Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014790 | XP_013448135.1 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 4.98e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014790 | sp|Q8L8Q3|LBD25_ARATH | 84.071 | 113 | 18 | 0 | 5 | 117 | 33 | 145 | 2.54e-67 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014790 | A0A072TXJ1 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 2.38e-122 | 353 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1014790 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623360 | Msa1014790 | 0.809169 | 2.160891e-50 | -8.615850e-47 |
| Msa0729780 | Msa1014790 | 0.802833 | 4.650267e-49 | -8.615850e-47 |
| Msa0734190 | Msa1014790 | 0.815384 | 9.501816e-52 | -8.615850e-47 |
| Msa0198140 | Msa1014790 | 0.819148 | 1.352120e-52 | -8.615850e-47 |
| Msa0198220 | Msa1014790 | 0.817172 | 3.784135e-52 | -8.615850e-47 |
| Msa0218480 | Msa1014790 | 0.804903 | 1.727733e-49 | -8.615850e-47 |
| Msa0385280 | Msa1014790 | 0.822493 | 2.300229e-53 | -8.615850e-47 |
| Msa1014790 | Msa1055710 | 0.861541 | 9.539876e-64 | -8.615850e-47 |
| Msa1014790 | Msa1081530 | 0.803826 | 2.896607e-49 | -8.615850e-47 |
| Msa1014790 | Msa1216700 | 0.802405 | 5.699919e-49 | -8.615850e-47 |
| Msa1014790 | Msa1262740 | 0.813090 | 3.052244e-51 | -8.615850e-47 |
| Msa1014790 | Msa1263610 | 0.813775 | 2.157657e-51 | -8.615850e-47 |
| Msa1014790 | Msa1329660 | 0.802902 | 4.499707e-49 | -8.615850e-47 |
| Msa0258280 | Msa1014790 | 0.800339 | 1.510018e-48 | -8.615850e-47 |
| Msa0278340 | Msa1014790 | 0.819749 | 9.864706e-53 | -8.615850e-47 |
| Msa0523140 | Msa1014790 | 0.830183 | 3.389835e-55 | -8.615850e-47 |
| Msa0523150 | Msa1014790 | 0.803842 | 2.873863e-49 | -8.615850e-47 |
| Msa0549550 | Msa1014790 | 0.818865 | 1.567964e-52 | -8.615850e-47 |
| Msa0578890 | Msa1014790 | 0.801932 | 7.130936e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014790 | MtrunA17_Chr7g0227511 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 4.58e-126 | 353 |
| Msa1014790 | MtrunA17_Chr6g0449641 | 89.091 | 110 | 12 | 0 | 4 | 113 | 2 | 111 | 3.92e-69 | 208 |
| Msa1014790 | MtrunA17_Chr3g0117121 | 86.087 | 115 | 15 | 1 | 1 | 115 | 1 | 114 | 5.13e-69 | 209 |
| Msa1014790 | MtrunA17_Chr6g0449651 | 83.478 | 115 | 19 | 0 | 1 | 115 | 57 | 171 | 1.01e-67 | 206 |
| Msa1014790 | MtrunA17_Chr4g0058651 | 64.327 | 171 | 46 | 3 | 1 | 156 | 1 | 171 | 1.73e-67 | 205 |
| Msa1014790 | MtrunA17_Chr8g0353981 | 64.844 | 128 | 39 | 1 | 6 | 133 | 2 | 123 | 5.97e-50 | 162 |
| Msa1014790 | MtrunA17_Chr5g0437571 | 53.020 | 149 | 66 | 1 | 9 | 157 | 4 | 148 | 1.32e-49 | 159 |
| Msa1014790 | MtrunA17_Chr5g0402611 | 66.364 | 110 | 37 | 0 | 5 | 114 | 2 | 111 | 3.94e-49 | 162 |
| Msa1014790 | MtrunA17_Chr3g0115431 | 66.667 | 111 | 37 | 0 | 5 | 115 | 3 | 113 | 7.67e-48 | 156 |
| Msa1014790 | MtrunA17_Chr2g0311601 | 63.462 | 104 | 38 | 0 | 10 | 113 | 12 | 115 | 1.89e-47 | 153 |
| Msa1014790 | MtrunA17_Chr5g0437401 | 50.000 | 150 | 69 | 1 | 8 | 157 | 8 | 151 | 5.16e-47 | 153 |
| Msa1014790 | MtrunA17_Chr4g0043421 | 63.462 | 104 | 38 | 0 | 10 | 113 | 14 | 117 | 6.97e-47 | 152 |
| Msa1014790 | MtrunA17_Chr3g0097221 | 66.667 | 108 | 36 | 0 | 8 | 115 | 4 | 111 | 6.21e-46 | 154 |
| Msa1014790 | MtrunA17_Chr3g0114061 | 59.829 | 117 | 43 | 1 | 8 | 124 | 5 | 117 | 1.94e-45 | 148 |
| Msa1014790 | MtrunA17_Chr3g0113891 | 67.010 | 97 | 32 | 0 | 8 | 104 | 11 | 107 | 1.20e-44 | 147 |
| Msa1014790 | MtrunA17_Chr3g0106101 | 60.577 | 104 | 41 | 0 | 9 | 112 | 5 | 108 | 2.73e-44 | 146 |
| Msa1014790 | MtrunA17_Chr5g0438091 | 61.682 | 107 | 41 | 0 | 8 | 114 | 36 | 142 | 3.85e-44 | 146 |
| Msa1014790 | MtrunA17_Chr3g0129071 | 61.905 | 105 | 40 | 0 | 10 | 114 | 46 | 150 | 4.71e-44 | 147 |
| Msa1014790 | MtrunA17_Chr7g0260971 | 60.000 | 115 | 42 | 2 | 1 | 111 | 1 | 115 | 2.21e-40 | 137 |
| Msa1014790 | MtrunA17_Chr4g0030001 | 54.464 | 112 | 50 | 1 | 2 | 112 | 15 | 126 | 5.92e-40 | 135 |
| Msa1014790 | MtrunA17_Chr5g0432451 | 63.810 | 105 | 38 | 0 | 10 | 114 | 42 | 146 | 2.08e-39 | 135 |
| Msa1014790 | MtrunA17_Chr8g0351701 | 59.048 | 105 | 42 | 1 | 11 | 114 | 23 | 127 | 1.17e-38 | 133 |
| Msa1014790 | MtrunA17_Chr1g0184281 | 57.265 | 117 | 45 | 2 | 1 | 112 | 1 | 117 | 3.73e-38 | 131 |
| Msa1014790 | MtrunA17_Chr1g0200201 | 49.219 | 128 | 51 | 2 | 12 | 125 | 73 | 200 | 4.20e-38 | 132 |
| Msa1014790 | MtrunA17_Chr8g0351721 | 59.804 | 102 | 40 | 1 | 11 | 111 | 18 | 119 | 2.99e-35 | 124 |
| Msa1014790 | MtrunA17_Chr7g0245871 | 60.417 | 96 | 37 | 1 | 11 | 105 | 27 | 122 | 8.75e-35 | 124 |
| Msa1014790 | MtrunA17_Chr7g0225111 | 50.980 | 102 | 50 | 0 | 10 | 111 | 4 | 105 | 2.18e-34 | 119 |
