AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0258280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258280 MtrunA17_Chr2g0320641 86.128 483 28 3 1 483 1 444 0.0 810
Msa0258280 MtrunA17_Chr8g0380621 22.951 366 242 8 138 483 75 420 1.31e-18 87.8
Msa0258280 MtrunA17_Chr8g0384941 26.440 382 231 11 129 472 43 412 1.55e-15 78.6
Msa0258280 MtrunA17_Chr1g0187901 25.613 367 234 9 129 474 33 381 7.76e-15 76.3
Msa0258280 MtrunA17_Chr1g0165861 25.389 193 124 5 290 470 7 191 3.17e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258280 AT5G22830.1 71.159 371 73 3 113 483 123 459 1.28e-172 493
Msa0258280 AT5G22830.2 71.159 371 73 3 113 483 123 459 1.28e-172 493
Msa0258280 AT5G09690.2 24.031 387 236 8 123 483 41 395 4.90e-20 92.4
Msa0258280 AT5G09690.1 24.031 387 236 8 123 483 30 384 5.96e-20 92.0
Msa0258280 AT5G09690.12 23.656 372 223 6 123 471 41 374 3.13e-18 87.0
Msa0258280 AT5G64560.1 25.538 372 231 10 136 482 41 391 1.39e-16 82.0
Msa0258280 AT1G80900.2 24.020 408 243 8 123 483 54 441 1.90e-15 79.0
Msa0258280 AT1G80900.1 24.020 408 243 8 123 483 54 441 1.90e-15 79.0
Msa0258280 AT1G16010.3 24.755 408 237 12 123 482 54 439 1.57e-14 75.9
Msa0258280 AT1G16010.1 24.755 408 237 12 123 482 54 439 1.57e-14 75.9
Msa0258280 AT1G16010.2 24.755 408 237 12 123 482 54 439 1.57e-14 75.9
Msa0258280 AT4G28580.1 20.161 372 238 10 137 483 70 407 4.41e-12 68.2

Find 163 sgRNAs with CRISPR-Local

Find 467 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTATAGCTGTCAGTTTA+AGG 0.106735 2_2:+54523289 Msa0258280:CDS
TTCATGATTTCAGGCATATT+TGG 0.179020 2_2:+54524434 Msa0258280:intron
GCAGATGCTGCTTGATCTTC+TGG 0.217701 2_2:+54522527 Msa0258280:CDS
AATACGGAGGATATGTATTA+TGG 0.232489 2_2:+54522563 Msa0258280:CDS
ACCACATCTGGGATTATTAT+TGG 0.241757 2_2:+54524614 Msa0258280:CDS
ATTTAATGCAGTTTGCATTT+TGG 0.259440 2_2:+54524588 Msa0258280:intron
ATGAATAATTTATCCGGATT+TGG 0.261474 2_2:-54518397 None:intergenic
TTCACTTTAGTTGATAATAT+TGG 0.271055 2_2:+54525508 Msa0258280:three_prime_UTR
GGCCCTCCATTGTTGCTCTT+GGG 0.287052 2_2:-54520404 None:intergenic
GCCTTACCAAATCGGATAAC+TGG 0.292260 2_2:+54522346 Msa0258280:CDS
TGGCCCTCCATTGTTGCTCT+TGG 0.305119 2_2:-54520405 None:intergenic
TACTTATATTTGATTATAAT+CGG 0.307648 2_2:+54520220 Msa0258280:CDS
GCACTGAGCATTCCACATTA+TGG 0.309684 2_2:-54522614 None:intergenic
AGGATTGCAACCACCTCTTC+TGG 0.321443 2_2:+54518827 Msa0258280:CDS
TACCAACCTTGTTCCGTTCC+CGG 0.326223 2_2:+54518453 Msa0258280:five_prime_UTR
TCAATCTACGGAAATGGATT+TGG 0.328492 2_2:+54525206 Msa0258280:three_prime_UTR
AAATTCAATGCCTTCTTTGC+TGG 0.336908 2_2:+54519796 Msa0258280:CDS
CTTAGAACCTCGTGTGAGTA+TGG 0.342447 2_2:+54521602 Msa0258280:CDS
CATATCCTCCGTATTTCATC+TGG 0.346335 2_2:-54522555 None:intergenic
GGAGGAAATTGAGATGCTTC+TGG 0.351803 2_2:+54522770 Msa0258280:CDS
TCGATTTCAAATGGCATTGA+TGG 0.352449 2_2:-54520425 None:intergenic
CCAAATTGCTAGGTTGAGTT+AGG 0.366760 2_2:+54522483 Msa0258280:intron
TCTTGATTCTGCAAGGGAAA+TGG 0.368944 2_2:+54523263 Msa0258280:CDS
ATATCCCCAGTTATCCGATT+TGG 0.369292 2_2:-54522352 None:intergenic
GGAATCAGACGCGACGGTTT+CGG 0.372599 2_2:-54518738 None:intergenic
ACTGCTTCACAGGTTCATAA+TGG 0.379206 2_2:+54525325 Msa0258280:intron
TCGGATAACTGGGGATATAC+TGG 0.379701 2_2:+54522357 Msa0258280:CDS
CGCTAGGTTGTTGCTTGTGT+GGG 0.382031 2_2:+54525382 Msa0258280:three_prime_UTR
AGAAATTGTACAATAAATAA+AGG 0.382181 2_2:+54522588 Msa0258280:CDS
CAAAGATCAATCTACGGAAA+TGG 0.393215 2_2:+54525200 Msa0258280:three_prime_UTR
GCTTTCAAGAATACAACGTT+TGG 0.393821 2_2:+54521563 Msa0258280:CDS
ACCATAATAAAACAGGTATC+TGG 0.398082 2_2:+54525640 Msa0258280:three_prime_UTR
ATCTGGCTCCATTAATTGTT+GGG 0.403216 2_2:+54525657 Msa0258280:three_prime_UTR
CCTAGCGAAGAGTCTCTTGA+TGG 0.410988 2_2:-54525366 None:intergenic
TCAGACGAAACTTCAAATAT+AGG 0.411397 2_2:+54524695 Msa0258280:three_prime_UTR
GCCCTCCATTGTTGCTCTTG+GGG 0.412124 2_2:-54520403 None:intergenic
TTTAATTTCTTCGTAAGGAT+TGG 0.415238 2_2:-54525601 None:intergenic
TTCTTGAGGCCTTACCAAAT+CGG 0.421971 2_2:+54522338 Msa0258280:CDS
ATAGAACGAACTTCATAAAC+AGG 0.428110 2_2:-54518878 None:intergenic
CACGGAGGCTTGAAGTTAGC+AGG 0.431686 2_2:+54523792 Msa0258280:CDS
GTTCCTCAAGATAGGACTTC+AGG 0.433942 2_2:-54524463 None:intergenic
AGTGGCGACGGTGGAGGTTA+CGG 0.436072 2_2:-54518488 None:intergenic
ATCCATGCACTGCGTGACTC+TGG 0.443866 2_2:-54525574 None:intergenic
TCGTATTAGCAAACAAACTT+TGG 0.451649 2_2:+54522387 Msa0258280:CDS
AAATGCATGAATAATTTATC+CGG 0.456117 2_2:-54518403 None:intergenic
GTATGCTATACTTCTAAACT+TGG 0.456498 2_2:+54520164 Msa0258280:CDS
TATCTGGCTCCATTAATTGT+TGG 0.458068 2_2:+54525656 Msa0258280:three_prime_UTR
GTGCACAATCACTGCATTTG+TGG 0.458974 2_2:-54525178 None:intergenic
CAACAGACCTCGATTTCAAA+TGG 0.463876 2_2:-54520434 None:intergenic
TTATTCAGGTCTTCGTCCAC+GGG 0.464836 2_2:+54519739 Msa0258280:intron
CAGGGTGGAACTGCTTCTCC+AGG 0.465720 2_2:+54523811 Msa0258280:CDS
TTCTAGAGTCATTGCTGCCT+CGG 0.468702 2_2:+54520375 Msa0258280:CDS
