AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549550 MtrunA17_Chr4g0034251 99.398 166 1 0 1 166 1 166 1.01e-114 322
Msa0549550 MtrunA17_Chr8g0373951 59.211 152 62 0 15 166 1 152 1.19e-55 172
Msa0549550 MtrunA17_Chr5g0403141 63.158 152 56 0 15 166 2 153 3.33e-54 168
Msa0549550 MtrunA17_Chr1g0186551 41.060 151 89 0 15 165 1 151 3.63e-30 107
Msa0549550 MtrunA17_Chr1g0186591 43.333 150 83 2 15 163 1 149 1.05e-29 106
Msa0549550 MtrunA17_Chr4g0009521 40.909 154 89 1 15 166 2 155 1.74e-28 103
Msa0549550 MtrunA17_Chr4g0028981 35.762 151 96 1 15 165 35 184 7.00e-23 89.7
Msa0549550 MtrunA17_Chr1g0167831 36.842 133 84 0 15 147 1 133 8.11e-14 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549550 AT3G50810.3 51.974 152 73 0 15 166 1 152 8.44e-49 155
Msa0549550 AT3G50810.2 51.974 152 73 0 15 166 1 152 8.44e-49 155
Msa0549550 AT3G50810.1 51.974 152 73 0 15 166 1 152 8.44e-49 155
Msa0549550 AT4G37235.1 57.143 154 59 2 15 166 1 149 6.38e-48 152
Msa0549550 AT1G49405.1 56.818 132 56 1 15 146 1 131 1.57e-38 129
Msa0549550 AT3G23200.1 39.735 151 91 0 15 165 1 151 4.13e-30 107
Msa0549550 AT3G53850.1 36.774 155 94 2 15 166 1 154 6.65e-25 94.4
Msa0549550 AT3G53850.2 36.774 155 94 2 15 166 1 154 6.65e-25 94.4
Msa0549550 AT5G02060.1 41.447 152 85 2 15 163 1 151 1.04e-24 94.0
Msa0549550 AT2G28370.1 38.994 159 95 2 7 165 22 178 2.53e-23 90.9
Msa0549550 AT2G37200.1 35.570 149 94 2 15 163 31 177 3.09e-18 77.8
Msa0549550 AT2G37200.2 35.570 149 94 2 15 163 60 206 5.83e-18 77.8
Msa0549550 AT3G23200.2 39.252 107 65 0 59 165 18 124 3.25e-16 71.2
Msa0549550 AT3G53850.3 34.058 138 82 3 37 166 5 141 7.16e-15 68.2

Find 109 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTCACAATATGTATT+TGG 0.117469 4_1:+44767267 Msa0549550:three_prime_UTR
TTCCCTTCTCTTTATGTCTT+TGG 0.136583 4_1:+44765444 Msa0549550:CDS
TCTACAGCTACACAGCTTTC+TGG 0.190585 4_1:+44765476 Msa0549550:CDS
TTATTCATGTCCTAGCTATT+TGG 0.210283 4_1:+44766649 Msa0549550:intron
TCCCTTCTCTTTATGTCTTT+GGG 0.218721 4_1:+44765445 Msa0549550:CDS
TCTTTAATTATGTATGATAA+TGG 0.224272 4_1:-44765106 None:intergenic
CTTTCAGCTGAAGCTTCTTT+TGG 0.249743 4_1:-44765290 None:intergenic
TTCATGTAACTTATTCTATA+AGG 0.251103 4_1:-44765349 None:intergenic
GGAAATTCTGTTTGAATCAT+AGG 0.253973 4_1:+44765216 Msa0549550:five_prime_UTR
TACCTGCAGCAAAGCTTTAT+AGG 0.287744 4_1:-44767046 None:intergenic
TGTGTCATGGTTTCTGTCCT+TGG 0.292773 4_1:+44767093 Msa0549550:CDS
GAAATGCTATTAAATATTAT+AGG 0.297458 4_1:+44765251 Msa0549550:five_prime_UTR
TGATTATTGTTGTTGGATAT+TGG 0.303055 4_1:+44766774 Msa0549550:CDS
GATTATTGTTGTTGGATATT+GGG 0.306128 4_1:+44766775 Msa0549550:CDS
CAACTATCTCATGGAACATT+TGG 0.310372 4_1:-44767962 None:intergenic
CATCCTTGAGGCCGAGGCCT+GGG 0.320849 4_1:-44767666 None:intergenic
CTTTAATTATGTATGATAAT+GGG 0.324399 4_1:-44765105 None:intergenic
AGATATAACTGTCAAGAATA+TGG 0.335129 4_1:-44767543 None:intergenic
AGGCAGCTGCTGCTAGTGTC+AGG 0.369998 4_1:-44766973 None:intergenic
TTCACGTTAGCATTGGTAGA+TGG 0.388590 4_1:+44766704 Msa0549550:CDS
TTTGGTGACAATCATGGGTT+TGG 0.390209 4_1:+44766667 Msa0549550:CDS
TATAGTTATTGAACAATTGA+AGG 0.395906 4_1:+44767494 Msa0549550:three_prime_UTR
AAAGCTCACAATATGTATTT+GGG 0.401334 4_1:+44767268 Msa0549550:three_prime_UTR
