AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0965520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0965520 MtrunA17_Chr6g0486111 95.679 324 11 2 1 322 1 323 0.0 635
Msa0965520 MtrunA17_Chr8g0390301 61.299 354 82 16 1 319 1 334 4.89e-124 358
Msa0965520 MtrunA17_Chr2g0331431 48.837 344 122 12 14 319 1 328 1.66e-88 268
Msa0965520 MtrunA17_Chr2g0318971 43.353 173 72 2 146 318 288 434 1.31e-35 133
Msa0965520 MtrunA17_Chr2g0280631 44.311 167 64 4 156 321 276 414 2.99e-35 132
Msa0965520 MtrunA17_Chr3g0141841 40.933 193 75 4 142 318 283 452 1.95e-34 130
Msa0965520 MtrunA17_Chr1g0207771 50.345 145 57 3 171 315 141 270 5.46e-34 125
Msa0965520 MtrunA17_Chr8g0361501 42.331 163 68 2 156 318 305 441 2.18e-31 122
Msa0965520 MtrunA17_Chr1g0199091 42.857 161 63 4 165 322 399 533 4.89e-30 119
Msa0965520 MtrunA17_Chr4g0045561 37.158 183 79 3 132 314 4 150 2.63e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0965520 AT4G29100.1 46.472 411 127 16 1 322 1 407 2.40e-93 283
Msa0965520 AT4G29100.2 43.228 347 110 14 1 264 1 343 2.14e-62 202
Msa0965520 AT2G20100.1 60.947 169 56 2 159 317 190 358 4.49e-60 196
Msa0965520 AT2G20100.3 47.907 215 56 3 159 317 190 404 4.74e-51 174
Msa0965520 AT2G20100.4 62.385 109 38 1 159 264 190 298 9.12e-35 129
Msa0965520 AT2G20100.2 62.385 109 38 1 159 264 190 298 9.12e-35 129
Msa0965520 AT3G19500.1 47.973 148 49 3 171 318 140 259 7.32e-33 123
Msa0965520 AT1G61660.7 44.643 168 64 5 155 322 255 393 2.37e-32 124
Msa0965520 AT1G61660.1 44.643 168 64 5 155 322 255 393 2.37e-32 124
Msa0965520 AT1G61660.3 44.643 168 64 5 155 322 252 390 2.58e-32 124
Msa0965520 AT1G27660.1 52.985 134 30 4 171 299 318 423 5.37e-31 121
Msa0965520 AT3G20640.4 42.515 167 64 4 157 318 250 389 2.26e-30 119
Msa0965520 AT3G20640.1 42.515 167 64 4 157 318 312 451 4.15e-30 119
Msa0965520 AT2G31730.2 45.038 131 37 3 185 315 39 134 6.22e-27 103
Msa0965520 AT2G31730.1 45.038 131 37 3 185 315 39 134 6.22e-27 103
Msa0965520 AT1G05710.6 40.909 132 41 2 185 315 29 124 9.15e-25 97.8
Msa0965520 AT1G05710.11 40.909 132 41 2 185 315 37 132 1.11e-24 97.8
Msa0965520 AT1G05710.5 40.909 132 41 2 185 315 37 132 1.11e-24 97.8
Msa0965520 AT1G05710.1 40.909 132 41 2 185 315 37 132 1.11e-24 97.8
Msa0965520 AT1G05710.14 40.909 132 41 2 185 315 37 132 1.11e-24 97.8
Msa0965520 AT1G05710.3 40.909 132 41 2 185 315 37 132 1.11e-24 97.8
Msa0965520 AT1G05710.4 40.909 132 41 2 185 315 37 132 1.11e-24 97.8
Msa0965520 AT1G05710.12 40.909 132 41 2 185 315 37 132 1.11e-24 97.8
Msa0965520 AT1G05710.9 44.361 133 57 5 185 315 29 146 1.18e-24 98.2
Msa0965520 AT1G05710.8 44.361 133 57 5 185 315 29 146 1.18e-24 98.2
Msa0965520 AT1G05710.13 44.361 133 57 5 185 315 37 154 1.59e-24 98.2
Msa0965520 AT1G05710.2 44.361 133 57 5 185 315 37 154 1.59e-24 98.2
Msa0965520 AT1G05710.10 44.361 133 57 5 185 315 37 154 1.59e-24 98.2
Msa0965520 AT1G05710.7 44.361 133 57 5 185 315 37 154 1.59e-24 98.2
Msa0965520 AT4G21340.1 46.309 149 55 6 156 301 161 287 5.43e-24 100
Msa0965520 AT1G31050.1 41.250 160 56 5 171 322 305 434 8.20e-24 101
Msa0965520 AT1G31050.6 41.250 160 56 5 171 322 309 438 8.22e-24 101
Msa0965520 AT4G05170.2 33.761 234 116 8 64 297 76 270 2.77e-23 97.8
Msa0965520 AT4G05170.1 33.761 234 116 8 64 297 94 288 3.32e-23 98.2
Msa0965520 AT1G31050.7 41.401 157 54 5 171 319 305 431 6.29e-23 99.0
Msa0965520 AT4G05170.3 44.531 128 56 3 170 297 40 152 1.02e-22 93.6
Msa0965520 AT4G05170.5 44.531 128 56 3 170 297 133 245 2.50e-22 94.7
Msa0965520 AT4G05170.7 38.012 171 82 5 64 234 76 222 2.12e-21 91.7
Msa0965520 AT1G49830.1 42.623 122 41 2 195 316 134 226 5.91e-21 90.5
Msa0965520 AT1G49830.2 42.623 122 41 2 195 316 133 225 6.10e-21 90.5
Msa0965520 AT1G61660.6 55.682 88 34 1 155 242 255 337 1.15e-20 91.7
Msa0965520 AT1G61660.2 55.682 88 34 1 155 242 255 337 1.15e-20 91.7
Msa0965520 AT4G05170.6 38.182 165 78 5 64 228 76 216 2.53e-20 88.2
Msa0965520 AT4G05170.4 38.182 165 78 5 64 228 76 216 2.53e-20 88.2
Msa0965520 AT3G19500.2 61.765 68 26 0 171 238 140 207 5.03e-20 87.4
Msa0965520 AT3G20640.3 52.809 89 36 2 157 240 312 399 3.42e-19 87.8
Msa0965520 AT1G61660.4 34.132 167 74 6 156 322 241 371 6.05e-18 84.0
Msa0965520 AT3G20640.2 53.247 77 30 2 157 228 312 387 4.49e-15 75.9
Msa0965520 AT1G31050.5 53.030 66 30 1 166 230 304 369 9.44e-12 65.9
Msa0965520 AT1G31050.2 53.030 66 30 1 166 230 300 365 9.56e-12 65.9

Find 112 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAGTTGGTGCATAATT+AGG 0.122725 6_3:+92963254 None:intergenic
CCCCATTAATAATTTAAATT+TGG 0.201391 6_3:+92958676 None:intergenic
GACCAAATTTAAATTATTAA+TGG 0.219895 6_3:-92958678 Msa0965520:three_prime_UTR
TTATTGATGTTCCACCAATT+AGG 0.248969 6_3:+92963338 None:intergenic
