Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365500 | XP_013460339.2 | 93.289 | 149 | 8 | 1 | 1 | 147 | 1 | 149 | 9.06e-95 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365500 | sp|Q9FJK3|AGL80_ARATH | 50.993 | 151 | 67 | 4 | 1 | 147 | 1 | 148 | 1.23e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365500 | A0A072UL53 | 89.933 | 149 | 13 | 1 | 1 | 147 | 1 | 149 | 1.22e-89 | 267 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0365500 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0365500 | 0.824750 | 6.816684e-54 | -8.615850e-47 |
| Msa0016570 | Msa0365500 | 0.827463 | 1.542645e-54 | -8.615850e-47 |
| Msa0016580 | Msa0365500 | 0.810104 | 1.360418e-50 | -8.615850e-47 |
| Msa0092630 | Msa0365500 | 0.807910 | 4.012881e-50 | -8.615850e-47 |
| Msa0102070 | Msa0365500 | 0.864602 | 1.080199e-64 | -8.615850e-47 |
| Msa0110270 | Msa0365500 | 0.810215 | 1.287957e-50 | -8.615850e-47 |
| Msa0111510 | Msa0365500 | 0.818876 | 1.558883e-52 | -8.615850e-47 |
| Msa0118060 | Msa0365500 | 0.822886 | 1.862931e-53 | -8.615850e-47 |
| Msa0142220 | Msa0365500 | 0.816860 | 4.448109e-52 | -8.615850e-47 |
| Msa0145750 | Msa0365500 | 0.838283 | 3.152906e-57 | -8.615850e-47 |
| Msa0153910 | Msa0365500 | 0.815197 | 1.045857e-51 | -8.615850e-47 |
| Msa0200000 | Msa0365500 | 0.823868 | 1.098344e-53 | -8.615850e-47 |
| Msa0214380 | Msa0365500 | 0.804355 | 2.247764e-49 | -8.615850e-47 |
| Msa0227480 | Msa0365500 | 0.851009 | 1.172751e-60 | -8.615850e-47 |
| Msa0231000 | Msa0365500 | 0.800642 | 1.309364e-48 | -8.615850e-47 |
| Msa0232850 | Msa0365500 | 0.858621 | 7.264623e-63 | -8.615850e-47 |
| Msa0365500 | Msa0366420 | 0.803094 | 4.106377e-49 | -8.615850e-47 |
| Msa0365500 | Msa0366580 | 0.806184 | 9.306910e-50 | -8.615850e-47 |
| Msa0365500 | Msa0384800 | 0.843762 | 1.147737e-58 | -8.615850e-47 |
| Msa0365500 | Msa0384890 | 0.822159 | 2.749318e-53 | -8.615850e-47 |
| Msa0365500 | Msa0394970 | 0.832757 | 7.876403e-56 | -8.615850e-47 |
| Msa0365500 | Msa0406120 | 0.832326 | 1.007739e-55 | -8.615850e-47 |
| Msa0365500 | Msa0414410 | 0.864536 | 1.132883e-64 | -8.615850e-47 |
| Msa0365500 | Msa0414420 | 0.896415 | 3.770087e-76 | -8.615850e-47 |
| Msa0365500 | Msa0423020 | 0.828701 | 7.768644e-55 | -8.615850e-47 |
| Msa0365500 | Msa0435230 | 0.817458 | 3.263893e-52 | -8.615850e-47 |
| Msa0365500 | Msa0436780 | 0.823854 | 1.106598e-53 | -8.615850e-47 |
| Msa0365500 | Msa0438620 | 0.858405 | 8.424284e-63 | -8.615850e-47 |
| Msa0365500 | Msa0450000 | 0.838576 | 2.649902e-57 | -8.615850e-47 |
| Msa0365500 | Msa0450570 | 0.816439 | 5.526262e-52 | -8.615850e-47 |
| Msa0365500 | Msa0451730 | 0.814529 | 1.470798e-51 | -8.615850e-47 |
| Msa0365500 | Msa0452900 | 0.903307 | 3.971695e-79 | -8.615850e-47 |
| Msa0365500 | Msa0453120 | 0.835649 | 1.483741e-56 | -8.615850e-47 |
| Msa0365500 | Msa0454370 | 0.818786 | 1.634178e-52 | -8.615850e-47 |
| Msa0365500 | Msa0454910 | 0.824098 | 9.701909e-54 | -8.615850e-47 |
| Msa0365500 | Msa0458450 | 0.847022 | 1.504341e-59 | -8.615850e-47 |
| Msa0365500 | Msa0459160 | 0.849836 | 2.504175e-60 | -8.615850e-47 |
| Msa0365500 | Msa0459170 | 0.816002 | 6.920698e-52 | -8.615850e-47 |