GCTTTGCCTGAGAACTCTCT+TGG 0.410849 4_1:-44767627 None:intergenic
ATAATAGAGCGAATACAGTT+TGG 0.411171 4_1:+44767375 Msa0549550:three_prime_UTR
TAGCTATTTGGTGACAATCA+TGG 0.411496 4_1:+44766661 Msa0549550:intron
ACAATAATCAACAATATTCC+TGG 0.414279 4_1:-44766761 None:intergenic
CTGAAAGAAATAAGCTTGTA+TGG 0.414661 4_1:+44765306 Msa0549550:exon
ACAAAGAGGGTAGCAGATAA+AGG 0.415465 4_1:-44767132 None:intergenic
TTCTCTAGGCAATCAACTAA+TGG 0.418900 4_1:-44767462 None:intergenic
AATATTCCTGGTTGACGAAT+GGG 0.419042 4_1:-44766749 None:intergenic
GTAGACTGTAGCTGCACAAT+TGG 0.422673 4_1:-44767710 None:intergenic
ACCTGCAGCAAAGCTTTATA+GGG 0.423414 4_1:-44767045 None:intergenic
GGTAGCGCTAGTGCCGGTTC+AGG 0.423712 4_1:-44767836 None:intergenic
AGTTCTGGCTGAATTATCAT+TGG 0.427696 4_1:-44768003 None:intergenic
ATGAAGATCAACCTATGTTA+AGG 0.428204 4_1:+44765195 Msa0549550:five_prime_UTR
AAGATCCTTGCGAATTTAGC+AGG 0.439168 4_1:-44767018 None:intergenic
TCATCCTTGAGGCCGAGGCC+TGG 0.439340 4_1:-44767667 None:intergenic
TAAAGCTTTGCTGCAGGTAC+AGG 0.441403 4_1:+44767050 Msa0549550:CDS
GCACTTGTGCCCACAGAGCC+AGG 0.442656 4_1:-44765379 None:intergenic
TCAATATGTAATCTTCGAGT+TGG 0.449317 4_1:-44767601 None:intergenic
TTATTATGAATGAAATGTCT+TGG 0.452009 4_1:-44767356 None:intergenic
AAGCAGATGAAAACAAGGTT+TGG 0.456691 4_1:-44765423 None:intergenic
GCAGCAGTTTGCTCCTGAAC+CGG 0.457199 4_1:+44767823 Msa0549550:three_prime_UTR
TGTTAGCAATCCCCAGGCCT+CGG 0.465169 4_1:+44767655 Msa0549550:three_prime_UTR
GTACAGGATATCTGCAGTTA+TGG 0.466206 4_1:+44767066 Msa0549550:CDS
AGCTATTTGGTGACAATCAT+GGG 0.471135 4_1:+44766662 Msa0549550:intron
ATATTGTTGATTATTGTTGT+TGG 0.471514 4_1:+44766767 Msa0549550:CDS
TAACATATTGAACATGAGTC+TGG 0.478993 4_1:-44768190 None:intergenic
CATTTGACATAGCCATAGCT+TGG 0.481202 4_1:+44767778 Msa0549550:three_prime_UTR
ATCCTTGAGGCCGAGGCCTG+GGG 0.488704 4_1:-44767665 None:intergenic
GCCCTATAAAGCTTTGCTGC+AGG 0.489609 4_1:+44767044 Msa0549550:CDS
AAGATGATGAATTAAGTTGA+GGG 0.497335 4_1:-44767939 None:intergenic
ATCCCCAGGCCTCGGCCTCA+AGG 0.498174 4_1:+44767663 Msa0549550:three_prime_UTR
GAAGATGATGAATTAAGTTG+AGG 0.499292 4_1:-44767940 None:intergenic
AAATGTCATCCTTGAGGCCG+AGG 0.503374 4_1:-44767672 None:intergenic
AAACAGAATTTCCTTAACAT+AGG 0.505920 4_1:-44765206 None:intergenic
AGGAACTCTCTTATATTTAG+CGG 0.509237 4_1:+44765037 None:intergenic
GATTGTTTGCAACTATCTCA+TGG 0.511960 4_1:-44767971 None:intergenic
TCATGGGTTTGGTTATACCT+TGG 0.513400 4_1:+44766678 Msa0549550:CDS
CAATATTCCTGGTTGACGAA+TGG 0.518569 4_1:-44766750 None:intergenic
CTTCGAGTTGGACTGTAAGC+AGG 0.521612 4_1:-44767589 None:intergenic
TGAGAACCATTGTGCAGTCT+TGG 0.527155 4_1:-44767891 None:intergenic
TCTTATATTTAGCGGCGCTA+AGG 0.529664 4_1:+44765045 Msa0549550:five_prime_UTR
GCCAGCTTCATCCTCAGATT+AGG 0.530843 4_1:+44765400 Msa0549550:CDS
CAACTATCTCATGCTGGCAG+TGG 0.539635 4_1:-44768051 None:intergenic
ATTAAATGAGAATCACAAAG+AGG 0.541148 4_1:-44767146 None:intergenic
TGAAAACCAAGAGAGTTCTC+AGG 0.545120 4_1:+44767621 Msa0549550:three_prime_UTR
TTGACATAGCCATAGCTTGG+AGG 0.545701 4_1:+44767781 Msa0549550:three_prime_UTR
AAATGTCCCATTCGTCAACC+AGG 0.546817 4_1:+44766743 Msa0549550:CDS
CCGTTGGAACCTCCAAGCTA+TGG 0.550015 4_1:-44767790 None:intergenic