TGCACAATCACTGCATTTGT+GGG 0.470159 2_2:-54525177 None:intergenic
CTCAGTGCCTTTAGACAAGC+AGG 0.471829 2_2:+54522629 Msa0258280:CDS
ATACGGAGGATATGTATTAT+GGG 0.472338 2_2:+54522564 Msa0258280:CDS
TCTTGTGAAAGTTTGAATGA+TGG 0.472966 2_2:+54525695 Msa0258280:three_prime_UTR
AATTATTTAATTTCTTCGTA+AGG 0.478443 2_2:-54525606 None:intergenic
AGATATTATACCAGCAAAGA+AGG 0.478493 2_2:-54519806 None:intergenic
CAAAATATGTACCTGCTACA+AGG 0.478564 2_2:-54523862 None:intergenic
GCAGTTGGTGCCCTTGTAGC+AGG 0.482970 2_2:+54523851 Msa0258280:CDS
CATTTCACCGGCTTGAGCGC+CGG 0.483931 2_2:-54518674 None:intergenic
GATTTACACCATAATAAAAC+AGG 0.490449 2_2:+54525633 Msa0258280:three_prime_UTR
CCCAGTTATCCGATTTGGTA+AGG 0.493190 2_2:-54522347 None:intergenic
GCTCAAGGGCAGGAGCTCTC+AGG 0.495202 2_2:+54522505 Msa0258280:CDS
TTCATCATCAACAGCTTCAT+CGG 0.505527 2_2:-54518759 None:intergenic
ATTATTCAGGTCTTCGTCCA+CGG 0.515753 2_2:+54519738 Msa0258280:intron
TCGGTTTCAGCGTCGTTCCA+CGG 0.517395 2_2:-54518719 None:intergenic
TGCATGCCGGGAACGGAACA+AGG 0.518041 2_2:-54518459 None:intergenic
GTTGTAGAAGTGAAATCAGA+TGG 0.519105 2_2:+54519114 Msa0258280:CDS
TCGCTAGGTTGTTGCTTGTG+TGG 0.519298 2_2:+54525381 Msa0258280:three_prime_UTR
CCTTACCAAATCGGATAACT+GGG 0.519888 2_2:+54522347 Msa0258280:CDS
ACTTCTGAATTTAACTAACA+TGG 0.520719 2_2:+54518508 Msa0258280:exon
AGAGGTAGTTGGTGCGTGTG+AGG 0.522210 2_2:-54518571 None:intergenic
TCAGCAACCTGCTTGTCTAA+AGG 0.527323 2_2:-54522636 None:intergenic
GAAGAGGTGGTTGCAATCCT+CGG 0.527378 2_2:-54518824 None:intergenic
TTCTGGAAAATTATCTCCAA+AGG 0.529417 2_2:+54522787 Msa0258280:CDS
TGGAGGACCCAGATGAAATA+CGG 0.529419 2_2:+54522547 Msa0258280:CDS
ATCATCGCCGGCGCTCAAGC+CGG 0.529485 2_2:+54518667 Msa0258280:CDS
CACCACACGTTCCTCAAGAT+AGG 0.530197 2_2:-54524471 None:intergenic
GTCCAGAGTCACGCAGTGCA+TGG 0.530398 2_2:+54525572 Msa0258280:three_prime_UTR
GGAACATTCTGTGTGGCAGT+TGG 0.533059 2_2:+54523836 Msa0258280:CDS
CTCATGATATGTAGAGGAGG+AGG 0.534424 2_2:+54522749 Msa0258280:intron
AACGGAACAAGGTTGGTAGT+TGG 0.534970 2_2:-54518448 None:intergenic
GTGGATCTACTGCATTTCAC+CGG 0.543097 2_2:-54518686 None:intergenic
TTCAGAAGTGGCGACGGTGG+AGG 0.543793 2_2:-54518494 None:intergenic
GTGAGAGATTCGTGGAATTG+TGG 0.544397 2_2:-54518614 None:intergenic
AAAATATGTACCTGCTACAA+GGG 0.544963 2_2:-54523861 None:intergenic
AATCTCTCACTCTTCTTCGC+CGG 0.546307 2_2:+54518627 Msa0258280:CDS
AAAGGCTTCTTGATTCTGCA+AGG 0.546966 2_2:+54523256 Msa0258280:CDS
CGGTGAGGTCGGAGAAGAAG+AGG 0.549065 2_2:-54518589 None:intergenic
ATGATATGTAGAGGAGGAGG+AGG 0.550490 2_2:+54522752 Msa0258280:intron
CTTGTCACGGTCAAGCTGAA+AGG 0.554270 2_2:+54523238 Msa0258280:CDS
GTCGGAGAAGAAGAGGTAGT+TGG 0.555331 2_2:-54518582 None:intergenic
GTGGAACTGCTTCTCCAGGT+TGG 0.558353 2_2:+54523815 Msa0258280:CDS
TCTGGAGATTCTCTATCGCT+CGG 0.560572 2_2:+54518845 Msa0258280:CDS
TAGTTGGTGCGTGTGAGGAA+AGG 0.563526 2_2:-54518566 None:intergenic
TGGTGCGTGTGAGGAAAGGT+TGG 0.564908 2_2:-54518562 None:intergenic
GTTGAGTTAGGCTCAAGGGC+AGG 0.569703 2_2:+54522495 Msa0258280:CDS
TTTAGACAAGCAGGTTGCTG+AGG 0.573002 2_2:+54522638 Msa0258280:CDS
TATGCTATACTTCTAAACTT+GGG 0.574188 2_2:+54520165 Msa0258280:CDS
TTAAACCCCAAGAGCAACAA+TGG 0.574463 2_2:+54520398 Msa0258280:CDS
ATCAATGCCATTTGAAATCG+AGG 0.574990 2_2:+54520427 Msa0258280:CDS
ACCCCAAGAGCAACAATGGA+GGG 0.575827 2_2:+54520402 Msa0258280:CDS
ACATCTGGGATTATTATTGG+TGG 0.576146 2_2:+54524617 Msa0258280:CDS
CTAGGTTGAGTTAGGCTCAA+GGG 0.577286 2_2:+54522491 Msa0258280:intron
AGTGTAAAAGACGACGCAGA+AGG 0.580230 2_2:+54521153 Msa0258280:CDS
ATGTTAGTTAAATTCAGAAG+TGG 0.580810 2_2:-54518506 None:intergenic
AGATTCGTGGAATTGTGGTT+CGG 0.582093 2_2:-54518609 None:intergenic
GCTAGGTTGAGTTAGGCTCA+AGG 0.583177 2_2:+54522490 Msa0258280:intron
CAAGAATACAACGTTTGGAG+CGG 0.585508 2_2:+54521568 Msa0258280:CDS
ACGTTTGGAGCGGAGACTGA+TGG 0.587474 2_2:+54521578 Msa0258280:CDS
GAGCGCCGGCGATGATGTAA+CGG 0.587494 2_2:-54518660 None:intergenic
ACCAATAATAATCCCAGATG+TGG 0.587896 2_2:-54524615 None:intergenic
TGCCGGGAACGGAACAAGGT+TGG 0.588656 2_2:-54518455 None:intergenic
AACTTTCACAAGAACTCGGT+AGG 0.589539 2_2:-54525685 None:intergenic
GAATTGTGGTTCGGTGAGGT+CGG 0.590714 2_2:-54518600 None:intergenic
CCACACAGAATGTTCCAACC+TGG 0.592527 2_2:-54523829 None:intergenic
CCATCAAGAGACTCTTCGCT+AGG 0.592834 2_2:+54525366 Msa0258280:three_prime_UTR
CTAGGTTCAAGCTCTTCTTG+AGG 0.592984 2_2:+54522324 Msa0258280:intron
GATGGAGAAAGAATACAGAC+TGG 0.594103 2_2:+54525713 Msa0258280:three_prime_UTR
AAGGCTTCTTGATTCTGCAA+GGG 0.595349 2_2:+54523257 Msa0258280:CDS
GTTAAATTCAGAAGTGGCGA+CGG 0.598296 2_2:-54518500 None:intergenic
GACGCAGAAGGATCTAAAGA+TGG 0.601591 2_2:+54521165 Msa0258280:CDS
TGTGCACAAAGATCAATCTA+CGG 0.603651 2_2:+54525194 Msa0258280:three_prime_UTR
TTAGACAAGCAGGTTGCTGA+GGG 0.603811 2_2:+54522639 Msa0258280:CDS
TTCAAACTTTCACAAGAACT+CGG 0.604203 2_2:-54525689 None:intergenic
TGTATAACTACCTCAGAGCA+AGG 0.605896 2_2:+54524660 Msa0258280:CDS
GAAGAAGAGTGAGAGATTCG+TGG 0.609323 2_2:-54518622 None:intergenic
