAACAATGGGGATGAA+GGG | - | chr3_1:53602372-53602391 | Msa0362420:intron | 45.0% | |
| !! | TAATATTAATGAAAAATATA+TGG | + | chr3_1:53602265-53602284 | None:intergenic | 5.0% |
| !! | TAATATTAATGAAAAATATA+TGG | + | chr3_1:53602265-53602284 | None:intergenic | 5.0% |
| AATCTTCTCTCCGACGAAGG+TGG | + | chr3_1:53600460-53600479 | None:intergenic | 50.0% | |
| AAGTGGGACGTCGACGAAAA+TGG | + | chr3_1:53600490-53600509 | None:intergenic | 50.0% | |
| CAACAGTGATTGTGAGGCGA+CGG | + | chr3_1:53600533-53600552 | None:intergenic | 50.0% | |
| GTTTCCAACGGTGAGAGTGA+GGG | + | chr3_1:53600591-53600610 | None:intergenic | 50.0% | |
| TGTTTCCAACGGTGAGAGTG+AGG | + | chr3_1:53600592-53600611 | None:intergenic | 50.0% | |
| ! | GGGTGTTGTGGGTTGCAATT+AGG | - | chr3_1:53601761-53601780 | Msa0362420:intron | 50.0% |
| TGCAATGACAAACCAGCGTG+TGG | - | chr3_1:53602227-53602246 | Msa0362420:intron | 50.0% | |
| ACAAACCAGCGTGTGGACAA+TGG | - | chr3_1:53602234-53602253 | Msa0362420:intron | 50.0% | |
| AATCTTCTCTCCGACGAAGG+TGG | + | chr3_1:53600460-53600479 | None:intergenic | 50.0% | |
| AAGTGGGACGTCGACGAAAA+TGG | + | chr3_1:53600490-53600509 | None:intergenic | 50.0% | |
| CAACAGTGATTGTGAGGCGA+CGG | + | chr3_1:53600533-53600552 | None:intergenic | 50.0% | |
| GTTTCCAACGGTGAGAGTGA+GGG | + | chr3_1:53600591-53600610 | None:intergenic | 50.0% | |
| TGTTTCCAACGGTGAGAGTG+AGG | + | chr3_1:53600592-53600611 | None:intergenic | 50.0% | |
| ! | GGGTGTTGTGGGTTGCAATT+AGG | - | chr3_1:53601761-53601780 | Msa0362420:intron | 50.0% |
| TGCAATGACAAACCAGCGTG+TGG | - | chr3_1:53602227-53602246 | Msa0362420:intron | 50.0% | |
| ACAAACCAGCGTGTGGACAA+TGG | - | chr3_1:53602234-53602253 | Msa0362420:intron | 50.0% | |
| TGGGACGTCGACGAAAATGG+TGG | + | chr3_1:53600487-53600506 | None:intergenic | 55.0% | |
| ACGGTGAGAGTGAGGGATCA+AGG | + | chr3_1:53600584-53600603 | None:intergenic | 55.0% | |
| TGATCCCTCACTCTCACCGT+TGG | - | chr3_1:53600584-53600603 | Msa0362420:three_prime_UTR | 55.0% | |
| ATTCATCACACCTGGCGGAG+GGG | + | chr3_1:53601070-53601089 | None:intergenic | 55.0% | |
| GATTCATCACACCTGGCGGA+GGG | + | chr3_1:53601071-53601090 | None:intergenic | 55.0% | |
| AGATTCATCACACCTGGCGG+AGG | + | chr3_1:53601072-53601091 | None:intergenic | 55.0% | |
| TCGTTACAGCCTACGTGCCT+TGG | - | chr3_1:53601103-53601122 | Msa0362420:intron | 55.0% | |
| CAACGATGAGAGTCACGCGA+CGG | + | chr3_1:53601134-53601153 | None:intergenic | 55.0% | |
| CATTGCCATTGTCCACACGC+TGG | + | chr3_1:53602242-53602261 | None:intergenic | 55.0% | |
| TGGGACGTCGACGAAAATGG+TGG | + | chr3_1:53600487-53600506 | None:intergenic | 55.0% | |
| ACGGTGAGAGTGAGGGATCA+AGG | + | chr3_1:53600584-53600603 | None:intergenic | 55.0% | |