ACCAAATTTAAATTATTAAT+GGG 0.263545 6_3:-92958677 Msa0965520:three_prime_UTR
TGGTTATATCAGATTCCTTC+AGG 0.271543 6_3:-92960621 Msa0965520:CDS
ATGACAATGGAGCTGATTAT+TGG 0.285895 6_3:-92958735 Msa0965520:CDS
CCTGATCCATTGCTCAAGTA+TGG 0.288564 6_3:+92960417 None:intergenic
CATCAGCTTGTTTCCCCATT+TGG 0.289480 6_3:-92961451 Msa0965520:CDS
ATTACCTGACCAGGGTCTTC+AGG 0.299545 6_3:+92959338 None:intergenic
TTACAGCTCCTAAATGAAAA+TGG 0.304202 6_3:-92959102 Msa0965520:intron
TGATGGCTAGTAACCCTAAT+TGG 0.323527 6_3:-92963352 Msa0965520:CDS
TATTGATGTTCCACCAATTA+GGG 0.326053 6_3:+92963339 None:intergenic
ATGAAGTTGGTGCATAATTA+GGG 0.328916 6_3:+92963255 None:intergenic
CTAGCCATCATTTGTTGAAC+TGG 0.334387 6_3:+92963365 None:intergenic
GACACAACCCTCTACTCTTT+AGG 0.346736 6_3:+92958791 None:intergenic
CAGGTTAGGAAGGAGAAGTT+AGG 0.364935 6_3:-92961493 Msa0965520:CDS
CATATAGGTAATTAAATTCA+TGG 0.368760 6_3:-92958595 Msa0965520:three_prime_UTR
CATATTGAGGTTGATTAAGT+AGG 0.370429 6_3:+92963556 None:intergenic
GAAAATAAAGGAGGAGGTTG+TGG 0.373125 6_3:+92963299 None:intergenic
TTAGAAGGAGATGAAAATAA+AGG 0.374150 6_3:+92963287 None:intergenic
TTGAACAACACCTCTATTCA+TGG 0.375089 6_3:+92963394 None:intergenic
TCTGTCTTGTTAGAAGCTAT+TGG 0.377963 6_3:-92960641 Msa0965520:CDS
ATATTGAGGTTGATTAAGTA+GGG 0.385136 6_3:+92963557 None:intergenic
ATTTAATTACCTTTCCAAAT+GGG 0.386503 6_3:+92961437 None:intergenic
AGTTGTTGACTCCATGGTTC+GGG 0.390425 6_3:+92963188 None:intergenic
ACTTGTAGTGTACATGATAC+TGG 0.401193 6_3:+92958763 None:intergenic
TTAGGGTTGAGAAAGTTAGA+AGG 0.407564 6_3:+92963272 None:intergenic
TGACAATGGAGCTGATTATT+GGG 0.408868 6_3:-92958734 Msa0965520:CDS
CCCTAGGAGGAGGAGGCTTT+CGG 0.409114 6_3:-92958705 Msa0965520:CDS
ATATCAACAAGAGAAGCATT+TGG 0.411147 6_3:+92962643 None:intergenic
TTTCTACAAAGACATTGTTT+AGG 0.411644 6_3:-92963522 Msa0965520:five_prime_UTR
TACAACTCAAACTACTTTCA+AGG 0.412851 6_3:-92961789 Msa0965520:intron
TAATTATTTAATTAGGTTCA+AGG 0.418794 6_3:-92959380 Msa0965520:intron
AATTTAATTACCTTTCCAAA+TGG 0.419801 6_3:+92961436 None:intergenic
GAGTTGTTGACTCCATGGTT+CGG 0.439817 6_3:+92963187 None:intergenic
AAAGGAAGAAAAGATGAAGT+TGG 0.451016 6_3:+92963242 None:intergenic
AAAGGAGGAGGTTGTGGAGA+TGG 0.454745 6_3:+92963305 None:intergenic
AAGAAAGTGAGAAAAGAGAA+AGG 0.455130 6_3:-92963485 Msa0965520:five_prime_UTR
CATTAGCAAAATATTTAAGA+TGG 0.455439 6_3:-92958387 Msa0965520:three_prime_UTR
TCAGGAAATAGCTATGCATA+TGG 0.457920 6_3:-92962607 Msa0965520:CDS
AAAAGTAAAGCAATAAAGAA+AGG 0.461557 6_3:-92963678 Msa0965520:five_prime_UTR
GCACCTGCCCTAGGAGGAGG+AGG 0.461982 6_3:-92958712 Msa0965520:CDS
TAGAGTTTGAATAATAATCA+TGG 0.466441 6_3:+92963615 None:intergenic
AAGTGTAACAGTTCTGCATC+TGG 0.468089 6_3:-92961845 Msa0965520:CDS
AAATACAAGGCAACCACATT+CGG 0.472873 6_3:-92960394 Msa0965520:intron
TTACCTGACCAGGGTCTTCA+GGG 0.475060 6_3:+92959339 None:intergenic
CTCTCCAGTTCAACAAATGA+TGG 0.475521 6_3:-92963369 Msa0965520:CDS
TTGAAGGGGTGGAATTGTGG+GGG 0.478021 6_3:-92962722 Msa0965520:intron
ACCGAAAGCCTCCTCCTCCT+AGG 0.478830 6_3:+92958704 None:intergenic
CCATACTTGAGCAATGGATC+AGG 0.481859 6_3:-92960417 Msa0965520:CDS
TTTAATTACCTTTCCAAATG+GGG 0.483813 6_3:+92961438 None:intergenic
GGTTATATCAGATTCCTTCA+GGG 0.485572 6_3:-92960620 Msa0965520:CDS
AAGAAGAACCTAAAGAGTAG+AGG 0.486812 6_3:-92958799 Msa0965520:CDS
ATTCCCTGAAGACCCTGGTC+AGG 0.501966 6_3:-92959342 Msa0965520:intron
TTTGTAATAAAATTCACAAA+GGG 0.503503 6_3:-92963434 Msa0965520:five_prime_UTR
TTCTCAATTTCAGGTTAGGA+AGG 0.504978 6_3:-92961503 Msa0965520:intron
GATTATTGGGCACCTGCCCT+AGG 0.505746 6_3:-92958721 Msa0965520:CDS
ATGGGGAAACAAGCTGATGA+AGG 0.508848 6_3:+92961455 None:intergenic
ATTCCTTCAGGGTCAAATTG+AGG 0.512155 6_3:-92960609 Msa0965520:intron
CAACACCTCTATTCATGGTA+TGG 0.512299 6_3:+92963399 None:intergenic
AGCTTACCATACTTGAGCAA+TGG 0.512974 6_3:-92960423 Msa0965520:CDS
GGAGCACCACACCCTTTGGT+TGG 0.517651 6_3:+92963580 None:intergenic
TGGGCACCTGCCCTAGGAGG+AGG 0.520166 6_3:-92958715 Msa0965520:CDS
ATATTAATTCTTACCGAATG+TGG 0.522777 6_3:+92960381 None:intergenic
GGAGATGAAAATAAAGGAGG+AGG 0.522950 6_3:+92963293 None:intergenic
ATAAGCCATACCATGAATAG+AGG 0.526941 6_3:-92963404 Msa0965520:exon
AGATAGTAAACAAAGACAAA+AGG 0.529273 6_3:-92963649 Msa0965520:five_prime_UTR
TATCATGTACACTACAAGTT+GGG 0.530955 6_3:-92958759 Msa0965520:CDS
ATATATTCTAGCATGCATAT+AGG 0.531269 6_3:-92958610 Msa0965520:three_prime_UTR
ATCCAAAGGATTACCTGACC+AGG 0.531475 6_3:+92959329 None:intergenic
AAGCCTCCTCCTCCTAGGGC+AGG 0.533559 6_3:+92958709 None:intergenic
GCATCATGAGCAATCAGCCT+TGG 0.535614 6_3:+92958528 None:intergenic
TACATGAGTTGTTGACTCCA+TGG 0.541593 6_3:+92963182 None:intergenic
AGAAGAACCTAAAGAGTAGA+GGG 0.543329 6_3:-92958798 Msa0965520:CDS