GAGTCACGCAGTGCATGGAT+CGG 0.611874 2_2:+54525577 Msa0258280:three_prime_UTR
AATCTCCGTTACATCATCGC+CGG 0.612622 2_2:+54518655 Msa0258280:CDS
AAATAAAGGAAACCATAATG+TGG 0.613910 2_2:+54522602 Msa0258280:CDS
AGACAATTATTGAAGTCTAG+TGG 0.615214 2_2:+54519165 Msa0258280:CDS
GATGCTGCTTGATCTTCTGG+AGG 0.616845 2_2:+54522530 Msa0258280:CDS
ATATCCTCCGTATTTCATCT+GGG 0.617091 2_2:-54522554 None:intergenic
GAACCTGAAGTCCTATCTTG+AGG 0.617632 2_2:+54524460 Msa0258280:CDS
GGTAACAATTCCATTGCAGA+AGG 0.618379 2_2:+54521186 Msa0258280:CDS
CGTGGAATTGTGGTTCGGTG+AGG 0.623398 2_2:-54518604 None:intergenic
TTGTAGAAGTGAAATCAGAT+GGG 0.624691 2_2:+54519115 Msa0258280:CDS
TCCACGGGACGTTAGAAGTG+TGG 0.625060 2_2:+54519754 Msa0258280:CDS
TTTACATAAGAACTGCATGA+AGG 0.625107 2_2:+54525463 Msa0258280:three_prime_UTR
TCCACACTTCTAACGTCCCG+TGG 0.632114 2_2:-54519755 None:intergenic
AAATTCAGAAGTGGCGACGG+TGG 0.632676 2_2:-54518497 None:intergenic
TTCATCGGAATCAGACGCGA+CGG 0.634341 2_2:-54518744 None:intergenic
GCTGTTGATGATGAATCAAA+CGG 0.636421 2_2:+54518767 Msa0258280:CDS
TGCAGATGTGAATCTTGTCA+CGG 0.638670 2_2:+54523225 Msa0258280:intron
AACCCCAAGAGCAACAATGG+AGG 0.639651 2_2:+54520401 Msa0258280:CDS
CGATAGAGAATCTCCAGAAG+AGG 0.640168 2_2:-54518840 None:intergenic
GGCGACGGTGGAGGTTACGG+TGG 0.641123 2_2:-54518485 None:intergenic
TAGAGAATCTCCAGAAGAGG+TGG 0.641979 2_2:-54518837 None:intergenic
ACGGAGGCTTGAAGTTAGCA+GGG 0.650280 2_2:+54523793 Msa0258280:CDS
CTTCTTCAATAGAGTCTCCG+AGG 0.650707 2_2:+54518807 Msa0258280:CDS
GGTGAAATGCAGTAGATCCA+CGG 0.652611 2_2:+54518688 Msa0258280:CDS
TTGCTCTTGGGGTTTAACCG+AGG 0.658451 2_2:-54520392 None:intergenic
GATCCACGGAAGAAAAGCCG+TGG 0.662772 2_2:+54518702 Msa0258280:CDS
CCAGGTTGGAACATTCTGTG+TGG 0.669557 2_2:+54523829 Msa0258280:CDS
GCAGAAGGCCAAGAAAAGTG+TGG 0.677081 2_2:+54521201 Msa0258280:CDS
TTAGAAGTATAGCATACTCA+CGG 0.677451 2_2:-54520158 None:intergenic
GTCCTATCTTGAGGAACGTG+TGG 0.678140 2_2:+54524469 Msa0258280:CDS
TTCCATTCAACAGCTCACGG+AGG 0.732721 2_2:+54523777 Msa0258280:intron
TGTGTTTCCATACTCACACG+AGG 0.733801 2_2:-54521609 None:intergenic
GAGGCTTGAAGTTAGCAGGG+TGG 0.735608 2_2:+54523796 Msa0258280:CDS
CTTACCAAATCGGATAACTG+GGG 0.745411 2_2:+54522348 Msa0258280:CDS
AGGACCCAGATGAAATACGG+AGG 0.746792 2_2:+54522550 Msa0258280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAATAATTTTATTTTGAT+TGG + chr2_2:54519560-54519579 Msa0258280:intron 10.0%
!! TACTTATATTTGATTATAAT+CGG + chr2_2:54520220-54520239 Msa0258280:CDS 10.0%
!!! AAAAAATGATTTTAAGATTA+TGG + chr2_2:54521916-54521935 Msa0258280:intron 10.0%
!! AATATTATACTATTATACTA+TGG - chr2_2:54523549-54523568 None:intergenic 10.0%
!! TGAATAATTTAAATTAAGTT+TGG - chr2_2:54523945-54523964 None:intergenic 10.0%
!!! TATTATTTGATGGATTTTAT+AGG - chr2_2:54518365-54518384 None:intergenic 15.0%
!! AATAATAAAAAAACCAAATC+CGG + chr2_2:54518384-54518403 Msa0258280:five_prime_UTR 15.0%
!! ACATTGTGATTATTATATTT+GGG - chr2_2:54519438-54519457 None:intergenic 15.0%
!! AACATTGTGATTATTATATT+TGG - chr2_2:54519439-54519458 None:intergenic 15.0%
!! AAATAACTCAAATTCAAAAT+AGG + chr2_2:54519503-54519522 Msa0258280:intron 15.0%
!! CTGAAATAATTCATATATTA+TGG + chr2_2:54520255-54520274 Msa0258280:intron 15.0%
!! ACAAAAGAAAAATTTGAAAA+TGG + chr2_2:54520628-54520647 Msa0258280:intron 15.0%
!! AATAAAAACTTATTTGAACA+CGG + chr2_2:54520880-54520899 Msa0258280:intron 15.0%
!!! TCATTCATAATTTTATTTTG+AGG + chr2_2:54520982-54521001 Msa0258280:intron 15.0%
!!! CATTCATAATTTTATTTTGA+GGG + chr2_2:54520983-54521002 Msa0258280:intron 15.0%
!!! TCAGTTTTTTTTTTTAAAGA+GGG - chr2_2:54521345-54521364 None:intergenic 15.0%
!!! TTCAGTTTTTTTTTTTAAAG+AGG - chr2_2:54521346-54521365 None:intergenic 15.0%
!!! TCTTTAAAAAAAAAAACTGA+AGG + chr2_2:54521345-54521364 Msa0258280:intron 15.0%
!!! ATTACATATTTTTATTAGCA+TGG + chr2_2:54521875-54521894 Msa0258280:intron 15.0%
!!! TTCAACTTTATTTTTTTACA+AGG + chr2_2:54522047-54522066 Msa0258280:intron 15.0%
!!! TACTCTAAAATATTTCAATA+AGG - chr2_2:54522195-54522214 None:intergenic 15.0%
!! AGAAATTGTACAATAAATAA+AGG + chr2_2:54522588-54522607 Msa0258280:CDS 15.0%
!! GTATAATATTATTACATTCA+AGG + chr2_2:54523559-54523578 Msa0258280:intron 15.0%
!! TTAAGTTTGGTTAAAATTAT+GGG - chr2_2:54523932-54523951 None:intergenic 15.0%
!! ATTAAGTTTGGTTAAAATTA+TGG - chr2_2:54523933-54523952 None:intergenic 15.0%
!!! GTTAATTATAAATTTGTTAG+TGG + chr2_2:54524036-54524055 Msa0258280:intron 15.0%
!! AATAAAAATACATTAAGAAG+AGG - chr2_2:54524760-54524779 None:intergenic 15.0%
!! ATCTATTCATCTTATTATTT+AGG - chr2_2:54524874-54524893 None:intergenic 15.0%
!!! AATTATTTAATTTCTTCGTA+AGG - chr2_2:54525609-54525628 None:intergenic 15.0%
!! AAATGCATGAATAATTTATC+CGG - chr2_2:54518406-54518425 None:intergenic 20.0%
!! ATGATATAAATATGTTAGCA+TGG - chr2_2:54519688-54519707 None:intergenic 20.0%
!! TATCATTTCTTAATACCTTA+TGG + chr2_2:54519838-54519857 Msa0258280:intron 20.0%
!!! TAGATTAATTTTTATGAGTG+TGG - chr2_2:54520042-54520061 None:intergenic 20.0%