ACATAGGTTACTTTGTGTAT+CGG 0.550561 4_1:-44765076 None:intergenic
CGTCTTAGATGAGACTATGC+AGG 0.552448 4_1:-44767740 None:intergenic
GCCTAATCTGAGGATGAAGC+TGG 0.558630 4_1:-44765401 None:intergenic
TACTGTGGTAGCGCTAGTGC+CGG 0.560320 4_1:-44767842 None:intergenic
TTGGAGTTTCACGTTAGCAT+TGG 0.565060 4_1:+44766697 Msa0549550:CDS
CCATAGCTTGGAGGTTCCAA+CGG 0.571201 4_1:+44767790 Msa0549550:three_prime_UTR
CAAATTTGTTAGCAATCCCC+AGG 0.571380 4_1:+44767649 Msa0549550:three_prime_UTR
TGCTGCTGTCATGATTCCGT+TGG 0.573229 4_1:-44767806 None:intergenic
CTCCCAAAGACATAAAGAGA+AGG 0.573953 4_1:-44765447 None:intergenic
TATCTCATGCTGGCAGTGGA+CGG 0.575835 4_1:-44768047 None:intergenic
CAATGGTTCTCACTCGCTGT+AGG 0.577319 4_1:+44767902 Msa0549550:three_prime_UTR
ATCTACAACACTAGCTGTTG+AGG 0.585209 4_1:-44766993 None:intergenic
ATATTGAACATGAGTCTGGT+AGG 0.588387 4_1:-44768186 None:intergenic
TTACAACATTGCTGAAAATG+CGG 0.588416 4_1:-44768093 None:intergenic
TCCCAAAGACATAAAGAGAA+GGG 0.588441 4_1:-44765446 None:intergenic
GGCAGCTGCTGCTAGTGTCA+GGG 0.590351 4_1:-44766972 None:intergenic
ACAAGGTTTGGCCTAATCTG+AGG 0.590525 4_1:-44765411 None:intergenic
TGATGAATTAAGTTGAGGGA+AGG 0.603091 4_1:-44767935 None:intergenic
TCACTGCAACTATCTCATGC+TGG 0.603777 4_1:-44768057 None:intergenic
AATGAAATACCTGGCTCTGT+GGG 0.604276 4_1:+44765370 Msa0549550:CDS
AAATTTCTGCACATTGAGTG+AGG 0.607970 4_1:+44767517 Msa0549550:three_prime_UTR
AATGCTAACGTGAAACTCCA+AGG 0.609152 4_1:-44766695 None:intergenic
GATCTCCTGCTAAATTCGCA+AGG 0.614662 4_1:+44767013 Msa0549550:CDS
TTAAATGAGAATCACAAAGA+GGG 0.615300 4_1:-44767145 None:intergenic
GAATGAAATACCTGGCTCTG+TGG 0.618928 4_1:+44765369 Msa0549550:CDS
AAGGGAAGCAGATGAAAACA+AGG 0.621514 4_1:-44765428 None:intergenic
AGTTACATGAATGAAATACC+TGG 0.624827 4_1:+44765361 Msa0549550:CDS
TAGGTTACTTTGTGTATCGG+TGG 0.628344 4_1:-44765073 None:intergenic
GTTATTCGAAATAGAGTCCG+AGG 0.628523 4_1:+44768209 Msa0549550:three_prime_UTR
TGATAATGGGAATGACACAT+AGG 0.631576 4_1:-44765092 None:intergenic
CGAGTTGGACTGTAAGCAGG+TGG 0.635678 4_1:-44767586 None:intergenic
AAATATTACAAAATATACAA+TGG 0.635722 4_1:-44767194 None:intergenic
ACAATTGGACTGTTGTCAAG+CGG 0.667940 4_1:-44767695 None:intergenic
AAGCGGAAATGTCATCCTTG+AGG 0.675341 4_1:-44767678 None:intergenic
TGGCTATGTCAAATGCAACA+CGG 0.695768 4_1:-44767770 None:intergenic
AGTACACACTACAAAGTACA+CGG 0.704863 4_1:-44767325 None:intergenic
TTCTGTGCAGACAACTACTG+TGG 0.708886 4_1:-44767857 None:intergenic
TTGCAGCCAAGACTGCACAA+TGG 0.723373 4_1:+44767885 Msa0549550:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTACAAAATATACAA+TGG - chr4_1:44767197-44767216 None:intergenic 10.0%
!! CTTTAATTATGTATGATAAT+GGG - chr4_1:44765108-44765127 None:intergenic 15.0%
!! TCTTTAATTATGTATGATAA+TGG - chr4_1:44765109-44765128 None:intergenic 15.0%
!! GAAATGCTATTAAATATTAT+AGG + chr4_1:44765251-44765270 Msa0549550:five_prime_UTR 15.0%
!!! ATTTTTTCTCAAATTATTAC+CGG + chr4_1:44765619-44765638 Msa0549550:intron 15.0%
!!! ATTCTTGCAAATTTTTTGTT+AGG - chr4_1:44765166-44765185 None:intergenic 20.0%
!! TTCATGTAACTTATTCTATA+AGG - chr4_1:44765352-44765371 None:intergenic 20.0%
!! ACATTAAATGAGAAATATCA+GGG - chr4_1:44765857-44765876 None:intergenic 20.0%