TTGCAAATACTAGTTCATCA+TGG 0.545751 6_3:+92958465 None:intergenic
CATGAGCAATCAGCCTTGGT+AGG 0.546191 6_3:+92958532 None:intergenic
CCGAAAGCCTCCTCCTCCTA+GGG 0.547448 6_3:+92958705 None:intergenic
TAGCAAAATATTTAAGATGG+TGG 0.548569 6_3:-92958384 Msa0965520:three_prime_UTR
AACTTTGAGAGGTCATATTG+AGG 0.549294 6_3:+92963543 None:intergenic
GAAGAGGAAAGCAGCTGAAG+AGG 0.551673 6_3:-92959076 Msa0965520:intron
GAAGGAGATGAAAATAAAGG+AGG 0.562051 6_3:+92963290 None:intergenic
GCTTGTTTCCCCATTTGGAA+AGG 0.570374 6_3:-92961446 Msa0965520:intron
AAGTTTCAATAACAACATGT+TGG 0.571684 6_3:-92962551 Msa0965520:CDS
ATCAAGAGCTTCCCGAACCA+TGG 0.573656 6_3:-92963199 Msa0965520:CDS
CCAAATTTAAATTATTAATG+GGG 0.575170 6_3:-92958676 Msa0965520:three_prime_UTR
TGTTTATTCCCTGAAGACCC+TGG 0.579599 6_3:-92959347 Msa0965520:CDS
TTTGAAGGGGTGGAATTGTG+GGG 0.579731 6_3:-92962723 Msa0965520:intron
TAAATGAAAATGGCTTGAAG+AGG 0.592480 6_3:-92959092 Msa0965520:CDS
TGGCTAGTAACCCTAATTGG+TGG 0.593806 6_3:-92963349 Msa0965520:CDS
GGAGGAGGTTGTGGAGATGG+TGG 0.593961 6_3:+92963308 None:intergenic
GTATCATGTACACTACAAGT+TGG 0.599973 6_3:-92958760 Msa0965520:CDS
TATTGAGGTTGATTAAGTAG+GGG 0.601230 6_3:+92963558 None:intergenic
TCACCTCAATTTGACCCTGA+AGG 0.601592 6_3:+92960606 None:intergenic
GATATTAAACAAGAAAACTC+AGG 0.604123 6_3:-92962625 Msa0965520:CDS
ATAAGTCCAACCAAAGGGTG+TGG 0.604349 6_3:-92963586 Msa0965520:five_prime_UTR
ATTGAGGTTGATTAAGTAGG+GGG 0.607577 6_3:+92963559 None:intergenic
TGGGGAAACAAGCTGATGAA+GGG 0.608733 6_3:+92961456 None:intergenic
TGTAACAGTTCTGCATCTGG+TGG 0.617351 6_3:-92961842 Msa0965520:CDS
TATTGGGCACCTGCCCTAGG+AGG 0.619502 6_3:-92958718 Msa0965520:CDS
AATAGCTATGCATATGGACA+TGG 0.627229 6_3:-92962601 Msa0965520:CDS
ACCTCAGAAGATCGATCTAG+TGG 0.628411 6_3:+92962487 None:intergenic
CTACAAGTTGGGAATGACAA+TGG 0.634609 6_3:-92958748 Msa0965520:CDS
ACCACTAGATCGATCTTCTG+AGG 0.634967 6_3:-92962488 Msa0965520:intron
GTAACAGTTCTGCATCTGGT+GGG 0.644719 6_3:-92961841 Msa0965520:CDS
GTCTTTGTAGAAACTTTGAG+AGG 0.647479 6_3:+92963532 None:intergenic
TCAGAAGATCGATCTAGTGG+TGG 0.660060 6_3:+92962490 None:intergenic
TCCAAAGGATTACCTGACCA+GGG 0.669498 6_3:+92959330 None:intergenic
ACAATAGTAATATAGATGTG+AGG 0.676915 6_3:-92962516 Msa0965520:CDS
GGTGGAACATCAATAACATG+AGG 0.683914 6_3:-92963331 Msa0965520:CDS
GCAATGGATCAGGAAATACA+AGG 0.690176 6_3:-92960407 Msa0965520:CDS
AATAGCTTCTAACAAGACAG+AGG 0.708748 6_3:+92960643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATCACTATTTTTTTTTTA+AGG - chr6_3:92958880-92958899 Msa0965520:intron 10.0%
!!! AATCACTATTTTTTTTTTAA+GGG - chr6_3:92958881-92958900 Msa0965520:intron 10.0%
!!! AAAATCTAATTAATTGTTTT+TGG - chr6_3:92959270-92959289 Msa0965520:intron 10.0%
!! ATTGCATATATAATTTATAT+TGG + chr6_3:92959796-92959815 None:intergenic 10.0%
!!! TATGATTTTAAACTAAAAAA+AGG + chr6_3:92959841-92959860 None:intergenic 10.0%
!!! TTTTTTAGTTTAAAATCATA+AGG - chr6_3:92959841-92959860 Msa0965520:intron 10.0%
!!! TTTTTAGTTTAAAATCATAA+GGG - chr6_3:92959842-92959861 Msa0965520:intron 10.0%
!!! GTAAATTACTTTATTATTTT+TGG - chr6_3:92960100-92960119 Msa0965520:intron 10.0%
!! AATTTCTTATTAAATAAACT+AGG + chr6_3:92960613-92960632 None:intergenic 10.0%
!!! TTATATGTTTTTTAATAGAA+AGG - chr6_3:92960635-92960654 Msa0965520:CDS 10.0%
!!! TTTTTTTTTTTTGATGAAAT+TGG + chr6_3:92961766-92961785 None:intergenic 10.0%
!! ATTTATAAAAAAGAATTAGA+GGG + chr6_3:92962084-92962103 None:intergenic 10.0%
!! ATGATTGTAATTATTTAATT+AGG - chr6_3:92962634-92962653 Msa0965520:CDS 10.0%
!! ATATATGAATAATAAAAACA+AGG - chr6_3:92962801-92962820 Msa0965520:intron 10.0%
!! TATATGAATAATAAAAACAA+GGG - chr6_3:92962802-92962821 Msa0965520:intron 10.0%
!! ACCAAATTTAAATTATTAAT+GGG - chr6_3:92963344-92963363 Msa0965520:CDS 10.0%
!!! TTTTGTAATAAAATTCACAA+AGG - chr6_3:92958586-92958605 Msa0965520:three_prime_UTR 15.0%
!! TTTGTAATAAAATTCACAAA+GGG - chr6_3:92958587-92958606 Msa0965520:three_prime_UTR 15.0%
!! TTAATTAAAGGTGATAATAT+TGG + chr6_3:92959711-92959730 None:intergenic 15.0%
!! ATTATCACCTTTAATTAATT+TGG - chr6_3:92959713-92959732 Msa0965520:intron 15.0%
!!! TTTTAAACTAAAAAAAGGTT+GGG + chr6_3:92959836-92959855 None:intergenic 15.0%
!!! ATTTTAAACTAAAAAAAGGT+TGG + chr6_3:92959837-92959856 None:intergenic 15.0%
!!! TTTTAGTTTAAAATCATAAG+GGG - chr6_3:92959843-92959862 Msa0965520:intron 15.0%
!! TTTCATTTAATAATTGAACT+TGG + chr6_3:92961831-92961850 None:intergenic 15.0%
!! CATTTATAAAAAAGAATTAG+AGG + chr6_3:92962085-92962104 None:intergenic 15.0%
!! TAATTATTTAATTAGGTTCA+AGG - chr6_3:92962641-92962660 Msa0965520:CDS 15.0%
!! ATATGAATAATAAAAACAAG+GGG - chr6_3:92962803-92962822 Msa0965520:intron 15.0%
!!! AATCAAAGACAATAATTTTT+TGG + chr6_3:92963080-92963099 None:intergenic 15.0%
