Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444090 | XP_003598625.1 | 96.831 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444090 | sp|Q9FLE8|Y5986_ARATH | 48.780 | 164 | 66 | 6 | 116 | 261 | 225 | 388 | 2.30e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444090 | G7IYV7 | 96.831 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa0444090 | -0.805376 | 1.375567e-49 | -8.615850e-47 |
| Msa0025740 | Msa0444090 | 0.803214 | 3.879152e-49 | -8.615850e-47 |
| Msa0050760 | Msa0444090 | 0.804628 | 1.971912e-49 | -8.615850e-47 |
| Msa0052030 | Msa0444090 | 0.805785 | 1.129050e-49 | -8.615850e-47 |
| Msa0057520 | Msa0444090 | 0.823207 | 1.568032e-53 | -8.615850e-47 |
| Msa0071550 | Msa0444090 | 0.817904 | 2.588185e-52 | -8.615850e-47 |
| Msa0085720 | Msa0444090 | 0.818882 | 1.554564e-52 | -8.615850e-47 |
| Msa0092990 | Msa0444090 | 0.815999 | 6.933555e-52 | -8.615850e-47 |
| Msa0115810 | Msa0444090 | 0.800350 | 1.502109e-48 | -8.615850e-47 |
| Msa0117770 | Msa0444090 | 0.830921 | 2.235954e-55 | -8.615850e-47 |
| Msa0120340 | Msa0444090 | 0.830180 | 3.395911e-55 | -8.615850e-47 |
| Msa0122590 | Msa0444090 | 0.804985 | 1.661025e-49 | -8.615850e-47 |
| Msa0124550 | Msa0444090 | 0.803667 | 3.124391e-49 | -8.615850e-47 |
| Msa0145310 | Msa0444090 | 0.801792 | 7.617256e-49 | -8.615850e-47 |
| Msa0163780 | Msa0444090 | 0.808755 | 2.650391e-50 | -8.615850e-47 |
| Msa0169820 | Msa0444090 | 0.803405 | 3.540668e-49 | -8.615850e-47 |
| Msa0178860 | Msa0444090 | -0.813827 | 2.101726e-51 | -8.615850e-47 |
| Msa0199800 | Msa0444090 | -0.806692 | 7.270964e-50 | -8.615850e-47 |
| Msa0217400 | Msa0444090 | 0.804455 | 2.142859e-49 | -8.615850e-47 |
| Msa0223380 | Msa0444090 | 0.800391 | 1.473392e-48 | -8.615850e-47 |
| Msa0233610 | Msa0444090 | 0.802765 | 4.803114e-49 | -8.615850e-47 |
| Msa0365490 | Msa0444090 | 0.851606 | 7.953854e-61 | -8.615850e-47 |
| Msa0376590 | Msa0444090 | 0.802612 | 5.165711e-49 | -8.615850e-47 |
| Msa0379640 | Msa0444090 | 0.817586 | 3.054604e-52 | -8.615850e-47 |
| Msa0388030 | Msa0444090 | -0.813585 | 2.375706e-51 | -8.615850e-47 |
| Msa0389810 | Msa0444090 | 0.822986 | 1.765696e-53 | -8.615850e-47 |
| Msa0444090 | Msa0458440 | 0.856528 | 3.026507e-62 | -8.615850e-47 |
| Msa0444090 | Msa0464900 | 0.840822 | 6.899045e-58 | -8.615850e-47 |
| Msa0444090 | Msa0465680 | -0.812954 | 3.269337e-51 | -8.615850e-47 |
| Msa0444090 | Msa0466390 | 0.803045 | 4.204744e-49 | -8.615850e-47 |
| Msa0444090 | Msa0468130 | 0.812794 | 3.543075e-51 | -8.615850e-47 |
| Msa0444090 | Msa0482190 | -0.806626 | 7.507356e-50 | -8.615850e-47 |
| Msa0444090 | Msa0484780 | 0.820013 | 8.580958e-53 | -8.615850e-47 |
| Msa0444090 | Msa0485500 | -0.800976 | 1.119561e-48 | -8.615850e-47 |
| Msa0444090 | Msa0491500 | 0.856343 | 3.429985e-62 | -8.615850e-47 |
| Msa0444090 | Msa0491520 | 0.891320 | 4.423120e-74 | -8.615850e-47 |
| Msa0444090 | Msa0525610 | 0.806200 | 9.233818e-50 | -8.615850e-47 |
| Msa0444090 | Msa0527250 | 0.813315 | 2.724006e-51 | -8.615850e-47 |
| Msa0444090 | Msa0530650 | 0.854843 | 9.397923e-62 | -8.615850e-47 |
| Msa0444090 | Msa0536220 | 0.809445 | 1.885674e-50 | -8.615850e-47 |
| Msa0444090 | Msa0553460 | 0.804696 | 1.908670e-49 | -8.615850e-47 |
| Msa0444090 | Msa0555720 | 0.804609 | 1.989924e-49 | -8.615850e-47 |
| Msa0444090 | Msa0558690 | 0.824568 | 7.522155e-54 | -8.615850e-47 |
| Msa0444090 | Msa0574850 | 0.839608 | 1.431177e-57 | -8.615850e-47 |
| Msa0444090 | Msa0580000 | 0.805509 | 1.290098e-49 | -8.615850e-47 |
| Msa0444090 | Msa0587190 | 0.858911 | 5.952105e-63 | -8.615850e-47 |
| Msa0444090 | Msa0599580 | 0.822713 | 2.044040e-53 | -8.615850e-47 |
| Msa0444090 | Msa0613460 | 0.806646 | 7.433911e-50 | -8.615850e-47 |
| Msa0444090 | Msa0626990 | 0.855028 | 8.303641e-62 | -8.615850e-47 |
| Msa0444090 | Msa0627350 | 0.856876 | 2.390823e-62 | -8.615850e-47 |
| Msa0444090 | Msa0637070 | 0.835039 | 2.115606e-56 | -8.615850e-47 |
| Msa0444090 | Msa0649130 | 0.803133 | 4.032098e-49 | -8.615850e-47 |
| Msa0444090 | Msa0651190 | 0.802077 | 6.658312e-49 | -8.615850e-47 |
| Msa0444090 | Msa0660300 | 0.822519 | 2.268903e-53 | -8.615850e-47 |