!! AACATTAAATGAGAAATATC+AGG - chr4_1:44765858-44765877 None:intergenic 20.0%
!! TTTACATCACATAACATAAA+AGG + chr4_1:44766545-44766564 Msa0549550:intron 20.0%
!!! ATATTGTTGATTATTGTTGT+TGG + chr4_1:44766767-44766786 Msa0549550:CDS 20.0%
!! TTAATATGATGAAGTTACAA+TGG + chr4_1:44766852-44766871 Msa0549550:intron 20.0%
!! TTATTATGAATGAAATGTCT+TGG - chr4_1:44767359-44767378 None:intergenic 20.0%
!! TATAGTTATTGAACAATTGA+AGG + chr4_1:44767494-44767513 Msa0549550:three_prime_UTR 20.0%
! AAACAGAATTTCCTTAACAT+AGG - chr4_1:44765209-44765228 None:intergenic 25.0%
! TAACAAAGAGAAGAACAAAA+AGG - chr4_1:44765504-44765523 None:intergenic 25.0%
! ATAACTTAAATCTTGAGTAC+TGG + chr4_1:44765885-44765904 Msa0549550:intron 25.0%
! TTCAAAATCAAGATACGATA+CGG - chr4_1:44766179-44766198 None:intergenic 25.0%
!!! ATTTTTCCGTATTGACATAT+CGG + chr4_1:44766199-44766218 Msa0549550:intron 25.0%
! AATGAGATTCAAGCATAAAA+AGG - chr4_1:44766389-44766408 None:intergenic 25.0%
! ATCACATAACATAAAAGGAA+AGG + chr4_1:44766550-44766569 Msa0549550:intron 25.0%
! ACAATAATCAACAATATTCC+TGG - chr4_1:44766764-44766783 None:intergenic 25.0%
!! TGATTATTGTTGTTGGATAT+TGG + chr4_1:44766774-44766793 Msa0549550:CDS 25.0%
!! GATTATTGTTGTTGGATATT+GGG + chr4_1:44766775-44766794 Msa0549550:CDS 25.0%
! TTAGTACATGTTTGAATTGA+CGG + chr4_1:44766829-44766848 Msa0549550:intron 25.0%
! AACTAGAGTTATCAACATAT+CGG - chr4_1:44766930-44766949 None:intergenic 25.0%
! TTAAATGAGAATCACAAAGA+GGG - chr4_1:44767148-44767167 None:intergenic 25.0%
! ATTAAATGAGAATCACAAAG+AGG - chr4_1:44767149-44767168 None:intergenic 25.0%
! AAAAGCTCACAATATGTATT+TGG + chr4_1:44767267-44767286 Msa0549550:three_prime_UTR 25.0%
! AAAGCTCACAATATGTATTT+GGG + chr4_1:44767268-44767287 Msa0549550:three_prime_UTR 25.0%
! ATACTTTCAAAAATACTGTG+AGG + chr4_1:44767399-44767418 Msa0549550:three_prime_UTR 25.0%
! AGATATAACTGTCAAGAATA+TGG - chr4_1:44767546-44767565 None:intergenic 25.0%
!!! GACAGTTATATCTATTTTTG+TGG + chr4_1:44767553-44767572 Msa0549550:three_prime_UTR 25.0%
!!! ATCTATTTTTGTGGATATCT+TGG + chr4_1:44767562-44767581 Msa0549550:three_prime_UTR 25.0%
!!! AAGATGATGAATTAAGTTGA+GGG - chr4_1:44767942-44767961 None:intergenic 25.0%
!! CTTTTATTATATTCTGGTCT+TGG - chr4_1:44768166-44768185 None:intergenic 25.0%
!!! TATACATCTGTTTTTATCCT+CGG - chr4_1:44768229-44768248 None:intergenic 25.0%
! ACATAGGTTACTTTGTGTAT+CGG - chr4_1:44765079-44765098 None:intergenic 30.0%
!!! TTTTTTGTTAGGTAGAAGCT+TGG - chr4_1:44765155-44765174 None:intergenic 30.0%
ATGAAGATCAACCTATGTTA+AGG + chr4_1:44765195-44765214 Msa0549550:five_prime_UTR 30.0%
GGAAATTCTGTTTGAATCAT+AGG + chr4_1:44765216-44765235 Msa0549550:five_prime_UTR 30.0%
CTGAAAGAAATAAGCTTGTA+TGG + chr4_1:44765306-44765325 Msa0549550:exon 30.0%
AGTTACATGAATGAAATACC+TGG + chr4_1:44765361-44765380 Msa0549550:CDS 30.0%
!!! ATCATCCATTTTGAAGTATC+GGG - chr4_1:44765686-44765705 None:intergenic 30.0%
!!! CATCATCCATTTTGAAGTAT+CGG - chr4_1:44765687-44765706 None:intergenic 30.0%
TATCGGTGCATGATAATTAT+CGG - chr4_1:44765830-44765849 None:intergenic 30.0%
AGTGTTATACGATATCCAAA+AGG - chr4_1:44765954-44765973 None:intergenic 30.0%
AAACAAAAGAAACCAGTCAT+AGG - chr4_1:44766074-44766093 None:intergenic 30.0%