!! GACCAAATTTAAATTATTAA+TGG - chr6_3:92963343-92963362 Msa0965520:CDS 15.0%
!! CCAAATTTAAATTATTAATG+GGG - chr6_3:92963345-92963364 Msa0965520:CDS 15.0%
!! AAAAGTAAAGCAATAAAGAA+AGG - chr6_3:92958343-92958362 Msa0965520:three_prime_UTR 20.0%
!! TAGAGTTTGAATAATAATCA+TGG + chr6_3:92958409-92958428 None:intergenic 20.0%
!! AATCACTACTAAATTAGTAA+GGG - chr6_3:92958909-92958928 Msa0965520:intron 20.0%
!! ATGTATAATATTCACCATAA+TGG + chr6_3:92959098-92959117 None:intergenic 20.0%
!!! TTAGCATTTGATTTTGAAAT+TGG + chr6_3:92959347-92959366 None:intergenic 20.0%
!! ATTATATATGCAATCTCAAA+AGG - chr6_3:92959802-92959821 Msa0965520:intron 20.0%
!! ACATTAGTTCATATGAAATA+TGG - chr6_3:92960061-92960080 Msa0965520:intron 20.0%
!!! TTGTAGAATGAAAGAAATTT+TGG + chr6_3:92960158-92960177 None:intergenic 20.0%
!!! CTATATTTTGTTGTTGTATT+AGG + chr6_3:92960449-92960468 None:intergenic 20.0%
!! ATTTAATTACCTTTCCAAAT+GGG + chr6_3:92960587-92960606 None:intergenic 20.0%
!! AATTTAATTACCTTTCCAAA+TGG + chr6_3:92960588-92960607 None:intergenic 20.0%
!!! TTTTTTTTTGTTCCCTATTT+TGG + chr6_3:92960726-92960745 None:intergenic 20.0%
!!! AATTTTTTCTCTAATAGTGA+TGG + chr6_3:92960863-92960882 None:intergenic 20.0%
!! TGTAGTAGCAAATAAATTAA+AGG + chr6_3:92961102-92961121 None:intergenic 20.0%
!! ATTGCATTATATATAGAAAG+TGG - chr6_3:92961301-92961320 Msa0965520:intron 20.0%
!! GAATCAAAGAATTGAATAAT+TGG + chr6_3:92961967-92961986 None:intergenic 20.0%
!!! TTATTTTTGATATATTGTCG+AGG + chr6_3:92962226-92962245 None:intergenic 20.0%
!!! AATAATGCTTATTTTTACGA+AGG + chr6_3:92962459-92962478 None:intergenic 20.0%
!! AAATGTTATGGATAATTATG+TGG - chr6_3:92962598-92962617 Msa0965520:CDS 20.0%
!! ACATTTCTCTTTAGTTATAA+TGG + chr6_3:92962718-92962737 None:intergenic 20.0%
!! TATATTAAATCTGATAAAGC+TGG + chr6_3:92962743-92962762 None:intergenic 20.0%
!!! TTTTGGTCTCTAATTTTTAT+TGG + chr6_3:92963063-92963082 None:intergenic 20.0%
!! CCCCATTAATAATTTAAATT+TGG + chr6_3:92963348-92963367 None:intergenic 20.0%
!! CATATAGGTAATTAAATTCA+TGG - chr6_3:92963426-92963445 Msa0965520:five_prime_UTR 20.0%
!!! AAAAAGTAGATTGGTAATTA+GGG + chr6_3:92963583-92963602 None:intergenic 20.0%
!!! AAAAAAGTAGATTGGTAATT+AGG + chr6_3:92963584-92963603 None:intergenic 20.0%
!! TTCACATTAAAAAAGTAGAT+TGG + chr6_3:92963592-92963611 None:intergenic 20.0%
!! CATTAGCAAAATATTTAAGA+TGG - chr6_3:92963634-92963653 Msa0965520:five_prime_UTR 20.0%
! AGATAGTAAACAAAGACAAA+AGG - chr6_3:92958372-92958391 Msa0965520:three_prime_UTR 25.0%
!! ATATTGAGGTTGATTAAGTA+GGG + chr6_3:92958467-92958486 None:intergenic 25.0%
! TTTCTACAAAGACATTGTTT+AGG - chr6_3:92958499-92958518 Msa0965520:three_prime_UTR 25.0%
! TTAGAAGGAGATGAAAATAA+AGG + chr6_3:92958737-92958756 None:intergenic 25.0%
! CAATCACTACTAAATTAGTA+AGG - chr6_3:92958908-92958927 Msa0965520:intron 25.0%
! ATCACTACTAAATTAGTAAG+GGG - chr6_3:92958910-92958929 Msa0965520:intron 25.0%
! AAAATTCAAACGTATGTGTT+TGG - chr6_3:92959231-92959250 Msa0965520:intron 25.0%
!!! TTGTTTTTGGCTAATTTTGA+AGG - chr6_3:92959283-92959302 Msa0965520:intron 25.0%
!!! TGTTTTTGGCTAATTTTGAA+GGG - chr6_3:92959284-92959303 Msa0965520:intron 25.0%
! GATATTAAACAAGAAAACTC+AGG - chr6_3:92959396-92959415 Msa0965520:intron 25.0%
! AAGTTTCAATAACAACATGT+TGG - chr6_3:92959470-92959489 Msa0965520:intron 25.0%
! ACAATAGTAATATAGATGTG+AGG - chr6_3:92959505-92959524 Msa0965520:intron 25.0%
! ACTTCTTCATTAAGAATCTA+TGG - chr6_3:92959604-92959623 Msa0965520:intron 25.0%
!!! ATTCATGTACCTTTTTTTCT+TGG - chr6_3:92959642-92959661 Msa0965520:intron 25.0%
!! TCAAATTTTTCATAGCAACA+CGG - chr6_3:92960005-92960024 Msa0965520:intron 25.0%
! GAATAATTGCAATTGAGAAT+TGG + chr6_3:92960364-92960383 None:intergenic 25.0%
! TTTAATTACCTTTCCAAATG+GGG + chr6_3:92960586-92960605 None:intergenic 25.0%
!!! TTTTCTGCATGATATTTTAG+AGG - chr6_3:92961256-92961275 Msa0965520:intron 25.0%
!!! TTTCTGCATGATATTTTAGA+GGG - chr6_3:92961257-92961276 Msa0965520:intron 25.0%
! AAATTAAGGCAAATGTGAAA+TGG + chr6_3:92961504-92961523 None:intergenic 25.0%
! AACTTGAAGAACACAAATTA+AGG + chr6_3:92961518-92961537 None:intergenic 25.0%
! AATTCCAAAGTTAGGAAAAA+AGG + chr6_3:92961566-92961585 None:intergenic 25.0%
! ATATTAATTCTTACCGAATG+TGG + chr6_3:92961643-92961662 None:intergenic 25.0%
! ACATTCGGTAAGAATTAATA+TGG - chr6_3:92961642-92961661 Msa0965520:intron 25.0%
!! AGAACTATGACAATTTTTGT+GGG + chr6_3:92961689-92961708 None:intergenic 25.0%
!! AAGAACTATGACAATTTTTG+TGG + chr6_3:92961690-92961709 None:intergenic 25.0%
! AATGAATAATTGAACTCAAG+TGG - chr6_3:92961736-92961755 Msa0965520:intron 25.0%
! CATTAAATGACAACTCATTT+AGG - chr6_3:92961800-92961819 Msa0965520:CDS 25.0%
! ATACTTATATTGTTCATCAG+AGG - chr6_3:92962030-92962049 Msa0965520:intron 25.0%