| Msa0365500 | Msa0479340 | 0.810897 | 9.170800e-51 | -8.615850e-47 |
| Msa0365500 | Msa0485030 | 0.806334 | 8.651097e-50 | -8.615850e-47 |
| Msa0365500 | Msa0491590 | 0.835847 | 1.322150e-56 | -8.615850e-47 |
| Msa0365500 | Msa0502760 | 0.825215 | 5.292577e-54 | -8.615850e-47 |
| Msa0365500 | Msa0505080 | 0.907312 | 5.809000e-81 | -8.615850e-47 |
| Msa0365500 | Msa0506190 | 0.811015 | 8.649292e-51 | -8.615850e-47 |
| Msa0365500 | Msa0506270 | 0.822594 | 2.179261e-53 | -8.615850e-47 |
| Msa0365500 | Msa0534540 | 0.827185 | 1.799284e-54 | -8.615850e-47 |
| Msa0365500 | Msa0564890 | 0.865340 | 6.340516e-65 | -8.615850e-47 |
| Msa0365500 | Msa0590780 | 0.801548 | 8.549037e-49 | -8.615850e-47 |
| Msa0365500 | Msa0596150 | 0.814174 | 1.761708e-51 | -8.615850e-47 |
| Msa0365500 | Msa0604350 | 0.828276 | 9.834571e-55 | -8.615850e-47 |
| Msa0365500 | Msa0636170 | 0.843967 | 1.011321e-58 | -8.615850e-47 |
| Msa0365500 | Msa0639610 | 0.809464 | 1.867974e-50 | -8.615850e-47 |
| Msa0365500 | Msa0650630 | 0.805586 | 1.242954e-49 | -8.615850e-47 |
| Msa0365500 | Msa0675830 | 0.812439 | 4.238149e-51 | -8.615850e-47 |
| Msa0365500 | Msa0678930 | 0.835972 | 1.229256e-56 | -8.615850e-47 |
| Msa0365500 | Msa0694370 | 0.837899 | 3.959554e-57 | -8.615850e-47 |
| Msa0365500 | Msa0726140 | 0.871345 | 7.336594e-67 | -8.615850e-47 |
| Msa0365500 | Msa0729800 | 0.835740 | 1.407264e-56 | -8.615850e-47 |
| Msa0365500 | Msa0732710 | 0.825223 | 5.271304e-54 | -8.615850e-47 |
| Msa0365500 | Msa0733290 | 0.840123 | 1.051166e-57 | -8.615850e-47 |
| Msa0365500 | Msa0741990 | 0.806480 | 8.058558e-50 | -8.615850e-47 |
| Msa0365500 | Msa0743810 | 0.882814 | 7.595848e-71 | -8.615850e-47 |
| Msa0365500 | Msa0745060 | 0.894147 | 3.241459e-75 | -8.615850e-47 |
| Msa0365500 | Msa0767720 | 0.843520 | 1.332503e-58 | -8.615850e-47 |
| Msa0365500 | Msa0777870 | 0.826080 | 3.300258e-54 | -8.615850e-47 |
| Msa0365500 | Msa0783160 | 0.865281 | 6.617269e-65 | -8.615850e-47 |
| Msa0365500 | Msa0784290 | 0.849498 | 3.110987e-60 | -8.615850e-47 |
| Msa0365500 | Msa0784300 | 0.805984 | 1.025190e-49 | -8.615850e-47 |
| Msa0365500 | Msa0787600 | 0.845783 | 3.273571e-59 | -8.615850e-47 |
| Msa0365500 | Msa0808010 | 0.867940 | 9.448549e-66 | -8.615850e-47 |
| Msa0365500 | Msa0808020 | 0.857780 | 1.292631e-62 | -8.615850e-47 |
| Msa0365500 | Msa0811270 | 0.830530 | 2.788209e-55 | -8.615850e-47 |
| Msa0365500 | Msa0825860 | 0.886033 | 4.861710e-72 | -8.615850e-47 |
| Msa0365500 | Msa0833290 | 0.829918 | 3.934674e-55 | -8.615850e-47 |
| Msa0365500 | Msa0833300 | 0.816750 | 4.707900e-52 | -8.615850e-47 |
| Msa0365500 | Msa0846210 | 0.849928 | 2.359763e-60 | -8.615850e-47 |
| Msa0365500 | Msa0846330 | 0.865115 | 7.462759e-65 | -8.615850e-47 |
| Msa0365500 | Msa0846350 | 0.851019 | 1.165056e-60 | -8.615850e-47 |
| Msa0365500 | Msa0848960 | 0.822357 | 2.473302e-53 | -8.615850e-47 |
| Msa0365500 | Msa0858980 | 0.847401 | 1.183802e-59 | -8.615850e-47 |
| Msa0365500 | Msa0865320 | 0.868252 | 7.498517e-66 | -8.615850e-47 |
| Msa0365500 | Msa0872230 | 0.830436 | 2.939437e-55 | -8.615850e-47 |
| Msa0365500 | Msa0873460 | 0.814182 | 1.755386e-51 | -8.615850e-47 |