| Msa0444090 | Msa0662650 | 0.824828 | 6.532271e-54 | -8.615850e-47 |
| Msa0444090 | Msa0679550 | 0.848460 | 6.042463e-60 | -8.615850e-47 |
| Msa0444090 | Msa0688070 | 0.812251 | 4.656631e-51 | -8.615850e-47 |
| Msa0444090 | Msa0690440 | 0.804920 | 1.713403e-49 | -8.615850e-47 |
| Msa0444090 | Msa0694250 | 0.805577 | 1.247960e-49 | -8.615850e-47 |
| Msa0444090 | Msa0708860 | 0.830913 | 2.246954e-55 | -8.615850e-47 |
| Msa0444090 | Msa0731180 | 0.820713 | 5.929312e-53 | -8.615850e-47 |
| Msa0444090 | Msa0743120 | -0.812859 | 3.429698e-51 | -8.615850e-47 |
| Msa0444090 | Msa0744170 | -0.815028 | 1.140275e-51 | -8.615850e-47 |
| Msa0444090 | Msa0748730 | 0.807039 | 6.141687e-50 | -8.615850e-47 |
| Msa0444090 | Msa0757080 | 0.811081 | 8.367034e-51 | -8.615850e-47 |
| Msa0444090 | Msa0771580 | 0.801579 | 8.425888e-49 | -8.615850e-47 |
| Msa0444090 | Msa0827470 | 0.939133 | 2.120544e-99 | -8.615850e-47 |
| Msa0444090 | Msa0864470 | -0.810298 | 1.235908e-50 | -8.615850e-47 |
| Msa0444090 | Msa0899230 | 0.800439 | 1.440289e-48 | -8.615850e-47 |
| Msa0444090 | Msa0907070 | 0.801535 | 8.601748e-49 | -8.615850e-47 |
| Msa0444090 | Msa0908170 | 0.827958 | 1.173393e-54 | -8.615850e-47 |
| Msa0444090 | Msa0910980 | -0.833065 | 6.603832e-56 | -8.615850e-47 |
| Msa0444090 | Msa0927670 | 0.831578 | 1.541505e-55 | -8.615850e-47 |
| Msa0444090 | Msa0946690 | -0.814226 | 1.715712e-51 | -8.615850e-47 |
| Msa0444090 | Msa0960160 | 0.838345 | 3.038445e-57 | -8.615850e-47 |
| Msa0444090 | Msa0961420 | -0.818290 | 2.116960e-52 | -8.615850e-47 |
| Msa0444090 | Msa0961490 | 0.817820 | 2.704476e-52 | -8.615850e-47 |
| Msa0444090 | Msa0964130 | 0.815642 | 8.328695e-52 | -8.615850e-47 |
| Msa0444090 | Msa0965520 | 0.817181 | 3.768159e-52 | -8.615850e-47 |
| Msa0444090 | Msa0982270 | 0.822719 | 2.037525e-53 | -8.615850e-47 |
| Msa0444090 | Msa0990960 | 0.802940 | 4.419625e-49 | -8.615850e-47 |
| Msa0444090 | Msa0999040 | 0.833114 | 6.422549e-56 | -8.615850e-47 |
| Msa0444090 | Msa0999960 | -0.813323 | 2.712563e-51 | -8.615850e-47 |
| Msa0444090 | Msa1006160 | -0.823930 | 1.062620e-53 | -8.615850e-47 |
| Msa0444090 | Msa1006850 | 0.802080 | 6.648012e-49 | -8.615850e-47 |
| Msa0444090 | Msa1021510 | 0.800409 | 1.461201e-48 | -8.615850e-47 |
| Msa0444090 | Msa1032440 | 0.809786 | 1.592815e-50 | -8.615850e-47 |
| Msa0444090 | Msa1033410 | -0.812423 | 4.270608e-51 | -8.615850e-47 |
| Msa0444090 | Msa1037700 | -0.808028 | 3.786653e-50 | -8.615850e-47 |
| Msa0444090 | Msa1039880 | 0.835116 | 2.024036e-56 | -8.615850e-47 |
| Msa0444090 | Msa1068200 | -0.800836 | 1.195312e-48 | -8.615850e-47 |
| Msa0444090 | Msa1073070 | -0.835485 | 1.632664e-56 | -8.615850e-47 |
| Msa0444090 | Msa1075080 | -0.815742 | 7.911566e-52 | -8.615850e-47 |
| Msa0444090 | Msa1091830 | 0.820188 | 7.828529e-53 | -8.615850e-47 |
| Msa0444090 | Msa1092090 | 0.833094 | 6.495246e-56 | -8.615850e-47 |
| Msa0444090 | Msa1109820 | 0.805070 | 1.594442e-49 | -8.615850e-47 |
| Msa0444090 | Msa1118110 | 0.820543 | 6.488631e-53 | -8.615850e-47 |
| Msa0444090 | Msa1130270 | -0.805321 | 1.412162e-49 | -8.615850e-47 |
| Msa0444090 | Msa1162550 | -0.814267 | 1.680413e-51 | -8.615850e-47 |
| Msa0444090 | Msa1174310 | 0.814641 | 1.389475e-51 | -8.615850e-47 |
| Msa0444090 | Msa1214880 | 0.811545 | 6.635359e-51 | -8.615850e-47 |
| Msa0444090 | Msa1215920 | 0.810583 | 1.072238e-50 | -8.615850e-47 |
| Msa0444090 | Msa1224480 | 0.811322 | 7.417166e-51 | -8.615850e-47 |
| Msa0444090 | Msa1228160 | -0.854288 | 1.359956e-61 | -8.615850e-47 |
| Msa0444090 | Msa1230830 | 0.806448 | 8.187230e-50 | -8.615850e-47 |
| Msa0444090 | Msa1233500 | 0.840753 | 7.191808e-58 | -8.615850e-47 |
| Msa0444090 | Msa1235400 | 0.811050 | 8.496571e-51 | -8.615850e-47 |
| Msa0444090 | Msa1236070 | -0.802528 | 5.374573e-49 | -8.615850e-47 |
| Msa0444090 | Msa1258380 | -0.805157 | 1.528749e-49 | -8.615850e-47 |
| Msa0444090 | Msa1263290 | -0.803922 | 2.766569e-49 | -8.615850e-47 |
| Msa0444090 | Msa1276440 | 0.835620 | 1.509635e-56 | -8.615850e-47 |
| Msa0444090 | Msa1289530 | 0.807873 | 4.086000e-50 | -8.615850e-47 |
| Msa0444090 | Msa1298260 | 0.803822 | 2.902101e-49 | -8.615850e-47 |