! TACTTATATTGTTCATCAGA+GGG - chr6_3:92962031-92962050 Msa0965520:intron 25.0%
! AAAGATAAGTGCCAAATATT+AGG - chr6_3:92962289-92962308 Msa0965520:intron 25.0%
!!! AAAAATGTAGTTTGTTCCTT+TGG - chr6_3:92962369-92962388 Msa0965520:intron 25.0%
! ACATGTTGTGTTAAAATCAA+GGG - chr6_3:92962400-92962419 Msa0965520:intron 25.0%
!!! TTTAGTTATAATGGATCCAA+AGG + chr6_3:92962709-92962728 None:intergenic 25.0%
!!! TCTTATGTGTTTTTTCATGT+TGG - chr6_3:92963167-92963186 Msa0965520:intron 25.0%
! ATATATTCTAGCATGCATAT+AGG - chr6_3:92963411-92963430 Msa0965520:exon 25.0%
!! TAGCAAAATATTTAAGATGG+TGG - chr6_3:92963637-92963656 Msa0965520:five_prime_UTR 25.0%
TCAAAAATAAGTCCAACCAA+AGG - chr6_3:92958429-92958448 Msa0965520:intron 30.0%
CAAAAATAAGTCCAACCAAA+GGG - chr6_3:92958430-92958449 Msa0965520:intron 30.0%
! TATTGAGGTTGATTAAGTAG+GGG + chr6_3:92958466-92958485 None:intergenic 30.0%
! CATATTGAGGTTGATTAAGT+AGG + chr6_3:92958468-92958487 None:intergenic 30.0%
AAGAAAGTGAGAAAAGAGAA+AGG - chr6_3:92958536-92958555 Msa0965520:three_prime_UTR 30.0%
TATTGATGTTCCACCAATTA+GGG + chr6_3:92958685-92958704 None:intergenic 30.0%
TTATTGATGTTCCACCAATT+AGG + chr6_3:92958686-92958705 None:intergenic 30.0%
!! ATGAAGTTGGTGCATAATTA+GGG + chr6_3:92958769-92958788 None:intergenic 30.0%
AAAGGAAGAAAAGATGAAGT+TGG + chr6_3:92958782-92958801 None:intergenic 30.0%
! CTTTTCTTCCTTTTTCTTCA+TGG - chr6_3:92958789-92958808 Msa0965520:CDS 30.0%
! TTTTCATGCCATGAAGAAAA+AGG + chr6_3:92958800-92958819 None:intergenic 30.0%
TTAGTGACAAGAGATTTAGA+GGG - chr6_3:92958993-92959012 Msa0965520:intron 30.0%
! GACTTGTTCTATAACCATTA+TGG - chr6_3:92959081-92959100 Msa0965520:CDS 30.0%
ACGTATGTGTTTGGTTAATT+AGG - chr6_3:92959240-92959259 Msa0965520:intron 30.0%
ATGTGTTTGGTTAATTAGGA+AGG - chr6_3:92959244-92959263 Msa0965520:intron 30.0%
!!! GTTTTTGGCTAATTTTGAAG+GGG - chr6_3:92959285-92959304 Msa0965520:intron 30.0%
!! ATATCAACAAGAGAAGCATT+TGG + chr6_3:92959381-92959400 None:intergenic 30.0%
ACTCATTGACCAAGAAAAAA+AGG + chr6_3:92959654-92959673 None:intergenic 30.0%
GTAAAGTTTCTTGAAAAGTG+AGG + chr6_3:92959689-92959708 None:intergenic 30.0%
CTCTTGGCCAAATTAATTAA+AGG + chr6_3:92959723-92959742 None:intergenic 30.0%
TTCTTCATGTATCAAAAGCT+TGG - chr6_3:92959905-92959924 Msa0965520:intron 30.0%
TACAACTCAAACTACTTTCA+AGG - chr6_3:92960232-92960251 Msa0965520:intron 30.0%
ACAAACATACAAATACCATG+TGG - chr6_3:92960310-92960329 Msa0965520:intron 30.0%
CAAACATACAAATACCATGT+GGG - chr6_3:92960311-92960330 Msa0965520:intron 30.0%
AAACATACAAATACCATGTG+GGG - chr6_3:92960312-92960331 Msa0965520:intron 30.0%
AAGATATCATGAAAACGTGT+AGG + chr6_3:92960497-92960516 None:intergenic 30.0%
GATATCTTGTTCTCAATTTC+AGG - chr6_3:92960509-92960528 Msa0965520:intron 30.0%
!! TTCCCTATTTTGGATTTAGT+GGG + chr6_3:92960716-92960735 None:intergenic 30.0%
AATTAAAGGATCGTGTTAAC+AGG + chr6_3:92961088-92961107 None:intergenic 30.0%
! TTTATTTGCTACTACATTCG+AGG - chr6_3:92961106-92961125 Msa0965520:intron 30.0%
!! TTCTGCATGATATTTTAGAG+GGG - chr6_3:92961258-92961277 Msa0965520:intron 30.0%
ATATATAGAAAGTGGTGACT+AGG - chr6_3:92961309-92961328 Msa0965520:intron 30.0%
!!! TCATCCTTTTTTCCTAACTT+TGG - chr6_3:92961559-92961578 Msa0965520:intron 30.0%
! GAACTATGACAATTTTTGTG+GGG + chr6_3:92961688-92961707 None:intergenic 30.0%
TAAGTAAAGTCAATCGAAAC+TGG + chr6_3:92961854-92961873 None:intergenic 30.0%
ACTTTAGATTACCAGAAAAC+TGG - chr6_3:92961886-92961905 Msa0965520:intron 30.0%
! GTGTTAATATTCCAGTTTTC+TGG + chr6_3:92961900-92961919 None:intergenic 30.0%
TATATTGTCGAGGATATTAG+AGG + chr6_3:92962216-92962235 None:intergenic 30.0%
TAAGTGCCAAATATTAGGAA+AGG - chr6_3:92962294-92962313 Msa0965520:intron 30.0%
CACATGTTGTGTTAAAATCA+AGG - chr6_3:92962399-92962418 Msa0965520:intron 30.0%
CATGTTGTGTTAAAATCAAG+GGG - chr6_3:92962401-92962420 Msa0965520:intron 30.0%
AATTGTTTCGTGTGTTTCTT+TGG - chr6_3:92962428-92962447 Msa0965520:intron 30.0%
!!! TGCTTATTTTTACGAAGGTA+TGG + chr6_3:92962454-92962473 None:intergenic 30.0%
TTGCATGTGCAAAAATGTTA+TGG - chr6_3:92962586-92962605 Msa0965520:CDS 30.0%
TTACAGCTCCTAAATGAAAA+TGG - chr6_3:92962919-92962938 Msa0965520:intron 30.0%
!! TCTTCAAGCCATTTTCATTT+AGG + chr6_3:92962930-92962949 None:intergenic 30.0%
TAAATGAAAATGGCTTGAAG+AGG - chr6_3:92962929-92962948 Msa0965520:intron 30.0%
!! CATGTTGGTGATAACTAATT+AGG - chr6_3:92963182-92963201 Msa0965520:intron 30.0%
TATCATGTACACTACAAGTT+GGG - chr6_3:92963262-92963281 Msa0965520:CDS 30.0%
! ATCTAGCACACATTTTATTC+AGG + chr6_3:92963533-92963552 None:intergenic 30.0%
TTGCAAATACTAGTTCATCA+TGG + chr6_3:92963559-92963578 None:intergenic 30.0%
! ATTGAGGTTGATTAAGTAGG+GGG + chr6_3:92958465-92958484 None:intergenic 35.0%