!! TCAATAATTAGCGTATTAAA+TGG - chr2_2:54520472-54520491 None:intergenic 20.0%
!!! TTATGACAATATGTTGATTT+TGG + chr2_2:54520591-54520610 Msa0258280:intron 20.0%
!! TATACTTAAGTATGCATTTA+TGG + chr2_2:54521035-54521054 Msa0258280:intron 20.0%
!! CAAAAACTGGTAAAAATTTA+TGG + chr2_2:54521752-54521771 Msa0258280:intron 20.0%
!!! TTCTAATTTTCTTAAGATCT+TGG - chr2_2:54522078-54522097 None:intergenic 20.0%
!!! ATGAAAGATTACTTTTACTT+AGG - chr2_2:54522116-54522135 None:intergenic 20.0%
!!! TCTAAAATATTTCAATAAGG+AGG - chr2_2:54522192-54522211 None:intergenic 20.0%
!! TTAAACTCTTGCAATTAAAA+TGG + chr2_2:54523615-54523634 Msa0258280:intron 20.0%
!! CAAAGTTATTAGAACAAATA+AGG - chr2_2:54523756-54523775 None:intergenic 20.0%
!! CTTATTTGTTCTAATAACTT+TGG + chr2_2:54523754-54523773 Msa0258280:intron 20.0%
!! TTTGACAAATTATGTGAAAT+AGG + chr2_2:54523893-54523912 Msa0258280:intron 20.0%
!!! TTATAAATTTGTTAGTGGTT+TGG + chr2_2:54524041-54524060 Msa0258280:intron 20.0%
!!! AGAATATTTTGATATAGATC+AGG - chr2_2:54524414-54524433 None:intergenic 20.0%
!! AAATATTCTTTCATGATTTC+AGG + chr2_2:54524425-54524444 Msa0258280:intron 20.0%
!! TGTTAAATTAACCATATTTG+TGG + chr2_2:54524565-54524584 Msa0258280:intron 20.0%
!! ACTTAATCTATAAACAATTC+AGG + chr2_2:54524990-54525009 Msa0258280:intron 20.0%
!!! CAGGTTATTTTAAAATATGA+AGG + chr2_2:54525144-54525163 Msa0258280:intron 20.0%
!!! TTCACTTTAGTTGATAATAT+TGG + chr2_2:54525508-54525527 Msa0258280:three_prime_UTR 20.0%
!!! TATGATCAAGTGAATTTTTA+GGG + chr2_2:54525536-54525555 Msa0258280:three_prime_UTR 20.0%
! ATGAATAATTTATCCGGATT+TGG - chr2_2:54518400-54518419 None:intergenic 25.0%
! ATGTTAGTTAAATTCAGAAG+TGG - chr2_2:54518509-54518528 None:intergenic 25.0%
! ACTTCTGAATTTAACTAACA+TGG + chr2_2:54518508-54518527 Msa0258280:exon 25.0%
! ACTAGTATGAAATTATGTTG+TGG + chr2_2:54518921-54518940 Msa0258280:intron 25.0%
! GAAGATAAAACTAATTAAGC+AGG + chr2_2:54519002-54519021 Msa0258280:intron 25.0%
! ATAAAATAGAAGACTACATG+AGG - chr2_2:54519599-54519618 None:intergenic 25.0%
! GAATTTGTCAAAAACAATGA+TGG - chr2_2:54519782-54519801 None:intergenic 25.0%
! GTATTAAGAAATGATAGAGT+GGG - chr2_2:54519834-54519853 None:intergenic 25.0%
!! TTTTATTAGCAGCATAACAT+AGG - chr2_2:54520008-54520027 None:intergenic 25.0%
!! TAATTTTTATGAGTGTGGAT+TGG - chr2_2:54520037-54520056 None:intergenic 25.0%
! TATGCTATACTTCTAAACTT+GGG + chr2_2:54520165-54520184 Msa0258280:CDS 25.0%
!!! TATTGATTTTTCACCAGTAA+AGG + chr2_2:54520341-54520360 Msa0258280:intron 25.0%
! AATACGCTAATTATTGAATC+AGG + chr2_2:54520475-54520494 Msa0258280:intron 25.0%
! ATACGCTAATTATTGAATCA+GGG + chr2_2:54520476-54520495 Msa0258280:intron 25.0%
!! AAATTTTTCTTTTGTCAGAC+AGG - chr2_2:54520623-54520642 None:intergenic 25.0%
!! TTGAAAATGGTTTCTTTTCA+AGG + chr2_2:54520641-54520660 Msa0258280:intron 25.0%
!! TGAAAATGGTTTCTTTTCAA+GGG + chr2_2:54520642-54520661 Msa0258280:intron 25.0%
!! TTTTGTCTCATTAGAACAAA+TGG - chr2_2:54520728-54520747 None:intergenic 25.0%
!!! TAATTTTATTTTGAGGGATG+AGG + chr2_2:54520989-54521008 Msa0258280:intron 25.0%
! TTCCTATATACTTTCTCTAA+TGG - chr2_2:54521247-54521266 None:intergenic 25.0%
!! CCAAAAATCATAACCATTTT+GGG - chr2_2:54521270-54521289 None:intergenic 25.0%
!! CCAAAATGGTTATGATTTTT+GGG + chr2_2:54521268-54521287 Msa0258280:intron 25.0%
!! CAAAATGGTTATGATTTTTG+GGG + chr2_2:54521269-54521288 Msa0258280:intron 25.0%
!!! GAGTAGATTTTCAAGTAATT+GGG + chr2_2:54521291-54521310 Msa0258280:intron 25.0%
!!! AGTAGATTTTCAAGTAATTG+GGG + chr2_2:54521292-54521311 Msa0258280:intron 25.0%
!! TGTTCTCATTTTGTATGTTA+GGG + chr2_2:54521431-54521450 Msa0258280:intron 25.0%
! AAATTCAACCATGGTAATTA+GGG - chr2_2:54521522-54521541 None:intergenic 25.0%
! AAAATTCAACCATGGTAATT+AGG - chr2_2:54521523-54521542 None:intergenic 25.0%
! ATGTTTATGTTCATTCTTTG+TGG + chr2_2:54521646-54521665 Msa0258280:intron 25.0%
!!! GTGTTTTTTTTTTAGAGCTT+TGG + chr2_2:54521944-54521963 Msa0258280:intron 25.0%
!!! AAGATTACTTTTACTTAGGA+GGG - chr2_2:54522112-54522131 None:intergenic 25.0%
!!! AAAGATTACTTTTACTTAGG+AGG - chr2_2:54522113-54522132 None:intergenic 25.0%
! GAGAAAAGTTATTCAAATCA+GGG - chr2_2:54522286-54522305 None:intergenic 25.0%
! AGAGAAAAGTTATTCAAATC+AGG - chr2_2:54522287-54522306 None:intergenic 25.0%
!! TTTTTCTCATTAATCTTCAG+CGG + chr2_2:54522424-54522443 Msa0258280:intron 25.0%
! AAATAAAGGAAACCATAATG+TGG + chr2_2:54522602-54522621 Msa0258280:CDS 25.0%
!!! TTTTTTCTCATGATATGTAG+AGG + chr2_2:54522743-54522762 Msa0258280:intron 25.0%
! AAATTATTCACAATCTAGTC+TGG + chr2_2:54523955-54523974 Msa0258280:intron 25.0%
! GTTTAATATACTTTCCATGA+AGG + chr2_2:54524233-54524252 Msa0258280:intron 25.0%
!! GTGGAAAAAATATGAACTTT+TGG + chr2_2:54524307-54524326 Msa0258280:intron 25.0%
!! ATTTAATGCAGTTTGCATTT+TGG + chr2_2:54524588-54524607 Msa0258280:intron 25.0%
! AAAAATACATTAAGAAGAGG+AGG - chr2_2:54524757-54524776 None:intergenic 25.0%
!! ATTTAAAGTAAGCTTTCAAG+TGG + chr2_2:54524952-54524971 Msa0258280:intron 25.0%
!! GTATGATCAAGTGAATTTTT+AGG + chr2_2:54525535-54525554 Msa0258280:three_prime_UTR 25.0%