| Msa1014790 | MtrunA17_Chr5g0435641 | 55.670 | 97 | 42 | 1 | 10 | 105 | 6 | 102 | 2.16e-33 | 118 |
| Msa1014790 | MtrunA17_Chr6g0460951 | 51.923 | 104 | 49 | 1 | 10 | 112 | 39 | 142 | 1.16e-32 | 117 |
| Msa1014790 | MtrunA17_Chr8g0374601 | 50.000 | 104 | 52 | 0 | 11 | 114 | 26 | 129 | 1.22e-32 | 119 |
| Msa1014790 | MtrunA17_Chr7g0261031 | 57.143 | 98 | 41 | 1 | 8 | 104 | 5 | 102 | 1.77e-32 | 117 |
| Msa1014790 | MtrunA17_Chr5g0444351 | 43.284 | 134 | 63 | 2 | 12 | 145 | 6 | 126 | 4.86e-32 | 113 |
| Msa1014790 | MtrunA17_Chr1g0184271 | 54.737 | 95 | 42 | 1 | 11 | 104 | 12 | 106 | 1.12e-31 | 115 |
| Msa1014790 | MtrunA17_Chr8g0374591 | 46.154 | 104 | 56 | 0 | 11 | 114 | 8 | 111 | 8.60e-30 | 107 |
| Msa1014790 | MtrunA17_Chr7g0245861 | 57.609 | 92 | 36 | 2 | 9 | 97 | 10 | 101 | 3.85e-29 | 106 |
| Msa1014790 | MtrunA17_Chr4g0059901 | 46.000 | 100 | 54 | 0 | 12 | 111 | 11 | 110 | 5.93e-28 | 106 |
| Msa1014790 | MtrunA17_Chr6g0452661 | 44.898 | 98 | 53 | 1 | 9 | 105 | 7 | 104 | 7.42e-28 | 105 |
| Msa1014790 | MtrunA17_Chr6g0460941 | 51.136 | 88 | 42 | 1 | 11 | 97 | 7 | 94 | 8.14e-27 | 98.6 |
| Msa1014790 | MtrunA17_Chr6g0452671 | 43.000 | 100 | 57 | 0 | 8 | 107 | 8 | 107 | 1.26e-26 | 101 |
| Msa1014790 | MtrunA17_Chr8g0374581 | 46.667 | 105 | 55 | 1 | 11 | 114 | 8 | 112 | 3.03e-26 | 101 |
| Msa1014790 | MtrunA17_Chr6g0452691 | 44.762 | 105 | 57 | 1 | 8 | 111 | 6 | 110 | 9.61e-26 | 98.6 |
| Msa1014790 | MtrunA17_Chr8g0342351 | 42.000 | 100 | 58 | 0 | 12 | 111 | 13 | 112 | 3.66e-24 | 96.3 |
| Msa1014790 | MtrunA17_Chr4g0055441 | 38.462 | 104 | 62 | 2 | 12 | 114 | 3 | 105 | 9.21e-23 | 90.1 |
| Msa1014790 | MtrunA17_Chr4g0040831 | 44.086 | 93 | 52 | 0 | 12 | 104 | 16 | 108 | 2.57e-22 | 90.1 |
| Msa1014790 | MtrunA17_Chr2g0330201 | 41.667 | 96 | 56 | 0 | 12 | 107 | 20 | 115 | 5.52e-21 | 88.6 |
| Msa1014790 | MtrunA17_Chr5g0439111 | 32.727 | 165 | 82 | 5 | 9 | 157 | 7 | 158 | 6.95e-20 | 84.3 |
| Msa1014790 | MtrunA17_Chr2g0326041 | 62.000 | 50 | 19 | 0 | 10 | 59 | 32 | 81 | 3.72e-18 | 76.3 |
| Msa1014790 | MtrunA17_Chr4g0046201 | 36.364 | 88 | 56 | 0 | 12 | 99 | 7 | 94 | 8.26e-18 | 79.7 |
| Msa1014790 | MtrunA17_Chr2g0326051 | 57.895 | 57 | 24 | 0 | 56 | 112 | 5 | 61 | 2.49e-15 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014790 | AT3G27650.1 | 84.071 | 113 | 18 | 0 | 5 | 117 | 33 | 145 | 2.58e-68 | 207 |
| Msa1014790 | AT5G63090.4 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 2.26e-67 | 205 |
| Msa1014790 | AT5G63090.3 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 2.26e-67 | 205 |
| Msa1014790 | AT5G63090.2 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 2.26e-67 | 205 |
| Msa1014790 | AT5G63090.1 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 2.26e-67 | 205 |
| Msa1014790 | AT1G65620.1 | 68.966 | 116 | 34 | 1 | 1 | 116 | 1 | 114 | 1.08e-49 | 160 |
| Msa1014790 | AT1G65620.4 | 68.966 | 116 | 34 | 1 | 1 | 116 | 1 | 114 | 1.08e-49 | 160 |
| Msa1014790 | AT1G65620.3 | 68.966 | 116 | 34 | 1 | 1 | 116 | 1 | 114 | 1.08e-49 | 160 |
| Msa1014790 | AT1G65620.5 | 68.966 | 116 | 34 | 1 | 1 | 116 | 1 | 114 | 1.08e-49 | 160 |
| Msa1014790 | AT1G65620.2 | 68.966 | 116 | 34 | 1 | 1 | 116 | 1 | 114 | 1.08e-49 | 160 |
| Msa1014790 | AT5G66870.1 | 65.217 | 115 | 36 | 1 | 1 | 115 | 1 | 111 | 3.08e-49 | 163 |
| Msa1014790 | AT2G30130.1 | 62.281 | 114 | 39 | 1 | 9 | 122 | 6 | 115 | 1.34e-47 | 155 |
| Msa1014790 | AT1G16530.1 | 61.607 | 112 | 42 | 1 | 10 | 120 | 13 | 124 | 8.06e-44 | 144 |
| Msa1014790 | AT1G31320.1 | 59.322 | 118 | 46 | 1 | 10 | 125 | 12 | 129 | 1.07e-43 | 144 |
| Msa1014790 | AT2G23660.2 | 59.813 | 107 | 43 | 0 | 8 | 114 | 2 | 108 | 1.29e-43 | 149 |
| Msa1014790 | AT2G23660.3 | 59.813 | 107 | 43 | 0 | 8 | 114 | 2 | 108 | 1.29e-43 | 149 |
| Msa1014790 | AT2G23660.1 | 59.813 | 107 | 43 | 0 | 8 | 114 | 2 | 108 | 1.29e-43 | 149 |
| Msa1014790 | AT2G30340.2 | 55.932 | 118 | 47 | 1 | 10 | 122 | 52 | 169 | 1.07e-42 | 145 |
| Msa1014790 | AT2G30340.1 | 55.932 | 118 | 47 | 1 | 10 | 122 | 51 | 168 | 1.11e-42 | 145 |
| Msa1014790 | AT3G11090.1 | 59.259 | 108 | 44 | 0 | 8 | 115 | 8 | 115 | 3.63e-42 | 140 |
| Msa1014790 | AT1G07900.1 | 59.223 | 103 | 42 | 0 | 10 | 112 | 32 | 134 | 3.67e-41 | 139 |
| Msa1014790 | AT2G28500.1 | 59.223 | 103 | 42 | 0 | 10 | 112 | 54 | 156 | 1.18e-40 | 139 |
| Msa1014790 | AT2G40470.2 | 61.905 | 105 | 40 | 0 | 10 | 114 | 19 | 123 | 1.12e-39 | 135 |
| Msa1014790 | AT2G40470.1 | 61.905 | 105 | 40 | 0 | 10 | 114 | 44 | 148 | 2.96e-39 | 135 |
| Msa1014790 | AT3G26660.1 | 51.304 | 115 | 55 | 1 | 12 | 125 | 6 | 120 | 6.82e-39 | 130 |
| Msa1014790 | AT3G26620.1 | 56.000 | 100 | 44 | 0 | 12 | 111 | 6 | 105 | 1.27e-38 | 130 |
