AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0623360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623360 MtrunA17_Chr4g0075091 96.629 267 9 0 1 267 1 267 0.0 544
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623360 AT1G62250.3 68.919 222 65 3 50 267 46 267 6.11e-107 311
Msa0623360 AT1G62250.1 68.919 222 65 3 50 267 46 267 6.11e-107 311
Msa0623360 AT1G62250.2 64.045 178 60 3 50 223 46 223 1.10e-76 232

Find 69 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATTGAAGAGTCTTTAC+AGG 0.293625 4_3:-566328 None:intergenic
AAGTTGAGTCTTGGTATAAA+TGG 0.315377 4_3:-564693 None:intergenic
GGTGCACTGATGAGGGATTA+AGG 0.315940 4_3:+565833 Msa0623360:CDS
CATAGGCTTGAGCTGAAATA+AGG 0.326137 4_3:-564485 None:intergenic
CAAGGACTTCCATAAGGTTT+AGG 0.326518 4_3:-564784 None:intergenic
TTCTTAGTTCATCCTTCTCT+TGG 0.339304 4_3:+564818 Msa0623360:CDS
TTTCAGGAGTTCATCACTGC+TGG 0.339359 4_3:+565790 Msa0623360:intron
GTGTTTCACATTGGCTGGCT+AGG 0.379694 4_3:+566634 Msa0623360:three_prime_UTR
TCACCTTGTTCAGGAGATAT+AGG 0.401117 4_3:+565048 Msa0623360:CDS
GACTCTTCAATTAGAGCAAA+CGG 0.420903 4_3:+566336 Msa0623360:CDS
TCATGGTTCAAACATGTTAA+CGG 0.429275 4_3:+564642 Msa0623360:exon
ACATAGCCATCACCTTGTTC+AGG 0.430952 4_3:+565039 Msa0623360:CDS
TTCAGGAGTTCATCACTGCT+GGG 0.433998 4_3:+565791 Msa0623360:intron
GAGCTGTGTTTCACATTGGC+TGG 0.438773 4_3:+566629 Msa0623360:three_prime_UTR
ATAAGGAAATAATGAAAAGT+TGG 0.439347 4_3:-564468 None:intergenic
TGTTTCACATTGGCTGGCTA+GGG 0.444223 4_3:+566635 Msa0623360:three_prime_UTR
GATCTCATTGTCTATACTCT+TGG 0.455261 4_3:-566572 None:intergenic
GGAAATAATGAAAAGTTGGA+TGG 0.463869 4_3:-564464 None:intergenic
GCCTATGCTTACCCTCAAAC+AGG 0.467145 4_3:+564501 Msa0623360:five_prime_UTR
TGCTGAAGACTAATCGCATT+CGG 0.468961 4_3:-566399 None:intergenic
TGGAAGTTTAGAATAGCTCT+TGG 0.469554 4_3:-564673 None:intergenic
CTGCATGGATTGTTGAGAAA+AGG 0.482340 4_3:-566607 None:intergenic
TTACTACAAGGACTTCCATA+AGG 0.484595 4_3:-564790 None:intergenic
CCCCACCGACTATTGTTAGA+TGG 0.484658 4_3:+566120 Msa0623360:CDS
GTTGTGTTGAAGTTGAGTCT+TGG 0.496097 4_3:-564702 None:intergenic
ATTAGAGCAAACGGCAGTGA+TGG 0.502471 4_3:+566345 Msa0623360:CDS
AGCAATATCATATTATATCA+TGG 0.512431 4_3:+564625 Msa0623360:five_prime_UTR
GGGGTGAATGCATATGAACT+TGG 0.519443 4_3:+565811 Msa0623360:CDS
ATCTAAAATCATATCTAATG+AGG 0.520867 4_3:+565933 Msa0623360:CDS
AAGAGGGATATACCTGTTTG+AGG 0.523927 4_3:-564513 None:intergenic
AGAGGGATATACCTGTTTGA+GGG 0.543625 4_3:-564512 None:intergenic
GAAATAATGAAAAGTTGGAT+GGG 0.545995 4_3:-564463 None:intergenic
AATTTCACTGATCGTGGTGG+AGG 0.547938 4_3:+565071 Msa0623360:CDS
ATTGAAGCAATGCAAAGTTA+CGG 0.554118 4_3:+565892 Msa0623360:CDS
TTAGAGCAAACGGCAGTGAT+GGG 0.555480 4_3:+566346 Msa0623360:CDS
GAAAGAGCTTACTGACATGA+AGG 0.564447 4_3:+565855 Msa0623360:CDS
CTTACTGACATGAAGGACTC+TGG 0.574764 4_3:+565862 Msa0623360:CDS
ACCATCTAACAATAGTCGGT+GGG 0.578238 4_3:-566121 None:intergenic
TGAAAAGCGACACAAATGCC+TGG 0.580887 4_3:+564846 Msa0623360:CDS
CTAAGAAATATGTTACTACA+AGG 0.583377 4_3:-564802 None:intergenic
CCATCTAACAATAGTCGGTG+GGG 0.583403 4_3:-566120 None:intergenic
ATGTGAAACACAGCTCTGCA+TGG 0.593881 4_3:-566622 None:intergenic
ATTAGTCTTCAGCACCCTTG+AGG 0.597661 4_3:+566408 Msa0623360:CDS
ATATCTCCTGAACAAGGTGA+TGG 0.598635 4_3:-565045 None:intergenic
GACCATCTAACAATAGTCGG+TGG 0.598967 4_3:-566122 None:intergenic
TGAACTTGGGTGCACTGATG+AGG 0.602547 4_3:+565825 Msa0623360:CDS
