AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041600 MtrunA17_Chr7g0268561 92.342 222 3 1 1 208 1 222 2.78e-141 393
Msa1041600 MtrunA17_Chr1g0196141 61.421 197 52 5 1 180 1 190 9.45e-55 173
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041600 AT4G03120.1 52.597 154 45 4 1 140 1 140 5.20e-30 110

Find 98 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTCCTGGAAGTGTTCC+AGG 0.216520 7_1:-79159728 Msa1041600:CDS
TTTAATTGATCAAAGGATTA+AGG 0.233406 7_1:-79159852 Msa1041600:CDS
CCTGGAAGTGTTCCAGGCTT+TGG 0.280632 7_1:-79159722 Msa1041600:CDS
CCTCCACCGCCGATGGTTCC+TGG 0.305205 7_1:-79159194 Msa1041600:CDS
CCACCAAGGTTGCCAATTCC+TGG 0.314338 7_1:-79159740 Msa1041600:CDS
CCAAAGCCTGGAACACTTCC+AGG 0.317815 7_1:+79159722 None:intergenic
TGAAAATAATCTATCTATCT+TGG 0.330762 7_1:+79161207 None:intergenic
TCCTTTGATCAATTAAACTT+TGG 0.339733 7_1:+79159858 None:intergenic
CCTTTGATCAATTAAACTTT+GGG 0.343098 7_1:+79159859 None:intergenic
GGAGGTAGTGTCGGCGGCCT+AGG 0.345269 7_1:+79159212 None:intergenic
TTTGTTGCTCTTCAAATTGC+AGG 0.353398 7_1:+79159882 None:intergenic
GCTGGTGCTGCAGTGTTTCC+AGG 0.361140 7_1:+79159176 None:intergenic
CTTTCATAGCCTCCGGTTGA+TGG 0.365671 7_1:+79159050 None:intergenic
GTAGTGTCGGCGGCCTAGGA+AGG 0.369695 7_1:+79159216 None:intergenic
CCTGGAACACTTCCAGGAAT+TGG 0.381410 7_1:+79159728 None:intergenic
TGGTATCTACCTGGTGCAAT+AGG 0.410893 7_1:+79159647 None:intergenic
GGTGGCAAGATGGGCATAGA+AGG 0.429555 7_1:+79159761 None:intergenic
GGTTGACGATGCTGATGAAT+TGG 0.429983 7_1:+79159109 None:intergenic
CTTGCTTGCTATGGTGTAGT+GGG 0.433287 7_1:+79161150 None:intergenic
AACCTTGGTGGTGGCAAGAT+GGG 0.436638 7_1:+79159752 None:intergenic
CAACCTTGGTGGTGGCAAGA+TGG 0.441119 7_1:+79159751 None:intergenic
GTTTGTTTGACCAGGTACTA+AGG 0.450520 7_1:+79159241 None:intergenic
CCTGGCCTAGGCATCATCAT+AGG 0.467436 7_1:+79159671 None:intergenic
CCAGGTTAGTTATTTCCCTC+AGG 0.467720 7_1:+79159005 None:intergenic
AACACACAACCACCATCAAC+CGG 0.468559 7_1:-79159062 Msa1041600:CDS
CCTGGTGCTCCCTTAGTACC+TGG 0.473641 7_1:-79159251 Msa1041600:CDS
CCAGGAATTGGCAACCTTGG+TGG 0.474102 7_1:+79159740 None:intergenic
GGAAGTGTTCCAGGCTTTGG+TGG 0.480386 7_1:-79159719 Msa1041600:CDS
CCCAAAGTTTAATTGATCAA+AGG 0.485071 7_1:-79159859 Msa1041600:CDS
CCAGGAACCATCGGCGGTGG+AGG 0.485573 7_1:+79159194 None:intergenic
TCCCTCAGGTGGTTGAGTGT+TGG 0.485768 7_1:+79159019 None:intergenic
GGTAAAGTTGGTGGCATGCC+AGG 0.487428 7_1:+79159278 None:intergenic
ATTGTAACTTTCATAGCCTC+CGG 0.489635 7_1:+79159043 None:intergenic
ATTGTAACTTTCATAGCCTC+CGG 0.489635 7_1:+79159088 None:intergenic
CAATTCAAACCGCGATGCCT+CGG 0.491306 7_1:-79161039 Msa1041600:intron
AATTCATCAGCATCGTCAAC+CGG 0.491553 7_1:-79159107 Msa1041600:CDS
AGAAGGCCTTTGAGCCATCA+TGG 0.494280 7_1:+79159778 None:intergenic
GTCAAACAAACACCCTTCCT+AGG 0.498113 7_1:-79159229 Msa1041600:CDS
GCACCAGGTGGAGGTAAAGT+TGG 0.500332 7_1:+79159266 None:intergenic
ATCATCATAGGTCTCATCCC+TGG 0.503523 7_1:+79159683 None:intergenic
CATCGCGGTTTGAATTGTAA+TGG 0.505761 7_1:+79161045 None:intergenic
AGTTGTTGTCCACCAAAGCC+TGG 0.506526 7_1:+79159710 None:intergenic
GGAAGGGTGTTTGTTTGACC+AGG 0.514254 7_1:+79159233 None:intergenic
CTTCCAGGAATTGGCAACCT+TGG 0.516837 7_1:+79159737 None:intergenic
CAAAGGATTAAGGAACATCT+CGG 0.523084 7_1:-79159842 Msa1041600:CDS
ACGCTATTACTTGCTTGCTA+TGG 0.525630 7_1:+79161141 None:intergenic
ACTTGCTTGCTATGGTGTAG+TGG 0.525797 7_1:+79161149 None:intergenic
GGTGGACAACAACTATTCCC+AGG 0.527961 7_1:-79159701 Msa1041600:CDS
TTTCCAGGAACCATCGGCGG+TGG 0.530281 7_1:+79159191 None:intergenic
GCTGCAGCGTTTCAGCAAGT+TGG 0.533341 7_1:-79159815 Msa1041600:CDS
CCCTAAACTTACAGAATCGT+GGG 0.543253 7_1:+79160899 None:intergenic
TTTGTTTGACCAGGTACTAA+GGG 0.547282 7_1:+79159242 None:intergenic
GGAATTGGCAACCTTGGTGG+TGG 0.547520 7_1:+79159743 None:intergenic
CCAGGTACTAAGGGAGCACC+AGG 0.547558 7_1:+79159251 None:intergenic
CCACCAACTTTACCTCCACC+TGG 0.547840 7_1:-79159269 Msa1041600:CDS
GGTTAGTTATTTCCCTCAGG+TGG 0.548329 7_1:+79159008 None:intergenic
CGGTCAGCTCTCGAAGGAGA+AGG 0.551166 7_1:-79161070 Msa1041600:five_prime_UTR
TTAATCCCATGATGGCTCAA+AGG 0.553842 7_1:-79159784 Msa1041600:CDS
GGTGCAATAGGACCTGGCCT+AGG 0.554182 7_1:+79159659 None:intergenic
CTACCTGGTGCAATAGGACC+TGG 0.555824 7_1:+79159653 None:intergenic
TCATCATAGGTCTCATCCCT+GGG 0.559450 7_1:+79159684 None:intergenic
GAAGGCCTTTGAGCCATCAT+GGG 0.560813 7_1:+79159779 None:intergenic