| Msa1014790 | AT2G42430.1 | 55.372 | 121 | 49 | 2 | 1 | 116 | 1 | 121 | 1.96e-37 | 130 |
| Msa1014790 | AT3G03760.1 | 57.692 | 104 | 43 | 1 | 10 | 112 | 50 | 153 | 6.06e-37 | 130 |
| Msa1014790 | AT4G00220.1 | 60.606 | 99 | 38 | 1 | 14 | 111 | 20 | 118 | 4.62e-36 | 127 |
| Msa1014790 | AT4G00210.1 | 55.357 | 112 | 49 | 1 | 1 | 111 | 1 | 112 | 7.87e-36 | 126 |
| Msa1014790 | AT2G45420.1 | 60.606 | 99 | 38 | 1 | 14 | 111 | 40 | 138 | 9.08e-36 | 127 |
| Msa1014790 | AT5G06080.1 | 51.402 | 107 | 51 | 1 | 10 | 115 | 6 | 112 | 9.66e-34 | 119 |
| Msa1014790 | AT2G45410.1 | 42.771 | 166 | 87 | 4 | 14 | 178 | 19 | 177 | 6.72e-33 | 117 |
| Msa1014790 | AT2G31310.1 | 55.208 | 96 | 42 | 1 | 10 | 104 | 6 | 101 | 1.10e-32 | 117 |
| Msa1014790 | AT3G58190.1 | 55.208 | 96 | 42 | 1 | 11 | 105 | 11 | 106 | 1.51e-32 | 117 |
| Msa1014790 | AT2G42440.1 | 52.525 | 99 | 46 | 1 | 8 | 105 | 4 | 102 | 4.20e-32 | 117 |
| Msa1014790 | AT3G50510.1 | 47.170 | 106 | 56 | 0 | 9 | 114 | 10 | 115 | 1.97e-29 | 108 |
| Msa1014790 | AT3G50510.2 | 47.170 | 106 | 56 | 0 | 9 | 114 | 10 | 115 | 1.97e-29 | 108 |
| Msa1014790 | AT5G35900.1 | 41.071 | 112 | 66 | 0 | 12 | 123 | 6 | 117 | 1.31e-26 | 102 |
| Msa1014790 | AT3G47870.1 | 39.806 | 103 | 62 | 0 | 12 | 114 | 37 | 139 | 3.49e-25 | 100 |
| Msa1014790 | AT3G13850.1 | 43.617 | 94 | 53 | 0 | 12 | 105 | 37 | 130 | 5.78e-25 | 99.0 |
| Msa1014790 | AT1G72980.1 | 42.056 | 107 | 62 | 0 | 1 | 107 | 3 | 109 | 2.24e-23 | 93.6 |
| Msa1014790 | AT1G06280.1 | 41.667 | 96 | 55 | 1 | 9 | 104 | 22 | 116 | 2.18e-19 | 82.8 |
| Msa1014790 | AT4G22700.1 | 36.937 | 111 | 68 | 2 | 12 | 121 | 6 | 115 | 1.17e-17 | 78.2 |
| Msa1014790 | AT2G19820.1 | 38.202 | 89 | 54 | 1 | 10 | 97 | 11 | 99 | 1.13e-15 | 70.9 |
| Msa1014790 | AT5G15060.1 | 43.243 | 74 | 38 | 2 | 12 | 82 | 18 | 90 | 7.96e-14 | 66.6 |
Find 47 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATGTTCACAAAATATT+TGG | 0.149406 | 7_1:+24416243 | Msa1014790:CDS |
| GCAAATTTCTGTGGCTCTTC+TGG | 0.194109 | 7_1:-24416222 | None:intergenic |
| AGGATAAAAGATCCAGTTTA+TGG | 0.245304 | 7_1:+24416354 | Msa1014790:CDS |
| GGCTCTTCTGGTGGGAAATA+TGG | 0.297872 | 7_1:-24416210 | None:intergenic |
| TAGTAGAATCAAGTTCCTTT+TGG | 0.319682 | 7_1:-24416422 | None:intergenic |
| GGAGCCTAAGAACTTGTCTT+TGG | 0.328487 | 7_1:-24416401 | None:intergenic |
| TATCCTTGCCTCGGCTTCAT+AGG | 0.346381 | 7_1:-24416337 | None:intergenic |
| TCGTCGTACTGCCGCCTTAG+TGG | 0.390582 | 7_1:-24417753 | None:intergenic |
| GCACCAACACAACCATAAAC+TGG | 0.396732 | 7_1:-24416366 | None:intergenic |
| TCCTCCAAAGACAAGTTCTT+AGG | 0.431787 | 7_1:+24416397 | Msa1014790:CDS |
| TGTTCCGATGTTGGTGTCAA+TGG | 0.433840 | 7_1:-24417670 | None:intergenic |
| TTGTCTTTGGAGGACTGAAA+TGG | 0.450349 | 7_1:-24416388 | None:intergenic |
| TATGGAGCAAATATGCAATC+TGG | 0.454516 | 7_1:-24416192 | None:intergenic |
| AATTTCTGTGGCTCTTCTGG+TGG | 0.462397 | 7_1:-24416219 | None:intergenic |
| ACAAGGATCGGTGGTGAAGA+TGG | 0.475213 | 7_1:+24416504 | Msa1014790:CDS |
| GATGGAGGCGGTTCTTCTCT+CGG | 0.486085 | 7_1:+24416522 | Msa1014790:CDS |
| GCCTAAGAACTTGTCTTTGG+AGG | 0.492984 | 7_1:-24416398 | None:intergenic |
| TGTTGTCTCTGTTCCGATGT+TGG | 0.503885 | 7_1:-24417679 | None:intergenic |
| TCTCGGTCAATCTCCTCCTC+CGG | 0.512178 | 7_1:+24416539 | Msa1014790:CDS |
| ACAAGTTCTTAGGCTCCAAA+AGG | 0.517159 | 7_1:+24416407 | Msa1014790:CDS |
| TCATTATTGTTCCAAGGAGA+AGG | 0.524865 | 7_1:-24416573 | None:intergenic |
| TGAAGTGCAACAACATCAAA+GGG | 0.528377 | 7_1:+24416293 | Msa1014790:CDS |
| GTAGCTGCGATATCATGATT+CGG | 0.531589 | 7_1:-24416483 | None:intergenic |
| GATGGTTATCACACGGGAGG+AGG | 0.542341 | 7_1:+24416606 | Msa1014790:CDS |
| ATGAAGTGCAACAACATCAA+AGG | 0.561125 | 7_1:+24416292 | Msa1014790:CDS |
| ATTTCTGTGGCTCTTCTGGT+GGG | 0.562695 | 7_1:-24416218 | None:intergenic |
| CTCTCTTGCCTATGAAGCCG+AGG | 0.568060 | 7_1:+24416329 | Msa1014790:CDS |
| ATCATGATATCGCAGCTACA+AGG | 0.574170 | 7_1:+24416487 | Msa1014790:CDS |
| GATCCAGTTTATGGTTGTGT+TGG | 0.578996 | 7_1:+24416363 | Msa1014790:CDS |
| AGTGGATCATTATTGTTCCA+AGG | 0.579950 | 7_1:-24416579 | None:intergenic |
| TGAACATTTGCAAATTTCTG+TGG | 0.582165 | 7_1:-24416231 | None:intergenic |
| TTGCCTATGAAGCCGAGGCA+AGG | 0.591021 | 7_1:+24416334 | Msa1014790:CDS |
| AATAATGATCCACTTGGCGA+TGG | 0.592711 | 7_1:+24416588 | Msa1014790:CDS |
| TGGAACAATAATGATCCACT+TGG | 0.604864 | 7_1:+24416582 | Msa1014790:CDS |
| GATATCGCAGCTACAAGGAT+CGG | 0.627747 | 7_1:+24416492 | Msa1014790:CDS |
| AGCACATGGTGAATTTGAGT+AGG | 0.632061 | 7_1:-24416139 | None:intergenic |
| ATCGGTGGTGAAGATGGAGG+CGG | 0.635235 | 7_1:+24416510 | Msa1014790:CDS |