! AACTTTGAGAGGTCATATTG+AGG + chr6_3:92958481-92958500 None:intergenic 35.0%
GTCTTTGTAGAAACTTTGAG+AGG + chr6_3:92958492-92958511 None:intergenic 35.0%
ATAAGCCATACCATGAATAG+AGG - chr6_3:92958617-92958636 Msa0965520:three_prime_UTR 35.0%
TTGAACAACACCTCTATTCA+TGG + chr6_3:92958630-92958649 None:intergenic 35.0%
GAAGGAGATGAAAATAAAGG+AGG + chr6_3:92958734-92958753 None:intergenic 35.0%
TTAGGGTTGAGAAAGTTAGA+AGG + chr6_3:92958752-92958771 None:intergenic 35.0%
!! GATGAAGTTGGTGCATAATT+AGG + chr6_3:92958770-92958789 None:intergenic 35.0%
GTTAGTGACAAGAGATTTAG+AGG - chr6_3:92958992-92959011 Msa0965520:intron 35.0%
TAGTGACAAGAGATTTAGAG+GGG - chr6_3:92958994-92959013 Msa0965520:intron 35.0%
TCAGGAAATAGCTATGCATA+TGG - chr6_3:92959414-92959433 Msa0965520:intron 35.0%
AATAGCTATGCATATGGACA+TGG - chr6_3:92959420-92959439 Msa0965520:intron 35.0%
!! AACATGGAAGCTTTTTCTCT+TGG + chr6_3:92959739-92959758 None:intergenic 35.0%
TGGGACAATGAAAAAAGCTA+GGG - chr6_3:92960199-92960218 Msa0965520:intron 35.0%
AGGTATAATGCAAACTTCCA+TGG - chr6_3:92960252-92960271 Msa0965520:intron 35.0%
ATGAAAGAGAGTTAAGGAGT+TGG + chr6_3:92960286-92960305 None:intergenic 35.0%
GTATGCATGAAAGAGAGTTA+AGG + chr6_3:92960292-92960311 None:intergenic 35.0%
GGAGTAACTATTGTCTTTCT+TGG - chr6_3:92960333-92960352 Msa0965520:intron 35.0%
AAGTGCACATGCTATAAAGT+TGG + chr6_3:92960472-92960491 None:intergenic 35.0%
!! CTTGTTCTCAATTTCAGGTT+AGG - chr6_3:92960514-92960533 Msa0965520:intron 35.0%
!! TTCTCAATTTCAGGTTAGGA+AGG - chr6_3:92960518-92960537 Msa0965520:intron 35.0%
ATCCCCACTAAATCCAAAAT+AGG - chr6_3:92960710-92960729 Msa0965520:intron 35.0%
TCCCCACTAAATCCAAAATA+GGG - chr6_3:92960711-92960730 Msa0965520:intron 35.0%
!! TCCCTATTTTGGATTTAGTG+GGG + chr6_3:92960715-92960734 None:intergenic 35.0%
!! GTTCCCTATTTTGGATTTAG+TGG + chr6_3:92960717-92960736 None:intergenic 35.0%
TTACTAGTGCTTACTGCTTA+GGG + chr6_3:92960829-92960848 None:intergenic 35.0%
TTTACTAGTGCTTACTGCTT+AGG + chr6_3:92960830-92960849 None:intergenic 35.0%
AAAATGATATCGAGTGCTCT+TGG - chr6_3:92960930-92960949 Msa0965520:intron 35.0%
AAATGATATCGAGTGCTCTT+GGG - chr6_3:92960931-92960950 Msa0965520:intron 35.0%
!! TCTGCATGATATTTTAGAGG+GGG - chr6_3:92961259-92961278 Msa0965520:intron 35.0%
!! ATATTTTAGAGGGGGGAAAA+AGG - chr6_3:92961267-92961286 Msa0965520:intron 35.0%
AATAGCTTCTAACAAGACAG+AGG + chr6_3:92961381-92961400 None:intergenic 35.0%
! TCTGTCTTGTTAGAAGCTAT+TGG - chr6_3:92961380-92961399 Msa0965520:intron 35.0%
TGGTTATATCAGATTCCTTC+AGG - chr6_3:92961400-92961419 Msa0965520:intron 35.0%
GGTTATATCAGATTCCTTCA+GGG - chr6_3:92961401-92961420 Msa0965520:intron 35.0%
TGCTTGTGTTATGGTTGTTT+GGG + chr6_3:92961468-92961487 None:intergenic 35.0%
!! TCCTAACTTTGGAATTATGC+AGG - chr6_3:92961570-92961589 Msa0965520:intron 35.0%
AAATACAAGGCAACCACATT+CGG - chr6_3:92961627-92961646 Msa0965520:intron 35.0%
!! ATTTTTGTGGGGTAAGTTGA+GGG + chr6_3:92961677-92961696 None:intergenic 35.0%
! AATTTTTGTGGGGTAAGTTG+AGG + chr6_3:92961678-92961697 None:intergenic 35.0%
! TGTTCATCAGAGGGTATAAA+TGG - chr6_3:92962040-92962059 Msa0965520:intron 35.0%
ATCCTTAAAGCTAAAAGCTC+AGG - chr6_3:92962159-92962178 Msa0965520:intron 35.0%
TCCTTAAAGCTAAAAGCTCA+GGG - chr6_3:92962160-92962179 Msa0965520:intron 35.0%
GGAGTTCCTTTCCTAATATT+TGG + chr6_3:92962303-92962322 None:intergenic 35.0%
AAGAAGAACCTAAAGAGTAG+AGG - chr6_3:92963222-92963241 Msa0965520:CDS 35.0%
AGAAGAACCTAAAGAGTAGA+GGG - chr6_3:92963223-92963242 Msa0965520:CDS 35.0%
ACTTGTAGTGTACATGATAC+TGG + chr6_3:92963261-92963280 None:intergenic 35.0%
GTATCATGTACACTACAAGT+TGG - chr6_3:92963261-92963280 Msa0965520:CDS 35.0%
ATGACAATGGAGCTGATTAT+TGG - chr6_3:92963286-92963305 Msa0965520:CDS 35.0%
TGACAATGGAGCTGATTATT+GGG - chr6_3:92963287-92963306 Msa0965520:CDS 35.0%
CAACACCTCTATTCATGGTA+TGG + chr6_3:92958625-92958644 None:intergenic 40.0%
CTCTCCAGTTCAACAAATGA+TGG - chr6_3:92958652-92958671 Msa0965520:three_prime_UTR 40.0%
! CTAGCCATCATTTGTTGAAC+TGG + chr6_3:92958659-92958678 None:intergenic 40.0%
TGATGGCTAGTAACCCTAAT+TGG - chr6_3:92958669-92958688 Msa0965520:three_prime_UTR 40.0%
GGTGGAACATCAATAACATG+AGG - chr6_3:92958690-92958709 Msa0965520:exon 40.0%
GAAAATAAAGGAGGAGGTTG+TGG + chr6_3:92958725-92958744 None:intergenic 40.0%
GGAGATGAAAATAAAGGAGG+AGG + chr6_3:92958731-92958750 None:intergenic 40.0%
!! TACATGAGTTGTTGACTCCA+TGG + chr6_3:92958842-92958861 None:intergenic 40.0%
TTGCAGCAAAATGGAGTAGT+GGG + chr6_3:92959149-92959168 None:intergenic 40.0%
ATTGCAGCAAAATGGAGTAG+TGG + chr6_3:92959150-92959169 None:intergenic 40.0%
!! TTTGGCTAATTTTGAAGGGG+TGG - chr6_3:92959288-92959307 Msa0965520:intron 40.0%
!! ATTTTGAAGGGGTGGAATTG+TGG - chr6_3:92959296-92959315 Msa0965520:intron 40.0%