!! TTTAATTTCTTCGTAAGGAT+TGG - chr2_2:54525604-54525623 None:intergenic 25.0%
! GATTTACACCATAATAAAAC+AGG + chr2_2:54525633-54525652 Msa0258280:three_prime_UTR 25.0%
! TCTATTGAAGAAGTTTTGCT+CGG - chr2_2:54518800-54518819 None:intergenic 30.0%
ATAGAACGAACTTCATAAAC+AGG - chr2_2:54518881-54518900 None:intergenic 30.0%
GTTCAATGAACTAAAACCAT+AGG + chr2_2:54518974-54518993 Msa0258280:intron 30.0%
TGAACTAAAACCATAGGATT+AGG + chr2_2:54518980-54518999 Msa0258280:intron 30.0%
! GTTTTATCTTCCTAATCCTA+TGG - chr2_2:54518993-54519012 None:intergenic 30.0%
TCTAAATTTGTGAATCGTGA+AGG + chr2_2:54519092-54519111 Msa0258280:intron 30.0%
TTGTAGAAGTGAAATCAGAT+GGG + chr2_2:54519115-54519134 Msa0258280:CDS 30.0%
AGACAATTATTGAAGTCTAG+TGG + chr2_2:54519165-54519184 Msa0258280:CDS 30.0%
GAGCTTATGAAAAGAACATA+TGG - chr2_2:54519414-54519433 None:intergenic 30.0%
AGATATTATACCAGCAAAGA+AGG - chr2_2:54519809-54519828 None:intergenic 30.0%
GGTATTAAGAAATGATAGAG+TGG - chr2_2:54519835-54519854 None:intergenic 30.0%
CATTGCTTATAAGTACCATA+AGG - chr2_2:54519856-54519875 None:intergenic 30.0%
CTTATGGTACTTATAAGCAA+TGG + chr2_2:54519854-54519873 Msa0258280:intron 30.0%
! TTAGAAGTATAGCATACTCA+CGG - chr2_2:54520161-54520180 None:intergenic 30.0%
GTATGCTATACTTCTAAACT+TGG + chr2_2:54520164-54520183 Msa0258280:CDS 30.0%
!! TGTCGTTATTTCTGTGATAA+AGG + chr2_2:54520288-54520307 Msa0258280:intron 30.0%
!! GTCGTTATTTCTGTGATAAA+GGG + chr2_2:54520289-54520308 Msa0258280:intron 30.0%
!! TCGTTATTTCTGTGATAAAG+GGG + chr2_2:54520290-54520309 Msa0258280:intron 30.0%
TACTGGTGAAAAATCAATAG+AGG - chr2_2:54520340-54520359 None:intergenic 30.0%
TACGCTAATTATTGAATCAG+GGG + chr2_2:54520477-54520496 Msa0258280:intron 30.0%
GATATAGCAGAAAATGAGTT+AGG - chr2_2:54520570-54520589 None:intergenic 30.0%
!! TACTGCTATTAAGTTGATTC+AGG - chr2_2:54520693-54520712 None:intergenic 30.0%
GAAATATGATAGTTACACTC+AGG + chr2_2:54520919-54520938 Msa0258280:intron 30.0%
! TGCCATTAGAGAAAGTATAT+AGG + chr2_2:54521242-54521261 Msa0258280:intron 30.0%
AAGTATATAGGAACCCAAAA+TGG + chr2_2:54521254-54521273 Msa0258280:intron 30.0%
! CCCAAAATGGTTATGATTTT+TGG + chr2_2:54521267-54521286 Msa0258280:intron 30.0%
! CCCAAAAATCATAACCATTT+TGG - chr2_2:54521271-54521290 None:intergenic 30.0%
!!! GGAGTAGATTTTCAAGTAAT+TGG + chr2_2:54521290-54521309 Msa0258280:intron 30.0%
CTAACATTTATATGACCAGT+TGG + chr2_2:54521390-54521409 Msa0258280:intron 30.0%
! GTGTTCTCATTTTGTATGTT+AGG + chr2_2:54521430-54521449 Msa0258280:intron 30.0%
AATTCAACCATGGTAATTAG+GGG - chr2_2:54521521-54521540 None:intergenic 30.0%
! ATTACCATGGTTGAATTTTC+AGG + chr2_2:54521524-54521543 Msa0258280:intron 30.0%
AATTTGCCTATTTGTTCCTA+TGG + chr2_2:54521693-54521712 Msa0258280:intron 30.0%
! TTATAAATGCCATTTCACGA+TGG + chr2_2:54521849-54521868 Msa0258280:intron 30.0%
TGTAATAAACCATCGTGAAA+TGG - chr2_2:54521861-54521880 None:intergenic 30.0%
!!! CATAGAAGCTATTTTTCATG+TGG + chr2_2:54521967-54521986 Msa0258280:intron 30.0%
TTTCTATAGCATATGTCTAG+TGG + chr2_2:54522160-54522179 Msa0258280:intron 30.0%
TATAATCTGTTATGAACCGA+AGG - chr2_2:54522231-54522250 None:intergenic 30.0%
TCGTATTAGCAAACAAACTT+TGG + chr2_2:54522387-54522406 Msa0258280:CDS 30.0%
AATACGGAGGATATGTATTA+TGG + chr2_2:54522563-54522582 Msa0258280:CDS 30.0%
ATACGGAGGATATGTATTAT+GGG + chr2_2:54522564-54522583 Msa0258280:CDS 30.0%
! TTCTGGAAAATTATCTCCAA+AGG + chr2_2:54522787-54522806 Msa0258280:CDS 30.0%
! TTTGGAATGAGAATAACCTT+TGG - chr2_2:54522806-54522825 None:intergenic 30.0%
TGATACGTAATGCACAAATT+TGG - chr2_2:54522824-54522843 None:intergenic 30.0%
! TAATAGTCAAAGCACTAACA+TGG + chr2_2:54522958-54522977 Msa0258280:intron 30.0%
AAGTAAAGGCTTAAGATTCT+TGG - chr2_2:54523006-54523025 None:intergenic 30.0%
AGGATGTTAATGGTAAGTAA+AGG - chr2_2:54523020-54523039 None:intergenic 30.0%
ATTCTATAGCTGTCAGTTTA+AGG + chr2_2:54523289-54523308 Msa0258280:CDS 30.0%
AGAATTGTATCAAGTGATTG+TGG + chr2_2:54523353-54523372 Msa0258280:intron 30.0%
! GAATCACATGATTTGATGAT+AGG + chr2_2:54523391-54523410 Msa0258280:intron 30.0%
TCCATTGTGAAGTCAAATTA+AGG + chr2_2:54523482-54523501 Msa0258280:intron 30.0%
! TCCTTAATTTGACTTCACAA+TGG - chr2_2:54523486-54523505 None:intergenic 30.0%
AAAGCTAAGCTAATGAACTA+TGG - chr2_2:54523679-54523698 None:intergenic 30.0%
ACAAATTTCTCTTTGCATTG+AGG - chr2_2:54523704-54523723 None:intergenic 30.0%
AAAATATGTACCTGCTACAA+GGG - chr2_2:54523864-54523883 None:intergenic 30.0%
! TTGTAGCAGGTACATATTTT+GGG + chr2_2:54523864-54523883 Msa0258280:intron 30.0%
GTTTGGTTAAAATTATGGGT+GGG - chr2_2:54523928-54523947 None:intergenic 30.0%
AGTTTGGTTAAAATTATGGG+TGG - chr2_2:54523929-54523948 None:intergenic 30.0%
TCACATACCAGTAATTAAAG+TGG + chr2_2:54524002-54524021 Msa0258280:intron 30.0%
TTTGAGTCCACTTTAATTAC+TGG - chr2_2:54524012-54524031 None:intergenic 30.0%
! AATTAAAGTGGACTCAAACT+TGG + chr2_2:54524014-54524033 Msa0258280:intron 30.0%
!! AAATTTGTTAGTGGTTTGGA+TGG + chr2_2:54524045-54524064 Msa0258280:intron 30.0%