| ATCGCAGCTACAAGGATCGG+TGG | 0.645471 | 7_1:+24416495 | Msa1014790:CDS |
| AGGACCATTGACACCAACAT+CGG | 0.656208 | 7_1:+24417666 | Msa1014790:CDS |
| CTTGGCGATGGTTATCACAC+GGG | 0.658586 | 7_1:+24416600 | Msa1014790:CDS |
| ACTTGGCGATGGTTATCACA+CGG | 0.661040 | 7_1:+24416599 | Msa1014790:CDS |
| GGCGATGGTTATCACACGGG+AGG | 0.663949 | 7_1:+24416603 | Msa1014790:CDS |
| GTGTGATAACCATCGCCAAG+TGG | 0.665247 | 7_1:-24416597 | None:intergenic |
| AGGATCGGTGGTGAAGATGG+AGG | 0.666085 | 7_1:+24416507 | Msa1014790:CDS |
| ACGATGATACGAGGTGTGGT+CGG | 0.689644 | 7_1:+24417772 | Msa1014790:CDS |
| TACGACGATGATACGAGGTG+TGG | 0.697659 | 7_1:+24417768 | Msa1014790:CDS |
| GGCAGTACGACGATGATACG+AGG | 0.701864 | 7_1:+24417763 | Msa1014790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTAATTTGAAGAA+GGG | + | chr7_1:24416726-24416745 | Msa1014790:intron | 10.0% |
| !!! | TTATTATTTAATTTGAAGAA+GGG | + | chr7_1:24416726-24416745 | Msa1014790:intron | 10.0% |
| !! | TAAATAATAAGAACCTTAAA+GGG | - | chr7_1:24416716-24416735 | None:intergenic | 15.0% |
| !! | TTAAATAATAAGAACCTTAA+AGG | - | chr7_1:24416717-24416736 | None:intergenic | 15.0% |
| !!! | CTTATTATTTAATTTGAAGA+AGG | + | chr7_1:24416725-24416744 | Msa1014790:intron | 15.0% |
| !!! | TATTATTTAATTTGAAGAAG+GGG | + | chr7_1:24416727-24416746 | Msa1014790:intron | 15.0% |
| !!! | ATAAACATACCAATTTTTTT+AGG | + | chr7_1:24417636-24417655 | Msa1014790:intron | 15.0% |
| !!! | TAAACATACCAATTTTTTTA+GGG | + | chr7_1:24417637-24417656 | Msa1014790:intron | 15.0% |
| !! | TAAATAATAAGAACCTTAAA+GGG | - | chr7_1:24416716-24416735 | None:intergenic | 15.0% |
| !! | TTAAATAATAAGAACCTTAA+AGG | - | chr7_1:24416717-24416736 | None:intergenic | 15.0% |
| !!! | CTTATTATTTAATTTGAAGA+AGG | + | chr7_1:24416725-24416744 | Msa1014790:intron | 15.0% |
| !!! | TATTATTTAATTTGAAGAAG+GGG | + | chr7_1:24416727-24416746 | Msa1014790:intron | 15.0% |
| !!! | ATAAACATACCAATTTTTTT+AGG | + | chr7_1:24417636-24417655 | Msa1014790:intron | 15.0% |
| !!! | TAAACATACCAATTTTTTTA+GGG | + | chr7_1:24417637-24417656 | Msa1014790:intron | 15.0% |
| !! | TCATTATAGATTATAAACGA+GGG | - | chr7_1:24416675-24416694 | None:intergenic | 20.0% |
| !! | ATCATTATAGATTATAAACG+AGG | - | chr7_1:24416676-24416695 | None:intergenic | 20.0% |
| !! | ATAGACATATATAAACCATA+CGG | - | chr7_1:24416808-24416827 | None:intergenic | 20.0% |
| !! | CTATAACAGAAGAATTTAAA+GGG | - | chr7_1:24417512-24417531 | None:intergenic | 20.0% |
| !! | ACTATAACAGAAGAATTTAA+AGG | - | chr7_1:24417513-24417532 | None:intergenic | 20.0% |
| !!! | AAACATACCAATTTTTTTAG+GGG | + | chr7_1:24417638-24417657 | Msa1014790:intron | 20.0% |
| !! | TCATTATAGATTATAAACGA+GGG | - | chr7_1:24416675-24416694 | None:intergenic | 20.0% |
| !! | ATCATTATAGATTATAAACG+AGG | - | chr7_1:24416676-24416695 | None:intergenic | 20.0% |
| !! | ATAGACATATATAAACCATA+CGG | - | chr7_1:24416808-24416827 | None:intergenic | 20.0% |
| !! | CTATAACAGAAGAATTTAAA+GGG | - | chr7_1:24417512-24417531 | None:intergenic | 20.0% |
| !! | ACTATAACAGAAGAATTTAA+AGG | - | chr7_1:24417513-24417532 | None:intergenic | 20.0% |
| !!! | AAACATACCAATTTTTTTAG+GGG | + | chr7_1:24417638-24417657 | Msa1014790:intron | 20.0% |
| ! | GCAAATGTTCACAAAATATT+TGG | + | chr7_1:24416243-24416262 | Msa1014790:CDS | 25.0% |
| ! | TACTGAAACAACAAAGATAA+TGG | + | chr7_1:24416918-24416937 | Msa1014790:intron | 25.0% |
| !! | TTTCTGTTTAGGATTTGTAT+GGG | - | chr7_1:24417048-24417067 | None:intergenic | 25.0% |
| !!! | TTTTCTGTTTAGGATTTGTA+TGG | - | chr7_1:24417049-24417068 | None:intergenic | 25.0% |
| ! | ATTAGAAGAAAACAAACAGA+AGG | + | chr7_1:24417082-24417101 | Msa1014790:intron | 25.0% |
| ! | ATTCATAAAAATAAGACACG+TGG | + | chr7_1:24417231-24417250 | Msa1014790:intron | 25.0% |
| !!! | TTTCATAATCTACTGGTTTT+GGG | + | chr7_1:24417554-24417573 | Msa1014790:intron | 25.0% |
| !! | CTTTTATCCCCTAAAAAAAT+TGG | - | chr7_1:24417648-24417667 | None:intergenic | 25.0% |
| !!! | CAATTTTTTTAGGGGATAAA+AGG | + | chr7_1:24417646-24417665 | Msa1014790:intron | 25.0% |
| !! | AGTGACGAAAATTTCATTTT+TGG | + | chr7_1:24417725-24417744 | Msa1014790:CDS | 25.0% |
| ! | GCAAATGTTCACAAAATATT+TGG | + | chr7_1:24416243-24416262 | Msa1014790:CDS | 25.0% |
| ! | TACTGAAACAACAAAGATAA+TGG | + | chr7_1:24416918-24416937 | Msa1014790:intron | 25.0% |
| !! | TTTCTGTTTAGGATTTGTAT+GGG | - | chr7_1:24417048-24417067 | None:intergenic | 25.0% |
| !!! | TTTTCTGTTTAGGATTTGTA+TGG | - | chr7_1:24417049-24417068 | None:intergenic | 25.0% |
| ! | ATTAGAAGAAAACAAACAGA+AGG | + | chr7_1:24417082-24417101 | Msa1014790:intron | 25.0% |
| ! | ATTCATAAAAATAAGACACG+TGG | + | chr7_1:24417231-24417250 | Msa1014790:intron | 25.0% |