| Msa0365500 | Msa0885290 | 0.843319 | 1.507195e-58 | -8.615850e-47 |
| Msa0365500 | Msa0888370 | 0.852675 | 3.950048e-61 | -8.615850e-47 |
| Msa0365500 | Msa0888420 | 0.821062 | 4.930918e-53 | -8.615850e-47 |
| Msa0365500 | Msa0896080 | 0.807972 | 3.892755e-50 | -8.615850e-47 |
| Msa0365500 | Msa0898080 | 0.802523 | 5.388950e-49 | -8.615850e-47 |
| Msa0365500 | Msa0899430 | 0.823408 | 1.407920e-53 | -8.615850e-47 |
| Msa0365500 | Msa0899450 | 0.828339 | 9.497066e-55 | -8.615850e-47 |
| Msa0365500 | Msa0907260 | 0.803831 | 2.889832e-49 | -8.615850e-47 |
| Msa0365500 | Msa0914760 | 0.817717 | 2.852653e-52 | -8.615850e-47 |
| Msa0365500 | Msa0922720 | 0.815834 | 7.546168e-52 | -8.615850e-47 |
| Msa0365500 | Msa0952350 | 0.803490 | 3.401059e-49 | -8.615850e-47 |
| Msa0365500 | Msa0952720 | 0.843260 | 1.563372e-58 | -8.615850e-47 |
| Msa0365500 | Msa0954910 | 0.833015 | 6.798855e-56 | -8.615850e-47 |
| Msa0365500 | Msa0956270 | 0.812646 | 3.817334e-51 | -8.615850e-47 |
| Msa0365500 | Msa0957680 | 0.805221 | 1.482545e-49 | -8.615850e-47 |
| Msa0365500 | Msa0957860 | 0.832240 | 1.058311e-55 | -8.615850e-47 |
| Msa0365500 | Msa0957960 | 0.831380 | 1.724703e-55 | -8.615850e-47 |
| Msa0365500 | Msa0958550 | 0.823209 | 1.566473e-53 | -8.615850e-47 |
| Msa0365500 | Msa0981270 | 0.812770 | 3.586034e-51 | -8.615850e-47 |
| Msa0365500 | Msa0981370 | 0.823816 | 1.129508e-53 | -8.615850e-47 |
| Msa0365500 | Msa0989060 | 0.823958 | 1.046246e-53 | -8.615850e-47 |
| Msa0365500 | Msa0989890 | 0.811294 | 7.523520e-51 | -8.615850e-47 |
| Msa0365500 | Msa0991820 | 0.827380 | 1.615585e-54 | -8.615850e-47 |
| Msa0365500 | Msa1016280 | 0.872450 | 3.151206e-67 | -8.615850e-47 |
| Msa0365500 | Msa1023050 | 0.832419 | 9.553694e-56 | -8.615850e-47 |
| Msa0365500 | Msa1024240 | 0.816746 | 4.716557e-52 | -8.615850e-47 |
| Msa0365500 | Msa1025360 | 0.897850 | 9.418582e-77 | -8.615850e-47 |
| Msa0365500 | Msa1025370 | 0.886492 | 3.262579e-72 | -8.615850e-47 |
| Msa0365500 | Msa1028230 | 0.802312 | 5.954786e-49 | -8.615850e-47 |
| Msa0365500 | Msa1030060 | 0.802049 | 6.745422e-49 | -8.615850e-47 |
| Msa0365500 | Msa1044830 | 0.888826 | 4.182375e-73 | -8.615850e-47 |
| Msa0365500 | Msa1044840 | 0.898760 | 3.869480e-77 | -8.615850e-47 |
| Msa0365500 | Msa1060840 | 0.842131 | 3.117466e-58 | -8.615850e-47 |
| Msa0365500 | Msa1091900 | 0.802644 | 5.087835e-49 | -8.615850e-47 |
| Msa0365500 | Msa1092990 | 0.890443 | 9.807287e-74 | -8.615850e-47 |
| Msa0365500 | Msa1100980 | 0.893045 | 9.054579e-75 | -8.615850e-47 |
| Msa0365500 | Msa1109440 | 0.862900 | 3.651215e-64 | -8.615850e-47 |
| Msa0365500 | Msa1112300 | 0.818855 | 1.576794e-52 | -8.615850e-47 |
| Msa0365500 | Msa1121200 | 0.846133 | 2.630645e-59 | -8.615850e-47 |
| Msa0365500 | Msa1121490 | 0.802296 | 5.999509e-49 | -8.615850e-47 |
| Msa0365500 | Msa1135220 | 0.801592 | 8.374457e-49 | -8.615850e-47 |
| Msa0365500 | Msa1135740 | 0.873057 | 1.974761e-67 | -8.615850e-47 |
| Msa0365500 | Msa1136090 | 0.845684 | 3.482635e-59 | -8.615850e-47 |
| Msa0365500 | Msa1146110 | 0.864258 | 1.383637e-64 | -8.615850e-47 |
| Msa0365500 | Msa1149360 | 0.802249 | 6.136268e-49 | -8.615850e-47 |