!!! TATGACTGGTTTCTTTTGTT+TGG + chr4_1:44766073-44766092 Msa0549550:intron 30.0%
GTCAAGTCAATTATGAAACA+TGG - chr4_1:44766280-44766299 None:intergenic 30.0%
!!! GACTTGACATTTTGTTGTTT+TGG + chr4_1:44766292-44766311 Msa0549550:intron 30.0%
AAAAAGCTTAAAAGCTTTGC+AGG - chr4_1:44766359-44766378 None:intergenic 30.0%
ACATAACATAAAAGGAAAGG+AGG + chr4_1:44766553-44766572 Msa0549550:intron 30.0%
TTATTCATGTCCTAGCTATT+TGG + chr4_1:44766649-44766668 Msa0549550:intron 30.0%
TTCTTATCCAAATGCATGTA+TGG - chr4_1:44766899-44766918 None:intergenic 30.0%
! AACTCTAGTTTATTTGCTAC+AGG + chr4_1:44766940-44766959 Msa0549550:intron 30.0%
CAGATAAAGGTTAAAAAGAG+AGG - chr4_1:44767122-44767141 None:intergenic 30.0%
!!! TCGATCTAATGTTTTTTACG+GGG - chr4_1:44767174-44767193 None:intergenic 30.0%
!!! GTCGATCTAATGTTTTTTAC+GGG - chr4_1:44767175-44767194 None:intergenic 30.0%
!!! GGTCGATCTAATGTTTTTTA+CGG - chr4_1:44767176-44767195 None:intergenic 30.0%
ATAATAGAGCGAATACAGTT+TGG + chr4_1:44767375-44767394 Msa0549550:three_prime_UTR 30.0%
!!! CTATAGAGTTGTTTTTCTCT+AGG - chr4_1:44767479-44767498 None:intergenic 30.0%
TCAATATGTAATCTTCGAGT+TGG - chr4_1:44767604-44767623 None:intergenic 30.0%
! GAAGATGATGAATTAAGTTG+AGG - chr4_1:44767943-44767962 None:intergenic 30.0%
TTACAACATTGCTGAAAATG+CGG - chr4_1:44768096-44768115 None:intergenic 30.0%
! GGTAGGCTTTTATTATATTC+TGG - chr4_1:44768172-44768191 None:intergenic 30.0%
TAACATATTGAACATGAGTC+TGG - chr4_1:44768193-44768212 None:intergenic 30.0%
!! TTTTGTTTGCTAGCATCTTA+TGG - chr4_1:44768269-44768288 None:intergenic 30.0%
!! TGATAATGGGAATGACACAT+AGG - chr4_1:44765095-44765114 None:intergenic 35.0%
AAGCAGATGAAAACAAGGTT+TGG - chr4_1:44765426-44765445 None:intergenic 35.0%
TTCCCTTCTCTTTATGTCTT+TGG + chr4_1:44765444-44765463 Msa0549550:CDS 35.0%
TCCCTTCTCTTTATGTCTTT+GGG + chr4_1:44765445-44765464 Msa0549550:CDS 35.0%
TCCCAAAGACATAAAGAGAA+GGG - chr4_1:44765449-44765468 None:intergenic 35.0%
ACTCAGACTGAAATTGTGTT+TGG + chr4_1:44765556-44765575 Msa0549550:intron 35.0%
!!! TCATCCATTTTGAAGTATCG+GGG - chr4_1:44765685-44765704 None:intergenic 35.0%
!!! AGTACTGGTGTGTTCTTTTT+TGG + chr4_1:44765900-44765919 Msa0549550:intron 35.0%
! AGCACTAACAATGTTCCTTT+TGG + chr4_1:44765936-44765955 Msa0549550:intron 35.0%
TGGATATCGTATAACACTGA+TGG + chr4_1:44765956-44765975 Msa0549550:intron 35.0%
CAATTATGAAACATGGACAC+TGG - chr4_1:44766273-44766292 None:intergenic 35.0%
ATGATTGTCACCAAATAGCT+AGG - chr4_1:44766662-44766681 None:intergenic 35.0%
! TAGCTATTTGGTGACAATCA+TGG + chr4_1:44766661-44766680 Msa0549550:intron 35.0%
! AGCTATTTGGTGACAATCAT+GGG + chr4_1:44766662-44766681 Msa0549550:intron 35.0%
AATATTCCTGGTTGACGAAT+GGG - chr4_1:44766752-44766771 None:intergenic 35.0%
!!! CGATCTAATGTTTTTTACGG+GGG - chr4_1:44767173-44767192 None:intergenic 35.0%
AGTACACACTACAAAGTACA+CGG - chr4_1:44767328-44767347 None:intergenic 35.0%
! AAAAATACTGTGAGGAGTGT+AGG + chr4_1:44767407-44767426 Msa0549550:three_prime_UTR 35.0%
TTCTCTAGGCAATCAACTAA+TGG - chr4_1:44767465-44767484 None:intergenic 35.0%
AAATTTCTGCACATTGAGTG+AGG + chr4_1:44767517-44767536 Msa0549550:three_prime_UTR 35.0%
!! TGATGAATTAAGTTGAGGGA+AGG - chr4_1:44767938-44767957 None:intergenic 35.0%