| Msa0444090 | Msa1306750 | 0.848148 | 7.372285e-60 | -8.615850e-47 |
| Msa0444090 | Msa1307740 | 0.819867 | 9.271005e-53 | -8.615850e-47 |
| Msa0444090 | Msa1314340 | 0.811008 | 8.678133e-51 | -8.615850e-47 |
| Msa0444090 | Msa1314770 | 0.828437 | 8.993230e-55 | -8.615850e-47 |
| Msa0444090 | Msa1322190 | 0.822314 | 2.531826e-53 | -8.615850e-47 |
| Msa0444090 | Msa1333730 | 0.802797 | 4.731414e-49 | -8.615850e-47 |
| Msa0444090 | Msa1371580 | 0.813682 | 2.262547e-51 | -8.615850e-47 |
| Msa0444090 | Msa1373350 | 0.821882 | 3.187702e-53 | -8.615850e-47 |
| Msa0444090 | Msa1376930 | 0.822929 | 1.821330e-53 | -8.615850e-47 |
| Msa0444090 | Msa1378230 | 0.803476 | 3.422931e-49 | -8.615850e-47 |
| Msa0444090 | Msa1379710 | 0.818356 | 2.045710e-52 | -8.615850e-47 |
| Msa0444090 | Msa1393040 | 0.842349 | 2.729810e-58 | -8.615850e-47 |
| Msa0444090 | Msa1407600 | 0.807408 | 5.129878e-50 | -8.615850e-47 |
| Msa0444090 | Msa1420140 | 0.822683 | 2.077852e-53 | -8.615850e-47 |
| Msa0444090 | Msa1440600 | 0.805254 | 1.458590e-49 | -8.615850e-47 |
| Msa0444090 | Msa1440940 | 0.808316 | 3.288958e-50 | -8.615850e-47 |
| Msa0444090 | Msa1444250 | -0.812655 | 3.800655e-51 | -8.615850e-47 |
| Msa0444090 | Msa1445030 | 0.837147 | 6.171487e-57 | -8.615850e-47 |
| Msa0444090 | Msa1451620 | -0.827262 | 1.724319e-54 | -8.615850e-47 |
| Msa0444090 | Msa1466730 | 0.800824 | 1.202160e-48 | -8.615850e-47 |
| Msa0269450 | Msa0444090 | 0.834712 | 2.558026e-56 | -8.615850e-47 |
| Msa0276920 | Msa0444090 | 0.805475 | 1.311491e-49 | -8.615850e-47 |
| Msa0279210 | Msa0444090 | -0.824386 | 8.300147e-54 | -8.615850e-47 |
| Msa0279250 | Msa0444090 | -0.802413 | 5.676464e-49 | -8.615850e-47 |
| Msa0309550 | Msa0444090 | 0.806156 | 9.432940e-50 | -8.615850e-47 |
| Msa0318970 | Msa0444090 | -0.817672 | 2.921131e-52 | -8.615850e-47 |
| Msa0335040 | Msa0444090 | 0.805783 | 1.130009e-49 | -8.615850e-47 |
| Msa0347650 | Msa0444090 | 0.805286 | 1.436507e-49 | -8.615850e-47 |
| Msa0354800 | Msa0444090 | -0.805186 | 1.507451e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444090 | MtrunA17_Chr3g0083531 | 96.831 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 0.0 | 558 |
| Msa0444090 | MtrunA17_Chr8g0352771 | 51.880 | 266 | 104 | 3 | 2 | 264 | 13 | 257 | 6.28e-86 | 257 |
| Msa0444090 | MtrunA17_Chr7g0256501 | 63.816 | 152 | 54 | 1 | 111 | 261 | 273 | 424 | 2.10e-69 | 221 |
| Msa0444090 | MtrunA17_Chr1g0171871 | 60.000 | 160 | 55 | 1 | 111 | 261 | 204 | 363 | 7.22e-67 | 212 |
| Msa0444090 | MtrunA17_Chr3g0105871 | 49.351 | 154 | 75 | 3 | 111 | 263 | 83 | 234 | 1.05e-49 | 164 |
| Msa0444090 | MtrunA17_Chr5g0437471 | 53.061 | 147 | 67 | 2 | 115 | 261 | 94 | 238 | 3.19e-49 | 163 |
| Msa0444090 | MtrunA17_Chr5g0431071 | 42.246 | 187 | 99 | 3 | 82 | 261 | 69 | 253 | 1.41e-46 | 157 |
| Msa0444090 | MtrunA17_Chr3g0113971 | 51.389 | 144 | 68 | 2 | 118 | 261 | 93 | 234 | 2.22e-45 | 153 |
| Msa0444090 | MtrunA17_Chr7g0266401 | 45.946 | 148 | 78 | 1 | 114 | 261 | 259 | 404 | 1.07e-40 | 145 |
| Msa0444090 | MtrunA17_Chr1g0196971 | 46.309 | 149 | 78 | 2 | 114 | 262 | 223 | 369 | 5.02e-40 | 142 |
| Msa0444090 | MtrunA17_Chr7g0267591 | 45.513 | 156 | 74 | 3 | 116 | 262 | 126 | 279 | 6.24e-40 | 140 |
| Msa0444090 | MtrunA17_Chr8g0388481 | 45.223 | 157 | 77 | 3 | 113 | 261 | 212 | 367 | 1.01e-36 | 134 |
| Msa0444090 | MtrunA17_Chr8g0392761 | 45.161 | 155 | 80 | 2 | 113 | 262 | 120 | 274 | 1.75e-36 | 131 |
| Msa0444090 | MtrunA17_Chr7g0217121 | 44.242 | 165 | 73 | 3 | 116 | 261 | 267 | 431 | 3.22e-35 | 131 |
| Msa0444090 | MtrunA17_Chr6g0453031 | 42.197 | 173 | 80 | 6 | 109 | 261 | 250 | 422 | 1.20e-34 | 129 |
| Msa0444090 | MtrunA17_Chr3g0089011 | 37.255 | 153 | 78 | 3 | 128 | 262 | 2 | 154 | 9.96e-24 | 94.4 |
| Msa0444090 | MtrunA17_Chr5g0412021 | 35.484 | 93 | 53 | 2 | 156 | 241 | 1 | 93 | 8.79e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444090 | AT5G13810.1 | 55.682 | 264 | 97 | 5 | 6 | 262 | 23 | 273 | 2.71e-95 | 282 |
| Msa0444090 | AT2G41330.1 | 56.442 | 163 | 69 | 2 | 101 | 261 | 239 | 401 | 1.80e-55 | 184 |
| Msa0444090 | AT3G57070.1 | 56.494 | 154 | 65 | 1 | 110 | 261 | 262 | 415 | 1.48e-54 | 182 |