!! TTTTGAAGGGGTGGAATTGT+GGG - chr6_3:92959297-92959316 Msa0965520:intron 40.0%
AAGTGTAACAGTTCTGCATC+TGG - chr6_3:92960176-92960195 Msa0965520:intron 40.0%
GTGGGACAATGAAAAAAGCT+AGG - chr6_3:92960198-92960217 Msa0965520:intron 40.0%
AATGATATCGAGTGCTCTTG+GGG - chr6_3:92960932-92960951 Msa0965520:intron 40.0%
!! CTGCATGATATTTTAGAGGG+GGG - chr6_3:92961260-92961279 Msa0965520:intron 40.0%
CTAGGAATATGACAGTGGTA+TGG - chr6_3:92961327-92961346 Msa0965520:intron 40.0%
ATTCCTTCAGGGTCAAATTG+AGG - chr6_3:92961412-92961431 Msa0965520:intron 40.0%
GTGCTTGTGTTATGGTTGTT+TGG + chr6_3:92961469-92961488 None:intergenic 40.0%
TTAACAGCGTGCTTGTGTTA+TGG + chr6_3:92961477-92961496 None:intergenic 40.0%
GCCTGCATAATTCCAAAGTT+AGG + chr6_3:92961574-92961593 None:intergenic 40.0%
AGCTTACCATACTTGAGCAA+TGG - chr6_3:92961598-92961617 Msa0965520:intron 40.0%
GCAATGGATCAGGAAATACA+AGG - chr6_3:92961614-92961633 Msa0965520:intron 40.0%
!!! ACCCTGAGCTTTTAGCTTTA+AGG + chr6_3:92962164-92962183 None:intergenic 40.0%
TCCACATGAATGCAAGAATG+TGG - chr6_3:92962320-92962339 Msa0965520:intron 40.0%
TCCACATTCTTGCATTCATG+TGG + chr6_3:92962324-92962343 None:intergenic 40.0%
CAACATGTGATTTCTGCCAA+AGG + chr6_3:92962388-92962407 None:intergenic 40.0%
! CTACAAGTTGGGAATGACAA+TGG - chr6_3:92963273-92963292 Msa0965520:CDS 40.0%
ATCTGCTCAAAAACCTACCA+AGG - chr6_3:92963476-92963495 Msa0965520:five_prime_UTR 40.0%
ATAAGTCCAACCAAAGGGTG+TGG - chr6_3:92958435-92958454 Msa0965520:intron 45.0%
TGGCTAGTAACCCTAATTGG+TGG - chr6_3:92958672-92958691 Msa0965520:three_prime_UTR 45.0%
!! AGTTGTTGACTCCATGGTTC+GGG + chr6_3:92958836-92958855 None:intergenic 45.0%
!! GAGTTGTTGACTCCATGGTT+CGG + chr6_3:92958837-92958856 None:intergenic 45.0%
CCAGCTCAATTGCAGCAAAA+TGG + chr6_3:92959158-92959177 None:intergenic 45.0%
! CCATTTTGCTGCAATTGAGC+TGG - chr6_3:92959155-92959174 Msa0965520:intron 45.0%
TTTGAAGGGGTGGAATTGTG+GGG - chr6_3:92959298-92959317 Msa0965520:intron 45.0%
TCAGAAGATCGATCTAGTGG+TGG + chr6_3:92959534-92959553 None:intergenic 45.0%
ACCACTAGATCGATCTTCTG+AGG - chr6_3:92959533-92959552 Msa0965520:intron 45.0%
ACCTCAGAAGATCGATCTAG+TGG + chr6_3:92959537-92959556 None:intergenic 45.0%
TGTAACAGTTCTGCATCTGG+TGG - chr6_3:92960179-92960198 Msa0965520:intron 45.0%
GTAACAGTTCTGCATCTGGT+GGG - chr6_3:92960180-92960199 Msa0965520:intron 45.0%
AGGAGTTGGAAGTTTCTCCA+TGG + chr6_3:92960272-92960291 None:intergenic 45.0%
GACAATAGTTACTCCCCACA+TGG + chr6_3:92960328-92960347 None:intergenic 45.0%
CAGGTTAGGAAGGAGAAGTT+AGG - chr6_3:92960528-92960547 Msa0965520:intron 45.0%
TGGGGAAACAAGCTGATGAA+GGG + chr6_3:92960568-92960587 None:intergenic 45.0%
ATGGGGAAACAAGCTGATGA+AGG + chr6_3:92960569-92960588 None:intergenic 45.0%
! CATCAGCTTGTTTCCCCATT+TGG - chr6_3:92960570-92960589 Msa0965520:intron 45.0%
GCTTGTTTCCCCATTTGGAA+AGG - chr6_3:92960575-92960594 Msa0965520:intron 45.0%
!! TGCTCTTGGGGCACTTTTTA+AGG - chr6_3:92960944-92960963 Msa0965520:intron 45.0%
!! GCTCTTGGGGCACTTTTTAA+GGG - chr6_3:92960945-92960964 Msa0965520:intron 45.0%
GGTGACTAGGAATATGACAG+TGG - chr6_3:92961322-92961341 Msa0965520:intron 45.0%
TCACCTCAATTTGACCCTGA+AGG + chr6_3:92961418-92961437 None:intergenic 45.0%
CCTGATCCATTGCTCAAGTA+TGG + chr6_3:92961607-92961626 None:intergenic 45.0%
CCATACTTGAGCAATGGATC+AGG - chr6_3:92961604-92961623 Msa0965520:intron 45.0%
TGTTTATTCCCTGAAGACCC+TGG - chr6_3:92962674-92962693 Msa0965520:CDS 45.0%
TCCAAAGGATTACCTGACCA+GGG + chr6_3:92962694-92962713 None:intergenic 45.0%
ATCCAAAGGATTACCTGACC+AGG + chr6_3:92962695-92962714 None:intergenic 45.0%
GACACAACCCTCTACTCTTT+AGG + chr6_3:92963233-92963252 None:intergenic 45.0%
!!! TTATTAATTTTTCTATAATA+TGG - chr6_3:92959053-92959072 Msa0965520:intron 5.0%
!! TAATTAAATATTATAAAACA+TGG + chr6_3:92959755-92959774 None:intergenic 5.0%
!! AATTAATAATCTAAATTATT+TGG - chr6_3:92963125-92963144 Msa0965520:intron 5.0%
AAAGGAGGAGGTTGTGGAGA+TGG + chr6_3:92958719-92958738 None:intergenic 50.0%
ATCAAGAGCTTCCCGAACCA+TGG - chr6_3:92958822-92958841 Msa0965520:intron 50.0%
TTGAAGGGGTGGAATTGTGG+GGG - chr6_3:92959299-92959318 Msa0965520:intron 50.0%
GTGGGGGAGGAAGATAAGAT+TGG - chr6_3:92959315-92959334 Msa0965520:intron 50.0%
TTACCTGACCAGGGTCTTCA+GGG + chr6_3:92962685-92962704 None:intergenic 50.0%
ATTACCTGACCAGGGTCTTC+AGG + chr6_3:92962686-92962705 None:intergenic 50.0%
ACCCTGGTCAGGTAATCCTT+TGG - chr6_3:92962690-92962709 Msa0965520:CDS 50.0%
GAAGAGGAAAGCAGCTGAAG+AGG - chr6_3:92962945-92962964 Msa0965520:intron 50.0%
CATGAGCAATCAGCCTTGGT+AGG + chr6_3:92963492-92963511 None:intergenic 50.0%
GCATCATGAGCAATCAGCCT+TGG + chr6_3:92963496-92963515 None:intergenic 50.0%
CAACACGGTGATCTGTGTCG+CGG - chr6_3:92960020-92960039 Msa0965520:intron 55.0%