GGTTGATGGTGGTTGTGTGT+TGG 0.561776 7_1:+79159064 None:intergenic
ACTGCAGCACCAGCCTCCAA+TGG 0.564353 7_1:-79159167 Msa1041600:CDS
GACGATGCTGATGAATTGGC+TGG 0.569898 7_1:+79159113 None:intergenic
TACATTGCTGATGAAACCAT+GGG 0.570715 7_1:+79159137 None:intergenic
TAGTGTCGGCGGCCTAGGAA+GGG 0.571573 7_1:+79159217 None:intergenic
CCAGGTGGAGGTAAAGTTGG+TGG 0.573537 7_1:+79159269 None:intergenic
GACACTACCTCCACCGCCGA+TGG 0.575760 7_1:-79159201 Msa1041600:CDS
ACCCTAAACTTACAGAATCG+TGG 0.576458 7_1:+79160898 None:intergenic
CCTATGATGATGCCTAGGCC+AGG 0.577794 7_1:-79159671 Msa1041600:CDS
AAAGGATTAAGGAACATCTC+GGG 0.582177 7_1:-79159841 Msa1041600:CDS
TGCCAACACTCAACCACCTG+AGG 0.583983 7_1:-79159021 Msa1041600:CDS
ATCGGCGGTGGAGGTAGTGT+CGG 0.584119 7_1:+79159203 None:intergenic
TCATAGCCTCCGGTTGATGG+TGG 0.584534 7_1:+79159053 None:intergenic
GCAGTGTTTCCAGGAACCAT+CGG 0.587962 7_1:+79159185 None:intergenic
TGAGACCTATGATGATGCCT+AGG 0.594416 7_1:-79159676 Msa1041600:CDS
TCGAATTCATCATCACTGAT+CGG 0.594732 7_1:-79161090 Msa1041600:five_prime_UTR
ACTAAGGGAGCACCAGGTGG+AGG 0.596231 7_1:+79159257 None:intergenic
GTGGACAACAACTATTCCCA+GGG 0.611701 7_1:-79159700 Msa1041600:CDS
TTGCTTGCTATGGTGTAGTG+GGG 0.611795 7_1:+79161151 None:intergenic
GGAGGATATTATTCTGCACC+TGG 0.619316 7_1:-79159296 Msa1041600:CDS
ACTGATCGGTCAGCTCTCGA+AGG 0.619317 7_1:-79161076 Msa1041600:five_prime_UTR
AGGCCAGGTCCTATTGCACC+AGG 0.620759 7_1:-79159656 Msa1041600:intron
GTGTTTCCAGGAACCATCGG+CGG 0.629869 7_1:+79159188 None:intergenic
TGCTTGCTATGGTGTAGTGG+GGG 0.631140 7_1:+79161152 None:intergenic
TACAGAATCGTGGGTCAAGT+AGG 0.633490 7_1:+79160908 None:intergenic
GGCGGTGGAGGTAGTGTCGG+CGG 0.639369 7_1:+79159206 None:intergenic
TGCCCATCTTGCCACCACCA+AGG 0.656688 7_1:-79159754 Msa1041600:CDS
ATACATTGCTGATGAAACCA+TGG 0.663040 7_1:+79159136 None:intergenic
GCCAACACTCAACCACCTGA+GGG 0.666069 7_1:-79159020 Msa1041600:CDS
GGTACTAAGGGAGCACCAGG+TGG 0.691774 7_1:+79159254 None:intergenic
TCATCAGCATCGTCAACCGG+AGG 0.693685 7_1:-79159104 Msa1041600:CDS
AAAGAAGTACCGAGGCATCG+CGG 0.710829 7_1:+79161030 None:intergenic
ACACAACCACCATCAACCGG+AGG 0.721262 7_1:-79159059 Msa1041600:CDS
ACATTGCTGATGAAACCATG+GGG 0.722803 7_1:+79159138 None:intergenic
ATTGCTGATGAAACCATGGG+GGG 0.729472 7_1:+79159140 None:intergenic
CATTGCTGATGAAACCATGG+GGG 0.738483 7_1:+79159139 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCACTTTAAAATTTT+AGG - chr7_1:79159043-79159062 Msa1041600:CDS 10.0%
!!! ATTTTCACTTTAAAATTTTA+GGG - chr7_1:79159044-79159063 Msa1041600:CDS 10.0%
!! TATTTATAATGTGTATATTA+AGG - chr7_1:79159776-79159795 Msa1041600:CDS 10.0%
!!! TATTTTCACTTTAAAATTTT+AGG - chr7_1:79159043-79159062 Msa1041600:CDS 10.0%
!!! ATTTTCACTTTAAAATTTTA+GGG - chr7_1:79159044-79159063 Msa1041600:CDS 10.0%
!! TATTTATAATGTGTATATTA+AGG - chr7_1:79159776-79159795 Msa1041600:CDS 10.0%
!!! TTTTATTTGGTAAAAAATAG+TGG - chr7_1:79159799-79159818 Msa1041600:CDS 15.0%
!!! TTTTATTTGGTAAAAAATAG+TGG - chr7_1:79159799-79159818 Msa1041600:CDS 15.0%
!! TGAAAATAATCTATCTATCT+TGG + chr7_1:79159031-79159050 None:intergenic 20.0%
!!! TTTGTTTTAATTCCATGAAA+AGG - chr7_1:79159387-79159406 Msa1041600:intron 20.0%
!!! TATTTTTTGCTATTTTCACA+TGG - chr7_1:79159655-79159674 Msa1041600:intron 20.0%
!!! GTGTATATTAAGGTTTTATT+TGG - chr7_1:79159786-79159805 Msa1041600:CDS 20.0%
!! GTAGATAAATTTGTAGTATT+TGG - chr7_1:79159865-79159884 Msa1041600:CDS 20.0%
!!! TAATGTCTTTTCATCTTTTA+AGG - chr7_1:79160311-79160330 Msa1041600:intron 20.0%
!! TTTAATTGATCAAAGGATTA+AGG - chr7_1:79160383-79160402 Msa1041600:intron 20.0%
!! TGAAAATAATCTATCTATCT+TGG + chr7_1:79159031-79159050 None:intergenic 20.0%
!!! TTTGTTTTAATTCCATGAAA+AGG - chr7_1:79159387-79159406 Msa1041600:intron 20.0%
!!! TATTTTTTGCTATTTTCACA+TGG - chr7_1:79159655-79159674 Msa1041600:intron 20.0%
!!! GTGTATATTAAGGTTTTATT+TGG - chr7_1:79159786-79159805 Msa1041600:CDS 20.0%
!! GTAGATAAATTTGTAGTATT+TGG - chr7_1:79159865-79159884 Msa1041600:CDS 20.0%
!!! TAATGTCTTTTCATCTTTTA+AGG - chr7_1:79160311-79160330 Msa1041600:intron 20.0%
!! TTTAATTGATCAAAGGATTA+AGG - chr7_1:79160383-79160402 Msa1041600:intron 20.0%
! AAAAAAAAAGTGAGTGATTG+AGG + chr7_1:79159268-79159287 None:intergenic 25.0%
!! TTAGGGTTATACAATTTTGA+TGG - chr7_1:79159353-79159372 Msa1041600:intron 25.0%
!!! AGTATTGTTAGTTTTTATGC+TGG + chr7_1:79159608-79159627 None:intergenic 25.0%