| Msa0444090 | AT5G58530.1 | 45.000 | 200 | 94 | 5 | 76 | 262 | 70 | 266 | 1.11e-49 | 166 |
| Msa0444090 | AT5G39865.1 | 48.780 | 164 | 66 | 6 | 116 | 261 | 225 | 388 | 2.34e-42 | 149 |
| Msa0444090 | AT5G06470.1 | 41.618 | 173 | 86 | 4 | 102 | 262 | 70 | 239 | 7.76e-41 | 142 |
| Msa0444090 | AT3G28850.1 | 42.614 | 176 | 71 | 3 | 116 | 261 | 251 | 426 | 1.57e-38 | 140 |
| Msa0444090 | AT4G10630.1 | 46.584 | 161 | 74 | 4 | 114 | 262 | 174 | 334 | 2.15e-38 | 138 |
| Msa0444090 | AT1G32760.1 | 49.689 | 161 | 73 | 4 | 110 | 262 | 154 | 314 | 2.48e-38 | 137 |
| Msa0444090 | AT3G11773.1 | 46.479 | 142 | 73 | 3 | 121 | 262 | 12 | 150 | 4.68e-36 | 126 |
| Msa0444090 | AT5G03870.1 | 44.667 | 150 | 82 | 1 | 114 | 262 | 235 | 384 | 2.47e-35 | 131 |
| Msa0444090 | AT1G64500.1 | 43.421 | 152 | 78 | 3 | 118 | 261 | 214 | 365 | 3.14e-34 | 127 |
| Msa0444090 | AT5G01420.1 | 43.333 | 150 | 82 | 3 | 114 | 262 | 254 | 401 | 8.06e-32 | 122 |
| Msa0444090 | AT3G11773.2 | 47.321 | 112 | 56 | 3 | 151 | 262 | 92 | 200 | 6.08e-26 | 102 |
Find 78 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGGGTTTAGGGTTT+GGG | 0.218316 | 3_3:-16855211 | Msa0444090:CDS |
| ATCAGAGAATAGGAGGAAAA+AGG | 0.262644 | 3_3:+16853428 | None:intergenic |
| TGTCCTTGTTGCGCCTGTTC+TGG | 0.268180 | 3_3:-16853797 | Msa0444090:CDS |
| GTTGTTGTTGTTTATGTAGT+TGG | 0.286184 | 3_3:+16855949 | None:intergenic |
| TTATATTACAGAAGCGATTA+TGG | 0.292045 | 3_3:-16853658 | Msa0444090:three_prime_UTR |
| TGCCTCATTTCACAATATAA+AGG | 0.292837 | 3_3:+16853727 | None:intergenic |
| ATTAAACATAACTGCAAAAC+TGG | 0.316340 | 3_3:-16853539 | Msa0444090:three_prime_UTR |
| CCACGTGCGGCTTCGAAGTT+AGG | 0.339185 | 3_3:-16855378 | Msa0444090:CDS |
| ATGAAAAGGGTATGTTGTTT+CGG | 0.362170 | 3_3:-16855326 | Msa0444090:CDS |
| CTGCCTCAAGTGTTCGTTAG+AGG | 0.365217 | 3_3:-16854046 | Msa0444090:CDS |
| ATTAAGTCTCTATTTGAAAC+TGG | 0.365236 | 3_3:-16853998 | Msa0444090:CDS |
| AGGATTTGAAAGAAAGAAGT+TGG | 0.382704 | 3_3:+16855913 | None:intergenic |
| CATAAACAAACAAGAGTAAT+GGG | 0.396549 | 3_3:+16853397 | None:intergenic |
| TGCTTTCAGAAAAGAATTGC+AGG | 0.412980 | 3_3:-16855160 | Msa0444090:intron |
| CTTCGAAGCCGCACGTGGTT+CGG | 0.416891 | 3_3:+16855383 | None:intergenic |
| TTGAAACTGGTGAATTGAAA+AGG | 0.417136 | 3_3:-16853985 | Msa0444090:CDS |
| TTAGGTCAGAAGCCGCGTTC+TGG | 0.417750 | 3_3:-16855360 | Msa0444090:CDS |
| TGATGAAAGAGATGTTTCTA+TGG | 0.421139 | 3_3:-16855187 | Msa0444090:CDS |
| CGGTCTAGAAATTCGTTGAA+TGG | 0.435296 | 3_3:+16855564 | None:intergenic |
| TCAGAAGCCGCGTTCTGGTT+CGG | 0.442103 | 3_3:-16855355 | Msa0444090:CDS |
| GCCGCACGTGGTTCGGAAGA+AGG | 0.443209 | 3_3:+16855390 | None:intergenic |
| AACAAAGCCAGGCTTCATCT+TGG | 0.443746 | 3_3:+16853946 | None:intergenic |
| GGGTATGTTGTTTCGGTTGG+CGG | 0.446125 | 3_3:-16855319 | Msa0444090:CDS |
| ACAAAGCCAGGCTTCATCTT+GGG | 0.451900 | 3_3:+16853947 | None:intergenic |
| ATCCTTTATATTGTGAAATG+AGG | 0.457812 | 3_3:-16853729 | Msa0444090:exon |
| AAGCAAATTCTACGGTTCAA+TGG | 0.458730 | 3_3:-16855529 | Msa0444090:CDS |
| AGGGATAAGAAGAACGTTTG+AGG | 0.460025 | 3_3:-16855256 | Msa0444090:CDS |
| GCGAGAGTTGTGGCGATGCT+AGG | 0.463600 | 3_3:-16853922 | Msa0444090:CDS |
| ACAGAACATCATTCCAGAAC+AGG | 0.474894 | 3_3:+16853784 | None:intergenic |
| TGGTTCGGAAGAAGATGAAA+AGG | 0.475046 | 3_3:-16855340 | Msa0444090:CDS |
| ATTGTTGCTGCAGTCTGTGA+TGG | 0.475824 | 3_3:-16854086 | Msa0444090:intron |
| GTAGAATTTGCTTAACGAAC+CGG | 0.485771 | 3_3:+16855539 | None:intergenic |
| ATCATCTTTACGTGGAAGAA+TGG | 0.487437 | 3_3:-16855496 | Msa0444090:CDS |
| CAACTCTCGCAAACAAAGCC+AGG | 0.491107 | 3_3:+16853935 | None:intergenic |
| GGAACACAACATCAGAGAAT+AGG | 0.493847 | 3_3:+16853418 | None:intergenic |
| AAAGGGTATGTTGTTTCGGT+TGG | 0.494457 | 3_3:-16855322 | Msa0444090:CDS |
| ACAAAACAAAACGATGTTCA+AGG | 0.501444 | 3_3:+16853593 | None:intergenic |
| TCATAAACAAACAAGAGTAA+TGG | 0.506338 | 3_3:+16853396 | None:intergenic |
| GTGAGAATTGCAGTGGAAGT+AGG | 0.507165 | 3_3:-16853889 | Msa0444090:CDS |
| AGGGTTGTTGAAAAGATGCT+TGG | 0.515319 | 3_3:-16853846 | Msa0444090:CDS |
| ACCTTCTTCCGAACCACGTG+CGG | 0.515628 | 3_3:-16855391 | Msa0444090:CDS |