| !!! | TTTCATAATCTACTGGTTTT+GGG | + | chr7_1:24417554-24417573 | Msa1014790:intron | 25.0% |
| !! | CTTTTATCCCCTAAAAAAAT+TGG | - | chr7_1:24417648-24417667 | None:intergenic | 25.0% |
| !!! | CAATTTTTTTAGGGGATAAA+AGG | + | chr7_1:24417646-24417665 | Msa1014790:intron | 25.0% |
| !! | AGTGACGAAAATTTCATTTT+TGG | + | chr7_1:24417725-24417744 | Msa1014790:CDS | 25.0% |
| TGAACATTTGCAAATTTCTG+TGG | - | chr7_1:24416234-24416253 | None:intergenic | 30.0% | |
| AGGATAAAAGATCCAGTTTA+TGG | + | chr7_1:24416354-24416373 | Msa1014790:CDS | 30.0% | |
| ! | TAGTAGAATCAAGTTCCTTT+TGG | - | chr7_1:24416425-24416444 | None:intergenic | 30.0% |
| CAGTATATGTTTATACCGTA+TGG | + | chr7_1:24416790-24416809 | Msa1014790:intron | 30.0% | |
| !! | ATATAGCAGAAGAAGCATTA+CGG | + | chr7_1:24417010-24417029 | Msa1014790:intron | 30.0% |
| ACAAATCCTAAACAGAAAAC+TGG | + | chr7_1:24417050-24417069 | Msa1014790:intron | 30.0% | |
| ! | TGTTTTCTTCTAATGTGGTT+AGG | - | chr7_1:24417076-24417095 | None:intergenic | 30.0% |
| !! | CTGTTTGTTTTCTTCTAATG+TGG | - | chr7_1:24417081-24417100 | None:intergenic | 30.0% |
| GTGGAAAAATAAGATCTCAA+TGG | + | chr7_1:24417250-24417269 | Msa1014790:intron | 30.0% | |
| TCTACAGTTTCATAATCTAC+TGG | + | chr7_1:24417547-24417566 | Msa1014790:intron | 30.0% | |
| !!! | GTTTCATAATCTACTGGTTT+TGG | + | chr7_1:24417553-24417572 | Msa1014790:intron | 30.0% |
| TAATCACAACCAAATTGAGT+TGG | + | chr7_1:24417589-24417608 | Msa1014790:intron | 30.0% | |
| TGAACATTTGCAAATTTCTG+TGG | - | chr7_1:24416234-24416253 | None:intergenic | 30.0% | |
| AGGATAAAAGATCCAGTTTA+TGG | + | chr7_1:24416354-24416373 | Msa1014790:CDS | 30.0% | |
| ! | TAGTAGAATCAAGTTCCTTT+TGG | - | chr7_1:24416425-24416444 | None:intergenic | 30.0% |
| CAGTATATGTTTATACCGTA+TGG | + | chr7_1:24416790-24416809 | Msa1014790:intron | 30.0% | |
| !! | ATATAGCAGAAGAAGCATTA+CGG | + | chr7_1:24417010-24417029 | Msa1014790:intron | 30.0% |
| ACAAATCCTAAACAGAAAAC+TGG | + | chr7_1:24417050-24417069 | Msa1014790:intron | 30.0% | |
| ! | TGTTTTCTTCTAATGTGGTT+AGG | - | chr7_1:24417076-24417095 | None:intergenic | 30.0% |
| !! | CTGTTTGTTTTCTTCTAATG+TGG | - | chr7_1:24417081-24417100 | None:intergenic | 30.0% |
| GTGGAAAAATAAGATCTCAA+TGG | + | chr7_1:24417250-24417269 | Msa1014790:intron | 30.0% | |
| TCTACAGTTTCATAATCTAC+TGG | + | chr7_1:24417547-24417566 | Msa1014790:intron | 30.0% | |
| !!! | GTTTCATAATCTACTGGTTT+TGG | + | chr7_1:24417553-24417572 | Msa1014790:intron | 30.0% |
| TAATCACAACCAAATTGAGT+TGG | + | chr7_1:24417589-24417608 | Msa1014790:intron | 30.0% | |
| TATGGAGCAAATATGCAATC+TGG | - | chr7_1:24416195-24416214 | None:intergenic | 35.0% | |
| ATGAAGTGCAACAACATCAA+AGG | + | chr7_1:24416292-24416311 | Msa1014790:CDS | 35.0% | |
| TGAAGTGCAACAACATCAAA+GGG | + | chr7_1:24416293-24416312 | Msa1014790:CDS | 35.0% | |
| ! | CTTTTTACTATCCTTCTCCT+TGG | + | chr7_1:24416562-24416581 | Msa1014790:CDS | 35.0% |
| TCATTATTGTTCCAAGGAGA+AGG | - | chr7_1:24416576-24416595 | None:intergenic | 35.0% | |
| AGTGGATCATTATTGTTCCA+AGG | - | chr7_1:24416582-24416601 | None:intergenic | 35.0% | |
| TGGAACAATAATGATCCACT+TGG | + | chr7_1:24416582-24416601 | Msa1014790:CDS | 35.0% | |
| ACAATTCTACTAGCCCTTTA+AGG | + | chr7_1:24416700-24416719 | Msa1014790:intron | 35.0% | |
| ATTGCAATTTCCTCCCTAAA+TGG | - | chr7_1:24417201-24417220 | None:intergenic | 35.0% | |
| !! | TTCTGGAATGATAAAGCAAG+TGG | - | chr7_1:24417434-24417453 | None:intergenic | 35.0% |
| !! | ACAACCAAATTGAGTTGGTA+TGG | + | chr7_1:24417594-24417613 | Msa1014790:intron | 35.0% |
| !! | CAACCAAATTGAGTTGGTAT+GGG | + | chr7_1:24417595-24417614 | Msa1014790:intron | 35.0% |
| TATGGAGCAAATATGCAATC+TGG | - | chr7_1:24416195-24416214 | None:intergenic | 35.0% | |
| ATGAAGTGCAACAACATCAA+AGG | + | chr7_1:24416292-24416311 | Msa1014790:CDS | 35.0% | |
| TGAAGTGCAACAACATCAAA+GGG | + | chr7_1:24416293-24416312 | Msa1014790:CDS | 35.0% | |
| ! | CTTTTTACTATCCTTCTCCT+TGG | + | chr7_1:24416562-24416581 | Msa1014790:CDS | 35.0% |
| TCATTATTGTTCCAAGGAGA+AGG | - | chr7_1:24416576-24416595 | None:intergenic | 35.0% | |
| AGTGGATCATTATTGTTCCA+AGG | - | chr7_1:24416582-24416601 | None:intergenic | 35.0% | |
| TGGAACAATAATGATCCACT+TGG | + | chr7_1:24416582-24416601 | Msa1014790:CDS | 35.0% | |
| ACAATTCTACTAGCCCTTTA+AGG | + | chr7_1:24416700-24416719 | Msa1014790:intron | 35.0% | |
| ATTGCAATTTCCTCCCTAAA+TGG | - | chr7_1:24417201-24417220 | None:intergenic | 35.0% | |
| !! | TTCTGGAATGATAAAGCAAG+TGG | - | chr7_1:24417434-24417453 | None:intergenic | 35.0% |
| !! | ACAACCAAATTGAGTTGGTA+TGG | + | chr7_1:24417594-24417613 | Msa1014790:intron | 35.0% |
| !! | CAACCAAATTGAGTTGGTAT+GGG | + | chr7_1:24417595-24417614 | Msa1014790:intron | 35.0% |