! TAACACATTCATACACAAAA+TGG + chr7_1:79159714-79159733 None:intergenic 25.0%
! GTAGTATTTGGTAAAATTAG+CGG - chr7_1:79159877-79159896 Msa1041600:CDS 25.0%
!!! TTACGAGCATTTTTTTTAAC+GGG + chr7_1:79160085-79160104 None:intergenic 25.0%
!!! CTTACGAGCATTTTTTTTAA+CGG + chr7_1:79160086-79160105 None:intergenic 25.0%
! CCTTTGATCAATTAAACTTT+GGG + chr7_1:79160379-79160398 None:intergenic 25.0%
! TCCTTTGATCAATTAAACTT+TGG + chr7_1:79160380-79160399 None:intergenic 25.0%
! TATATCTGCATGTAAAATGA+GGG + chr7_1:79160655-79160674 None:intergenic 25.0%
!!! TTGATTGACTTTCATTTTCT+TGG - chr7_1:79160742-79160761 Msa1041600:intron 25.0%
!!! TGATTGACTTTCATTTTCTT+GGG - chr7_1:79160743-79160762 Msa1041600:intron 25.0%
!! ATTTTTCCAACTATGTTACT+TGG - chr7_1:79160773-79160792 Msa1041600:intron 25.0%
! AAAAAAAAAGTGAGTGATTG+AGG + chr7_1:79159268-79159287 None:intergenic 25.0%
!! TTAGGGTTATACAATTTTGA+TGG - chr7_1:79159353-79159372 Msa1041600:intron 25.0%
!!! AGTATTGTTAGTTTTTATGC+TGG + chr7_1:79159608-79159627 None:intergenic 25.0%
! TAACACATTCATACACAAAA+TGG + chr7_1:79159714-79159733 None:intergenic 25.0%
! GTAGTATTTGGTAAAATTAG+CGG - chr7_1:79159877-79159896 Msa1041600:CDS 25.0%
!!! TTACGAGCATTTTTTTTAAC+GGG + chr7_1:79160085-79160104 None:intergenic 25.0%
!!! CTTACGAGCATTTTTTTTAA+CGG + chr7_1:79160086-79160105 None:intergenic 25.0%
! CCTTTGATCAATTAAACTTT+GGG + chr7_1:79160379-79160398 None:intergenic 25.0%
! TCCTTTGATCAATTAAACTT+TGG + chr7_1:79160380-79160399 None:intergenic 25.0%
! TATATCTGCATGTAAAATGA+GGG + chr7_1:79160655-79160674 None:intergenic 25.0%
!!! TTGATTGACTTTCATTTTCT+TGG - chr7_1:79160742-79160761 Msa1041600:intron 25.0%
!!! TGATTGACTTTCATTTTCTT+GGG - chr7_1:79160743-79160762 Msa1041600:intron 25.0%
!! ATTTTTCCAACTATGTTACT+TGG - chr7_1:79160773-79160792 Msa1041600:intron 25.0%
!! ATCTATCTTGGTTTTTGTCA+AGG + chr7_1:79159019-79159038 None:intergenic 30.0%
! AAGCAAGTAATAGCGTTTTA+GGG - chr7_1:79159101-79159120 Msa1041600:CDS 30.0%
!! ATTTGAATAAAGAAGTACCG+AGG + chr7_1:79159216-79159235 None:intergenic 30.0%
!! TTATGTTGCTTTCTTACAGA+TGG + chr7_1:79159468-79159487 None:intergenic 30.0%
GTAAGAAAGCAACATAATTC+AGG - chr7_1:79159471-79159490 Msa1041600:intron 30.0%
! TAATTCAGGTTACAAACACA+AGG - chr7_1:79159485-79159504 Msa1041600:intron 30.0%
GCAGAAAGAACATACAATTA+AGG + chr7_1:79159539-79159558 None:intergenic 30.0%
!!! AGTCAGCATTGTTTTTAATG+CGG - chr7_1:79159688-79159707 Msa1041600:CDS 30.0%
!!! CTTTTTTCAATCGAGATATC+AGG - chr7_1:79159958-79159977 Msa1041600:intron 30.0%
CGTTAAAAAAAATGCTCGTA+AGG - chr7_1:79160084-79160103 Msa1041600:intron 30.0%
ACGACAAGATGATTGTATTA+AGG - chr7_1:79160232-79160251 Msa1041600:intron 30.0%
CCCAAAGTTTAATTGATCAA+AGG - chr7_1:79160376-79160395 Msa1041600:intron 30.0%
CTATATCTGCATGTAAAATG+AGG + chr7_1:79160656-79160675 None:intergenic 30.0%
TGTGATTATGAGTATGTTGA+TGG - chr7_1:79160704-79160723 Msa1041600:intron 30.0%
AAACAACCAAGTAACATAGT+TGG + chr7_1:79160782-79160801 None:intergenic 30.0%
! AACTATGTTACTTGGTTGTT+TGG - chr7_1:79160781-79160800 Msa1041600:intron 30.0%
!! ATCTATCTTGGTTTTTGTCA+AGG + chr7_1:79159019-79159038 None:intergenic 30.0%
! AAGCAAGTAATAGCGTTTTA+GGG - chr7_1:79159101-79159120 Msa1041600:CDS 30.0%
!! ATTTGAATAAAGAAGTACCG+AGG + chr7_1:79159216-79159235 None:intergenic 30.0%
!! TTATGTTGCTTTCTTACAGA+TGG + chr7_1:79159468-79159487 None:intergenic 30.0%
GTAAGAAAGCAACATAATTC+AGG - chr7_1:79159471-79159490 Msa1041600:intron 30.0%
! TAATTCAGGTTACAAACACA+AGG - chr7_1:79159485-79159504 Msa1041600:intron 30.0%
GCAGAAAGAACATACAATTA+AGG + chr7_1:79159539-79159558 None:intergenic 30.0%
!!! AGTCAGCATTGTTTTTAATG+CGG - chr7_1:79159688-79159707 Msa1041600:CDS 30.0%
!!! CTTTTTTCAATCGAGATATC+AGG - chr7_1:79159958-79159977 Msa1041600:intron 30.0%
CGTTAAAAAAAATGCTCGTA+AGG - chr7_1:79160084-79160103 Msa1041600:intron 30.0%
ACGACAAGATGATTGTATTA+AGG - chr7_1:79160232-79160251 Msa1041600:intron 30.0%
CCCAAAGTTTAATTGATCAA+AGG - chr7_1:79160376-79160395 Msa1041600:intron 30.0%
CTATATCTGCATGTAAAATG+AGG + chr7_1:79160656-79160675 None:intergenic 30.0%
TGTGATTATGAGTATGTTGA+TGG - chr7_1:79160704-79160723 Msa1041600:intron 30.0%
AAACAACCAAGTAACATAGT+TGG + chr7_1:79160782-79160801 None:intergenic 30.0%
! AACTATGTTACTTGGTTGTT+TGG - chr7_1:79160781-79160800 Msa1041600:intron 30.0%
! CAAGCAAGTAATAGCGTTTT+AGG - chr7_1:79159100-79159119 Msa1041600:CDS 35.0%