| GAATTGAAAAGGATTCTTGA+AGG | 0.524790 | 3_3:-16853974 | Msa0444090:CDS |
| TGCTTGGAGTGCAATGAGAA+TGG | 0.530091 | 3_3:-16853830 | Msa0444090:CDS |
| CTATAGATAATGATAAAGAA+TGG | 0.531876 | 3_3:-16853463 | Msa0444090:three_prime_UTR |
| AACGAATTTCTAGACCGGTC+CGG | 0.532633 | 3_3:-16855558 | Msa0444090:CDS |
| AAGCGATTATGGTTGCAGCC+TGG | 0.543214 | 3_3:-16853647 | Msa0444090:three_prime_UTR |
| ATTTGCTTAACGAACCGGAC+CGG | 0.549932 | 3_3:+16855544 | None:intergenic |
| GGTTGGCGGATGCTGATGAT+CGG | 0.555952 | 3_3:-16855305 | Msa0444090:CDS |
| GGCTTTGTTTGCGAGAGTTG+TGG | 0.556620 | 3_3:-16853932 | Msa0444090:CDS |
| AAATTATTTGATGAGGACGA+AGG | 0.563626 | 3_3:-16853866 | Msa0444090:CDS |
| TGTATTTGACGAGTTTGAGA+GGG | 0.565359 | 3_3:-16855275 | Msa0444090:CDS |
| GGTTCGGAAGAAGATGAAAA+GGG | 0.565516 | 3_3:-16855339 | Msa0444090:CDS |
| AATTATTTGATGAGGACGAA+GGG | 0.567574 | 3_3:-16853865 | Msa0444090:CDS |
| GTTAGAGGAAAGTACATTGG+TGG | 0.570244 | 3_3:-16854031 | Msa0444090:CDS |
| TTGTTGCTGCAGTCTGTGAT+GGG | 0.579187 | 3_3:-16854085 | Msa0444090:intron |
| ACACAACATCAGAGAATAGG+AGG | 0.583307 | 3_3:+16853421 | None:intergenic |
| GGTTCGTTAAGCAAATTCTA+CGG | 0.596106 | 3_3:-16855537 | Msa0444090:CDS |
| TTCGTTAGAGGAAAGTACAT+TGG | 0.597968 | 3_3:-16854034 | Msa0444090:CDS |
| TCTTCTTCCGAACCAGAACG+CGG | 0.600432 | 3_3:+16855348 | None:intergenic |
| ACGTGTGCATCGTGTTTGAT+CGG | 0.601162 | 3_3:+16855610 | None:intergenic |
| GTGTATTTGACGAGTTTGAG+AGG | 0.605361 | 3_3:-16855276 | Msa0444090:CDS |
| AAGTAGGAAATTATTTGATG+AGG | 0.609112 | 3_3:-16853873 | Msa0444090:CDS |
| CATTCAACGAATTTCTAGAC+CGG | 0.610493 | 3_3:-16855563 | Msa0444090:CDS |
| CTTCCACTGCAATTCTCACA+AGG | 0.614637 | 3_3:+16853893 | None:intergenic |
| AACGTTTGAGGATTGTAATG+CGG | 0.616814 | 3_3:-16855244 | Msa0444090:CDS |
| ATACCTTGTGAGAATTGCAG+TGG | 0.623291 | 3_3:-16853896 | Msa0444090:CDS |
| ATTCCAGAACAGGCGCAACA+AGG | 0.629811 | 3_3:+16853794 | None:intergenic |
| GGATGCTGATGATCGGATTG+TGG | 0.634382 | 3_3:-16855298 | Msa0444090:CDS |
| CCTAACTTCGAAGCCGCACG+TGG | 0.643711 | 3_3:+16855378 | None:intergenic |
| GCTGCAGTCTGTGATGGGTG+AGG | 0.646757 | 3_3:-16854080 | Msa0444090:intron |
| TTTCCTCTAACGAACACTTG+AGG | 0.653351 | 3_3:+16854043 | None:intergenic |
| AAAGAGTGAAATGAAATGTG+TGG | 0.656253 | 3_3:+16855890 | None:intergenic |
| GCAATGAGAATGGACTTGTA+AGG | 0.683440 | 3_3:-16853820 | Msa0444090:CDS |
| GGAATTTAAAACCATGACAG+TGG | 0.684677 | 3_3:-16853626 | Msa0444090:three_prime_UTR |
| TTCTGTGAGTATGAAAACGA+GGG | 0.688210 | 3_3:-16853767 | Msa0444090:CDS |
| GAGTGAAATGAAATGTGTGG+AGG | 0.701200 | 3_3:+16855893 | None:intergenic |
| GTTCTGTGAGTATGAAAACG+AGG | 0.730092 | 3_3:-16853768 | Msa0444090:CDS |
| TCAATGAAATCATCTTTACG+TGG | 0.737140 | 3_3:-16855504 | Msa0444090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTACTAGAAAAAAA+GGG | + | chr3_3:16854626-16854645 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTACTAGAAAAAA+AGG | + | chr3_3:16854627-16854646 | None:intergenic | 10.0% |
| !! | TATAAAATTATGTTCTATAT+TGG | + | chr3_3:16855181-16855200 | None:intergenic | 10.0% |
| !! | AATATAATCATACAAAATAC+TGG | + | chr3_3:16854401-16854420 | None:intergenic | 15.0% |
| !! | TTTCAAAATGTAGTTAAATT+GGG | + | chr3_3:16854830-16854849 | None:intergenic | 15.0% |
| !!! | GGTTTTTTTGTTTTTGTTTA+TGG | + | chr3_3:16853552-16853571 | None:intergenic | 20.0% |
| !! | AAAAAGAACAAAAAGAAAGA+AGG | + | chr3_3:16854218-16854237 | None:intergenic | 20.0% |
| !!! | AATTTTTACCGATTTAAAGA+TGG | - | chr3_3:16854530-16854549 | Msa0444090:intron | 20.0% |
| !!! | GTTACAATGTTTTTAACATA+TGG | - | chr3_3:16854552-16854571 | Msa0444090:intron | 20.0% |
| !! | TTAACATATGGTGAAAAATA+AGG | - | chr3_3:16854564-16854583 | Msa0444090:intron | 20.0% |
| !! | TAACATATGGTGAAAAATAA+GGG | - | chr3_3:16854565-16854584 | Msa0444090:intron | 20.0% |
| !! | TAATTGTTGATGCATAATAA+AGG | - | chr3_3:16854719-16854738 | Msa0444090:intron | 20.0% |
| !! | GTTTCAAAATGTAGTTAAAT+TGG | + | chr3_3:16854831-16854850 | None:intergenic | 20.0% |
| !! | AATTAGAAAAGCTATGAATT+TGG | - | chr3_3:16854922-16854941 | Msa0444090:intron | 20.0% |
| !! | ATTAGAAAAGCTATGAATTT+GGG | - | chr3_3:16854923-16854942 | Msa0444090:intron | 20.0% |