TGCAGAGCTGTGTTTCACAT+TGG 0.606651 4_3:+566625 Msa0623360:three_prime_UTR
ACCTGTTTGAGGGTAAGCAT+AGG 0.609631 4_3:-564502 None:intergenic
GATGACCATCTAACAATAGT+CGG 0.613459 4_3:-566125 None:intergenic
ATTGATATACATAAAATACA+TGG 0.618400 4_3:-566754 None:intergenic
TATAGGAATTTCACTGATCG+TGG 0.622160 4_3:+565065 Msa0623360:CDS
AAGCAATGCAAAGTTACGGT+GGG 0.622956 4_3:+565896 Msa0623360:CDS
ATGTAAATTACTGACCTCAA+GGG 0.624330 4_3:-566422 None:intergenic
GAAGTGAGACTTCAGTGGAA+AGG 0.627135 4_3:+566167 Msa0623360:CDS
GAACTTGGGTGCACTGATGA+GGG 0.632248 4_3:+565826 Msa0623360:CDS
GGGTGAATGCATATGAACTT+GGG 0.632813 4_3:+565812 Msa0623360:CDS
CATCTAACAATAGTCGGTGG+GGG 0.633024 4_3:-566119 None:intergenic
TCAGGAGTTCATCACTGCTG+GGG 0.635874 4_3:+565792 Msa0623360:intron
ATTCCTATATCTCCTGAACA+AGG 0.635905 4_3:-565051 None:intergenic
GAAGCAATGCAAAGTTACGG+TGG 0.636433 4_3:+565895 Msa0623360:CDS
AGGAATTTCACTGATCGTGG+TGG 0.644671 4_3:+565068 Msa0623360:CDS
GTCTATACTCTTGGCCACTG+TGG 0.644921 4_3:-566563 None:intergenic
ATTCGGCTAGCAACAACTGA+CGG 0.655387 4_3:-566382 None:intergenic
TGGCTATGTTGCGTGAAGAA+CGG 0.675675 4_3:-565025 None:intergenic
AGTCTCACTTCATCTGACAC+AGG 0.679981 4_3:-566155 None:intergenic
CAGATGAAGTGAGACTTCAG+TGG 0.693954 4_3:+566162 Msa0623360:CDS
AGATTGATGAGTGCATTCTG+TGG 0.715212 4_3:+566063 Msa0623360:intron
ATGATATAATTGCAGCAGTG+TGG 0.719749 4_3:+564969 Msa0623360:intron
TGCAGGTAGTGAGTCCACAG+TGG 0.754596 4_3:+566549 Msa0623360:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAGATATAAAAACATA+AGG - chr4_3:564539-564558 None:intergenic 15.0%
!! CTTTCTATTAATTAATTTCT+TGG + chr4_3:564589-564608 Msa0623360:intron 15.0%
!! AGACTAATAAATAAATCAAA+TGG - chr4_3:564920-564939 None:intergenic 15.0%
!! AAAATTTATTTGCATAACAA+AGG + chr4_3:566468-566487 Msa0623360:intron 15.0%
!! ATTGATATACATAAAATACA+TGG - chr4_3:566757-566776 None:intergenic 15.0%
!!! GTATATATAATGATTTTTAC+TGG - chr4_3:566827-566846 None:intergenic 15.0%
!! TAGATAGATATAAAAACATA+AGG - chr4_3:564539-564558 None:intergenic 15.0%
!! CTTTCTATTAATTAATTTCT+TGG + chr4_3:564589-564608 Msa0623360:intron 15.0%
!! AGACTAATAAATAAATCAAA+TGG - chr4_3:564920-564939 None:intergenic 15.0%
!! AAAATTTATTTGCATAACAA+AGG + chr4_3:566468-566487 Msa0623360:intron 15.0%
!! ATTGATATACATAAAATACA+TGG - chr4_3:566757-566776 None:intergenic 15.0%
!!! GTATATATAATGATTTTTAC+TGG - chr4_3:566827-566846 None:intergenic 15.0%
!! ATAAGGAAATAATGAAAAGT+TGG - chr4_3:564471-564490 None:intergenic 20.0%
!! ATATAAAAACATAAGGAAGA+GGG - chr4_3:564532-564551 None:intergenic 20.0%
!!! TAATTTCTTGGTTATTTTGA+AGG + chr4_3:564601-564620 Msa0623360:intron 20.0%
!!! AATTTCTTGGTTATTTTGAA+GGG + chr4_3:564602-564621 Msa0623360:intron 20.0%
!! AGCAATATCATATTATATCA+TGG + chr4_3:564625-564644 Msa0623360:five_prime_UTR 20.0%
!!! TTTTCTTTTAGTGATTGATA+TGG + chr4_3:564939-564958 Msa0623360:intron 20.0%
!! TATAAGGAATGCATAAAAAT+GGG - chr4_3:565283-565302 None:intergenic 20.0%
!!! ATCTAAAATCATATCTAATG+AGG + chr4_3:565933-565952 Msa0623360:CDS 20.0%
!!! TTCATGTTTTTTTTTCTACT+AGG + chr4_3:566258-566277 Msa0623360:intron 20.0%
!! ATAAGGAAATAATGAAAAGT+TGG - chr4_3:564471-564490 None:intergenic 20.0%
!! ATATAAAAACATAAGGAAGA+GGG - chr4_3:564532-564551 None:intergenic 20.0%
!!! TAATTTCTTGGTTATTTTGA+AGG + chr4_3:564601-564620 Msa0623360:intron 20.0%
!!! AATTTCTTGGTTATTTTGAA+GGG + chr4_3:564602-564621 Msa0623360:intron 20.0%
!! AGCAATATCATATTATATCA+TGG + chr4_3:564625-564644 Msa0623360:five_prime_UTR 20.0%