! AGCAAGTAATAGCGTTTTAG+GGG - chr7_1:79159102-79159121 Msa1041600:CDS 35.0%
TCGAATTCATCATCACTGAT+CGG - chr7_1:79159145-79159164 Msa1041600:CDS 35.0%
! TGTGACTAACAACCTTTTCA+TGG + chr7_1:79159402-79159421 None:intergenic 35.0%
! GTTACAAACACAAGGTACTA+TGG - chr7_1:79159493-79159512 Msa1041600:intron 35.0%
TTGTATGTTCTTTCTGCTAG+TGG - chr7_1:79159542-79159561 Msa1041600:intron 35.0%
!!! GTTAGTTTTTATGCTGGATC+TGG + chr7_1:79159602-79159621 None:intergenic 35.0%
GAGAGATGAGAATTCAAAGT+TGG + chr7_1:79159742-79159761 None:intergenic 35.0%
! CTGATAAGCTAGCTTATAGT+GGG - chr7_1:79159826-79159845 Msa1041600:CDS 35.0%
!!! TATCCTGACACAGTTTTGTT+TGG + chr7_1:79160188-79160207 None:intergenic 35.0%
!!! CATCTTTTAAGGCAAATGTG+AGG - chr7_1:79160322-79160341 Msa1041600:intron 35.0%
TTTGTTGCTCTTCAAATTGC+AGG + chr7_1:79160356-79160375 None:intergenic 35.0%
CAAAGGATTAAGGAACATCT+CGG - chr7_1:79160393-79160412 Msa1041600:intron 35.0%
AAAGGATTAAGGAACATCTC+GGG - chr7_1:79160394-79160413 Msa1041600:intron 35.0%
! TGTAGCTTTTAATCCCATGA+TGG - chr7_1:79160443-79160462 Msa1041600:intron 35.0%
AGATGCTTCAATGAAAAGAG+CGG + chr7_1:79160628-79160647 None:intergenic 35.0%
CATACTCATAATCACATTCG+AGG + chr7_1:79160700-79160719 None:intergenic 35.0%
! AACTAGTTGCTTTGTTCATG+TGG - chr7_1:79160889-79160908 Msa1041600:intron 35.0%
TTTGTTTGACCAGGTACTAA+GGG + chr7_1:79160996-79161015 None:intergenic 35.0%
TACATTGCTGATGAAACCAT+GGG + chr7_1:79161101-79161120 None:intergenic 35.0%
ATACATTGCTGATGAAACCA+TGG + chr7_1:79161102-79161121 None:intergenic 35.0%
ATTGTAACTTTCATAGCCTC+CGG + chr7_1:79161150-79161169 None:intergenic 35.0%
ATTGTAACTTTCATAGCCTC+CGG + chr7_1:79161150-79161169 None:intergenic 35.0%
! CAAGCAAGTAATAGCGTTTT+AGG - chr7_1:79159100-79159119 Msa1041600:CDS 35.0%
! AGCAAGTAATAGCGTTTTAG+GGG - chr7_1:79159102-79159121 Msa1041600:CDS 35.0%
TCGAATTCATCATCACTGAT+CGG - chr7_1:79159145-79159164 Msa1041600:CDS 35.0%
! TGTGACTAACAACCTTTTCA+TGG + chr7_1:79159402-79159421 None:intergenic 35.0%
! GTTACAAACACAAGGTACTA+TGG - chr7_1:79159493-79159512 Msa1041600:intron 35.0%
TTGTATGTTCTTTCTGCTAG+TGG - chr7_1:79159542-79159561 Msa1041600:intron 35.0%
!!! GTTAGTTTTTATGCTGGATC+TGG + chr7_1:79159602-79159621 None:intergenic 35.0%
GAGAGATGAGAATTCAAAGT+TGG + chr7_1:79159742-79159761 None:intergenic 35.0%
! CTGATAAGCTAGCTTATAGT+GGG - chr7_1:79159826-79159845 Msa1041600:CDS 35.0%
!!! TATCCTGACACAGTTTTGTT+TGG + chr7_1:79160188-79160207 None:intergenic 35.0%
!!! CATCTTTTAAGGCAAATGTG+AGG - chr7_1:79160322-79160341 Msa1041600:intron 35.0%
TTTGTTGCTCTTCAAATTGC+AGG + chr7_1:79160356-79160375 None:intergenic 35.0%
CAAAGGATTAAGGAACATCT+CGG - chr7_1:79160393-79160412 Msa1041600:intron 35.0%
AAAGGATTAAGGAACATCTC+GGG - chr7_1:79160394-79160413 Msa1041600:intron 35.0%
! TGTAGCTTTTAATCCCATGA+TGG - chr7_1:79160443-79160462 Msa1041600:intron 35.0%
AGATGCTTCAATGAAAAGAG+CGG + chr7_1:79160628-79160647 None:intergenic 35.0%
CATACTCATAATCACATTCG+AGG + chr7_1:79160700-79160719 None:intergenic 35.0%
! AACTAGTTGCTTTGTTCATG+TGG - chr7_1:79160889-79160908 Msa1041600:intron 35.0%
TTTGTTTGACCAGGTACTAA+GGG + chr7_1:79160996-79161015 None:intergenic 35.0%
TACATTGCTGATGAAACCAT+GGG + chr7_1:79161101-79161120 None:intergenic 35.0%
ATACATTGCTGATGAAACCA+TGG + chr7_1:79161102-79161121 None:intergenic 35.0%
ATTGTAACTTTCATAGCCTC+CGG + chr7_1:79161150-79161169 None:intergenic 35.0%
ATTGTAACTTTCATAGCCTC+CGG + chr7_1:79161150-79161169 None:intergenic 35.0%
! ACGCTATTACTTGCTTGCTA+TGG + chr7_1:79159097-79159116 None:intergenic 40.0%
CATCGCGGTTTGAATTGTAA+TGG + chr7_1:79159193-79159212 None:intergenic 40.0%
AGTAGTAGCTGCAAATTGGA+AGG + chr7_1:79159292-79159311 None:intergenic 40.0%
TCACAGTAGTAGCTGCAAAT+TGG + chr7_1:79159296-79159315 None:intergenic 40.0%
ACCCACGATTCTGTAAGTTT+AGG - chr7_1:79159335-79159354 Msa1041600:intron 40.0%
CCCTAAACTTACAGAATCGT+GGG + chr7_1:79159339-79159358 None:intergenic 40.0%
CCCACGATTCTGTAAGTTTA+GGG - chr7_1:79159336-79159355 Msa1041600:intron 40.0%
ACCCTAAACTTACAGAATCG+TGG + chr7_1:79159340-79159359 None:intergenic 40.0%
!! TGGTGTCATAAGAAGGTCTT+GGG - chr7_1:79159562-79159581 Msa1041600:intron 40.0%
TCATAAGAAGGTCTTGGGTT+TGG - chr7_1:79159567-79159586 Msa1041600:intron 40.0%
CATAAGAAGGTCTTGGGTTT+GGG - chr7_1:79159568-79159587 Msa1041600:intron 40.0%
! GCTGATAAGCTAGCTTATAG+TGG - chr7_1:79159825-79159844 Msa1041600:CDS 40.0%