| !! | AATATTAACAAGCTTTCAAA+AGG | + | chr3_3:16855116-16855135 | None:intergenic | 20.0% |
| !! | CTATAGATAATGATAAAGAA+TGG | - | chr3_3:16855882-16855901 | Msa0444090:five_prime_UTR | 20.0% |
| !!! | TTTGTTTTTGTTTATGGCTA+TGG | + | chr3_3:16853546-16853565 | None:intergenic | 25.0% |
| !! | CTTTTTCTGTTTGCAATATT+TGG | + | chr3_3:16853573-16853592 | None:intergenic | 25.0% |
| ! | AAACATGCATTAAATATGTC+TGG | + | chr3_3:16854250-16854269 | None:intergenic | 25.0% |
| !!! | CATACCCATGATTTTTTTTT+TGG | - | chr3_3:16854470-16854489 | Msa0444090:intron | 25.0% |
| ! | CTGACCAAAAAAAAAATCAT+GGG | + | chr3_3:16854477-16854496 | None:intergenic | 25.0% |
| ! | CATTGTAACCATCTTTAAAT+CGG | + | chr3_3:16854541-16854560 | None:intergenic | 25.0% |
| ! | TTACTAGAAAAAAAGGGAAT+TGG | + | chr3_3:16854620-16854639 | None:intergenic | 25.0% |
| !!! | AAAATGTCCCAATTTTTTTC+TGG | - | chr3_3:16854643-16854662 | Msa0444090:intron | 25.0% |
| ! | AAGAAGACCAGAAAAAAATT+GGG | + | chr3_3:16854653-16854672 | None:intergenic | 25.0% |
| ! | ACTTTAAATGCAGAATTTAG+AGG | + | chr3_3:16854752-16854771 | None:intergenic | 25.0% |
| ! | ATGAATTTGGGAAATTGATT+TGG | - | chr3_3:16854935-16854954 | Msa0444090:intron | 25.0% |
| ! | TCTAAATAAAAAACTGTGTG+AGG | + | chr3_3:16854972-16854991 | None:intergenic | 25.0% |
| !!! | CACAGTTTTTTATTTAGACT+CGG | - | chr3_3:16854974-16854993 | Msa0444090:intron | 25.0% |
| ! | GACAAAATTAAGACAAAACA+TGG | + | chr3_3:16855234-16855253 | None:intergenic | 25.0% |
| !! | ATTAAGTCTCTATTTGAAAC+TGG | - | chr3_3:16855347-16855366 | Msa0444090:CDS | 25.0% |
| ! | AAGTAGGAAATTATTTGATG+AGG | - | chr3_3:16855472-16855491 | Msa0444090:CDS | 25.0% |
| ! | ATCCTTTATATTGTGAAATG+AGG | - | chr3_3:16855616-16855635 | Msa0444090:CDS | 25.0% |
| ! | TTATATTACAGAAGCGATTA+TGG | - | chr3_3:16855687-16855706 | Msa0444090:five_prime_UTR | 25.0% |
| ! | ATTAAACATAACTGCAAAAC+TGG | - | chr3_3:16855806-16855825 | Msa0444090:five_prime_UTR | 25.0% |
| ! | CATAAACAAACAAGAGTAAT+GGG | + | chr3_3:16855951-16855970 | None:intergenic | 25.0% |
| ! | TCATAAACAAACAAGAGTAA+TGG | + | chr3_3:16855952-16855971 | None:intergenic | 25.0% |
| !! | GTTGTTGTTGTTTATGTAGT+TGG | + | chr3_3:16853399-16853418 | None:intergenic | 30.0% |
| AGGATTTGAAAGAAAGAAGT+TGG | + | chr3_3:16853435-16853454 | None:intergenic | 30.0% | |
| AAAGAGTGAAATGAAATGTG+TGG | + | chr3_3:16853458-16853477 | None:intergenic | 30.0% | |
| !!! | GGAATTTTTTGTTTCTGTTG+AGG | + | chr3_3:16853525-16853544 | None:intergenic | 30.0% |
| TCAATGAAATCATCTTTACG+TGG | - | chr3_3:16853841-16853860 | Msa0444090:CDS | 30.0% | |
| ! | ATGAAAAGGGTATGTTGTTT+CGG | - | chr3_3:16854019-16854038 | Msa0444090:CDS | 30.0% |
| !! | CGGTTAAGATGATTTTGAAA+GGG | - | chr3_3:16854121-16854140 | Msa0444090:intron | 30.0% |
| !! | AGATGATTTTGAAAGGGTTT+AGG | - | chr3_3:16854127-16854146 | Msa0444090:intron | 30.0% |
| !! | GATGATTTTGAAAGGGTTTA+GGG | - | chr3_3:16854128-16854147 | Msa0444090:intron | 30.0% |
| ! | TGATGAAAGAGATGTTTCTA+TGG | - | chr3_3:16854158-16854177 | Msa0444090:intron | 30.0% |
| GAACAAAAAGAAAGAAGGTT+TGG | + | chr3_3:16854213-16854232 | None:intergenic | 30.0% | |
| TTACGATAGATATGTCAAAG+TGG | - | chr3_3:16854375-16854394 | Msa0444090:intron | 30.0% | |
| CCTGACCAAAAAAAAAATCA+TGG | + | chr3_3:16854478-16854497 | None:intergenic | 30.0% | |
| !!! | CCATGATTTTTTTTTTGGTC+AGG | - | chr3_3:16854475-16854494 | Msa0444090:intron | 30.0% |
| CAAGAAGACCAGAAAAAAAT+TGG | + | chr3_3:16854654-16854673 | None:intergenic | 30.0% | |
| !! | CGATTTGATTTTAGTAGACA+GGG | - | chr3_3:16854674-16854693 | Msa0444090:intron | 30.0% |
| !!! | AGGGTTTTAAATTGTTCTTG+TGG | - | chr3_3:16854693-16854712 | Msa0444090:intron | 30.0% |
| !! | GTTTTAAATTGTTCTTGTGG+TGG | - | chr3_3:16854696-16854715 | Msa0444090:intron | 30.0% |
| ATTGGGCAAAATCAATATGT+GGG | + | chr3_3:16854813-16854832 | None:intergenic | 30.0% | |
| AATTGGGCAAAATCAATATG+TGG | + | chr3_3:16854814-16854833 | None:intergenic | 30.0% | |
| TCTGATATCAAATTAACAGC+AGG | - | chr3_3:16855049-16855068 | Msa0444090:intron | 30.0% | |
| TTAAGACAAAACATGGACAT+AGG | + | chr3_3:16855227-16855246 | None:intergenic | 30.0% | |