CAACTATCTCATGGAACATT+TGG - chr4_1:44767965-44767984 None:intergenic 35.0%
GATTGTTTGCAACTATCTCA+TGG - chr4_1:44767974-44767993 None:intergenic 35.0%
! AGTTCTGGCTGAATTATCAT+TGG - chr4_1:44768006-44768025 None:intergenic 35.0%
! AGAATTTTTATGCGGAGTTC+TGG - chr4_1:44768021-44768040 None:intergenic 35.0%
GAACTCCGCATAAAAATTCT+TGG + chr4_1:44768021-44768040 Msa0549550:three_prime_UTR 35.0%
! GGCTTCCAAGAATTTTTATG+CGG - chr4_1:44768029-44768048 None:intergenic 35.0%
ATATTGAACATGAGTCTGGT+AGG - chr4_1:44768189-44768208 None:intergenic 35.0%
TCTTATATTTAGCGGCGCTA+AGG + chr4_1:44765045-44765064 Msa0549550:five_prime_UTR 40.0%
! TAGGTTACTTTGTGTATCGG+TGG - chr4_1:44765076-44765095 None:intergenic 40.0%
! CTTTCAGCTGAAGCTTCTTT+TGG - chr4_1:44765293-44765312 None:intergenic 40.0%
!! AATGAAATACCTGGCTCTGT+GGG + chr4_1:44765370-44765389 Msa0549550:CDS 40.0%
AAGGGAAGCAGATGAAAACA+AGG - chr4_1:44765431-44765450 None:intergenic 40.0%
CTCCCAAAGACATAAAGAGA+AGG - chr4_1:44765450-44765469 None:intergenic 40.0%
!! CAAATTATTACCGGTGTCGT+CGG + chr4_1:44765628-44765647 Msa0549550:intron 40.0%
ATACTCTCCTGTTACGTATC+GGG - chr4_1:44765739-44765758 None:intergenic 40.0%
GATACTCTCCTGTTACGTAT+CGG - chr4_1:44765740-44765759 None:intergenic 40.0%
ATACTCTCCTGATACGTATC+GGG - chr4_1:44765807-44765826 None:intergenic 40.0%
GATACTCTCCTGATACGTAT+CGG - chr4_1:44765808-44765827 None:intergenic 40.0%
AGAAATATCAGGGCACGTAT+CGG - chr4_1:44765847-44765866 None:intergenic 40.0%
!! AACACTGATGGTGCTCTTTT+TGG + chr4_1:44765968-44765987 Msa0549550:intron 40.0%
!! ACACTGATGGTGCTCTTTTT+GGG + chr4_1:44765969-44765988 Msa0549550:intron 40.0%
AATCAAGATACGATACGGCT+GGG - chr4_1:44766174-44766193 None:intergenic 40.0%
AAATCAAGATACGATACGGC+TGG - chr4_1:44766175-44766194 None:intergenic 40.0%
! ACTGCACCGATATGTCAATA+CGG - chr4_1:44766208-44766227 None:intergenic 40.0%
TCCATATCGTATCTCGTATC+CGG + chr4_1:44766234-44766253 Msa0549550:intron 40.0%
AAAAGCTTTGCAGGATCTCA+GGG - chr4_1:44766350-44766369 None:intergenic 40.0%
TAAAAGCTTTGCAGGATCTC+AGG - chr4_1:44766351-44766370 None:intergenic 40.0%
! TTTGGTGACAATCATGGGTT+TGG + chr4_1:44766667-44766686 Msa0549550:CDS 40.0%
! TCATGGGTTTGGTTATACCT+TGG + chr4_1:44766678-44766697 Msa0549550:CDS 40.0%
AATGCTAACGTGAAACTCCA+AGG - chr4_1:44766698-44766717 None:intergenic 40.0%
TTGGAGTTTCACGTTAGCAT+TGG + chr4_1:44766697-44766716 Msa0549550:CDS 40.0%
!! TTCACGTTAGCATTGGTAGA+TGG + chr4_1:44766704-44766723 Msa0549550:CDS 40.0%
CAATATTCCTGGTTGACGAA+TGG - chr4_1:44766753-44766772 None:intergenic 40.0%
ATCTACAACACTAGCTGTTG+AGG - chr4_1:44766996-44767015 None:intergenic 40.0%
AAGATCCTTGCGAATTTAGC+AGG - chr4_1:44767021-44767040 None:intergenic 40.0%
! ACCTGCAGCAAAGCTTTATA+GGG - chr4_1:44767048-44767067 None:intergenic 40.0%
! TACCTGCAGCAAAGCTTTAT+AGG - chr4_1:44767049-44767068 None:intergenic 40.0%
GTACAGGATATCTGCAGTTA+TGG + chr4_1:44767066-44767085 Msa0549550:CDS 40.0%
! CAGTTATGGCTTTTGTGTCA+TGG + chr4_1:44767080-44767099 Msa0549550:CDS 40.0%
GTTAAAAAGAGAGGATGCCA+AGG - chr4_1:44767113-44767132 None:intergenic 40.0%
ACAAAGAGGGTAGCAGATAA+AGG - chr4_1:44767135-44767154 None:intergenic 40.0%
TGAAAACCAAGAGAGTTCTC+AGG + chr4_1:44767621-44767640 Msa0549550:three_prime_UTR 40.0%