!!! TTTTCTTTTAGTGATTGATA+TGG + chr4_3:564939-564958 Msa0623360:intron 20.0%
!! TATAAGGAATGCATAAAAAT+GGG - chr4_3:565283-565302 None:intergenic 20.0%
!!! ATCTAAAATCATATCTAATG+AGG + chr4_3:565933-565952 Msa0623360:CDS 20.0%
!!! TTCATGTTTTTTTTTCTACT+AGG + chr4_3:566258-566277 Msa0623360:intron 20.0%
! GAAATAATGAAAAGTTGGAT+GGG - chr4_3:564466-564485 None:intergenic 25.0%
! GATATAAAAACATAAGGAAG+AGG - chr4_3:564533-564552 None:intergenic 25.0%
! CTAAGAAATATGTTACTACA+AGG - chr4_3:564805-564824 None:intergenic 25.0%
!! TTTAGTGATTGATATGGTTT+TGG + chr4_3:564945-564964 Msa0623360:intron 25.0%
!! ATTTTCAATTATGATGCTAG+AGG - chr4_3:565122-565141 None:intergenic 25.0%
! ATAAGGAATGCATAAAAATG+GGG - chr4_3:565282-565301 None:intergenic 25.0%
! CTATAAGGAATGCATAAAAA+TGG - chr4_3:565284-565303 None:intergenic 25.0%
! CTGGTTTAATTAAGTGTAAT+AGG + chr4_3:565311-565330 Msa0623360:intron 25.0%
! CTAATTAGAGAGTTCAAATT+CGG - chr4_3:565355-565374 None:intergenic 25.0%
! AAACTCTATGTTTGAATTTG+TGG + chr4_3:565395-565414 Msa0623360:intron 25.0%
! ATGTTGAGTTATACAAGAAA+GGG - chr4_3:565685-565704 None:intergenic 25.0%
!! GATTTACGTTTTTCATTTTC+AGG + chr4_3:565774-565793 Msa0623360:intron 25.0%
!! AGCAAATGCATATTTTATGA+AGG + chr4_3:566205-566224 Msa0623360:CDS 25.0%
!! GCAAATGCATATTTTATGAA+GGG + chr4_3:566206-566225 Msa0623360:CDS 25.0%
!!! ATGTTTTTTTTTCTACTAGG+TGG + chr4_3:566261-566280 Msa0623360:intron 25.0%
!!! TGTTTTTTTTTCTACTAGGT+GGG + chr4_3:566262-566281 Msa0623360:intron 25.0%
!! AATGATTTTTACTGGACATA+AGG - chr4_3:566819-566838 None:intergenic 25.0%
! GAAATAATGAAAAGTTGGAT+GGG - chr4_3:564466-564485 None:intergenic 25.0%
! GATATAAAAACATAAGGAAG+AGG - chr4_3:564533-564552 None:intergenic 25.0%
! CTAAGAAATATGTTACTACA+AGG - chr4_3:564805-564824 None:intergenic 25.0%
!! TTTAGTGATTGATATGGTTT+TGG + chr4_3:564945-564964 Msa0623360:intron 25.0%
!! ATTTTCAATTATGATGCTAG+AGG - chr4_3:565122-565141 None:intergenic 25.0%
! ATAAGGAATGCATAAAAATG+GGG - chr4_3:565282-565301 None:intergenic 25.0%
! CTATAAGGAATGCATAAAAA+TGG - chr4_3:565284-565303 None:intergenic 25.0%
! CTGGTTTAATTAAGTGTAAT+AGG + chr4_3:565311-565330 Msa0623360:intron 25.0%
! CTAATTAGAGAGTTCAAATT+CGG - chr4_3:565355-565374 None:intergenic 25.0%
! AAACTCTATGTTTGAATTTG+TGG + chr4_3:565395-565414 Msa0623360:intron 25.0%
! ATGTTGAGTTATACAAGAAA+GGG - chr4_3:565685-565704 None:intergenic 25.0%
!! GATTTACGTTTTTCATTTTC+AGG + chr4_3:565774-565793 Msa0623360:intron 25.0%
!! AGCAAATGCATATTTTATGA+AGG + chr4_3:566205-566224 Msa0623360:CDS 25.0%
!! GCAAATGCATATTTTATGAA+GGG + chr4_3:566206-566225 Msa0623360:CDS 25.0%
!!! ATGTTTTTTTTTCTACTAGG+TGG + chr4_3:566261-566280 Msa0623360:intron 25.0%
!!! TGTTTTTTTTTCTACTAGGT+GGG + chr4_3:566262-566281 Msa0623360:intron 25.0%
!! AATGATTTTTACTGGACATA+AGG - chr4_3:566819-566838 None:intergenic 25.0%
GGAAATAATGAAAAGTTGGA+TGG - chr4_3:564467-564486 None:intergenic 30.0%
TCATGGTTCAAACATGTTAA+CGG + chr4_3:564642-564661 Msa0623360:exon 30.0%
AAGTTGAGTCTTGGTATAAA+TGG - chr4_3:564696-564715 None:intergenic 30.0%
!! TCTACTTTTCCTAAACCTTA+TGG + chr4_3:564775-564794 Msa0623360:CDS 30.0%
ACGTTGTACGTTGTTATAAT+AGG + chr4_3:565216-565235 Msa0623360:intron 30.0%
TAAACCAGCTCAAAACTATA+AGG - chr4_3:565299-565318 None:intergenic 30.0%
! GAACTCTCTAATTAGTTCTT+TGG + chr4_3:565360-565379 Msa0623360:intron 30.0%
! GTTTGAATTTGTGGTGATTT+TGG + chr4_3:565404-565423 Msa0623360:intron 30.0%
GATCTTGTTGAATCTTCAAA+TGG + chr4_3:565446-565465 Msa0623360:intron 30.0%