| AGCACATGGTGAATTTGAGT+AGG | - | chr7_1:24416142-24416161 | None:intergenic | 40.0% | |
| ! | TGGATCTTTTATCCTTGCCT+CGG | - | chr7_1:24416349-24416368 | None:intergenic | 40.0% |
| GATCCAGTTTATGGTTGTGT+TGG | + | chr7_1:24416363-24416382 | Msa1014790:CDS | 40.0% | |
| ! | TTGTCTTTGGAGGACTGAAA+TGG | - | chr7_1:24416391-24416410 | None:intergenic | 40.0% |
| TCCTCCAAAGACAAGTTCTT+AGG | + | chr7_1:24416397-24416416 | Msa1014790:CDS | 40.0% | |
| ACAAGTTCTTAGGCTCCAAA+AGG | + | chr7_1:24416407-24416426 | Msa1014790:CDS | 40.0% | |
| GTAGCTGCGATATCATGATT+CGG | - | chr7_1:24416486-24416505 | None:intergenic | 40.0% | |
| ATCATGATATCGCAGCTACA+AGG | + | chr7_1:24416487-24416506 | Msa1014790:CDS | 40.0% | |
| GGAGAAGGATAGTAAAAAGC+CGG | - | chr7_1:24416561-24416580 | None:intergenic | 40.0% | |
| AATAATGATCCACTTGGCGA+TGG | + | chr7_1:24416588-24416607 | Msa1014790:CDS | 40.0% | |
| TTTGAAGAAGGGGATTGATC+TGG | + | chr7_1:24416737-24416756 | Msa1014790:intron | 40.0% | |
| TTGAAGAAGGGGATTGATCT+GGG | + | chr7_1:24416738-24416757 | Msa1014790:intron | 40.0% | |
| ! | GTTAGGCCAGTTTTCTGTTT+AGG | - | chr7_1:24417059-24417078 | None:intergenic | 40.0% |
| AATTTCCTCCCTAAATGGAG+AGG | - | chr7_1:24417196-24417215 | None:intergenic | 40.0% | |
| AGTTGTGATACAGTAGTCGA+CGG | - | chr7_1:24417406-24417425 | None:intergenic | 40.0% | |
| GAGAAACAGGGAACAAATTC+TGG | - | chr7_1:24417451-24417470 | None:intergenic | 40.0% | |
| ACAACAGTCACAGAGAAACA+GGG | - | chr7_1:24417463-24417482 | None:intergenic | 40.0% | |
| CAACCCATACCAACTCAATT+TGG | - | chr7_1:24417601-24417620 | None:intergenic | 40.0% | |
| ! | TATGGGTTGAACATGAGATG+AGG | + | chr7_1:24417612-24417631 | Msa1014790:intron | 40.0% |
| !!! | CATTTTTGGCAACACCACTA+AGG | + | chr7_1:24417739-24417758 | Msa1014790:CDS | 40.0% |
| AGCACATGGTGAATTTGAGT+AGG | - | chr7_1:24416142-24416161 | None:intergenic | 40.0% | |
| ! | TGGATCTTTTATCCTTGCCT+CGG | - | chr7_1:24416349-24416368 | None:intergenic | 40.0% |
| GATCCAGTTTATGGTTGTGT+TGG | + | chr7_1:24416363-24416382 | Msa1014790:CDS | 40.0% | |
| ! | TTGTCTTTGGAGGACTGAAA+TGG | - | chr7_1:24416391-24416410 | None:intergenic | 40.0% |
| TCCTCCAAAGACAAGTTCTT+AGG | + | chr7_1:24416397-24416416 | Msa1014790:CDS | 40.0% | |
| ACAAGTTCTTAGGCTCCAAA+AGG | + | chr7_1:24416407-24416426 | Msa1014790:CDS | 40.0% | |
| GTAGCTGCGATATCATGATT+CGG | - | chr7_1:24416486-24416505 | None:intergenic | 40.0% | |
| ATCATGATATCGCAGCTACA+AGG | + | chr7_1:24416487-24416506 | Msa1014790:CDS | 40.0% | |
| GGAGAAGGATAGTAAAAAGC+CGG | - | chr7_1:24416561-24416580 | None:intergenic | 40.0% | |
| AATAATGATCCACTTGGCGA+TGG | + | chr7_1:24416588-24416607 | Msa1014790:CDS | 40.0% | |
| TTTGAAGAAGGGGATTGATC+TGG | + | chr7_1:24416737-24416756 | Msa1014790:intron | 40.0% | |
| TTGAAGAAGGGGATTGATCT+GGG | + | chr7_1:24416738-24416757 | Msa1014790:intron | 40.0% | |
| ! | GTTAGGCCAGTTTTCTGTTT+AGG | - | chr7_1:24417059-24417078 | None:intergenic | 40.0% |
| AATTTCCTCCCTAAATGGAG+AGG | - | chr7_1:24417196-24417215 | None:intergenic | 40.0% | |
| AGTTGTGATACAGTAGTCGA+CGG | - | chr7_1:24417406-24417425 | None:intergenic | 40.0% | |
| GAGAAACAGGGAACAAATTC+TGG | - | chr7_1:24417451-24417470 | None:intergenic | 40.0% | |
| ACAACAGTCACAGAGAAACA+GGG | - | chr7_1:24417463-24417482 | None:intergenic | 40.0% | |
| CAACCCATACCAACTCAATT+TGG | - | chr7_1:24417601-24417620 | None:intergenic | 40.0% | |
| ! | TATGGGTTGAACATGAGATG+AGG | + | chr7_1:24417612-24417631 | Msa1014790:intron | 40.0% |
| !!! | CATTTTTGGCAACACCACTA+AGG | + | chr7_1:24417739-24417758 | Msa1014790:CDS | 40.0% |
| AAAAACTTGCACGCAGCACA+TGG | - | chr7_1:24416156-24416175 | None:intergenic | 45.0% | |
| !! | CTGCGTGCAAGTTTTTGAGA+AGG | + | chr7_1:24416160-24416179 | Msa1014790:CDS | 45.0% |
| ATTTCTGTGGCTCTTCTGGT+GGG | - | chr7_1:24416221-24416240 | None:intergenic | 45.0% | |
| AATTTCTGTGGCTCTTCTGG+TGG | - | chr7_1:24416222-24416241 | None:intergenic | 45.0% | |
| GCAAATTTCTGTGGCTCTTC+TGG | - | chr7_1:24416225-24416244 | None:intergenic | 45.0% | |
| GCACCAACACAACCATAAAC+TGG | - | chr7_1:24416369-24416388 | None:intergenic | 45.0% | |
| GCCTAAGAACTTGTCTTTGG+AGG | - | chr7_1:24416401-24416420 | None:intergenic | 45.0% | |
| GGAGCCTAAGAACTTGTCTT+TGG | - | chr7_1:24416404-24416423 | None:intergenic | 45.0% | |
| GATATCGCAGCTACAAGGAT+CGG | + | chr7_1:24416492-24416511 | Msa1014790:CDS | 45.0% | |
| GAAGGATAGTAAAAAGCCGG+AGG | - | chr7_1:24416558-24416577 | None:intergenic | 45.0% | |
| ACTTGGCGATGGTTATCACA+CGG | + | chr7_1:24416599-24416618 | Msa1014790:CDS | 45.0% | |
| TGTGCACTCGTATATGTGTC+TGG | - | chr7_1:24417170-24417189 | None:intergenic | 45.0% | |