!! CAAATTTGTTAGCAATCCCC+AGG + chr4_1:44767649-44767668 Msa0549550:three_prime_UTR 40.0%
ACAATTGGACTGTTGTCAAG+CGG - chr4_1:44767698-44767717 None:intergenic 40.0%
TGGCTATGTCAAATGCAACA+CGG - chr4_1:44767773-44767792 None:intergenic 40.0%
CATTTGACATAGCCATAGCT+TGG + chr4_1:44767778-44767797 Msa0549550:three_prime_UTR 40.0%
GTTATTCGAAATAGAGTCCG+AGG + chr4_1:44768209-44768228 Msa0549550:three_prime_UTR 40.0%
!! GAATGAAATACCTGGCTCTG+TGG + chr4_1:44765369-44765388 Msa0549550:CDS 45.0%
ACAAGGTTTGGCCTAATCTG+AGG - chr4_1:44765414-44765433 None:intergenic 45.0%
TCTACAGCTACACAGCTTTC+TGG + chr4_1:44765476-44765495 Msa0549550:CDS 45.0%
GAAGCCCCGATACTTCAAAA+TGG + chr4_1:44765678-44765697 Msa0549550:intron 45.0%
!! GTTACGTATCGGGAAGTATC+AGG - chr4_1:44765729-44765748 None:intergenic 45.0%
GATACTTCCCGATACGTAAC+AGG + chr4_1:44765729-44765748 Msa0549550:intron 45.0%
! TGATACGTATCGGGAAGTGT+CGG - chr4_1:44765798-44765817 None:intergenic 45.0%
CCATATCGTATCTCGTATCC+GGG + chr4_1:44766235-44766254 Msa0549550:intron 45.0%
AAATGTCCCATTCGTCAACC+AGG + chr4_1:44766743-44766762 Msa0549550:CDS 45.0%
CGTCAGTCCATACATGCATT+TGG + chr4_1:44766889-44766908 Msa0549550:intron 45.0%
GATCTCCTGCTAAATTCGCA+AGG + chr4_1:44767013-44767032 Msa0549550:CDS 45.0%
TAAAGCTTTGCTGCAGGTAC+AGG + chr4_1:44767050-44767069 Msa0549550:CDS 45.0%
TGTGTCATGGTTTCTGTCCT+TGG + chr4_1:44767093-44767112 Msa0549550:CDS 45.0%
AAGCGGAAATGTCATCCTTG+AGG - chr4_1:44767681-44767700 None:intergenic 45.0%
GTAGACTGTAGCTGCACAAT+TGG - chr4_1:44767713-44767732 None:intergenic 45.0%
CGTCTTAGATGAGACTATGC+AGG - chr4_1:44767743-44767762 None:intergenic 45.0%
TTGACATAGCCATAGCTTGG+AGG + chr4_1:44767781-44767800 Msa0549550:three_prime_UTR 45.0%
TTCTGTGCAGACAACTACTG+TGG - chr4_1:44767860-44767879 None:intergenic 45.0%
TGAGAACCATTGTGCAGTCT+TGG - chr4_1:44767894-44767913 None:intergenic 45.0%
TCACTGCAACTATCTCATGC+TGG - chr4_1:44768060-44768079 None:intergenic 45.0%
!! AAAAAAATAAATTTAATCTT+CGG - chr4_1:44765762-44765781 None:intergenic 5.0%
!!! ATATTTGTTATTTAAAAAAA+TGG + chr4_1:44766100-44766119 Msa0549550:intron 5.0%
!!! AAAAGAAATATTTAAATTTT+AGG + chr4_1:44766427-44766446 Msa0549550:intron 5.0%
GCCAGCTTCATCCTCAGATT+AGG + chr4_1:44765400-44765419 Msa0549550:CDS 50.0%
GCCTAATCTGAGGATGAAGC+TGG - chr4_1:44765404-44765423 None:intergenic 50.0%
!! GGGAAGTATCAGGCAGGTAT+CGG - chr4_1:44765719-44765738 None:intergenic 50.0%
GACACTTCCCGATACGTATC+AGG + chr4_1:44765797-44765816 Msa0549550:intron 50.0%
ATGTGCTACGAGCCTATGAC+TGG + chr4_1:44766059-44766078 Msa0549550:intron 50.0%
CCCGGATACGAGATACGATA+TGG - chr4_1:44766238-44766257 None:intergenic 50.0%
GCCCTATAAAGCTTTGCTGC+AGG + chr4_1:44767044-44767063 Msa0549550:CDS 50.0%
!! CTTCGAGTTGGACTGTAAGC+AGG - chr4_1:44767592-44767611 None:intergenic 50.0%
GCTTTGCCTGAGAACTCTCT+TGG - chr4_1:44767630-44767649 None:intergenic 50.0%
AAATGTCATCCTTGAGGCCG+AGG - chr4_1:44767675-44767694 None:intergenic 50.0%
CCATAGCTTGGAGGTTCCAA+CGG + chr4_1:44767790-44767809 Msa0549550:three_prime_UTR 50.0%
TGCTGCTGTCATGATTCCGT+TGG - chr4_1:44767809-44767828 None:intergenic 50.0%
TTGCAGCCAAGACTGCACAA+TGG + chr4_1:44767885-44767904 Msa0549550:three_prime_UTR 50.0%
CAATGGTTCTCACTCGCTGT+AGG + chr4_1:44767902-44767921 Msa0549550:three_prime_UTR 50.0%