!!! AGATTTTAAGAAGTGCTGTA+GGG - chr2_2:54524083-54524102 None:intergenic 30.0%
!!! TAGATTTTAAGAAGTGCTGT+AGG - chr2_2:54524084-54524103 None:intergenic 30.0%
TAACAAATGAACATGTACCT+AGG - chr2_2:54524173-54524192 None:intergenic 30.0%
! ATTTGCTACTACCATCATAA+TGG + chr2_2:54524198-54524217 Msa0258280:intron 30.0%
ACAAAATTCTGCCATTATGA+TGG - chr2_2:54524212-54524231 None:intergenic 30.0%
!! TAGATCTTTAAAGTCCTTCA+TGG - chr2_2:54524250-54524269 None:intergenic 30.0%
! GACTTTAAAGATCTAGAATC+TGG + chr2_2:54524255-54524274 Msa0258280:intron 30.0%
TAATATTCTCTCAATCTCTC+AGG - chr2_2:54524384-54524403 None:intergenic 30.0%
TTCATGATTTCAGGCATATT+TGG + chr2_2:54524434-54524453 Msa0258280:intron 30.0%
TATTCCATCTATGACTTACT+TGG + chr2_2:54524512-54524531 Msa0258280:intron 30.0%
!! ATGACTTACTTGGTTCTTTT+TGG + chr2_2:54524522-54524541 Msa0258280:intron 30.0%
!! TGGTTCTTTTTGGAAGTTAT+TGG + chr2_2:54524532-54524551 Msa0258280:intron 30.0%
CTGCATTAAATCCACAAATA+TGG - chr2_2:54524579-54524598 None:intergenic 30.0%
! AAAATATTTTCCTTGCTCTG+AGG - chr2_2:54524673-54524692 None:intergenic 30.0%
TCAGACGAAACTTCAAATAT+AGG + chr2_2:54524695-54524714 Msa0258280:three_prime_UTR 30.0%
TTAGAAGTAGAGGTCAAAAT+AGG - chr2_2:54525047-54525066 None:intergenic 30.0%
!!! TATTTTGACCTCTACTTCTA+AGG + chr2_2:54525046-54525065 Msa0258280:intron 30.0%
! AGCTTTTATTCTTATTCCAG+AGG + chr2_2:54525280-54525299 Msa0258280:intron 30.0%
! GCTTTTATTCTTATTCCAGA+GGG + chr2_2:54525281-54525300 Msa0258280:intron 30.0%
! CTTTTATTCTTATTCCAGAG+GGG + chr2_2:54525282-54525301 Msa0258280:intron 30.0%
! TTTTATTCTTATTCCAGAGG+GGG + chr2_2:54525283-54525302 Msa0258280:intron 30.0%
!!! TCAATTTTTTACTGCTTCAC+AGG + chr2_2:54525315-54525334 Msa0258280:intron 30.0%
TTTACATAAGAACTGCATGA+AGG + chr2_2:54525463-54525482 Msa0258280:three_prime_UTR 30.0%
ACCATAATAAAACAGGTATC+TGG + chr2_2:54525640-54525659 Msa0258280:three_prime_UTR 30.0%
! AGGTTTTACCCAACAATTAA+TGG - chr2_2:54525668-54525687 None:intergenic 30.0%
TTCAAACTTTCACAAGAACT+CGG - chr2_2:54525692-54525711 None:intergenic 30.0%
TCTTGTGAAAGTTTGAATGA+TGG + chr2_2:54525695-54525714 Msa0258280:three_prime_UTR 30.0%
TTCATCATCAACAGCTTCAT+CGG - chr2_2:54518762-54518781 None:intergenic 35.0%
!! GCTGTTGATGATGAATCAAA+CGG + chr2_2:54518767-54518786 Msa0258280:CDS 35.0%
GTTGTAGAAGTGAAATCAGA+TGG + chr2_2:54519114-54519133 Msa0258280:CDS 35.0%
! ATAAGCGCTCAATTAAGTTG+TGG - chr2_2:54519248-54519267 None:intergenic 35.0%
AATAGAAGACTACATGAGGT+AGG - chr2_2:54519595-54519614 None:intergenic 35.0%
TGATGAGCGTTCAATTATTC+AGG + chr2_2:54519725-54519744 Msa0258280:intron 35.0%
AAATTCAATGCCTTCTTTGC+TGG + chr2_2:54519796-54519815 Msa0258280:CDS 35.0%
ATACTACAAAGAGCAGTCTA+TGG - chr2_2:54519903-54519922 None:intergenic 35.0%
CAGTCTATCAACTATCATGA+AGG + chr2_2:54519954-54519973 Msa0258280:intron 35.0%
GCAAGGAAATCGAATCATTA+GGG - chr2_2:54520126-54520145 None:intergenic 35.0%
AGCAAGGAAATCGAATCATT+AGG - chr2_2:54520127-54520146 None:intergenic 35.0%
CGATTTCCTTGCTTTGTATT+AGG + chr2_2:54520134-54520153 Msa0258280:intron 35.0%
! TGATTTTTCACCAGTAAAGG+AGG + chr2_2:54520344-54520363 Msa0258280:intron 35.0%
! GATTTTTCACCAGTAAAGGA+GGG + chr2_2:54520345-54520364 Msa0258280:intron 35.0%
! TCGATTTCAAATGGCATTGA+TGG - chr2_2:54520428-54520447 None:intergenic 35.0%
! ATCAATGCCATTTGAAATCG+AGG + chr2_2:54520427-54520446 Msa0258280:CDS 35.0%
ACGCTAATTATTGAATCAGG+GGG + chr2_2:54520478-54520497 Msa0258280:intron 35.0%
ACTTTACCTTTCCAAACCTT+GGG - chr2_2:54521061-54521080 None:intergenic 35.0%
AACTTTACCTTTCCAAACCT+TGG - chr2_2:54521062-54521081 None:intergenic 35.0%
AAGGTTTGGAAAGGTAAAGT+TGG + chr2_2:54521061-54521080 Msa0258280:intron 35.0%
!!! TTTTAAGGCCACACTTTTCT+TGG - chr2_2:54521212-54521231 None:intergenic 35.0%
!! TAAAGAGGGTATTAACCACA+GGG - chr2_2:54521331-54521350 None:intergenic 35.0%
!! TTAAAGAGGGTATTAACCAC+AGG - chr2_2:54521332-54521351 None:intergenic 35.0%
ATTCAACCATGGTAATTAGG+GGG - chr2_2:54521520-54521539 None:intergenic 35.0%
ACAACCTGAAAATTCAACCA+TGG - chr2_2:54521531-54521550 None:intergenic 35.0%
GCTTTCAAGAATACAACGTT+TGG + chr2_2:54521563-54521582 Msa0258280:CDS 35.0%
TCAAAGCCATAGGAACAAAT+AGG - chr2_2:54521702-54521721 None:intergenic 35.0%
CAACTACATATCAAAGCCAT+AGG - chr2_2:54521712-54521731 None:intergenic 35.0%
GATCTTATAGAATGTCGACA+TGG - chr2_2:54521820-54521839 None:intergenic 35.0%
ATGAAAAAGCTGAACTCAAC+TGG + chr2_2:54522134-54522153 Msa0258280:intron 35.0%
!!! GTAGACTGATTTTTTGCCTT+CGG + chr2_2:54522212-54522231 Msa0258280:intron 35.0%
AAGTTATTCAAATCAGGGAC+AGG - chr2_2:54522281-54522300 None:intergenic 35.0%
ATATCCTCCGTATTTCATCT+GGG - chr2_2:54522557-54522576 None:intergenic 35.0%
TTTCTCATGATATGTAGAGG+AGG + chr2_2:54522746-54522765 Msa0258280:intron 35.0%
TCCTCAACATGACATAAGAA+AGG - chr2_2:54522935-54522954 None:intergenic 35.0%
TTCTTATGTCATGTTGAGGA+AGG + chr2_2:54522935-54522954 Msa0258280:intron 35.0%
TCTTAATGCAGATTCCTTTC+AGG - chr2_2:54523070-54523089 None:intergenic 35.0%