TCGAGATATCAGGCGTAAAA+TGG - chr7_1:79159968-79159987 Msa1041600:intron 40.0%
TTGCCAAACAAAACTGTGTC+AGG - chr7_1:79160182-79160201 Msa1041600:intron 40.0%
TTAATCCCATGATGGCTCAA+AGG - chr7_1:79160451-79160470 Msa1041600:intron 40.0%
CTTTGTTCATGTGGTGTAAC+TGG - chr7_1:79160898-79160917 Msa1041600:intron 40.0%
GTTTGTTTGACCAGGTACTA+AGG + chr7_1:79160997-79161016 None:intergenic 40.0%
ACATTGCTGATGAAACCATG+GGG + chr7_1:79161100-79161119 None:intergenic 40.0%
AATTCATCAGCATCGTCAAC+CGG - chr7_1:79161128-79161147 Msa1041600:five_prime_UTR 40.0%
! ACGCTATTACTTGCTTGCTA+TGG + chr7_1:79159097-79159116 None:intergenic 40.0%
CATCGCGGTTTGAATTGTAA+TGG + chr7_1:79159193-79159212 None:intergenic 40.0%
AGTAGTAGCTGCAAATTGGA+AGG + chr7_1:79159292-79159311 None:intergenic 40.0%
TCACAGTAGTAGCTGCAAAT+TGG + chr7_1:79159296-79159315 None:intergenic 40.0%
ACCCACGATTCTGTAAGTTT+AGG - chr7_1:79159335-79159354 Msa1041600:intron 40.0%
CCCTAAACTTACAGAATCGT+GGG + chr7_1:79159339-79159358 None:intergenic 40.0%
CCCACGATTCTGTAAGTTTA+GGG - chr7_1:79159336-79159355 Msa1041600:intron 40.0%
ACCCTAAACTTACAGAATCG+TGG + chr7_1:79159340-79159359 None:intergenic 40.0%
!! TGGTGTCATAAGAAGGTCTT+GGG - chr7_1:79159562-79159581 Msa1041600:intron 40.0%
TCATAAGAAGGTCTTGGGTT+TGG - chr7_1:79159567-79159586 Msa1041600:intron 40.0%
CATAAGAAGGTCTTGGGTTT+GGG - chr7_1:79159568-79159587 Msa1041600:intron 40.0%
! GCTGATAAGCTAGCTTATAG+TGG - chr7_1:79159825-79159844 Msa1041600:CDS 40.0%
TCGAGATATCAGGCGTAAAA+TGG - chr7_1:79159968-79159987 Msa1041600:intron 40.0%
TTGCCAAACAAAACTGTGTC+AGG - chr7_1:79160182-79160201 Msa1041600:intron 40.0%
TTAATCCCATGATGGCTCAA+AGG - chr7_1:79160451-79160470 Msa1041600:intron 40.0%
CTTTGTTCATGTGGTGTAAC+TGG - chr7_1:79160898-79160917 Msa1041600:intron 40.0%
GTTTGTTTGACCAGGTACTA+AGG + chr7_1:79160997-79161016 None:intergenic 40.0%
ACATTGCTGATGAAACCATG+GGG + chr7_1:79161100-79161119 None:intergenic 40.0%
AATTCATCAGCATCGTCAAC+CGG - chr7_1:79161128-79161147 Msa1041600:five_prime_UTR 40.0%
!! TTGCTTGCTATGGTGTAGTG+GGG + chr7_1:79159087-79159106 None:intergenic 45.0%
!! CTTGCTTGCTATGGTGTAGT+GGG + chr7_1:79159088-79159107 None:intergenic 45.0%
!! ACTTGCTTGCTATGGTGTAG+TGG + chr7_1:79159089-79159108 None:intergenic 45.0%
TACAGAATCGTGGGTCAAGT+AGG + chr7_1:79159330-79159349 None:intergenic 45.0%
!! CTGCTAGTGGTGTCATAAGA+AGG - chr7_1:79159555-79159574 Msa1041600:intron 45.0%
!! GTGGTGTCATAAGAAGGTCT+TGG - chr7_1:79159561-79159580 Msa1041600:intron 45.0%
GTGGACAACAACTATTCCCA+GGG - chr7_1:79160535-79160554 Msa1041600:intron 45.0%
TCATCATAGGTCTCATCCCT+GGG + chr7_1:79160554-79160573 None:intergenic 45.0%
ATCATCATAGGTCTCATCCC+TGG + chr7_1:79160555-79160574 None:intergenic 45.0%
! TGAGACCTATGATGATGCCT+AGG - chr7_1:79160559-79160578 Msa1041600:intron 45.0%
TGGTATCTACCTGGTGCAAT+AGG + chr7_1:79160591-79160610 None:intergenic 45.0%
TGGTAGAGATGGTATCTACC+TGG + chr7_1:79160600-79160619 None:intergenic 45.0%
TGATGCTTGAACATGAGCAC+AGG + chr7_1:79160867-79160886 None:intergenic 45.0%
! GTGGTGTAACTGGTTTCGTT+TGG - chr7_1:79160908-79160927 Msa1041600:intron 45.0%
! TGGTTTCGTTTGGAATGCAC+AGG - chr7_1:79160918-79160937 Msa1041600:CDS 45.0%
! TTTCGTTTGGAATGCACAGG+AGG - chr7_1:79160921-79160940 Msa1041600:CDS 45.0%
GGAGGATATTATTCTGCACC+TGG - chr7_1:79160939-79160958 Msa1041600:intron 45.0%
GTCAAACAAACACCCTTCCT+AGG - chr7_1:79161006-79161025 Msa1041600:intron 45.0%
ATTGCTGATGAAACCATGGG+GGG + chr7_1:79161098-79161117 None:intergenic 45.0%
CATTGCTGATGAAACCATGG+GGG + chr7_1:79161099-79161118 None:intergenic 45.0%
GGTTGACGATGCTGATGAAT+TGG + chr7_1:79161129-79161148 None:intergenic 45.0%
AACACACAACCACCATCAAC+CGG - chr7_1:79161173-79161192 Msa1041600:five_prime_UTR 45.0%
!! TTGCTTGCTATGGTGTAGTG+GGG + chr7_1:79159087-79159106 None:intergenic 45.0%
!! CTTGCTTGCTATGGTGTAGT+GGG + chr7_1:79159088-79159107 None:intergenic 45.0%
!! ACTTGCTTGCTATGGTGTAG+TGG + chr7_1:79159089-79159108 None:intergenic 45.0%
TACAGAATCGTGGGTCAAGT+AGG + chr7_1:79159330-79159349 None:intergenic 45.0%
!! CTGCTAGTGGTGTCATAAGA+AGG - chr7_1:79159555-79159574 Msa1041600:intron 45.0%
!! GTGGTGTCATAAGAAGGTCT+TGG - chr7_1:79159561-79159580 Msa1041600:intron 45.0%
GTGGACAACAACTATTCCCA+GGG - chr7_1:79160535-79160554 Msa1041600:intron 45.0%
TCATCATAGGTCTCATCCCT+GGG + chr7_1:79160554-79160573 None:intergenic 45.0%
ATCATCATAGGTCTCATCCC+TGG + chr7_1:79160555-79160574 None:intergenic 45.0%