| TTGAAACTGGTGAATTGAAA+AGG | - | chr3_3:16855360-16855379 | Msa0444090:CDS | 30.0% | |
| GAATTGAAAAGGATTCTTGA+AGG | - | chr3_3:16855371-16855390 | Msa0444090:CDS | 30.0% | |
| AAATTATTTGATGAGGACGA+AGG | - | chr3_3:16855479-16855498 | Msa0444090:CDS | 30.0% | |
| AATTATTTGATGAGGACGAA+GGG | - | chr3_3:16855480-16855499 | Msa0444090:CDS | 30.0% | |
| TGCCTCATTTCACAATATAA+AGG | + | chr3_3:16855621-16855640 | None:intergenic | 30.0% | |
| ACAAAACAAAACGATGTTCA+AGG | + | chr3_3:16855755-16855774 | None:intergenic | 30.0% | |
| ! | CATTCAACGAATTTCTAGAC+CGG | - | chr3_3:16853782-16853801 | Msa0444090:CDS | 35.0% |
| ! | GTAGAATTTGCTTAACGAAC+CGG | + | chr3_3:16853809-16853828 | None:intergenic | 35.0% |
| GGTTCGTTAAGCAAATTCTA+CGG | - | chr3_3:16853808-16853827 | Msa0444090:CDS | 35.0% | |
| AAGCAAATTCTACGGTTCAA+TGG | - | chr3_3:16853816-16853835 | Msa0444090:CDS | 35.0% | |
| ATCATCTTTACGTGGAAGAA+TGG | - | chr3_3:16853849-16853868 | Msa0444090:CDS | 35.0% | |
| TGTATTTGACGAGTTTGAGA+GGG | - | chr3_3:16854070-16854089 | Msa0444090:CDS | 35.0% | |
| AACGTTTGAGGATTGTAATG+CGG | - | chr3_3:16854101-16854120 | Msa0444090:intron | 35.0% | |
| ! | GCGGTTAAGATGATTTTGAA+AGG | - | chr3_3:16854120-16854139 | Msa0444090:intron | 35.0% |
| !! | TTTTGAAAGGGTTTAGGGTT+TGG | - | chr3_3:16854133-16854152 | Msa0444090:intron | 35.0% |
| ! | TTTGAAAGGGTTTAGGGTTT+GGG | - | chr3_3:16854134-16854153 | Msa0444090:intron | 35.0% |
| TGCTTTCAGAAAAGAATTGC+AGG | - | chr3_3:16854185-16854204 | Msa0444090:intron | 35.0% | |
| ACATGCATCAAGAAAATCGA+GGG | + | chr3_3:16854349-16854368 | None:intergenic | 35.0% | |
| AACATGCATCAAGAAAATCG+AGG | + | chr3_3:16854350-16854369 | None:intergenic | 35.0% | |
| !! | GCGATTTGATTTTAGTAGAC+AGG | - | chr3_3:16854673-16854692 | Msa0444090:intron | 35.0% |
| ! | AACCTTGAGTTGTCTAATCT+TGG | - | chr3_3:16854853-16854872 | Msa0444090:intron | 35.0% |
| AAAAATTCGCTGCAACTGTA+TGG | + | chr3_3:16855085-16855104 | None:intergenic | 35.0% | |
| ! | TTCGTTAGAGGAAAGTACAT+TGG | - | chr3_3:16855311-16855330 | Msa0444090:CDS | 35.0% |
| TTCTGTGAGTATGAAAACGA+GGG | - | chr3_3:16855578-16855597 | Msa0444090:CDS | 35.0% | |
| !!! | CTGTCATGGTTTTAAATTCC+AGG | + | chr3_3:16855719-16855738 | None:intergenic | 35.0% |
| ! | GGAATTTAAAACCATGACAG+TGG | - | chr3_3:16855719-16855738 | Msa0444090:five_prime_UTR | 35.0% |
| TCAGAGAATAGGAGGAAAAA+GGG | + | chr3_3:16855919-16855938 | None:intergenic | 35.0% | |
| ATCAGAGAATAGGAGGAAAA+AGG | + | chr3_3:16855920-16855939 | None:intergenic | 35.0% | |
| GAGTGAAATGAAATGTGTGG+AGG | + | chr3_3:16853455-16853474 | None:intergenic | 40.0% | |
| !! | CGAATTTTTCGAAGATGTCG+AGG | - | chr3_3:16853698-16853717 | Msa0444090:three_prime_UTR | 40.0% |
| CGGTCTAGAAATTCGTTGAA+TGG | + | chr3_3:16853784-16853803 | None:intergenic | 40.0% | |
| ! | TGGTTCGGAAGAAGATGAAA+AGG | - | chr3_3:16854005-16854024 | Msa0444090:CDS | 40.0% |
| GGTTCGGAAGAAGATGAAAA+GGG | - | chr3_3:16854006-16854025 | Msa0444090:CDS | 40.0% | |
| !! | AAAGGGTATGTTGTTTCGGT+TGG | - | chr3_3:16854023-16854042 | Msa0444090:CDS | 40.0% |
| GTGTATTTGACGAGTTTGAG+AGG | - | chr3_3:16854069-16854088 | Msa0444090:CDS | 40.0% | |
| AGGGATAAGAAGAACGTTTG+AGG | - | chr3_3:16854089-16854108 | Msa0444090:intron | 40.0% | |
| ATGTCAGAGTCATCGTGATT+CGG | - | chr3_3:16854285-16854304 | Msa0444090:intron | 40.0% | |
| ! | CTGCATTTAAAGTTGTCACG+AGG | - | chr3_3:16854759-16854778 | Msa0444090:intron | 40.0% |
| GACCAAGATTAGACAACTCA+AGG | + | chr3_3:16854858-16854877 | None:intergenic | 40.0% | |
| TTTCCTCTAACGAACACTTG+AGG | + | chr3_3:16855305-16855324 | None:intergenic | 40.0% | |
| ! | GTTAGAGGAAAGTACATTGG+TGG | - | chr3_3:16855314-16855333 | Msa0444090:CDS | 40.0% |
| ATACCTTGTGAGAATTGCAG+TGG | - | chr3_3:16855449-16855468 | Msa0444090:CDS | 40.0% | |
| AGGGTTGTTGAAAAGATGCT+TGG | - | chr3_3:16855499-16855518 | Msa0444090:CDS | 40.0% | |
| ! | GCAATGAGAATGGACTTGTA+AGG | - | chr3_3:16855525-16855544 | Msa0444090:CDS | 40.0% |
| ACAGAACATCATTCCAGAAC+AGG | + | chr3_3:16855564-16855583 | None:intergenic | 40.0% | |
| GTTCTGTGAGTATGAAAACG+AGG | - | chr3_3:16855577-16855596 | Msa0444090:CDS | 40.0% | |