! GCTAACCATGGAATTGTTTT+TGG + chr2_2:54523444-54523463 Msa0258280:intron 35.0%
ACAGTCCAAAAACAATTCCA+TGG - chr2_2:54523452-54523471 None:intergenic 35.0%
ATTAAGGAATTAACCCTTCG+TGG + chr2_2:54523498-54523517 Msa0258280:intron 35.0%
ATGGTGTTTGAGTATATGCA+CGG - chr2_2:54523660-54523679 None:intergenic 35.0%
CAAAATATGTACCTGCTACA+AGG - chr2_2:54523865-54523884 None:intergenic 35.0%
! CTTGTAGCAGGTACATATTT+TGG + chr2_2:54523863-54523882 Msa0258280:intron 35.0%
!!! GATTTTAAGAAGTGCTGTAG+GGG - chr2_2:54524082-54524101 None:intergenic 35.0%
AGTTCCTTTCGAGATCAAAT+TGG - chr2_2:54524286-54524305 None:intergenic 35.0%
!!! AATATGAACTTTTGGCTCTG+TGG + chr2_2:54524315-54524334 Msa0258280:intron 35.0%
AGAACCAAGTAAGTCATAGA+TGG - chr2_2:54524519-54524538 None:intergenic 35.0%
! ACCACATCTGGGATTATTAT+TGG + chr2_2:54524614-54524633 Msa0258280:CDS 35.0%
ACCAATAATAATCCCAGATG+TGG - chr2_2:54524618-54524637 None:intergenic 35.0%
! ACATCTGGGATTATTATTGG+TGG + chr2_2:54524617-54524636 Msa0258280:CDS 35.0%
!! TAGGTAAGTTTGTTACCTTC+TGG + chr2_2:54524714-54524733 Msa0258280:intron 35.0%
TCTATAAACAATTCAGGCTC+AGG + chr2_2:54524996-54525015 Msa0258280:intron 35.0%
AGGTCAAAATAGGTTACGTA+TGG - chr2_2:54525037-54525056 None:intergenic 35.0%
TGACTAAACCTTAGAAGTAG+AGG - chr2_2:54525057-54525076 None:intergenic 35.0%
AAATGAATCAGAATCCCTTC+AGG - chr2_2:54525122-54525141 None:intergenic 35.0%
!! GGGATTCTGATTCATTTTTC+AGG + chr2_2:54525125-54525144 Msa0258280:intron 35.0%
TGTGCACAAAGATCAATCTA+CGG + chr2_2:54525194-54525213 Msa0258280:three_prime_UTR 35.0%
CAAAGATCAATCTACGGAAA+TGG + chr2_2:54525200-54525219 Msa0258280:three_prime_UTR 35.0%
! TCAATCTACGGAAATGGATT+TGG + chr2_2:54525206-54525225 Msa0258280:three_prime_UTR 35.0%
!!! TCACACTGTTTTTAGTGTCA+AGG + chr2_2:54525435-54525454 Msa0258280:three_prime_UTR 35.0%
!! GATCAAGTGAATTTTTAGGG+TGG + chr2_2:54525539-54525558 Msa0258280:three_prime_UTR 35.0%
!! GCCAGATACCTGTTTTATTA+TGG - chr2_2:54525644-54525663 None:intergenic 35.0%
! TATCTGGCTCCATTAATTGT+TGG + chr2_2:54525656-54525675 Msa0258280:three_prime_UTR 35.0%
! ATCTGGCTCCATTAATTGTT+GGG + chr2_2:54525657-54525676 Msa0258280:three_prime_UTR 35.0%
GTTAAATTCAGAAGTGGCGA+CGG - chr2_2:54518503-54518522 None:intergenic 40.0%
AGATTCGTGGAATTGTGGTT+CGG - chr2_2:54518612-54518631 None:intergenic 40.0%
!! ATGTAACGGAGATTTTGCTC+CGG - chr2_2:54518649-54518668 None:intergenic 40.0%
ATTATTCAGGTCTTCGTCCA+CGG + chr2_2:54519738-54519757 Msa0258280:intron 40.0%
!!! CACACACACCAGTTTTGTTT+CGG + chr2_2:54520071-54520090 Msa0258280:intron 40.0%
!!! ACACACACCAGTTTTGTTTC+GGG + chr2_2:54520072-54520091 Msa0258280:intron 40.0%
GTGTATTCCCGAAACAAAAC+TGG - chr2_2:54520082-54520101 None:intergenic 40.0%
TTAAACCCCAAGAGCAACAA+TGG + chr2_2:54520398-54520417 Msa0258280:CDS 40.0%
CAACAGACCTCGATTTCAAA+TGG - chr2_2:54520437-54520456 None:intergenic 40.0%
! CATTTGAAATCGAGGTCTGT+TGG + chr2_2:54520435-54520454 Msa0258280:intron 40.0%
TTAGTGAACCAGACTATGCT+TGG - chr2_2:54520537-54520556 None:intergenic 40.0%
GAGATATGATAGTTAGACCC+AGG + chr2_2:54520785-54520804 Msa0258280:intron 40.0%
! TACTGCTACTCAGTTGTTTC+AGG - chr2_2:54520811-54520830 None:intergenic 40.0%
AAGTATGCATTTATGGCCCA+AGG + chr2_2:54521042-54521061 Msa0258280:intron 40.0%
GTTTGGAAAGGTAAAGTTGG+TGG + chr2_2:54521064-54521083 Msa0258280:intron 40.0%
GGTAACAATTCCATTGCAGA+AGG + chr2_2:54521186-54521205 Msa0258280:CDS 40.0%
! TGTGGCCTTAAAAGTAAGTC+AGG + chr2_2:54521219-54521238 Msa0258280:intron 40.0%
!! TGGCACCTGACTTACTTTTA+AGG - chr2_2:54521227-54521246 None:intergenic 40.0%
ATATGACCAGTTGGTTACCA+TGG + chr2_2:54521399-54521418 Msa0258280:intron 40.0%
TATGACCAGTTGGTTACCAT+GGG + chr2_2:54521400-54521419 Msa0258280:intron 40.0%
GATGACATTGACAAGCAAGA+TGG - chr2_2:54521464-54521483 None:intergenic 40.0%
CTTGCTTGTCAATGTCATCA+TGG + chr2_2:54521465-54521484 Msa0258280:intron 40.0%
CAAGAATACAACGTTTGGAG+CGG + chr2_2:54521568-54521587 Msa0258280:CDS 40.0%
ACCTGTACATGAGCAAAAAC+TGG + chr2_2:54521739-54521758 Msa0258280:intron 40.0%
! ACCAGTTTTTGCTCATGTAC+AGG - chr2_2:54521743-54521762 None:intergenic 40.0%
AGGATTCAGAGACAGGAAAA+GGG - chr2_2:54522261-54522280 None:intergenic 40.0%
TCAAGAAGAGCTTGAACCTA+GGG - chr2_2:54522325-54522344 None:intergenic 40.0%
TTCTTGAGGCCTTACCAAAT+CGG + chr2_2:54522338-54522357 Msa0258280:CDS 40.0%
CCTTACCAAATCGGATAACT+GGG + chr2_2:54522347-54522366 Msa0258280:CDS 40.0%
CTTACCAAATCGGATAACTG+GGG + chr2_2:54522348-54522367 Msa0258280:CDS 40.0%
ATATCCCCAGTTATCCGATT+TGG - chr2_2:54522355-54522374 None:intergenic 40.0%
CCTAACTCAACCTAGCAATT+TGG - chr2_2:54522486-54522505 None:intergenic 40.0%
! CCAAATTGCTAGGTTGAGTT+AGG + chr2_2:54522483-54522502 Msa0258280:intron 40.0%
CATATCCTCCGTATTTCATC+TGG - chr2_2:54522558-54522577 None:intergenic 40.0%
! TTTTGTGTGCTCATGTGTTG+AGG + chr2_2:54522855-54522874 Msa0258280:intron 40.0%
AACAGTGTTGTATGCCTTCA+CGG + chr2_2:54522909-54522928 Msa0258280:intron 40.0%
GCCTTTCTTATGTCATGTTG+AGG + chr2_2:54522931-54522950 Msa0258280:intron 40.0%