| TGATCCCTCACTCTCACCGT+TGG | - | chr3_1:53600584-53600603 | Msa0362420:three_prime_UTR | 55.0% | |
| ATTCATCACACCTGGCGGAG+GGG | + | chr3_1:53601070-53601089 | None:intergenic | 55.0% | |
| GATTCATCACACCTGGCGGA+GGG | + | chr3_1:53601071-53601090 | None:intergenic | 55.0% | |
| AGATTCATCACACCTGGCGG+AGG | + | chr3_1:53601072-53601091 | None:intergenic | 55.0% | |
| TCGTTACAGCCTACGTGCCT+TGG | - | chr3_1:53601103-53601122 | Msa0362420:intron | 55.0% | |
| CAACGATGAGAGTCACGCGA+CGG | + | chr3_1:53601134-53601153 | None:intergenic | 55.0% | |
| CATTGCCATTGTCCACACGC+TGG | + | chr3_1:53602242-53602261 | None:intergenic | 55.0% | |
| CAGTGATTGTGAGGCGACGG+TGG | + | chr3_1:53600530-53600549 | None:intergenic | 60.0% | |
| TTCATCACACCTGGCGGAGG+GGG | + | chr3_1:53601069-53601088 | None:intergenic | 60.0% | |
| ACGGCGAATCCAAGGCACGT+AGG | + | chr3_1:53601115-53601134 | None:intergenic | 60.0% | |
| CGTCGCGTGACTCTCATCGT+TGG | - | chr3_1:53601132-53601151 | Msa0362420:intron | 60.0% | |
| CAGTGATTGTGAGGCGACGG+TGG | + | chr3_1:53600530-53600549 | None:intergenic | 60.0% | |
| TTCATCACACCTGGCGGAGG+GGG | + | chr3_1:53601069-53601088 | None:intergenic | 60.0% | |
| ACGGCGAATCCAAGGCACGT+AGG | + | chr3_1:53601115-53601134 | None:intergenic | 60.0% | |
| CGTCGCGTGACTCTCATCGT+TGG | - | chr3_1:53601132-53601151 | Msa0362420:intron | 60.0% | |
| GATTGTGAGGCGACGGTGGC+TGG | + | chr3_1:53600526-53600545 | None:intergenic | 65.0% | |
| GTCACGCGACGGCGAATCCA+AGG | + | chr3_1:53601123-53601142 | None:intergenic | 65.0% | |
| GATTGTGAGGCGACGGTGGC+TGG | + | chr3_1:53600526-53600545 | None:intergenic | 65.0% | |
| GTCACGCGACGGCGAATCCA+AGG | + | chr3_1:53601123-53601142 | None:intergenic | 65.0% | |
| !! | AATTCGGTGCCCCCTCCGCC+AGG | - | chr3_1:53601057-53601076 | Msa0362420:intron | 70.0% |
| !! | AATTCGGTGCCCCCTCCGCC+AGG | - | chr3_1:53601057-53601076 | Msa0362420:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 53600373 | 53602631 | 53600373 | ID=Msa0362420;Name=Msa0362420 |
| chr3_1 | mRNA | 53600373 | 53602631 | 53600373 | ID=Msa0362420-mRNA-1;Parent=Msa0362420;Name=Msa0362420-mRNA-1;_AED=0.35;_eAED=0.55;_QI=0|0|0.5|1|0|0|2|234|96 |
| chr3_1 | exon | 53600373 | 53600702 | 53600373 | ID=Msa0362420-mRNA-1:exon:9774;Parent=Msa0362420-mRNA-1 |
| chr3_1 | exon | 53602437 | 53602631 | 53602437 | ID=Msa0362420-mRNA-1:exon:9773;Parent=Msa0362420-mRNA-1 |
| chr3_1 | CDS | 53602437 | 53602631 | 53602437 | ID=Msa0362420-mRNA-1:cds;Parent=Msa0362420-mRNA-1 |
| chr3_1 | CDS | 53600607 | 53600702 | 53600607 | ID=Msa0362420-mRNA-1:cds;Parent=Msa0362420-mRNA-1 |
| chr3_1 | three_prime_UTR | 53600373 | 53600606 | 53600373 | ID=Msa0362420-mRNA-1:three_prime_utr;Parent=Msa0362420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