| ACACAACATCAGAGAATAGG+AGG | + | chr3_3:16855927-16855946 | None:intergenic | 40.0% | |
| GGAACACAACATCAGAGAAT+AGG | + | chr3_3:16855930-16855949 | None:intergenic | 40.0% | |
| ACGTGTGCATCGTGTTTGAT+CGG | + | chr3_3:16853738-16853757 | None:intergenic | 45.0% | |
| ! | AACGAATTTCTAGACCGGTC+CGG | - | chr3_3:16853787-16853806 | Msa0444090:CDS | 45.0% |
| ATTTGCTTAACGAACCGGAC+CGG | + | chr3_3:16853804-16853823 | None:intergenic | 45.0% | |
| AAGTTGTCACGAGGTCTTGA+TGG | - | chr3_3:16854768-16854787 | Msa0444090:intron | 45.0% | |
| TCGCTGCAACTGTATGGATA+TGG | + | chr3_3:16855079-16855098 | None:intergenic | 45.0% | |
| ATTGTTGCTGCAGTCTGTGA+TGG | - | chr3_3:16855259-16855278 | Msa0444090:CDS | 45.0% | |
| TTGTTGCTGCAGTCTGTGAT+GGG | - | chr3_3:16855260-16855279 | Msa0444090:CDS | 45.0% | |
| ACAAAGCCAGGCTTCATCTT+GGG | + | chr3_3:16855401-16855420 | None:intergenic | 45.0% | |
| AACAAAGCCAGGCTTCATCT+TGG | + | chr3_3:16855402-16855421 | None:intergenic | 45.0% | |
| CTTCCACTGCAATTCTCACA+AGG | + | chr3_3:16855455-16855474 | None:intergenic | 45.0% | |
| GTGAGAATTGCAGTGGAAGT+AGG | - | chr3_3:16855456-16855475 | Msa0444090:CDS | 45.0% | |
| TGCTTGGAGTGCAATGAGAA+TGG | - | chr3_3:16855515-16855534 | Msa0444090:CDS | 45.0% | |
| ! | TCTTTTGTCGTCGTCGTCGT+TGG | + | chr3_3:16853904-16853923 | None:intergenic | 50.0% |
| TCTTCTTCCGAACCAGAACG+CGG | + | chr3_3:16854000-16854019 | None:intergenic | 50.0% | |
| !! | GGGTATGTTGTTTCGGTTGG+CGG | - | chr3_3:16854026-16854045 | Msa0444090:CDS | 50.0% |
| GGATGCTGATGATCGGATTG+TGG | - | chr3_3:16854047-16854066 | Msa0444090:CDS | 50.0% | |
| CTGCCTCAAGTGTTCGTTAG+AGG | - | chr3_3:16855299-16855318 | Msa0444090:CDS | 50.0% | |
| ! | GGTTTTCCCAAGATGAAGCC+TGG | - | chr3_3:16855392-16855411 | Msa0444090:CDS | 50.0% |
| CAACTCTCGCAAACAAAGCC+AGG | + | chr3_3:16855413-16855432 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGAGTTG+TGG | - | chr3_3:16855413-16855432 | Msa0444090:CDS | 50.0% |
| ATTCCAGAACAGGCGCAACA+AGG | + | chr3_3:16855554-16855573 | None:intergenic | 50.0% | |
| AAGCGATTATGGTTGCAGCC+TGG | - | chr3_3:16855698-16855717 | Msa0444090:five_prime_UTR | 50.0% | |
| GCGCAAAAACACCACTGTCA+TGG | + | chr3_3:16855733-16855752 | None:intergenic | 50.0% | |
| ACCTTCTTCCGAACCACGTG+CGG | - | chr3_3:16853954-16853973 | Msa0444090:CDS | 55.0% | |
| TTAGGTCAGAAGCCGCGTTC+TGG | - | chr3_3:16853985-16854004 | Msa0444090:CDS | 55.0% | |
| ! | TCAGAAGCCGCGTTCTGGTT+CGG | - | chr3_3:16853990-16854009 | Msa0444090:CDS | 55.0% |
| ! | GGTTGGCGGATGCTGATGAT+CGG | - | chr3_3:16854040-16854059 | Msa0444090:CDS | 55.0% |
| TGTCCTTGTTGCGCCTGTTC+TGG | - | chr3_3:16855548-16855567 | Msa0444090:CDS | 55.0% | |
| CTTCGAAGCCGCACGTGGTT+CGG | + | chr3_3:16853965-16853984 | None:intergenic | 60.0% | |
| CCTAACTTCGAAGCCGCACG+TGG | + | chr3_3:16853970-16853989 | None:intergenic | 60.0% | |
| CCACGTGCGGCTTCGAAGTT+AGG | - | chr3_3:16853967-16853986 | Msa0444090:CDS | 60.0% | |
| !! | GCTGCAGTCTGTGATGGGTG+AGG | - | chr3_3:16855265-16855284 | Msa0444090:CDS | 60.0% |
| GCGAGAGTTGTGGCGATGCT+AGG | - | chr3_3:16855423-16855442 | Msa0444090:CDS | 60.0% | |
| ! | GCCGCACGTGGTTCGGAAGA+AGG | + | chr3_3:16853958-16853977 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 16853388 | 16855979 | 16853388 | ID=Msa0444090;Name=Msa0444090 |
| chr3_3 | mRNA | 16853388 | 16855979 | 16853388 | ID=Msa0444090-mRNA-1;Parent=Msa0444090;Name=Msa0444090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=324|1|1|1|1|1|2|348|284 |
| chr3_3 | exon | 16853388 | 16854095 | 16853388 | ID=Msa0444090-mRNA-1:exon:3503;Parent=Msa0444090-mRNA-1 |
| chr3_3 | exon | 16855161 | 16855979 | 16855161 | ID=Msa0444090-mRNA-1:exon:3502;Parent=Msa0444090-mRNA-1 |
| chr3_3 | five_prime_UTR | 16855656 | 16855979 | 16855656 | ID=Msa0444090-mRNA-1:five_prime_utr;Parent=Msa0444090-mRNA-1 |
| chr3_3 | CDS | 16855161 | 16855655 | 16855161 | ID=Msa0444090-mRNA-1:cds;Parent=Msa0444090-mRNA-1 |
| chr3_3 | CDS | 16853736 | 16854095 | 16853736 | ID=Msa0444090-mRNA-1:cds;Parent=Msa0444090-mRNA-1 |
| chr3_3 | three_prime_UTR | 16853388 | 16853735 | 16853388 | ID=Msa0444090-mRNA-1:three_prime_utr;Parent=Msa0444090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