CATGTTGAGTTATACAAGAA+AGG - chr4_3:565686-565705 None:intergenic 30.0%
ACCTCTTATTGGAATATAGA+GGG - chr4_3:565754-565773 None:intergenic 30.0%
AAACGTAAATCACCTCTTAT+TGG - chr4_3:565765-565784 None:intergenic 30.0%
ATTGAAGCAATGCAAAGTTA+CGG + chr4_3:565892-565911 Msa0623360:CDS 30.0%
AGATATCGAGTTACCTTATT+TGG + chr4_3:566021-566040 Msa0623360:intron 30.0%
CACAAAAAACATGCCAAATA+AGG - chr4_3:566037-566056 None:intergenic 30.0%
! TGCATATTTTATGAAGGGAA+TGG + chr4_3:566211-566230 Msa0623360:CDS 30.0%
TCTAATTGAAGAGTCTTTAC+AGG - chr4_3:566331-566350 None:intergenic 30.0%
ATGTAAATTACTGACCTCAA+GGG - chr4_3:566425-566444 None:intergenic 30.0%
AATGTAAATTACTGACCTCA+AGG - chr4_3:566426-566445 None:intergenic 30.0%
AAGTGTATAGACATATGGTT+TGG - chr4_3:566497-566516 None:intergenic 30.0%
GGAAATAATGAAAAGTTGGA+TGG - chr4_3:564467-564486 None:intergenic 30.0%
TCATGGTTCAAACATGTTAA+CGG + chr4_3:564642-564661 Msa0623360:exon 30.0%
AAGTTGAGTCTTGGTATAAA+TGG - chr4_3:564696-564715 None:intergenic 30.0%
!! TCTACTTTTCCTAAACCTTA+TGG + chr4_3:564775-564794 Msa0623360:CDS 30.0%
ACGTTGTACGTTGTTATAAT+AGG + chr4_3:565216-565235 Msa0623360:intron 30.0%
TAAACCAGCTCAAAACTATA+AGG - chr4_3:565299-565318 None:intergenic 30.0%
! GAACTCTCTAATTAGTTCTT+TGG + chr4_3:565360-565379 Msa0623360:intron 30.0%
! GTTTGAATTTGTGGTGATTT+TGG + chr4_3:565404-565423 Msa0623360:intron 30.0%
GATCTTGTTGAATCTTCAAA+TGG + chr4_3:565446-565465 Msa0623360:intron 30.0%
CATGTTGAGTTATACAAGAA+AGG - chr4_3:565686-565705 None:intergenic 30.0%
ACCTCTTATTGGAATATAGA+GGG - chr4_3:565754-565773 None:intergenic 30.0%
AAACGTAAATCACCTCTTAT+TGG - chr4_3:565765-565784 None:intergenic 30.0%
ATTGAAGCAATGCAAAGTTA+CGG + chr4_3:565892-565911 Msa0623360:CDS 30.0%
AGATATCGAGTTACCTTATT+TGG + chr4_3:566021-566040 Msa0623360:intron 30.0%
CACAAAAAACATGCCAAATA+AGG - chr4_3:566037-566056 None:intergenic 30.0%
! TGCATATTTTATGAAGGGAA+TGG + chr4_3:566211-566230 Msa0623360:CDS 30.0%
TCTAATTGAAGAGTCTTTAC+AGG - chr4_3:566331-566350 None:intergenic 30.0%
ATGTAAATTACTGACCTCAA+GGG - chr4_3:566425-566444 None:intergenic 30.0%
AATGTAAATTACTGACCTCA+AGG - chr4_3:566426-566445 None:intergenic 30.0%
AAGTGTATAGACATATGGTT+TGG - chr4_3:566497-566516 None:intergenic 30.0%
! TGGAAGTTTAGAATAGCTCT+TGG - chr4_3:564676-564695 None:intergenic 35.0%
TTACTACAAGGACTTCCATA+AGG - chr4_3:564793-564812 None:intergenic 35.0%
TTCTTAGTTCATCCTTCTCT+TGG + chr4_3:564818-564837 Msa0623360:CDS 35.0%
! CTTTTCACAATTCCAAGAGA+AGG - chr4_3:564833-564852 None:intergenic 35.0%
CCAAAGTAGATGAAGAATTG+AGG - chr4_3:564896-564915 None:intergenic 35.0%
CCTCAATTCTTCATCTACTT+TGG + chr4_3:564893-564912 Msa0623360:intron 35.0%
ATGATATAATTGCAGCAGTG+TGG + chr4_3:564969-564988 Msa0623360:intron 35.0%
ATTCCTATATCTCCTGAACA+AGG - chr4_3:565054-565073 None:intergenic 35.0%
TATAGGAATTTCACTGATCG+TGG + chr4_3:565065-565084 Msa0623360:CDS 35.0%
!!! CATTCCTTATAGTTTTGAGC+TGG + chr4_3:565292-565311 Msa0623360:intron 35.0%
TAGTTCTTTGGCAAAGCAAT+AGG + chr4_3:565372-565391 Msa0623360:intron 35.0%
! AACTTTTGCGAAAATCACGT+TGG + chr4_3:565470-565489 Msa0623360:intron 35.0%
CAATATGTATGCCACATTCA+CGG + chr4_3:565493-565512 Msa0623360:intron 35.0%
TCCCTCTATATTCCAATAAG+AGG + chr4_3:565750-565769 Msa0623360:intron 35.0%
CACCTCTTATTGGAATATAG+AGG - chr4_3:565755-565774 None:intergenic 35.0%
GATGACCATCTAACAATAGT+CGG - chr4_3:566128-566147 None:intergenic 35.0%
! ATTTTATGAAGGGAATGGCT+TGG + chr4_3:566216-566235 Msa0623360:CDS 35.0%