TATCTCATGCTGGCAGTGGA+CGG - chr4_1:44768050-44768069 None:intergenic 50.0%
CAACTATCTCATGCTGGCAG+TGG - chr4_1:44768054-44768073 None:intergenic 50.0%
!! CGTATCGGGAAGTATCAGGC+AGG - chr4_1:44765725-44765744 None:intergenic 55.0%
!! CACTGGACATCTCTGAAGCC+CGG - chr4_1:44766256-44766275 None:intergenic 55.0%
! CGAGTTGGACTGTAAGCAGG+TGG - chr4_1:44767589-44767608 None:intergenic 55.0%
TGTTAGCAATCCCCAGGCCT+CGG + chr4_1:44767655-44767674 Msa0549550:three_prime_UTR 55.0%
CCGTTGGAACCTCCAAGCTA+TGG - chr4_1:44767793-44767812 None:intergenic 55.0%
! GCAGCAGTTTGCTCCTGAAC+CGG + chr4_1:44767823-44767842 Msa0549550:three_prime_UTR 55.0%
! TACTGTGGTAGCGCTAGTGC+CGG - chr4_1:44767845-44767864 None:intergenic 55.0%
GTCATCAACGCCGACGACAC+CGG - chr4_1:44765641-44765660 None:intergenic 60.0%
GGCAGCTGCTGCTAGTGTCA+GGG - chr4_1:44766975-44766994 None:intergenic 60.0%
AGGCAGCTGCTGCTAGTGTC+AGG - chr4_1:44766976-44766995 None:intergenic 60.0%
GCACTTGTGCCCACAGAGCC+AGG - chr4_1:44765382-44765401 None:intergenic 65.0%
ATCCTTGAGGCCGAGGCCTG+GGG - chr4_1:44767668-44767687 None:intergenic 65.0%
CATCCTTGAGGCCGAGGCCT+GGG - chr4_1:44767669-44767688 None:intergenic 65.0%
TCATCCTTGAGGCCGAGGCC+TGG - chr4_1:44767670-44767689 None:intergenic 65.0%
!! GGTAGCGCTAGTGCCGGTTC+AGG - chr4_1:44767839-44767858 None:intergenic 65.0%
ATCCCCAGGCCTCGGCCTCA+AGG + chr4_1:44767663-44767682 Msa0549550:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44765044 44768288 44765044 ID=Msa0549550;Name=Msa0549550
chr4_1 mRNA 44765044 44768288 44765044 ID=Msa0549550-mRNA-1;Parent=Msa0549550;Name=Msa0549550-mRNA-1;_AED=0.17;_eAED=0.17;_QI=281|1|1|1|0.5|0.33|3|1132|166
chr4_1 exon 44765044 44765497 44765044 ID=Msa0549550-mRNA-1:exon:11680;Parent=Msa0549550-mRNA-1
chr4_1 exon 44766664 44766796 44766664 ID=Msa0549550-mRNA-1:exon:11681;Parent=Msa0549550-mRNA-1
chr4_1 exon 44766962 44768288 44766962 ID=Msa0549550-mRNA-1:exon:11682;Parent=Msa0549550-mRNA-1
chr4_1 five_prime_UTR 44765044 44765324 44765044 ID=Msa0549550-mRNA-1:five_prime_utr;Parent=Msa0549550-mRNA-1
chr4_1 CDS 44765325 44765497 44765325 ID=Msa0549550-mRNA-1:cds;Parent=Msa0549550-mRNA-1
chr4_1 CDS 44766664 44766796 44766664 ID=Msa0549550-mRNA-1:cds;Parent=Msa0549550-mRNA-1
chr4_1 CDS 44766962 44767156 44766962 ID=Msa0549550-mRNA-1:cds;Parent=Msa0549550-mRNA-1
chr4_1 three_prime_UTR 44767157 44768288 44767157 ID=Msa0549550-mRNA-1:three_prime_utr;Parent=Msa0549550-mRNA-1
Gene Sequence

>Msa0549550

ATGGTTAAGTTATATAGTTCAGAACCTTATAGAATAAGTTACATGAATGAAATACCTGGCTCTGTGGGCACAAGTGCCAGCTTCATCCTCAGATTAGGCCAAACCTTGTTTTCATCTGCTTCCCTTCTCTTTATGTCTTTGGGAGTTGAATTCTACAGCTACACAGCTTTCTGCTATTTGGTGACAATCATGGGTTTGGTTATACCTTGGAGTTTCACGTTAGCATTGGTAGATGGATACTCTGTACTAGTCAAATGTCCCATTCGTCAACCAGGAATATTGTTGATTATTGTTGTTGGATATTGGGTATTATCAACCCTGACACTAGCAGCAGCTGCCTCAACAGCTAGTGTTGTAGATCTCCTGCTAAATTCGCAAGGATCTTTTTGCCCTATAAAGCTTTGCTGCAGGTACAGGATATCTGCAGTTATGGCTTTTGTGTCATGGTTTCTGTCCTTGGCATCCTCTCTTTTTAACCTTTATCTGCTACCCTCTTTGTGA

Protein sequence

>Msa0549550

MVKLYSSEPYRISYMNEIPGSVGTSASFILRLGQTLFSSASLLFMSLGVEFYSYTAFCYLVTIMGLVIPWSFTLALVDGYSVLVKCPIRQPGILLIIVVGYWVLSTLTLAAAASTASVVDLLLNSQGSFCPIKLCCRYRISAVMAFVSWFLSLASSLFNLYLLPSL*