! TGAGACCTATGATGATGCCT+AGG - chr7_1:79160559-79160578 Msa1041600:intron 45.0%
TGGTATCTACCTGGTGCAAT+AGG + chr7_1:79160591-79160610 None:intergenic 45.0%
TGGTAGAGATGGTATCTACC+TGG + chr7_1:79160600-79160619 None:intergenic 45.0%
TGATGCTTGAACATGAGCAC+AGG + chr7_1:79160867-79160886 None:intergenic 45.0%
! GTGGTGTAACTGGTTTCGTT+TGG - chr7_1:79160908-79160927 Msa1041600:intron 45.0%
! TGGTTTCGTTTGGAATGCAC+AGG - chr7_1:79160918-79160937 Msa1041600:CDS 45.0%
! TTTCGTTTGGAATGCACAGG+AGG - chr7_1:79160921-79160940 Msa1041600:CDS 45.0%
GGAGGATATTATTCTGCACC+TGG - chr7_1:79160939-79160958 Msa1041600:intron 45.0%
GTCAAACAAACACCCTTCCT+AGG - chr7_1:79161006-79161025 Msa1041600:intron 45.0%
ATTGCTGATGAAACCATGGG+GGG + chr7_1:79161098-79161117 None:intergenic 45.0%
CATTGCTGATGAAACCATGG+GGG + chr7_1:79161099-79161118 None:intergenic 45.0%
GGTTGACGATGCTGATGAAT+TGG + chr7_1:79161129-79161148 None:intergenic 45.0%
AACACACAACCACCATCAAC+CGG - chr7_1:79161173-79161192 Msa1041600:five_prime_UTR 45.0%
!! TGCTTGCTATGGTGTAGTGG+GGG + chr7_1:79159086-79159105 None:intergenic 50.0%
CAATTCAAACCGCGATGCCT+CGG - chr7_1:79159196-79159215 Msa1041600:CDS 50.0%
!! AAAGAAGTACCGAGGCATCG+CGG + chr7_1:79159208-79159227 None:intergenic 50.0%
GAAGGCCTTTGAGCCATCAT+GGG + chr7_1:79160459-79160478 None:intergenic 50.0%
AGAAGGCCTTTGAGCCATCA+TGG + chr7_1:79160460-79160479 None:intergenic 50.0%
!! AACCTTGGTGGTGGCAAGAT+GGG + chr7_1:79160486-79160505 None:intergenic 50.0%
CTTCCAGGAATTGGCAACCT+TGG + chr7_1:79160501-79160520 None:intergenic 50.0%
CCTGGAACACTTCCAGGAAT+TGG + chr7_1:79160510-79160529 None:intergenic 50.0%
!! CCAATTCCTGGAAGTGTTCC+AGG - chr7_1:79160507-79160526 Msa1041600:intron 50.0%
AGTTGTTGTCCACCAAAGCC+TGG + chr7_1:79160528-79160547 None:intergenic 50.0%
GGTGGACAACAACTATTCCC+AGG - chr7_1:79160534-79160553 Msa1041600:intron 50.0%
CAATGAAAAGAGCGGACGAG+TGG + chr7_1:79160620-79160639 None:intergenic 50.0%
!! GGAAGGGTGTTTGTTTGACC+AGG + chr7_1:79161005-79161024 None:intergenic 50.0%
GCAGTGTTTCCAGGAACCAT+CGG + chr7_1:79161053-79161072 None:intergenic 50.0%
GACGATGCTGATGAATTGGC+TGG + chr7_1:79161125-79161144 None:intergenic 50.0%
!! GGTTGATGGTGGTTGTGTGT+TGG + chr7_1:79161174-79161193 None:intergenic 50.0%
CTTTCATAGCCTCCGGTTGA+TGG + chr7_1:79161143-79161162 None:intergenic 50.0%
!! TGCTTGCTATGGTGTAGTGG+GGG + chr7_1:79159086-79159105 None:intergenic 50.0%
CAATTCAAACCGCGATGCCT+CGG - chr7_1:79159196-79159215 Msa1041600:CDS 50.0%
!! AAAGAAGTACCGAGGCATCG+CGG + chr7_1:79159208-79159227 None:intergenic 50.0%
GAAGGCCTTTGAGCCATCAT+GGG + chr7_1:79160459-79160478 None:intergenic 50.0%
AGAAGGCCTTTGAGCCATCA+TGG + chr7_1:79160460-79160479 None:intergenic 50.0%
!! AACCTTGGTGGTGGCAAGAT+GGG + chr7_1:79160486-79160505 None:intergenic 50.0%
CTTCCAGGAATTGGCAACCT+TGG + chr7_1:79160501-79160520 None:intergenic 50.0%
CCTGGAACACTTCCAGGAAT+TGG + chr7_1:79160510-79160529 None:intergenic 50.0%
!! CCAATTCCTGGAAGTGTTCC+AGG - chr7_1:79160507-79160526 Msa1041600:intron 50.0%
AGTTGTTGTCCACCAAAGCC+TGG + chr7_1:79160528-79160547 None:intergenic 50.0%
GGTGGACAACAACTATTCCC+AGG - chr7_1:79160534-79160553 Msa1041600:intron 50.0%
CAATGAAAAGAGCGGACGAG+TGG + chr7_1:79160620-79160639 None:intergenic 50.0%
!! GGAAGGGTGTTTGTTTGACC+AGG + chr7_1:79161005-79161024 None:intergenic 50.0%
GCAGTGTTTCCAGGAACCAT+CGG + chr7_1:79161053-79161072 None:intergenic 50.0%
GACGATGCTGATGAATTGGC+TGG + chr7_1:79161125-79161144 None:intergenic 50.0%
!! GGTTGATGGTGGTTGTGTGT+TGG + chr7_1:79161174-79161193 None:intergenic 50.0%
CTTTCATAGCCTCCGGTTGA+TGG + chr7_1:79161143-79161162 None:intergenic 50.0%
ACTGATCGGTCAGCTCTCGA+AGG - chr7_1:79159159-79159178 Msa1041600:CDS 55.0%
GCTGCAGCGTTTCAGCAAGT+TGG - chr7_1:79160420-79160439 Msa1041600:intron 55.0%
GGTGGCAAGATGGGCATAGA+AGG + chr7_1:79160477-79160496 None:intergenic 55.0%
!! CAACCTTGGTGGTGGCAAGA+TGG + chr7_1:79160487-79160506 None:intergenic 55.0%
GGAATTGGCAACCTTGGTGG+TGG + chr7_1:79160495-79160514 None:intergenic 55.0%
CCAGGAATTGGCAACCTTGG+TGG + chr7_1:79160498-79160517 None:intergenic 55.0%
CCACCAAGGTTGCCAATTCC+TGG - chr7_1:79160495-79160514 Msa1041600:intron 55.0%
CCAAAGCCTGGAACACTTCC+AGG + chr7_1:79160516-79160535 None:intergenic 55.0%
!! CCTGGAAGTGTTCCAGGCTT+TGG - chr7_1:79160513-79160532 Msa1041600:intron 55.0%
!! GGAAGTGTTCCAGGCTTTGG+TGG - chr7_1:79160516-79160535 Msa1041600:intron 55.0%