TCAGTAAACACATAGTAACC+AGG - chr4_3:566302-566321 None:intergenic 35.0%
GGTTACTATGTGTTTACTGA+AGG + chr4_3:566302-566321 Msa0623360:intron 35.0%
GACTCTTCAATTAGAGCAAA+CGG + chr4_3:566336-566355 Msa0623360:CDS 35.0%
CTAGCAAGTGTATAGACATA+TGG - chr4_3:566502-566521 None:intergenic 35.0%
GATCTCATTGTCTATACTCT+TGG - chr4_3:566575-566594 None:intergenic 35.0%
! TGGAAGTTTAGAATAGCTCT+TGG - chr4_3:564676-564695 None:intergenic 35.0%
TTACTACAAGGACTTCCATA+AGG - chr4_3:564793-564812 None:intergenic 35.0%
TTCTTAGTTCATCCTTCTCT+TGG + chr4_3:564818-564837 Msa0623360:CDS 35.0%
! CTTTTCACAATTCCAAGAGA+AGG - chr4_3:564833-564852 None:intergenic 35.0%
CCAAAGTAGATGAAGAATTG+AGG - chr4_3:564896-564915 None:intergenic 35.0%
CCTCAATTCTTCATCTACTT+TGG + chr4_3:564893-564912 Msa0623360:intron 35.0%
ATGATATAATTGCAGCAGTG+TGG + chr4_3:564969-564988 Msa0623360:intron 35.0%
ATTCCTATATCTCCTGAACA+AGG - chr4_3:565054-565073 None:intergenic 35.0%
TATAGGAATTTCACTGATCG+TGG + chr4_3:565065-565084 Msa0623360:CDS 35.0%
!!! CATTCCTTATAGTTTTGAGC+TGG + chr4_3:565292-565311 Msa0623360:intron 35.0%
TAGTTCTTTGGCAAAGCAAT+AGG + chr4_3:565372-565391 Msa0623360:intron 35.0%
! AACTTTTGCGAAAATCACGT+TGG + chr4_3:565470-565489 Msa0623360:intron 35.0%
CAATATGTATGCCACATTCA+CGG + chr4_3:565493-565512 Msa0623360:intron 35.0%
TCCCTCTATATTCCAATAAG+AGG + chr4_3:565750-565769 Msa0623360:intron 35.0%
CACCTCTTATTGGAATATAG+AGG - chr4_3:565755-565774 None:intergenic 35.0%
GATGACCATCTAACAATAGT+CGG - chr4_3:566128-566147 None:intergenic 35.0%
! ATTTTATGAAGGGAATGGCT+TGG + chr4_3:566216-566235 Msa0623360:CDS 35.0%
TCAGTAAACACATAGTAACC+AGG - chr4_3:566302-566321 None:intergenic 35.0%
GGTTACTATGTGTTTACTGA+AGG + chr4_3:566302-566321 Msa0623360:intron 35.0%
GACTCTTCAATTAGAGCAAA+CGG + chr4_3:566336-566355 Msa0623360:CDS 35.0%
CTAGCAAGTGTATAGACATA+TGG - chr4_3:566502-566521 None:intergenic 35.0%
GATCTCATTGTCTATACTCT+TGG - chr4_3:566575-566594 None:intergenic 35.0%
CATAGGCTTGAGCTGAAATA+AGG - chr4_3:564488-564507 None:intergenic 40.0%
AGAGGGATATACCTGTTTGA+GGG - chr4_3:564515-564534 None:intergenic 40.0%
AAGAGGGATATACCTGTTTG+AGG - chr4_3:564516-564535 None:intergenic 40.0%
GTTGTGTTGAAGTTGAGTCT+TGG - chr4_3:564705-564724 None:intergenic 40.0%
CAAGGACTTCCATAAGGTTT+AGG - chr4_3:564787-564806 None:intergenic 40.0%
AGCATGCATGCTTAATTACC+AGG - chr4_3:564867-564886 None:intergenic 40.0%
ATATCTCCTGAACAAGGTGA+TGG - chr4_3:565048-565067 None:intergenic 40.0%
TCACCTTGTTCAGGAGATAT+AGG + chr4_3:565048-565067 Msa0623360:CDS 40.0%
AATTATGATGCTAGAGGCAG+TGG - chr4_3:565116-565135 None:intergenic 40.0%
CGTACAACGTGTATATCAAC+TGG - chr4_3:565206-565225 None:intergenic 40.0%
GTTTACATTGACCGTGAATG+TGG - chr4_3:565507-565526 None:intergenic 40.0%
! CCAACTAGCAAAAGGTGTAA+AGG - chr4_3:565725-565744 None:intergenic 40.0%
! CCTTTACACCTTTTGCTAGT+TGG + chr4_3:565722-565741 Msa0623360:intron 40.0%
GGAAAGAACCAACTAGCAAA+AGG - chr4_3:565733-565752 None:intergenic 40.0%
GGGTGAATGCATATGAACTT+GGG + chr4_3:565812-565831 Msa0623360:CDS 40.0%
GAAAGAGCTTACTGACATGA+AGG + chr4_3:565855-565874 Msa0623360:CDS 40.0%
AAGCAATGCAAAGTTACGGT+GGG + chr4_3:565896-565915 Msa0623360:CDS 40.0%
AGATTGATGAGTGCATTCTG+TGG + chr4_3:566063-566082 Msa0623360:intron 40.0%
ACCATCTAACAATAGTCGGT+GGG - chr4_3:566124-566143 None:intergenic 40.0%
TGGGTGAATTGTTCTTTACC+TGG + chr4_3:566281-566300 Msa0623360:intron 40.0%
TGCTGAAGACTAATCGCATT+CGG - chr4_3:566402-566421 None:intergenic 40.0%