| Msa0365500 | Msa1150370 | 0.838804 | 2.312993e-57 | -8.615850e-47 |
| Msa0365500 | Msa1173920 | 0.843074 | 1.751806e-58 | -8.615850e-47 |
| Msa0365500 | Msa1182090 | 0.815929 | 7.186864e-52 | -8.615850e-47 |
| Msa0365500 | Msa1184420 | 0.831199 | 1.911160e-55 | -8.615850e-47 |
| Msa0365500 | Msa1187940 | 0.894952 | 1.519093e-75 | -8.615850e-47 |
| Msa0365500 | Msa1187950 | 0.844930 | 5.571924e-59 | -8.615850e-47 |
| Msa0365500 | Msa1192640 | 0.896219 | 4.551110e-76 | -8.615850e-47 |
| Msa0365500 | Msa1230430 | 0.804345 | 2.258393e-49 | -8.615850e-47 |
| Msa0365500 | Msa1246880 | 0.827656 | 1.387136e-54 | -8.615850e-47 |
| Msa0365500 | Msa1248310 | 0.803159 | 3.981875e-49 | -8.615850e-47 |
| Msa0365500 | Msa1260100 | 0.833460 | 5.265195e-56 | -8.615850e-47 |
| Msa0365500 | Msa1269670 | 0.892419 | 1.616115e-74 | -8.615850e-47 |
| Msa0365500 | Msa1270230 | 0.888358 | 6.336641e-73 | -8.615850e-47 |
| Msa0365500 | Msa1270240 | 0.884605 | 1.662691e-71 | -8.615850e-47 |
| Msa0365500 | Msa1270270 | 0.870912 | 1.019207e-66 | -8.615850e-47 |
| Msa0365500 | Msa1273230 | 0.831250 | 1.857184e-55 | -8.615850e-47 |
| Msa0365500 | Msa1283330 | 0.876026 | 1.936613e-68 | -8.615850e-47 |
| Msa0365500 | Msa1285930 | 0.905066 | 6.353999e-80 | -8.615850e-47 |
| Msa0365500 | Msa1287800 | 0.885304 | 9.129520e-72 | -8.615850e-47 |
| Msa0365500 | Msa1287810 | 0.894331 | 2.725842e-75 | -8.615850e-47 |
| Msa0365500 | Msa1287820 | 0.802168 | 6.375561e-49 | -8.615850e-47 |
| Msa0365500 | Msa1287830 | 0.825416 | 4.743277e-54 | -8.615850e-47 |
| Msa0365500 | Msa1289430 | 0.844454 | 7.483480e-59 | -8.615850e-47 |
| Msa0365500 | Msa1297210 | 0.812424 | 4.269991e-51 | -8.615850e-47 |
| Msa0365500 | Msa1305480 | 0.808616 | 2.837750e-50 | -8.615850e-47 |
| Msa0365500 | Msa1307890 | 0.848610 | 5.491294e-60 | -8.615850e-47 |
| Msa0365500 | Msa1313980 | 0.809095 | 2.240956e-50 | -8.615850e-47 |
| Msa0365500 | Msa1314280 | 0.828189 | 1.032529e-54 | -8.615850e-47 |
| Msa0365500 | Msa1320300 | 0.834186 | 3.466369e-56 | -8.615850e-47 |
| Msa0365500 | Msa1340590 | 0.844953 | 5.491845e-59 | -8.615850e-47 |
| Msa0365500 | Msa1342200 | 0.857459 | 1.609528e-62 | -8.615850e-47 |
| Msa0365500 | Msa1344520 | 0.807308 | 5.387100e-50 | -8.615850e-47 |
| Msa0365500 | Msa1369430 | 0.823474 | 1.358277e-53 | -8.615850e-47 |
| Msa0365500 | Msa1370210 | 0.811277 | 7.585881e-51 | -8.615850e-47 |
| Msa0365500 | Msa1382690 | 0.806578 | 7.685414e-50 | -8.615850e-47 |
| Msa0365500 | Msa1386330 | 0.822422 | 2.389441e-53 | -8.615850e-47 |
| Msa0365500 | Msa1397150 | 0.807264 | 5.503665e-50 | -8.615850e-47 |
| Msa0365500 | Msa1397580 | 0.857341 | 1.743409e-62 | -8.615850e-47 |
| Msa0365500 | Msa1404000 | 0.884489 | 1.835639e-71 | -8.615850e-47 |
| Msa0365500 | Msa1408780 | 0.805460 | 1.320833e-49 | -8.615850e-47 |
| Msa0365500 | Msa1415310 | 0.862201 | 5.990816e-64 | -8.615850e-47 |
| Msa0365500 | Msa1422180 | 0.842923 | 1.921730e-58 | -8.615850e-47 |
| Msa0365500 | Msa1433120 | 0.850428 | 1.709484e-60 | -8.615850e-47 |
| Msa0365500 | Msa1451570 | 0.815740 | 7.919804e-52 | -8.615850e-47 |
| Msa0251320 | Msa0365500 | 0.808765 | 2.637406e-50 | -8.615850e-47 |