| TGCACAGATCCTCTCCATTT+AGG | + | chr7_1:24417184-24417203 | Msa1014790:intron | 45.0% | |
| GCACAGATCCTCTCCATTTA+GGG | + | chr7_1:24417185-24417204 | Msa1014790:intron | 45.0% | |
| CATCTTCAACCTTTCCCCAT+TGG | + | chr7_1:24417356-24417375 | Msa1014790:intron | 45.0% | |
| CACAACAGTCACAGAGAAAC+AGG | - | chr7_1:24417464-24417483 | None:intergenic | 45.0% | |
| AGGACCATTGACACCAACAT+CGG | + | chr7_1:24417666-24417685 | Msa1014790:CDS | 45.0% | |
| !! | TGTTCCGATGTTGGTGTCAA+TGG | - | chr7_1:24417673-24417692 | None:intergenic | 45.0% |
| TGTTGTCTCTGTTCCGATGT+TGG | - | chr7_1:24417682-24417701 | None:intergenic | 45.0% | |
| ! | TTTTGGCAACACCACTAAGG+CGG | + | chr7_1:24417742-24417761 | Msa1014790:CDS | 45.0% |
| AAAAACTTGCACGCAGCACA+TGG | - | chr7_1:24416156-24416175 | None:intergenic | 45.0% | |
| !! | CTGCGTGCAAGTTTTTGAGA+AGG | + | chr7_1:24416160-24416179 | Msa1014790:CDS | 45.0% |
| ATTTCTGTGGCTCTTCTGGT+GGG | - | chr7_1:24416221-24416240 | None:intergenic | 45.0% | |
| AATTTCTGTGGCTCTTCTGG+TGG | - | chr7_1:24416222-24416241 | None:intergenic | 45.0% | |
| GCAAATTTCTGTGGCTCTTC+TGG | - | chr7_1:24416225-24416244 | None:intergenic | 45.0% | |
| GCACCAACACAACCATAAAC+TGG | - | chr7_1:24416369-24416388 | None:intergenic | 45.0% | |
| GCCTAAGAACTTGTCTTTGG+AGG | - | chr7_1:24416401-24416420 | None:intergenic | 45.0% | |
| GGAGCCTAAGAACTTGTCTT+TGG | - | chr7_1:24416404-24416423 | None:intergenic | 45.0% | |
| GATATCGCAGCTACAAGGAT+CGG | + | chr7_1:24416492-24416511 | Msa1014790:CDS | 45.0% | |
| GAAGGATAGTAAAAAGCCGG+AGG | - | chr7_1:24416558-24416577 | None:intergenic | 45.0% | |
| ACTTGGCGATGGTTATCACA+CGG | + | chr7_1:24416599-24416618 | Msa1014790:CDS | 45.0% | |
| TGTGCACTCGTATATGTGTC+TGG | - | chr7_1:24417170-24417189 | None:intergenic | 45.0% | |
| TGCACAGATCCTCTCCATTT+AGG | + | chr7_1:24417184-24417203 | Msa1014790:intron | 45.0% | |
| GCACAGATCCTCTCCATTTA+GGG | + | chr7_1:24417185-24417204 | Msa1014790:intron | 45.0% | |
| CATCTTCAACCTTTCCCCAT+TGG | + | chr7_1:24417356-24417375 | Msa1014790:intron | 45.0% | |
| CACAACAGTCACAGAGAAAC+AGG | - | chr7_1:24417464-24417483 | None:intergenic | 45.0% | |
| AGGACCATTGACACCAACAT+CGG | + | chr7_1:24417666-24417685 | Msa1014790:CDS | 45.0% | |
| !! | TGTTCCGATGTTGGTGTCAA+TGG | - | chr7_1:24417673-24417692 | None:intergenic | 45.0% |
| TGTTGTCTCTGTTCCGATGT+TGG | - | chr7_1:24417682-24417701 | None:intergenic | 45.0% | |
| ! | TTTTGGCAACACCACTAAGG+CGG | + | chr7_1:24417742-24417761 | Msa1014790:CDS | 45.0% |
| GGCTCTTCTGGTGGGAAATA+TGG | - | chr7_1:24416213-24416232 | None:intergenic | 50.0% | |
| TATCCTTGCCTCGGCTTCAT+AGG | - | chr7_1:24416340-24416359 | None:intergenic | 50.0% | |
| ACAAGGATCGGTGGTGAAGA+TGG | + | chr7_1:24416504-24416523 | Msa1014790:CDS | 50.0% | |
| GGATAGTAAAAAGCCGGAGG+AGG | - | chr7_1:24416555-24416574 | None:intergenic | 50.0% | |
| GTGTGATAACCATCGCCAAG+TGG | - | chr7_1:24416600-24416619 | None:intergenic | 50.0% | |
| CTTGGCGATGGTTATCACAC+GGG | + | chr7_1:24416600-24416619 | Msa1014790:CDS | 50.0% | |
| AAGAACCAGCAGACCAGAGT+AGG | + | chr7_1:24417133-24417152 | Msa1014790:intron | 50.0% | |
| AGAACCAGCAGACCAGAGTA+GGG | + | chr7_1:24417134-24417153 | Msa1014790:intron | 50.0% | |
| ! | GGTTTTCTGTCTCCCTACTC+TGG | - | chr7_1:24417149-24417168 | None:intergenic | 50.0% |
| CAGATCCTCTCCATTTAGGG+AGG | + | chr7_1:24417188-24417207 | Msa1014790:intron | 50.0% | |
| TACGACGATGATACGAGGTG+TGG | + | chr7_1:24417768-24417787 | Msa1014790:CDS | 50.0% | |
| ACGATGATACGAGGTGTGGT+CGG | + | chr7_1:24417772-24417791 | Msa1014790:CDS | 50.0% | |
| GGCTCTTCTGGTGGGAAATA+TGG | - | chr7_1:24416213-24416232 | None:intergenic | 50.0% | |
| TATCCTTGCCTCGGCTTCAT+AGG | - | chr7_1:24416340-24416359 | None:intergenic | 50.0% | |
| ACAAGGATCGGTGGTGAAGA+TGG | + | chr7_1:24416504-24416523 | Msa1014790:CDS | 50.0% | |
| GGATAGTAAAAAGCCGGAGG+AGG | - | chr7_1:24416555-24416574 | None:intergenic | 50.0% | |
| GTGTGATAACCATCGCCAAG+TGG | - | chr7_1:24416600-24416619 | None:intergenic | 50.0% | |
| CTTGGCGATGGTTATCACAC+GGG | + | chr7_1:24416600-24416619 | Msa1014790:CDS | 50.0% | |
| AAGAACCAGCAGACCAGAGT+AGG | + | chr7_1:24417133-24417152 | Msa1014790:intron | 50.0% | |
| AGAACCAGCAGACCAGAGTA+GGG | + | chr7_1:24417134-24417153 | Msa1014790:intron | 50.0% | |
| ! | GGTTTTCTGTCTCCCTACTC+TGG | - | chr7_1:24417149-24417168 | None:intergenic | 50.0% |
| CAGATCCTCTCCATTTAGGG+AGG | + | chr7_1:24417188-24417207 | Msa1014790:intron | 50.0% | |
| TACGACGATGATACGAGGTG+TGG | + | chr7_1:24417768-24417787 | Msa1014790:CDS | 50.0% | |
| ACGATGATACGAGGTGTGGT+CGG | + | chr7_1:24417772-24417791 | Msa1014790:CDS | 50.0% | |