CCTGGCCTAGGCATCATCAT+AGG + chr7_1:79160567-79160586 None:intergenic 55.0%
! CCTATGATGATGCCTAGGCC+AGG - chr7_1:79160564-79160583 Msa1041600:intron 55.0%
CTACCTGGTGCAATAGGACC+TGG + chr7_1:79160585-79160604 None:intergenic 55.0%
!! GGTAAAGTTGGTGGCATGCC+AGG + chr7_1:79160960-79160979 None:intergenic 55.0%
CCAGGTGGAGGTAAAGTTGG+TGG + chr7_1:79160969-79160988 None:intergenic 55.0%
CCACCAACTTTACCTCCACC+TGG - chr7_1:79160966-79160985 Msa1041600:intron 55.0%
GCACCAGGTGGAGGTAAAGT+TGG + chr7_1:79160972-79160991 None:intergenic 55.0%
GTGTTTCCAGGAACCATCGG+CGG + chr7_1:79161050-79161069 None:intergenic 55.0%
TCATCAGCATCGTCAACCGG+AGG - chr7_1:79161131-79161150 Msa1041600:five_prime_UTR 55.0%
ACACAACCACCATCAACCGG+AGG - chr7_1:79161176-79161195 Msa1041600:five_prime_UTR 55.0%
!! TCATAGCCTCCGGTTGATGG+TGG + chr7_1:79161185-79161204 None:intergenic 55.0%
TGCCAACACTCAACCACCTG+AGG - chr7_1:79161214-79161233 Msa1041600:five_prime_UTR 55.0%
GCCAACACTCAACCACCTGA+GGG - chr7_1:79161215-79161234 Msa1041600:five_prime_UTR 55.0%
TCCCTCAGGTGGTTGAGTGT+TGG + chr7_1:79161219-79161238 None:intergenic 55.0%
ACTGATCGGTCAGCTCTCGA+AGG - chr7_1:79159159-79159178 Msa1041600:CDS 55.0%
GCTGCAGCGTTTCAGCAAGT+TGG - chr7_1:79160420-79160439 Msa1041600:intron 55.0%
GGTGGCAAGATGGGCATAGA+AGG + chr7_1:79160477-79160496 None:intergenic 55.0%
!! CAACCTTGGTGGTGGCAAGA+TGG + chr7_1:79160487-79160506 None:intergenic 55.0%
GGAATTGGCAACCTTGGTGG+TGG + chr7_1:79160495-79160514 None:intergenic 55.0%
CCAGGAATTGGCAACCTTGG+TGG + chr7_1:79160498-79160517 None:intergenic 55.0%
CCACCAAGGTTGCCAATTCC+TGG - chr7_1:79160495-79160514 Msa1041600:intron 55.0%
CCAAAGCCTGGAACACTTCC+AGG + chr7_1:79160516-79160535 None:intergenic 55.0%
!! CCTGGAAGTGTTCCAGGCTT+TGG - chr7_1:79160513-79160532 Msa1041600:intron 55.0%
!! GGAAGTGTTCCAGGCTTTGG+TGG - chr7_1:79160516-79160535 Msa1041600:intron 55.0%
CCTGGCCTAGGCATCATCAT+AGG + chr7_1:79160567-79160586 None:intergenic 55.0%
! CCTATGATGATGCCTAGGCC+AGG - chr7_1:79160564-79160583 Msa1041600:intron 55.0%
CTACCTGGTGCAATAGGACC+TGG + chr7_1:79160585-79160604 None:intergenic 55.0%
!! GGTAAAGTTGGTGGCATGCC+AGG + chr7_1:79160960-79160979 None:intergenic 55.0%
CCAGGTGGAGGTAAAGTTGG+TGG + chr7_1:79160969-79160988 None:intergenic 55.0%
CCACCAACTTTACCTCCACC+TGG - chr7_1:79160966-79160985 Msa1041600:intron 55.0%
GCACCAGGTGGAGGTAAAGT+TGG + chr7_1:79160972-79160991 None:intergenic 55.0%
GTGTTTCCAGGAACCATCGG+CGG + chr7_1:79161050-79161069 None:intergenic 55.0%
TCATCAGCATCGTCAACCGG+AGG - chr7_1:79161131-79161150 Msa1041600:five_prime_UTR 55.0%
ACACAACCACCATCAACCGG+AGG - chr7_1:79161176-79161195 Msa1041600:five_prime_UTR 55.0%
!! TCATAGCCTCCGGTTGATGG+TGG + chr7_1:79161185-79161204 None:intergenic 55.0%
TGCCAACACTCAACCACCTG+AGG - chr7_1:79161214-79161233 Msa1041600:five_prime_UTR 55.0%
GCCAACACTCAACCACCTGA+GGG - chr7_1:79161215-79161234 Msa1041600:five_prime_UTR 55.0%
TCCCTCAGGTGGTTGAGTGT+TGG + chr7_1:79161219-79161238 None:intergenic 55.0%
CGGTCAGCTCTCGAAGGAGA+AGG - chr7_1:79159165-79159184 Msa1041600:CDS 60.0%
TGCCCATCTTGCCACCACCA+AGG - chr7_1:79160481-79160500 Msa1041600:intron 60.0%
GGTGCAATAGGACCTGGCCT+AGG + chr7_1:79160579-79160598 None:intergenic 60.0%
AGGCCAGGTCCTATTGCACC+AGG - chr7_1:79160579-79160598 Msa1041600:intron 60.0%
GAGCGGACGAGTGGTAGAGA+TGG + chr7_1:79160611-79160630 None:intergenic 60.0%
!! ACTAAGGGAGCACCAGGTGG+AGG + chr7_1:79160981-79161000 None:intergenic 60.0%
!! GGTACTAAGGGAGCACCAGG+TGG + chr7_1:79160984-79161003 None:intergenic 60.0%
!! CCAGGTACTAAGGGAGCACC+AGG + chr7_1:79160987-79161006 None:intergenic 60.0%
CCTGGTGCTCCCTTAGTACC+TGG - chr7_1:79160984-79161003 Msa1041600:intron 60.0%
!! TAGTGTCGGCGGCCTAGGAA+GGG + chr7_1:79161021-79161040 None:intergenic 60.0%
ATCGGCGGTGGAGGTAGTGT+CGG + chr7_1:79161035-79161054 None:intergenic 60.0%
TTTCCAGGAACCATCGGCGG+TGG + chr7_1:79161047-79161066 None:intergenic 60.0%
!! GCTGGTGCTGCAGTGTTTCC+AGG + chr7_1:79161062-79161081 None:intergenic 60.0%
ACTGCAGCACCAGCCTCCAA+TGG - chr7_1:79161068-79161087 Msa1041600:five_prime_UTR 60.0%
CGGTCAGCTCTCGAAGGAGA+AGG - chr7_1:79159165-79159184 Msa1041600:CDS 60.0%
TGCCCATCTTGCCACCACCA+AGG - chr7_1:79160481-79160500 Msa1041600:intron 60.0%
GGTGCAATAGGACCTGGCCT+AGG + chr7_1:79160579-79160598 None:intergenic 60.0%
AGGCCAGGTCCTATTGCACC+AGG - chr7_1:79160579-79160598 Msa1041600:intron 60.0%