| Msa0267000 | Msa0365500 | 0.885748 | 6.220162e-72 | -8.615850e-47 |
| Msa0267010 | Msa0365500 | 0.888204 | 7.262760e-73 | -8.615850e-47 |
| Msa0270520 | Msa0365500 | 0.831656 | 1.475377e-55 | -8.615850e-47 |
| Msa0304170 | Msa0365500 | 0.811220 | 7.805848e-51 | -8.615850e-47 |
| Msa0306460 | Msa0365500 | 0.804355 | 2.247773e-49 | -8.615850e-47 |
| Msa0313760 | Msa0365500 | 0.811256 | 7.668276e-51 | -8.615850e-47 |
| Msa0342240 | Msa0365500 | 0.857957 | 1.145129e-62 | -8.615850e-47 |
| Msa0360510 | Msa0365500 | 0.869232 | 3.611603e-66 | -8.615850e-47 |
| Msa0362420 | Msa0365500 | 0.844248 | 8.505667e-59 | -8.615850e-47 |
| Msa0363300 | Msa0365500 | 0.802215 | 6.235414e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365500 | MtrunA17_Chr3g0107461 | 79.195 | 149 | 29 | 1 | 1 | 147 | 1 | 149 | 2.46e-81 | 236 |
| Msa0365500 | MtrunA17_Chr3g0105791 | 94.215 | 121 | 5 | 1 | 29 | 147 | 1 | 121 | 1.89e-79 | 231 |
| Msa0365500 | MtrunA17_Chr4g0031421 | 90.083 | 121 | 10 | 1 | 29 | 147 | 1 | 121 | 4.12e-74 | 218 |
| Msa0365500 | MtrunA17_Chr3g0107381 | 55.034 | 149 | 64 | 2 | 1 | 147 | 1 | 148 | 3.16e-51 | 162 |
| Msa0365500 | MtrunA17_Chr3g0110131 | 52.349 | 149 | 68 | 2 | 1 | 147 | 1 | 148 | 5.61e-40 | 134 |
| Msa0365500 | MtrunA17_Chr2g0283941 | 46.309 | 149 | 78 | 1 | 1 | 147 | 1 | 149 | 2.67e-39 | 132 |
| Msa0365500 | MtrunA17_Chr5g0432691 | 42.763 | 152 | 78 | 3 | 1 | 147 | 1 | 148 | 2.50e-38 | 127 |
| Msa0365500 | MtrunA17_Chr8g0351751 | 44.371 | 151 | 80 | 2 | 1 | 147 | 1 | 151 | 3.42e-36 | 124 |
| Msa0365500 | MtrunA17_Chr4g0014321 | 40.940 | 149 | 86 | 1 | 1 | 147 | 1 | 149 | 1.05e-35 | 123 |
| Msa0365500 | MtrunA17_Chr2g0296861 | 46.980 | 149 | 76 | 2 | 1 | 147 | 1 | 148 | 7.38e-35 | 119 |
| Msa0365500 | MtrunA17_Chr4g0014031 | 44.966 | 149 | 80 | 1 | 1 | 147 | 1 | 149 | 2.10e-33 | 117 |
| Msa0365500 | MtrunA17_Chr5g0420351 | 43.624 | 149 | 80 | 3 | 1 | 147 | 1 | 147 | 3.68e-33 | 114 |
| Msa0365500 | MtrunA17_Chr1g0188681 | 43.919 | 148 | 81 | 2 | 1 | 147 | 1 | 147 | 1.75e-32 | 112 |
| Msa0365500 | MtrunA17_Chr3g0106501 | 47.934 | 121 | 61 | 1 | 29 | 147 | 1 | 121 | 1.89e-32 | 112 |
| Msa0365500 | MtrunA17_Chr4g0013041 | 38.926 | 149 | 87 | 2 | 1 | 147 | 1 | 147 | 4.50e-30 | 108 |
| Msa0365500 | MtrunA17_Chr4g0014131 | 43.624 | 149 | 82 | 1 | 1 | 147 | 1 | 149 | 4.81e-30 | 108 |
| Msa0365500 | MtrunA17_Chr2g0296831 | 47.863 | 117 | 59 | 1 | 1 | 115 | 1 | 117 | 1.38e-29 | 104 |
| Msa0365500 | MtrunA17_Chr3g0107331 | 40.136 | 147 | 85 | 2 | 3 | 147 | 2 | 147 | 2.09e-29 | 105 |
| Msa0365500 | MtrunA17_Chr4g0014121 | 42.282 | 149 | 84 | 1 | 1 | 147 | 29 | 177 | 3.16e-29 | 105 |
| Msa0365500 | MtrunA17_Chr1g0197461 | 39.041 | 146 | 87 | 2 | 3 | 147 | 2 | 146 | 9.63e-28 | 100 |
| Msa0365500 | MtrunA17_Chr1g0188661 | 41.892 | 148 | 84 | 2 | 1 | 147 | 1 | 147 | 5.70e-27 | 98.6 |
| Msa0365500 | MtrunA17_Chr1g0193311 | 41.892 | 148 | 84 | 2 | 1 | 147 | 1 | 147 | 5.93e-27 | 98.6 |
| Msa0365500 | MtrunA17_Chr4g0012761 | 41.216 | 148 | 85 | 2 | 1 | 147 | 1 | 147 | 7.80e-27 | 98.6 |
| Msa0365500 | MtrunA17_Chr1g0188651 | 41.892 | 148 | 82 | 2 | 1 | 147 | 1 | 145 | 8.99e-27 | 98.2 |
| Msa0365500 | MtrunA17_Chr7g0218151 | 41.216 | 148 | 85 | 2 | 1 | 147 | 1 | 147 | 2.09e-26 | 97.4 |