AAACTTGAATTCGCTGTTGC+AGG + chr4_3:566532-566551 Msa0623360:intron 40.0%
! CTGCATGGATTGTTGAGAAA+AGG - chr4_3:566610-566629 None:intergenic 40.0%
CATAGGCTTGAGCTGAAATA+AGG - chr4_3:564488-564507 None:intergenic 40.0%
AGAGGGATATACCTGTTTGA+GGG - chr4_3:564515-564534 None:intergenic 40.0%
AAGAGGGATATACCTGTTTG+AGG - chr4_3:564516-564535 None:intergenic 40.0%
GTTGTGTTGAAGTTGAGTCT+TGG - chr4_3:564705-564724 None:intergenic 40.0%
CAAGGACTTCCATAAGGTTT+AGG - chr4_3:564787-564806 None:intergenic 40.0%
AGCATGCATGCTTAATTACC+AGG - chr4_3:564867-564886 None:intergenic 40.0%
ATATCTCCTGAACAAGGTGA+TGG - chr4_3:565048-565067 None:intergenic 40.0%
TCACCTTGTTCAGGAGATAT+AGG + chr4_3:565048-565067 Msa0623360:CDS 40.0%
AATTATGATGCTAGAGGCAG+TGG - chr4_3:565116-565135 None:intergenic 40.0%
CGTACAACGTGTATATCAAC+TGG - chr4_3:565206-565225 None:intergenic 40.0%
GTTTACATTGACCGTGAATG+TGG - chr4_3:565507-565526 None:intergenic 40.0%
! CCAACTAGCAAAAGGTGTAA+AGG - chr4_3:565725-565744 None:intergenic 40.0%
! CCTTTACACCTTTTGCTAGT+TGG + chr4_3:565722-565741 Msa0623360:intron 40.0%
GGAAAGAACCAACTAGCAAA+AGG - chr4_3:565733-565752 None:intergenic 40.0%
GGGTGAATGCATATGAACTT+GGG + chr4_3:565812-565831 Msa0623360:CDS 40.0%
GAAAGAGCTTACTGACATGA+AGG + chr4_3:565855-565874 Msa0623360:CDS 40.0%
AAGCAATGCAAAGTTACGGT+GGG + chr4_3:565896-565915 Msa0623360:CDS 40.0%
AGATTGATGAGTGCATTCTG+TGG + chr4_3:566063-566082 Msa0623360:intron 40.0%
ACCATCTAACAATAGTCGGT+GGG - chr4_3:566124-566143 None:intergenic 40.0%
TGGGTGAATTGTTCTTTACC+TGG + chr4_3:566281-566300 Msa0623360:intron 40.0%
TGCTGAAGACTAATCGCATT+CGG - chr4_3:566402-566421 None:intergenic 40.0%
AAACTTGAATTCGCTGTTGC+AGG + chr4_3:566532-566551 Msa0623360:intron 40.0%
! CTGCATGGATTGTTGAGAAA+AGG - chr4_3:566610-566629 None:intergenic 40.0%
ACCTGTTTGAGGGTAAGCAT+AGG - chr4_3:564505-564524 None:intergenic 45.0%
TGAAAAGCGACACAAATGCC+TGG + chr4_3:564846-564865 Msa0623360:CDS 45.0%
TGGCTATGTTGCGTGAAGAA+CGG - chr4_3:565028-565047 None:intergenic 45.0%
ACATAGCCATCACCTTGTTC+AGG + chr4_3:565039-565058 Msa0623360:CDS 45.0%
AGGAATTTCACTGATCGTGG+TGG + chr4_3:565068-565087 Msa0623360:CDS 45.0%
AATTTCACTGATCGTGGTGG+AGG + chr4_3:565071-565090 Msa0623360:CDS 45.0%
CAACAAGATCACAGTGTCGT+TGG - chr4_3:565436-565455 None:intergenic 45.0%
! ACGCGCACAAGGATTTTATG+TGG - chr4_3:565574-565593 None:intergenic 45.0%
TTTCAGGAGTTCATCACTGC+TGG + chr4_3:565790-565809 Msa0623360:intron 45.0%
TTCAGGAGTTCATCACTGCT+GGG + chr4_3:565791-565810 Msa0623360:intron 45.0%
GGGGTGAATGCATATGAACT+TGG + chr4_3:565811-565830 Msa0623360:CDS 45.0%
CTTACTGACATGAAGGACTC+TGG + chr4_3:565862-565881 Msa0623360:CDS 45.0%
GAAGCAATGCAAAGTTACGG+TGG + chr4_3:565895-565914 Msa0623360:CDS 45.0%
CATCTAACAATAGTCGGTGG+GGG - chr4_3:566122-566141 None:intergenic 45.0%
CCATCTAACAATAGTCGGTG+GGG - chr4_3:566123-566142 None:intergenic 45.0%
GACCATCTAACAATAGTCGG+TGG - chr4_3:566125-566144 None:intergenic 45.0%
AGTCTCACTTCATCTGACAC+AGG - chr4_3:566158-566177 None:intergenic 45.0%
CAGATGAAGTGAGACTTCAG+TGG + chr4_3:566162-566181 Msa0623360:CDS 45.0%
GAAGTGAGACTTCAGTGGAA+AGG + chr4_3:566167-566186 Msa0623360:CDS 45.0%
ATTAGAGCAAACGGCAGTGA+TGG + chr4_3:566345-566364 Msa0623360:CDS 45.0%
TTAGAGCAAACGGCAGTGAT+GGG + chr4_3:566346-566365 Msa0623360:CDS 45.0%
ATTCGGCTAGCAACAACTGA+CGG - chr4_3:566385-566404 None:intergenic 45.0%
!! ATTAGTCTTCAGCACCCTTG+AGG + chr4_3:566408-566427 Msa0623360:CDS 45.0%