GAGCGGACGAGTGGTAGAGA+TGG + chr7_1:79160611-79160630 None:intergenic 60.0%
!! ACTAAGGGAGCACCAGGTGG+AGG + chr7_1:79160981-79161000 None:intergenic 60.0%
!! GGTACTAAGGGAGCACCAGG+TGG + chr7_1:79160984-79161003 None:intergenic 60.0%
!! CCAGGTACTAAGGGAGCACC+AGG + chr7_1:79160987-79161006 None:intergenic 60.0%
CCTGGTGCTCCCTTAGTACC+TGG - chr7_1:79160984-79161003 Msa1041600:intron 60.0%
!! TAGTGTCGGCGGCCTAGGAA+GGG + chr7_1:79161021-79161040 None:intergenic 60.0%
ATCGGCGGTGGAGGTAGTGT+CGG + chr7_1:79161035-79161054 None:intergenic 60.0%
TTTCCAGGAACCATCGGCGG+TGG + chr7_1:79161047-79161066 None:intergenic 60.0%
!! GCTGGTGCTGCAGTGTTTCC+AGG + chr7_1:79161062-79161081 None:intergenic 60.0%
ACTGCAGCACCAGCCTCCAA+TGG - chr7_1:79161068-79161087 Msa1041600:five_prime_UTR 60.0%
!! GTAGTGTCGGCGGCCTAGGA+AGG + chr7_1:79161022-79161041 None:intergenic 65.0%
GACACTACCTCCACCGCCGA+TGG - chr7_1:79161034-79161053 Msa1041600:intron 65.0%
!! AACCATGGGGGGAGCGCCAT+TGG + chr7_1:79161087-79161106 None:intergenic 65.0%
!! GTAGTGTCGGCGGCCTAGGA+AGG + chr7_1:79161022-79161041 None:intergenic 65.0%
GACACTACCTCCACCGCCGA+TGG - chr7_1:79161034-79161053 Msa1041600:intron 65.0%
!! AACCATGGGGGGAGCGCCAT+TGG + chr7_1:79161087-79161106 None:intergenic 65.0%
!! GGAGGTAGTGTCGGCGGCCT+AGG + chr7_1:79161026-79161045 None:intergenic 70.0%
! GGCGGTGGAGGTAGTGTCGG+CGG + chr7_1:79161032-79161051 None:intergenic 70.0%
CCAGGAACCATCGGCGGTGG+AGG + chr7_1:79161044-79161063 None:intergenic 70.0%
CCTCCACCGCCGATGGTTCC+TGG - chr7_1:79161041-79161060 Msa1041600:exon 70.0%
!! CATGGGGGGAGCGCCATTGG+AGG + chr7_1:79161084-79161103 None:intergenic 70.0%
CTCCAATGGCGCTCCCCCCA+TGG - chr7_1:79161082-79161101 Msa1041600:five_prime_UTR 70.0%
!! GGAGGTAGTGTCGGCGGCCT+AGG + chr7_1:79161026-79161045 None:intergenic 70.0%
! GGCGGTGGAGGTAGTGTCGG+CGG + chr7_1:79161032-79161051 None:intergenic 70.0%
CCAGGAACCATCGGCGGTGG+AGG + chr7_1:79161044-79161063 None:intergenic 70.0%
CCTCCACCGCCGATGGTTCC+TGG - chr7_1:79161041-79161060 Msa1041600:exon 70.0%
!! CATGGGGGGAGCGCCATTGG+AGG + chr7_1:79161084-79161103 None:intergenic 70.0%
CTCCAATGGCGCTCCCCCCA+TGG - chr7_1:79161082-79161101 Msa1041600:five_prime_UTR 70.0%
!! GGGGGAGCGCCATTGGAGGC+TGG + chr7_1:79161080-79161099 None:intergenic 75.0%
!! GGGGGAGCGCCATTGGAGGC+TGG + chr7_1:79161080-79161099 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 79159010 79161247 79159010 ID=Msa1041600;Name=Msa1041600
chr7_1 mRNA 79159010 79161247 79159010 ID=Msa1041600-mRNA-1;Parent=Msa1041600;Name=Msa1041600-mRNA-1;_AED=0.18;_eAED=0.18;_QI=200|0.66|0.75|1|1|1|4|0|208
chr7_1 exon 79159010 79159317 79159010 ID=Msa1041600-mRNA-1:exon:21303;Parent=Msa1041600-mRNA-1
chr7_1 exon 79159657 79159924 79159657 ID=Msa1041600-mRNA-1:exon:21302;Parent=Msa1041600-mRNA-1
chr7_1 exon 79160911 79160953 79160911 ID=Msa1041600-mRNA-1:exon:21301;Parent=Msa1041600-mRNA-1
chr7_1 exon 79161040 79161247 79161040 ID=Msa1041600-mRNA-1:exon:21300;Parent=Msa1041600-mRNA-1
chr7_1 five_prime_UTR 79161048 79161247 79161048 ID=Msa1041600-mRNA-1:five_prime_utr;Parent=Msa1041600-mRNA-1
chr7_1 CDS 79161040 79161047 79161040 ID=Msa1041600-mRNA-1:cds;Parent=Msa1041600-mRNA-1
chr7_1 CDS 79160911 79160953 79160911 ID=Msa1041600-mRNA-1:cds;Parent=Msa1041600-mRNA-1
chr7_1 CDS 79159657 79159924 79159657 ID=Msa1041600-mRNA-1:cds;Parent=Msa1041600-mRNA-1
chr7_1 CDS 79159010 79159317 79159010 ID=Msa1041600-mRNA-1:cds;Parent=Msa1041600-mRNA-1
Gene Sequence

>Msa1041600

ATGCCTCGCTACTACTGTGACTACTGCGATACCTACTTGACCCACGATTCTGCAAATGTGAGGCAATACTACCTGCAATTTGAAGAGCAACAAACCCAAAGTTTAATTGATCAAAGGATTAAGGAACATCTCGGGCAAGCTGCAGCGTTTCAGCAAGTTGGTGTAGCTTTTAATCCCATGATGGCTCAAAGGCCTTCTATGCCCATCTTGCCACCACCAAGGTTGCCAATTCCTGGAAGTGTTCCAGGCTTTGGTGGACAACAACTATTCCCAGGGATGAGACCTATGATGATGCCTAGGCCAGGTCCTATTGCACCAGGAGGATATTATTCTGCACCTGGCATGCCACCAACTTTACCTCCACCTGGTGCTCCCTTAGTACCTGGTCAAACAAACACCCTTCCTAGGCCGCCGACACTACCTCCACCGCCGATGGTTCCTGGAAACACTGCAGCACCAGCCTCCAATGGCGCTCCCCCCATGGTTTCATCAGCAATGTATCCAGCCAATTCATCAGCATCGTCAACCGGAGGCTATGAAAGTTACAATGCCAACACACAACCACCATCAACCGGAGGCTATGAAAGTTACAATGCCAACACTCAACCACCTGAGGGAAATAACTAA

Protein sequence

>Msa1041600

MPRYYCDYCDTYLTHDSANVRQYYLQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAFNPMMAQRPSMPILPPPRLPIPGSVPGFGGQQLFPGMRPMMMPRPGPIAPGGYYSAPGMPPTLPPPGAPLVPGQTNTLPRPPTLPPPPMVPGNTAAPASNGAPPMVSSAMYPANSSASSTGGYESYNANTQPPSTGGYESYNANTQPPEGNN*