| Msa0365500 | MtrunA17_Chr3g0107361 | 38.776 | 147 | 87 | 2 | 3 | 147 | 2 | 147 | 4.25e-26 | 96.7 |
| Msa0365500 | MtrunA17_Chr3g0106421 | 42.975 | 121 | 67 | 1 | 29 | 147 | 1 | 121 | 6.41e-26 | 97.4 |
| Msa0365500 | MtrunA17_Chr3g0107351 | 37.415 | 147 | 89 | 2 | 3 | 147 | 2 | 147 | 2.43e-24 | 92.0 |
| Msa0365500 | MtrunA17_Chr3g0107341 | 37.415 | 147 | 89 | 2 | 3 | 147 | 2 | 147 | 2.75e-23 | 89.4 |
| Msa0365500 | MtrunA17_Chr1g0197321 | 34.899 | 149 | 94 | 2 | 1 | 147 | 1 | 148 | 1.09e-22 | 87.8 |
| Msa0365500 | MtrunA17_Chr1g0197261 | 34.194 | 155 | 86 | 5 | 1 | 147 | 1 | 147 | 2.23e-22 | 87.0 |
| Msa0365500 | MtrunA17_Chr4g0008701 | 30.573 | 157 | 91 | 5 | 1 | 146 | 1 | 150 | 1.56e-14 | 69.3 |
| Msa0365500 | MtrunA17_Chr7g0267601 | 30.345 | 145 | 81 | 5 | 1 | 137 | 1 | 133 | 4.70e-14 | 68.2 |
| Msa0365500 | MtrunA17_Chr6g0457851 | 27.632 | 152 | 95 | 4 | 1 | 145 | 11 | 154 | 7.71e-13 | 64.3 |
| Msa0365500 | MtrunA17_Chr1g0212151 | 30.252 | 119 | 70 | 3 | 1 | 109 | 1 | 116 | 1.07e-11 | 61.2 |
| Msa0365500 | MtrunA17_Chr3g0128721 | 31.313 | 99 | 66 | 1 | 5 | 101 | 8 | 106 | 1.21e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365500 | AT5G48670.1 | 50.993 | 151 | 67 | 4 | 1 | 147 | 1 | 148 | 1.25e-35 | 125 |
| Msa0365500 | AT3G05860.2 | 42.384 | 151 | 80 | 3 | 1 | 147 | 1 | 148 | 7.30e-30 | 107 |
| Msa0365500 | AT3G05860.3 | 42.384 | 151 | 80 | 3 | 1 | 147 | 1 | 148 | 1.65e-29 | 108 |
| Msa0365500 | AT3G05860.1 | 42.384 | 151 | 80 | 3 | 1 | 147 | 1 | 148 | 2.45e-29 | 107 |
| Msa0365500 | AT1G65330.1 | 41.379 | 145 | 82 | 2 | 3 | 145 | 2 | 145 | 8.79e-29 | 107 |
| Msa0365500 | AT5G27810.1 | 51.685 | 89 | 41 | 1 | 29 | 115 | 1 | 89 | 2.77e-26 | 96.3 |
| Msa0365500 | AT1G65300.1 | 40.000 | 145 | 84 | 2 | 3 | 145 | 2 | 145 | 5.57e-26 | 99.4 |
| Msa0365500 | AT5G26650.1 | 45.872 | 109 | 57 | 1 | 5 | 111 | 3 | 111 | 6.08e-25 | 98.2 |
| Msa0365500 | AT1G31630.1 | 37.162 | 148 | 87 | 4 | 3 | 147 | 2 | 146 | 2.01e-24 | 96.7 |
| Msa0365500 | AT5G27960.1 | 44.954 | 109 | 58 | 1 | 5 | 111 | 3 | 111 | 3.96e-24 | 95.5 |
| Msa0365500 | AT1G31640.1 | 39.216 | 153 | 77 | 5 | 3 | 147 | 2 | 146 | 8.89e-24 | 95.9 |
| Msa0365500 | AT1G22590.2 | 39.823 | 113 | 66 | 1 | 1 | 111 | 1 | 113 | 2.45e-23 | 89.7 |
| Msa0365500 | AT5G26630.1 | 37.584 | 149 | 90 | 2 | 1 | 147 | 1 | 148 | 2.82e-21 | 85.9 |
| Msa0365500 | AT2G28700.1 | 38.835 | 103 | 61 | 1 | 1 | 101 | 1 | 103 | 4.39e-17 | 76.6 |
| Msa0365500 | AT5G06500.1 | 35.135 | 111 | 66 | 2 | 1 | 109 | 1 | 107 | 9.01e-17 | 74.7 |
| Msa0365500 | AT5G26580.1 | 39.000 | 100 | 49 | 1 | 1 | 100 | 1 | 88 | 4.26e-14 | 68.2 |
| Msa0365500 | AT2G40210.1 | 35.644 | 101 | 63 | 1 | 1 | 99 | 1 | 101 | 7.53e-13 | 64.7 |
Find 29 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTCATTTCCATCTTTC+TGG | 0.077675 | 3_1:+59620806 | None:intergenic |
| ATTCAAACCATAGAATTTAA+TGG | 0.173791 | 3_1:-59620768 | Msa0365500:CDS |
| CGAATTTCCATTAAATTCTA+TGG | 0.218755 | 3_1:+59620761 | None:intergenic |
| GAGGTTTGGCCATCAGATTC+AGG | 0.258145 | 3_1:-59620963 | Msa0365500:CDS |
| CGCTACCATGACTAGAAATA+AGG | 0.322931 | 3_1:-59621362 | None:intergenic |