ATTCCCTGAAGACCCTGGTC+AGG - chr6_3:92962679-92962698 Msa0965520:CDS 55.0%
GATTATTGGGCACCTGCCCT+AGG - chr6_3:92963300-92963319 Msa0965520:CDS 55.0%
! GGAGCACCACACCCTTTGGT+TGG + chr6_3:92958444-92958463 None:intergenic 60.0%
GGAGGAGGTTGTGGAGATGG+TGG + chr6_3:92958716-92958735 None:intergenic 60.0%
AAGGGGTGGAATTGTGGGGG+AGG - chr6_3:92959302-92959321 Msa0965520:intron 60.0%
TATTGGGCACCTGCCCTAGG+AGG - chr6_3:92963303-92963322 Msa0965520:CDS 60.0%
CCGAAAGCCTCCTCCTCCTA+GGG + chr6_3:92963319-92963338 None:intergenic 60.0%
CCCTAGGAGGAGGAGGCTTT+CGG - chr6_3:92963316-92963335 Msa0965520:CDS 60.0%
ACCGAAAGCCTCCTCCTCCT+AGG + chr6_3:92963320-92963339 None:intergenic 60.0%
!! AGGGGGAGCACCACACCCTT+TGG + chr6_3:92958448-92958467 None:intergenic 65.0%
AAGCCTCCTCCTCCTAGGGC+AGG + chr6_3:92963315-92963334 None:intergenic 65.0%
TGGGCACCTGCCCTAGGAGG+AGG - chr6_3:92963306-92963325 Msa0965520:CDS 70.0%
GCACCTGCCCTAGGAGGAGG+AGG - chr6_3:92963309-92963328 Msa0965520:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 92958327 92963716 92958327 ID=Msa0965520;Name=Msa0965520
chr6_3 mRNA 92958327 92963716 92958327 ID=Msa0965520-mRNA-1;Parent=Msa0965520;Name=Msa0965520-mRNA-1;_AED=0.14;_eAED=0.14;_QI=302|1|1|1|0.88|0.8|10|354|322
chr6_3 exon 92958327 92958433 92958327 ID=Msa0965520-mRNA-1:exon:16994;Parent=Msa0965520-mRNA-1
chr6_3 exon 92958455 92958839 92958455 ID=Msa0965520-mRNA-1:exon:16993;Parent=Msa0965520-mRNA-1
chr6_3 exon 92959077 92959118 92959077 ID=Msa0965520-mRNA-1:exon:16992;Parent=Msa0965520-mRNA-1
chr6_3 exon 92959343 92959387 92959343 ID=Msa0965520-mRNA-1:exon:16991;Parent=Msa0965520-mRNA-1
chr6_3 exon 92960395 92960451 92960395 ID=Msa0965520-mRNA-1:exon:16990;Parent=Msa0965520-mRNA-1
chr6_3 exon 92960610 92960675 92960610 ID=Msa0965520-mRNA-1:exon:16989;Parent=Msa0965520-mRNA-1
chr6_3 exon 92961447 92961512 92961447 ID=Msa0965520-mRNA-1:exon:16988;Parent=Msa0965520-mRNA-1
chr6_3 exon 92961790 92961864 92961790 ID=Msa0965520-mRNA-1:exon:16987;Parent=Msa0965520-mRNA-1
chr6_3 exon 92962489 92962738 92962489 ID=Msa0965520-mRNA-1:exon:16986;Parent=Msa0965520-mRNA-1
chr6_3 exon 92963185 92963716 92963185 ID=Msa0965520-mRNA-1:exon:16985;Parent=Msa0965520-mRNA-1
chr6_3 five_prime_UTR 92963415 92963716 92963415 ID=Msa0965520-mRNA-1:five_prime_utr;Parent=Msa0965520-mRNA-1
chr6_3 CDS 92963185 92963414 92963185 ID=Msa0965520-mRNA-1:cds;Parent=Msa0965520-mRNA-1
chr6_3 CDS 92962489 92962738 92962489 ID=Msa0965520-mRNA-1:cds;Parent=Msa0965520-mRNA-1
chr6_3 CDS 92961790 92961864 92961790 ID=Msa0965520-mRNA-1:cds;Parent=Msa0965520-mRNA-1
chr6_3 CDS 92961447 92961512 92961447 ID=Msa0965520-mRNA-1:cds;Parent=Msa0965520-mRNA-1
chr6_3 CDS 92960610 92960675 92960610 ID=Msa0965520-mRNA-1:cds;Parent=Msa0965520-mRNA-1
chr6_3 CDS 92960395 92960451 92960395 ID=Msa0965520-mRNA-1:cds;Parent=Msa0965520-mRNA-1
chr6_3 CDS 92959343 92959387 92959343 ID=Msa0965520-mRNA-1:cds;Parent=Msa0965520-mRNA-1
chr6_3 CDS 92959077 92959118 92959077 ID=Msa0965520-mRNA-1:cds;Parent=Msa0965520-mRNA-1
chr6_3 CDS 92958702 92958839 92958702 ID=Msa0965520-mRNA-1:cds;Parent=Msa0965520-mRNA-1
chr6_3 three_prime_UTR 92958455 92958701 92958455 ID=Msa0965520-mRNA-1:three_prime_utr;Parent=Msa0965520-mRNA-1
chr6_3 three_prime_UTR 92958327 92958433 92958327 ID=Msa0965520-mRNA-1:three_prime_utr;Parent=Msa0965520-mRNA-1
Gene Sequence

>Msa0965520

ATGAATAGAGGTGTTGTTCAAAGCTCTCCAGTTCAACAAATGATGGCTAGTAACCCTAATTGGTGGAACATCAATAACATGAGGCCACCATCTCCACAACCTCCTCCTTTATTTTCATCTCCTTCTAACTTTCTCAACCCTAATTATGCACCAACTTCATCTTTTCTTCCTTTTTCTTCATGGCATGAAAATCATCAAGAGCTTCCCGAACCATGGAGTCAACAACTCATGGGTGGAATTGTGGGGGAGGAAGATAAGATTGGTATGAGCCAATTTCAAAATCAAATGCTAATAAGTCAAGCTCCAAATGCTTCTCTTGTTGATATTAAACAAGAAAACTCAGGAAATAGCTATGCATATGGACATGGAAATGAAGAACTTAATTCATGTGTGACAAGTTTCAATAACAACATGTTGGATTTCACTAACAACAATAGTAATATAGATGTGAGGCATCCACCACTAGATCGATCTTCTGAGTGTAACAGTTCTGCATCTGGTGGGACAATGAAAAAAGCTAGGGTTCAACAATCTACAACTCAAACTACTTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCCCTTCATCAGCTTGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTTCAGGGTCAAATTGAGGCTCTTAGCTTACCATACTTGAGCAATGGATCAGGAAATACAAGGCAACCACATTCGGTTCAAGGAGAGAATAATTGTTTATTCCCTGAAGACCCTGGTCAGCTCCTAAATGAAAATGGCTTGAAGAGGAAAGCAGCTGAAGAGGTTTCTCAAGAAGAACATAAGAAGAACCTAAAGAGTAGAGGGTTGTGTCTTGTTCCAGTATCATGTACACTACAAGTTGGGAATGACAATGGAGCTGATTATTGGGCACCTGCCCTAGGAGGAGGAGGCTTTCGGTAG

Protein sequence

>Msa0965520

MNRGVVQSSPVQQMMASNPNWWNINNMRPPSPQPPPLFSSPSNFLNPNYAPTSSFLPFSSWHENHQELPEPWSQQLMGGIVGEEDKIGMSQFQNQMLISQAPNASLVDIKQENSGNSYAYGHGNEELNSCVTSFNNNMLDFTNNNSNIDVRHPPLDRSSECNSSASGGTMKKARVQQSTTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSLPYLSNGSGNTRQPHSVQGENNCLFPEDPGQLLNENGLKRKAAEEVSQEEHKKNLKSRGLCLVPVSCTLQVGNDNGADYWAPALGGGGFR*