ATGTGAAACACAGCTCTGCA+TGG - chr4_3:566625-566644 None:intergenic 45.0%
TGCAGAGCTGTGTTTCACAT+TGG + chr4_3:566625-566644 Msa0623360:three_prime_UTR 45.0%
! TGTTTCACATTGGCTGGCTA+GGG + chr4_3:566635-566654 Msa0623360:three_prime_UTR 45.0%
ACCTGTTTGAGGGTAAGCAT+AGG - chr4_3:564505-564524 None:intergenic 45.0%
TGAAAAGCGACACAAATGCC+TGG + chr4_3:564846-564865 Msa0623360:CDS 45.0%
TGGCTATGTTGCGTGAAGAA+CGG - chr4_3:565028-565047 None:intergenic 45.0%
ACATAGCCATCACCTTGTTC+AGG + chr4_3:565039-565058 Msa0623360:CDS 45.0%
AGGAATTTCACTGATCGTGG+TGG + chr4_3:565068-565087 Msa0623360:CDS 45.0%
AATTTCACTGATCGTGGTGG+AGG + chr4_3:565071-565090 Msa0623360:CDS 45.0%
CAACAAGATCACAGTGTCGT+TGG - chr4_3:565436-565455 None:intergenic 45.0%
! ACGCGCACAAGGATTTTATG+TGG - chr4_3:565574-565593 None:intergenic 45.0%
TTTCAGGAGTTCATCACTGC+TGG + chr4_3:565790-565809 Msa0623360:intron 45.0%
TTCAGGAGTTCATCACTGCT+GGG + chr4_3:565791-565810 Msa0623360:intron 45.0%
GGGGTGAATGCATATGAACT+TGG + chr4_3:565811-565830 Msa0623360:CDS 45.0%
CTTACTGACATGAAGGACTC+TGG + chr4_3:565862-565881 Msa0623360:CDS 45.0%
GAAGCAATGCAAAGTTACGG+TGG + chr4_3:565895-565914 Msa0623360:CDS 45.0%
CATCTAACAATAGTCGGTGG+GGG - chr4_3:566122-566141 None:intergenic 45.0%
CCATCTAACAATAGTCGGTG+GGG - chr4_3:566123-566142 None:intergenic 45.0%
GACCATCTAACAATAGTCGG+TGG - chr4_3:566125-566144 None:intergenic 45.0%
AGTCTCACTTCATCTGACAC+AGG - chr4_3:566158-566177 None:intergenic 45.0%
CAGATGAAGTGAGACTTCAG+TGG + chr4_3:566162-566181 Msa0623360:CDS 45.0%
GAAGTGAGACTTCAGTGGAA+AGG + chr4_3:566167-566186 Msa0623360:CDS 45.0%
ATTAGAGCAAACGGCAGTGA+TGG + chr4_3:566345-566364 Msa0623360:CDS 45.0%
TTAGAGCAAACGGCAGTGAT+GGG + chr4_3:566346-566365 Msa0623360:CDS 45.0%
ATTCGGCTAGCAACAACTGA+CGG - chr4_3:566385-566404 None:intergenic 45.0%
!! ATTAGTCTTCAGCACCCTTG+AGG + chr4_3:566408-566427 Msa0623360:CDS 45.0%
ATGTGAAACACAGCTCTGCA+TGG - chr4_3:566625-566644 None:intergenic 45.0%
TGCAGAGCTGTGTTTCACAT+TGG + chr4_3:566625-566644 Msa0623360:three_prime_UTR 45.0%
! TGTTTCACATTGGCTGGCTA+GGG + chr4_3:566635-566654 Msa0623360:three_prime_UTR 45.0%
!!! TTTATTTTTATGAAAAAAAT+AGG - chr4_3:566728-566747 None:intergenic 5.0%
!!! TTTATTTTTATGAAAAAAAT+AGG - chr4_3:566728-566747 None:intergenic 5.0%
GCCTATGCTTACCCTCAAAC+AGG + chr4_3:564501-564520 Msa0623360:five_prime_UTR 50.0%
ACAGAAGAAGAACGCGCACA+AGG - chr4_3:565585-565604 None:intergenic 50.0%
TCAGGAGTTCATCACTGCTG+GGG + chr4_3:565792-565811 Msa0623360:intron 50.0%
! TGAACTTGGGTGCACTGATG+AGG + chr4_3:565825-565844 Msa0623360:CDS 50.0%
! GAACTTGGGTGCACTGATGA+GGG + chr4_3:565826-565845 Msa0623360:CDS 50.0%
! GGTGCACTGATGAGGGATTA+AGG + chr4_3:565833-565852 Msa0623360:CDS 50.0%
! CCCCACCGACTATTGTTAGA+TGG + chr4_3:566120-566139 Msa0623360:CDS 50.0%
GTCTATACTCTTGGCCACTG+TGG - chr4_3:566566-566585 None:intergenic 50.0%
GAGCTGTGTTTCACATTGGC+TGG + chr4_3:566629-566648 Msa0623360:three_prime_UTR 50.0%
! GTGTTTCACATTGGCTGGCT+AGG + chr4_3:566634-566653 Msa0623360:three_prime_UTR 50.0%
GCCTATGCTTACCCTCAAAC+AGG + chr4_3:564501-564520 Msa0623360:five_prime_UTR 50.0%
ACAGAAGAAGAACGCGCACA+AGG - chr4_3:565585-565604 None:intergenic 50.0%
TCAGGAGTTCATCACTGCTG+GGG + chr4_3:565792-565811 Msa0623360:intron 50.0%
! TGAACTTGGGTGCACTGATG+AGG + chr4_3:565825-565844 Msa0623360:CDS 50.0%
! GAACTTGGGTGCACTGATGA+GGG + chr4_3:565826-565845 Msa0623360:CDS 50.0%
! GGTGCACTGATGAGGGATTA+AGG + chr4_3:565833-565852 Msa0623360:CDS 50.0%