| TCTTCTTGAGGCAAAACATT+AGG | 0.355934 | 3_1:-59620866 | Msa0365500:CDS |
| AATATAATGATCAATGATAT+TGG | 0.368342 | 3_1:+59620788 | None:intergenic |
| GGGTCAGAAGTGTGATATCT+AGG | 0.436600 | 3_1:-59620941 | Msa0365500:intron |
| TCTAGGTTTAGGAGTTTGCC+TGG | 0.445921 | 3_1:-59620924 | Msa0365500:intron |
| ACAACCCTCGAGTAGAGGTT+TGG | 0.487846 | 3_1:-59620977 | Msa0365500:CDS |
| ACGAGCAGTTGAAGAAGCAA+AGG | 0.502207 | 3_1:-59620836 | Msa0365500:CDS |
| AGGTTTGGCCATCAGATTCA+GGG | 0.511068 | 3_1:-59620962 | Msa0365500:CDS |
| AAGGGAGGAAACCAGAAAGA+TGG | 0.513695 | 3_1:-59620817 | Msa0365500:CDS |
| GGAGGATAACATACAGAAAG+AGG | 0.518632 | 3_1:-59621306 | Msa0365500:CDS |
| TTTCACCTTATTTCTAGTCA+TGG | 0.525434 | 3_1:+59621357 | None:intergenic |
| CGAGCAGTTGAAGAAGCAAA+GGG | 0.550309 | 3_1:-59620835 | Msa0365500:CDS |
| ACATGCTTCGACTCCACATA+GGG | 0.581479 | 3_1:+59621019 | None:intergenic |
| TATTGATGAGAATTTGAAGG+AGG | 0.592173 | 3_1:-59620703 | None:intergenic |
| CACATGCTTCGACTCCACAT+AGG | 0.603214 | 3_1:+59621018 | None:intergenic |
| AATGAAATTAGCACCCTATG+TGG | 0.604835 | 3_1:-59621032 | Msa0365500:CDS |
| GCAAAACAACCCTCGAGTAG+AGG | 0.609086 | 3_1:-59620982 | Msa0365500:CDS |
| ACATAACATGTGACTCGAAG+AGG | 0.616371 | 3_1:-59621327 | Msa0365500:CDS |
| CTTCTGACCCCTGAATCTGA+TGG | 0.624024 | 3_1:+59620954 | None:intergenic |
| GATGGCCAAACCTCTACTCG+AGG | 0.634480 | 3_1:+59620972 | None:intergenic |
| GGTTTGGCCATCAGATTCAG+GGG | 0.657992 | 3_1:-59620961 | Msa0365500:CDS |
| ATGGCCAAACCTCTACTCGA+GGG | 0.659257 | 3_1:+59620973 | None:intergenic |
| TAACATGTGACTCGAAGAGG+AGG | 0.659370 | 3_1:-59621324 | Msa0365500:CDS |
| GCAGTTGAAGAAGCAAAGGG+AGG | 0.693727 | 3_1:-59620832 | Msa0365500:CDS |
| TGGATCAGGAGGTCTTCTTG+AGG | 0.700337 | 3_1:-59620878 | Msa0365500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATATAGAATTTTTTTAAT+AGG | - | chr3_1:59620988-59621007 | Msa0365500:CDS | 10.0% |
| !! | AATATAATGATCAATGATAT+TGG | + | chr3_1:59621274-59621293 | None:intergenic | 15.0% |
| !! | AATAAACAATATACAATCGA+TGG | + | chr3_1:59620969-59620988 | None:intergenic | 20.0% |
| !! | ATTCAAACCATAGAATTTAA+TGG | - | chr3_1:59621291-59621310 | Msa0365500:intron | 20.0% |
| !!! | TTTTATTGATGAGAATTTGA+AGG | - | chr3_1:59621353-59621372 | Msa0365500:CDS | 20.0% |
| !! | TACATGCTTTGTTGAAATTA+TGG | + | chr3_1:59620802-59620821 | None:intergenic | 25.0% |
| !!! | TGTGATATTTCTAGGAAAAA+AGG | + | chr3_1:59620854-59620873 | None:intergenic | 25.0% |
| ! | TGTTAACATGTGATATTTCT+AGG | + | chr3_1:59620862-59620881 | None:intergenic | 25.0% |
| ! | ACATGAACAAAGTAAAAAGA+TGG | - | chr3_1:59621158-59621177 | Msa0365500:intron | 25.0% |
| ! | CGAATTTCCATTAAATTCTA+TGG | + | chr3_1:59621301-59621320 | None:intergenic | 25.0% |
| ACATACAGAAAGAGGAAAAA+TGG | - | chr3_1:59620761-59620780 | Msa0365500:CDS | 30.0% | |
| ! | TTTTTACTTTGTTCATGTCC+AGG | + | chr3_1:59621156-59621175 | None:intergenic | 30.0% |
| TGAACAAAGTAAAAAGATGG+TGG | - | chr3_1:59621161-59621180 | Msa0365500:intron | 30.0% | |
| ! | GCTTTGTTGAAATTATGGAG+AGG | + | chr3_1:59620797-59620816 | None:intergenic | 35.0% |
| AATGAAATTAGCACCCTATG+TGG | - | chr3_1:59621027-59621046 | Msa0365500:CDS | 35.0% | |