| CTCTCTTGCCTATGAAGCCG+AGG | + | chr7_1:24416329-24416348 | Msa1014790:CDS | 55.0% | |
| TTGCCTATGAAGCCGAGGCA+AGG | + | chr7_1:24416334-24416353 | Msa1014790:CDS | 55.0% | |
| ATCGCAGCTACAAGGATCGG+TGG | + | chr7_1:24416495-24416514 | Msa1014790:CDS | 55.0% | |
| AGGATCGGTGGTGAAGATGG+AGG | + | chr7_1:24416507-24416526 | Msa1014790:CDS | 55.0% | |
| ATCGGTGGTGAAGATGGAGG+CGG | + | chr7_1:24416510-24416529 | Msa1014790:CDS | 55.0% | |
| GATGGAGGCGGTTCTTCTCT+CGG | + | chr7_1:24416522-24416541 | Msa1014790:CDS | 55.0% | |
| TCTCGGTCAATCTCCTCCTC+CGG | + | chr7_1:24416539-24416558 | Msa1014790:CDS | 55.0% | |
| GATGGTTATCACACGGGAGG+AGG | + | chr7_1:24416606-24416625 | Msa1014790:CDS | 55.0% | |
| CAAACAGAAGGAAGACGCGC+AGG | + | chr7_1:24417094-24417113 | Msa1014790:intron | 55.0% | |
| ! | TGAAGGGCACAGTGCCAATG+GGG | - | chr7_1:24417373-24417392 | None:intergenic | 55.0% |
| ! | GTGAAGGGCACAGTGCCAAT+GGG | - | chr7_1:24417374-24417393 | None:intergenic | 55.0% |
| ATTGGCACTGTGCCCTTCAC+CGG | + | chr7_1:24417374-24417393 | Msa1014790:intron | 55.0% | |
| GGCAGTACGACGATGATACG+AGG | + | chr7_1:24417763-24417782 | Msa1014790:CDS | 55.0% | |
| CTCTCTTGCCTATGAAGCCG+AGG | + | chr7_1:24416329-24416348 | Msa1014790:CDS | 55.0% | |
| TTGCCTATGAAGCCGAGGCA+AGG | + | chr7_1:24416334-24416353 | Msa1014790:CDS | 55.0% | |
| ATCGCAGCTACAAGGATCGG+TGG | + | chr7_1:24416495-24416514 | Msa1014790:CDS | 55.0% | |
| AGGATCGGTGGTGAAGATGG+AGG | + | chr7_1:24416507-24416526 | Msa1014790:CDS | 55.0% | |
| ATCGGTGGTGAAGATGGAGG+CGG | + | chr7_1:24416510-24416529 | Msa1014790:CDS | 55.0% | |
| GATGGAGGCGGTTCTTCTCT+CGG | + | chr7_1:24416522-24416541 | Msa1014790:CDS | 55.0% | |
| TCTCGGTCAATCTCCTCCTC+CGG | + | chr7_1:24416539-24416558 | Msa1014790:CDS | 55.0% | |
| GATGGTTATCACACGGGAGG+AGG | + | chr7_1:24416606-24416625 | Msa1014790:CDS | 55.0% | |
| CAAACAGAAGGAAGACGCGC+AGG | + | chr7_1:24417094-24417113 | Msa1014790:intron | 55.0% | |
| ! | TGAAGGGCACAGTGCCAATG+GGG | - | chr7_1:24417373-24417392 | None:intergenic | 55.0% |
| ! | GTGAAGGGCACAGTGCCAAT+GGG | - | chr7_1:24417374-24417393 | None:intergenic | 55.0% |
| ATTGGCACTGTGCCCTTCAC+CGG | + | chr7_1:24417374-24417393 | Msa1014790:intron | 55.0% | |
| GGCAGTACGACGATGATACG+AGG | + | chr7_1:24417763-24417782 | Msa1014790:CDS | 55.0% | |
| GGCGATGGTTATCACACGGG+AGG | + | chr7_1:24416603-24416622 | Msa1014790:CDS | 60.0% | |
| GTCTCCCTACTCTGGTCTGC+TGG | - | chr7_1:24417141-24417160 | None:intergenic | 60.0% | |
| GGCACAGTGCCAATGGGGAA+AGG | - | chr7_1:24417368-24417387 | None:intergenic | 60.0% | |
| ! | GGTGAAGGGCACAGTGCCAA+TGG | - | chr7_1:24417375-24417394 | None:intergenic | 60.0% |
| CAGTAGTCGACGGAAACCGC+CGG | - | chr7_1:24417396-24417415 | None:intergenic | 60.0% | |
| TCGTCGTACTGCCGCCTTAG+TGG | - | chr7_1:24417756-24417775 | None:intergenic | 60.0% | |
| GGCGATGGTTATCACACGGG+AGG | + | chr7_1:24416603-24416622 | Msa1014790:CDS | 60.0% | |
| GTCTCCCTACTCTGGTCTGC+TGG | - | chr7_1:24417141-24417160 | None:intergenic | 60.0% | |
| GGCACAGTGCCAATGGGGAA+AGG | - | chr7_1:24417368-24417387 | None:intergenic | 60.0% | |
| ! | GGTGAAGGGCACAGTGCCAA+TGG | - | chr7_1:24417375-24417394 | None:intergenic | 60.0% |
| CAGTAGTCGACGGAAACCGC+CGG | - | chr7_1:24417396-24417415 | None:intergenic | 60.0% | |
| TCGTCGTACTGCCGCCTTAG+TGG | - | chr7_1:24417756-24417775 | None:intergenic | 60.0% | |
| CGACGGAAACCGCCGGTGAA+GGG | - | chr7_1:24417389-24417408 | None:intergenic | 65.0% | |
| TCGACGGAAACCGCCGGTGA+AGG | - | chr7_1:24417390-24417409 | None:intergenic | 65.0% | |
| CGACGGAAACCGCCGGTGAA+GGG | - | chr7_1:24417389-24417408 | None:intergenic | 65.0% | |
| TCGACGGAAACCGCCGGTGA+AGG | - | chr7_1:24417390-24417409 | None:intergenic | 65.0% | |
| GGCACTGTGCCCTTCACCGG+CGG | + | chr7_1:24417377-24417396 | Msa1014790:intron | 70.0% | |
| GGCACTGTGCCCTTCACCGG+CGG | + | chr7_1:24417377-24417396 | Msa1014790:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 24416123 | 24417803 | 24416123 | ID=Msa1014790;Name=Msa1014790 |
| chr7_1 | mRNA | 24416123 | 24417803 | 24416123 | ID=Msa1014790-mRNA-1;Parent=Msa1014790;Name=Msa1014790-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|0.5|1|1|2|0|216 |
| chr7_1 | exon | 24416123 | 24416627 | 24416123 | ID=Msa1014790-mRNA-1:exon:5607;Parent=Msa1014790-mRNA-1 |
| chr7_1 | exon | 24417658 | 24417803 | 24417658 | ID=Msa1014790-mRNA-1:exon:5608;Parent=Msa1014790-mRNA-1 |
| chr7_1 | CDS | 24416123 | 24416627 | 24416123 | ID=Msa1014790-mRNA-1:cds;Parent=Msa1014790-mRNA-1 |
| chr7_1 | CDS | 24417658 | 24417803 | 24417658 | ID=Msa1014790-mRNA-1:cds;Parent=Msa1014790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