! CCCCACCGACTATTGTTAGA+TGG + chr4_3:566120-566139 Msa0623360:CDS 50.0%
GTCTATACTCTTGGCCACTG+TGG - chr4_3:566566-566585 None:intergenic 50.0%
GAGCTGTGTTTCACATTGGC+TGG + chr4_3:566629-566648 Msa0623360:three_prime_UTR 50.0%
! GTGTTTCACATTGGCTGGCT+AGG + chr4_3:566634-566653 Msa0623360:three_prime_UTR 50.0%
TGCAGGTAGTGAGTCCACAG+TGG + chr4_3:566549-566568 Msa0623360:intron 55.0%
TGCAGGTAGTGAGTCCACAG+TGG + chr4_3:566549-566568 Msa0623360:intron 55.0%
! CGGTGGGGGTGTACACAAGA+TGG - chr4_3:566108-566127 None:intergenic 60.0%
! CGGTGGGGGTGTACACAAGA+TGG - chr4_3:566108-566127 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 564442 566848 564442 ID=Msa0623360;Name=Msa0623360
chr4_3 mRNA 564442 566848 564442 ID=Msa0623360-mRNA-1;Parent=Msa0623360;Name=Msa0623360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=113|1|1|1|0.83|0.71|7|265|267
chr4_3 exon 564442 564522 564442 ID=Msa0623360-mRNA-1:exon:150;Parent=Msa0623360-mRNA-1
chr4_3 exon 564623 564867 564623 ID=Msa0623360-mRNA-1:exon:151;Parent=Msa0623360-mRNA-1
chr4_3 exon 564984 565106 564984 ID=Msa0623360-mRNA-1:exon:152;Parent=Msa0623360-mRNA-1
chr4_3 exon 565796 565954 565796 ID=Msa0623360-mRNA-1:exon:153;Parent=Msa0623360-mRNA-1
chr4_3 exon 566065 566237 566065 ID=Msa0623360-mRNA-1:exon:154;Parent=Msa0623360-mRNA-1
chr4_3 exon 566324 566429 566324 ID=Msa0623360-mRNA-1:exon:155;Parent=Msa0623360-mRNA-1
chr4_3 exon 566554 566848 566554 ID=Msa0623360-mRNA-1:exon:156;Parent=Msa0623360-mRNA-1
chr4_3 five_prime_UTR 564442 564522 564442 ID=Msa0623360-mRNA-1:five_prime_utr;Parent=Msa0623360-mRNA-1
chr4_3 five_prime_UTR 564623 564654 564623 ID=Msa0623360-mRNA-1:five_prime_utr;Parent=Msa0623360-mRNA-1
chr4_3 CDS 564655 564867 564655 ID=Msa0623360-mRNA-1:cds;Parent=Msa0623360-mRNA-1
chr4_3 CDS 564984 565106 564984 ID=Msa0623360-mRNA-1:cds;Parent=Msa0623360-mRNA-1
chr4_3 CDS 565796 565954 565796 ID=Msa0623360-mRNA-1:cds;Parent=Msa0623360-mRNA-1
chr4_3 CDS 566065 566237 566065 ID=Msa0623360-mRNA-1:cds;Parent=Msa0623360-mRNA-1
chr4_3 CDS 566324 566429 566324 ID=Msa0623360-mRNA-1:cds;Parent=Msa0623360-mRNA-1
chr4_3 CDS 566554 566583 566554 ID=Msa0623360-mRNA-1:cds;Parent=Msa0623360-mRNA-1
chr4_3 three_prime_UTR 566584 566848 566584 ID=Msa0623360-mRNA-1:three_prime_utr;Parent=Msa0623360-mRNA-1
Gene Sequence

>Msa0623360

ATGTTAACGGTTTATGCTCCAAGAGCTATTCTAAACTTCCATTTATACCAAGACTCAACTTCAACACAACAAACATATTATTCATACAAGATCAATAATGTTAATTTCATAAATTTCAATTCTACTTTTCCTAAACCTTATGGAAGTCCTTGTAGTAACATATTTCTTAGTTCATCCTTCTCTTGGAATTGTGAAAAGCGACACAAATGCCTGCAGTGTGGATCACATGACTCAATGTCATCTAATGATGAGTACCGTTCTTCACGCAACATAGCCATCACCTTGTTCAGGAGATATAGGAATTTCACTGATCGTGGTGGAGGTGACAATCTAAAAGAGTTCATCACTGCTGGGGTGAATGCATATGAACTTGGGTGCACTGATGAGGGATTAAGGAAAGAGCTTACTGACATGAAGGACTCTGGCTTTGAAATTGAAGCAATGCAAAGTTACGGTGGGAGCACAAGCTTGAAATCTAAAATCATATCTAATGAGATTGATGAGTGCATTCTGTGGTTAAGCATTATATTCATCACCATCTTGTGTACACCCCCACCGACTATTGTTAGATGGTCATCAACAACTCCTGTGTCAGATGAAGTGAGACTTCAGTGGAAAGGATTTTGTGCTCTCATAGCAAATGCATATTTTATGAAGGGAATGGCTTGGCTTCCTGTAAAGACTCTTCAATTAGAGCAAACGGCAGTGATGGGTGAAGCTGAGACACCGTCAGTTGTTGCTAGCCGAATGCGATTAGTCTTCAGCACCCTTGAGGTAGTGAGTCCACAGTGGCCAAGAGTATAG

Protein sequence

>Msa0623360

MLTVYAPRAILNFHLYQDSTSTQQTYYSYKINNVNFINFNSTFPKPYGSPCSNIFLSSSFSWNCEKRHKCLQCGSHDSMSSNDEYRSSRNIAITLFRRYRNFTDRGGGDNLKEFITAGVNAYELGCTDEGLRKELTDMKDSGFEIEAMQSYGGSTSLKSKIISNEIDECILWLSIIFITILCTPPPTIVRWSSTTPVSDEVRLQWKGFCALIANAYFMKGMAWLPVKTLQLEQTAVMGEAETPSVVASRMRLVFSTLEVVSPQWPRV*