| GAAGTGTGATATCTAGGTTT+AGG | - | chr3_1:59621124-59621143 | Msa0365500:intron | 35.0% | |
| !! | AAGTAAAAAGATGGTGGATC+AGG | - | chr3_1:59621167-59621186 | Msa0365500:intron | 35.0% |
| TCTTCTTGAGGCAAAACATT+AGG | - | chr3_1:59621193-59621212 | Msa0365500:intron | 35.0% | |
| ATTGGTCATTTCCATCTTTC+TGG | + | chr3_1:59621256-59621275 | None:intergenic | 35.0% | |
| ACATAACATGTGACTCGAAG+AGG | - | chr3_1:59620732-59620751 | Msa0365500:CDS | 40.0% | |
| GGAGGATAACATACAGAAAG+AGG | - | chr3_1:59620753-59620772 | Msa0365500:CDS | 40.0% | |
| !! | TAAAAAGATGGTGGATCAGG+AGG | - | chr3_1:59621170-59621189 | Msa0365500:intron | 40.0% |
| TAACATGTGACTCGAAGAGG+AGG | - | chr3_1:59620735-59620754 | Msa0365500:CDS | 45.0% | |
| ACATGCTTCGACTCCACATA+GGG | + | chr3_1:59621043-59621062 | None:intergenic | 45.0% | |
| AGGTTTGGCCATCAGATTCA+GGG | - | chr3_1:59621097-59621116 | Msa0365500:intron | 45.0% | |
| ! | GGGTCAGAAGTGTGATATCT+AGG | - | chr3_1:59621118-59621137 | Msa0365500:intron | 45.0% |
| TCTAGGTTTAGGAGTTTGCC+TGG | - | chr3_1:59621135-59621154 | Msa0365500:intron | 45.0% | |
| ACGAGCAGTTGAAGAAGCAA+AGG | - | chr3_1:59621223-59621242 | Msa0365500:intron | 45.0% | |
| CGAGCAGTTGAAGAAGCAAA+GGG | - | chr3_1:59621224-59621243 | Msa0365500:intron | 45.0% | |
| AAGGGAGGAAACCAGAAAGA+TGG | - | chr3_1:59621242-59621261 | Msa0365500:intron | 45.0% | |
| CACATGCTTCGACTCCACAT+AGG | + | chr3_1:59621044-59621063 | None:intergenic | 50.0% | |
| GCAAAACAACCCTCGAGTAG+AGG | - | chr3_1:59621077-59621096 | Msa0365500:intron | 50.0% | |
| ACAACCCTCGAGTAGAGGTT+TGG | - | chr3_1:59621082-59621101 | Msa0365500:intron | 50.0% | |
| ATGGCCAAACCTCTACTCGA+GGG | + | chr3_1:59621089-59621108 | None:intergenic | 50.0% | |
| GAGGTTTGGCCATCAGATTC+AGG | - | chr3_1:59621096-59621115 | Msa0365500:intron | 50.0% | |
| GGTTTGGCCATCAGATTCAG+GGG | - | chr3_1:59621098-59621117 | Msa0365500:intron | 50.0% | |
| CTTCTGACCCCTGAATCTGA+TGG | + | chr3_1:59621108-59621127 | None:intergenic | 50.0% | |
| TGGATCAGGAGGTCTTCTTG+AGG | - | chr3_1:59621181-59621200 | Msa0365500:intron | 50.0% | |
| GCAGTTGAAGAAGCAAAGGG+AGG | - | chr3_1:59621227-59621246 | Msa0365500:intron | 50.0% | |
| GATGGCCAAACCTCTACTCG+AGG | + | chr3_1:59621090-59621109 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 59620704 | 59621377 | 59620704 | ID=Msa0365500;Name=Msa0365500 |
| chr3_1 | mRNA | 59620704 | 59621377 | 59620704 | ID=Msa0365500-mRNA-1;Parent=Msa0365500;Name=Msa0365500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0|0|3|0|147 |
| chr3_1 | exon | 59621299 | 59621377 | 59621299 | ID=Msa0365500-mRNA-1:exon:11406;Parent=Msa0365500-mRNA-1 |
| chr3_1 | exon | 59620942 | 59621071 | 59620942 | ID=Msa0365500-mRNA-1:exon:11405;Parent=Msa0365500-mRNA-1 |
| chr3_1 | exon | 59620704 | 59620935 | 59620704 | ID=Msa0365500-mRNA-1:exon:11404;Parent=Msa0365500-mRNA-1 |
| chr3_1 | CDS | 59621299 | 59621377 | 59621299 | ID=Msa0365500-mRNA-1:cds;Parent=Msa0365500-mRNA-1 |
| chr3_1 | CDS | 59620942 | 59621071 | 59620942 | ID=Msa0365500-mRNA-1:cds;Parent=Msa0365500-mRNA-1 |
| chr3_1 | CDS | 59620704 | 59620935 | 59620704 | ID=Msa0365500-mRNA-1:cds;Parent=Msa0365500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