! TAGTCAAAGCACTAACATGG+TGG + chr2_2:54522961-54522980 Msa0258280:intron 40.0%
GAGAGCTTTCAGGATGTTAA+TGG - chr2_2:54523030-54523049 None:intergenic 40.0%
ACATGGATAAGAGAGCTTTC+AGG - chr2_2:54523040-54523059 None:intergenic 40.0%
TCCATGTTGCAATACCTGAA+AGG + chr2_2:54523053-54523072 Msa0258280:intron 40.0%
! TCCTTTCAGGTATTGCAACA+TGG - chr2_2:54523057-54523076 None:intergenic 40.0%
TGCAGATGTGAATCTTGTCA+CGG + chr2_2:54523225-54523244 Msa0258280:intron 40.0%
AAAGGCTTCTTGATTCTGCA+AGG + chr2_2:54523256-54523275 Msa0258280:CDS 40.0%
AAGGCTTCTTGATTCTGCAA+GGG + chr2_2:54523257-54523276 Msa0258280:CDS 40.0%
TCTTGATTCTGCAAGGGAAA+TGG + chr2_2:54523263-54523282 Msa0258280:CDS 40.0%
!!! TGTTTTTGGACTGTCATCCT+TGG + chr2_2:54523458-54523477 Msa0258280:intron 40.0%
TTGACTTCACAATGGAACCA+AGG - chr2_2:54523478-54523497 None:intergenic 40.0%
TGACAATATGTGACCACGAA+GGG - chr2_2:54523514-54523533 None:intergenic 40.0%
ATGACAATATGTGACCACGA+AGG - chr2_2:54523515-54523534 None:intergenic 40.0%
CACGGAGTTAGATTCTTAGA+TGG - chr2_2:54523642-54523661 None:intergenic 40.0%
TTACTGATGACAGAGAGCTA+TGG - chr2_2:54523733-54523752 None:intergenic 40.0%
!! TAGCAGGTACATATTTTGGG+TGG + chr2_2:54523867-54523886 Msa0258280:intron 40.0%
GTGCAGTGCATGTTATTATC+AGG - chr2_2:54524140-54524159 None:intergenic 40.0%
CATGTACCTAGGTGGTTAAA+TGG - chr2_2:54524162-54524181 None:intergenic 40.0%
CAAATGAACATGTACCTAGG+TGG - chr2_2:54524170-54524189 None:intergenic 40.0%
GTTGCCAATTTGATCTCGAA+AGG + chr2_2:54524279-54524298 Msa0258280:intron 40.0%
TTGATCTCGAAAGGAACTTG+TGG + chr2_2:54524288-54524307 Msa0258280:intron 40.0%
GTTAAATGCACAAGACTGTC+TGG + chr2_2:54524351-54524370 Msa0258280:intron 40.0%
!!! CATTTTGGTTGACCACATCT+GGG + chr2_2:54524603-54524622 Msa0258280:CDS 40.0%
TGTATAACTACCTCAGAGCA+AGG + chr2_2:54524660-54524679 Msa0258280:CDS 40.0%
TTAAGAAGAGGAGGATTGCT+GGG - chr2_2:54524748-54524767 None:intergenic 40.0%
ATTAAGAAGAGGAGGATTGC+TGG - chr2_2:54524749-54524768 None:intergenic 40.0%
! AATCAGAATCCCTTCAGGTT+CGG - chr2_2:54525117-54525136 None:intergenic 40.0%
TGCACAATCACTGCATTTGT+GGG - chr2_2:54525180-54525199 None:intergenic 40.0%
ACTGCTTCACAGGTTCATAA+TGG + chr2_2:54525325-54525344 Msa0258280:intron 40.0%
AACTTTCACAAGAACTCGGT+AGG - chr2_2:54525688-54525707 None:intergenic 40.0%
GATGGAGAAAGAATACAGAC+TGG + chr2_2:54525713-54525732 Msa0258280:three_prime_UTR 40.0%
!! AACGGAACAAGGTTGGTAGT+TGG - chr2_2:54518451-54518470 None:intergenic 45.0%
GTGAGAGATTCGTGGAATTG+TGG - chr2_2:54518617-54518636 None:intergenic 45.0%
GAAGAAGAGTGAGAGATTCG+TGG - chr2_2:54518625-54518644 None:intergenic 45.0%
AATCTCTCACTCTTCTTCGC+CGG + chr2_2:54518627-54518646 Msa0258280:CDS 45.0%
AATCTCCGTTACATCATCGC+CGG + chr2_2:54518655-54518674 Msa0258280:CDS 45.0%
GTGGATCTACTGCATTTCAC+CGG - chr2_2:54518689-54518708 None:intergenic 45.0%
GGTGAAATGCAGTAGATCCA+CGG + chr2_2:54518688-54518707 Msa0258280:CDS 45.0%
CTTCTTCAATAGAGTCTCCG+AGG + chr2_2:54518807-54518826 Msa0258280:CDS 45.0%
TAGAGAATCTCCAGAAGAGG+TGG - chr2_2:54518840-54518859 None:intergenic 45.0%
CGATAGAGAATCTCCAGAAG+AGG - chr2_2:54518843-54518862 None:intergenic 45.0%
TCTGGAGATTCTCTATCGCT+CGG + chr2_2:54518845-54518864 Msa0258280:CDS 45.0%
CTACATGAGGTAGGTGCTAA+TGG - chr2_2:54519586-54519605 None:intergenic 45.0%
TTATTCAGGTCTTCGTCCAC+GGG + chr2_2:54519739-54519758 Msa0258280:intron 45.0%
AAAACTGGTGTGTGTGCATG+TGG - chr2_2:54520067-54520086 None:intergenic 45.0%
CACGGACCTAATACAAAGCA+AGG - chr2_2:54520143-54520162 None:intergenic 45.0%
AAAAGCTTGCCCTCCTTTAC+TGG - chr2_2:54520357-54520376 None:intergenic 45.0%
!! TTCTAGAGTCATTGCTGCCT+CGG + chr2_2:54520375-54520394 Msa0258280:CDS 45.0%
TCCAACTTCCAAGCATAGTC+TGG + chr2_2:54520526-54520545 Msa0258280:intron 45.0%
ACCAGACTATGCTTGGAAGT+TGG - chr2_2:54520530-54520549 None:intergenic 45.0%
! TACTCAGTTGTTTCAGGCCT+GGG - chr2_2:54520805-54520824 None:intergenic 45.0%
TGCATTTATGGCCCAAGGTT+TGG + chr2_2:54521047-54521066 Msa0258280:intron 45.0%
TTATGGCCCAAGGTTTGGAA+AGG + chr2_2:54521052-54521071 Msa0258280:intron 45.0%
AGTGTAAAAGACGACGCAGA+AGG + chr2_2:54521153-54521172 Msa0258280:CDS 45.0%
GACGCAGAAGGATCTAAAGA+TGG + chr2_2:54521165-54521184 Msa0258280:CDS 45.0%
!! CTTTTCTTGGCCTTCTGCAA+TGG - chr2_2:54521199-54521218 None:intergenic 45.0%
TTACACCCATGGTAACCAAC+TGG - chr2_2:54521408-54521427 None:intergenic 45.0%
TGAGAACACAGTTACACCCA+TGG - chr2_2:54521419-54521438 None:intergenic 45.0%
ATGGTAATTAGGGGGAAGAG+TGG - chr2_2:54521512-54521531 None:intergenic 45.0%
ACTCTTCCCCCTAATTACCA+TGG + chr2_2:54521511-54521530 Msa0258280:intron 45.0%
CTTAGAACCTCGTGTGAGTA+TGG + chr2_2:54521602-54521621 Msa0258280:CDS 45.0%
TGTGTTTCCATACTCACACG+AGG - chr2_2:54521612-54521631 None:intergenic 45.0%
CAGGATTCAGAGACAGGAAA+AGG - chr2_2:54522262-54522281 None:intergenic 45.0%
CTCAAGAAGAGCTTGAACCT+AGG - chr2_2:54522326-54522345 None:intergenic 45.0%
CTAGGTTCAAGCTCTTCTTG+AGG + chr2_2:54522324-54522343 Msa0258280:intron 45.0%
GCCTTACCAAATCGGATAAC+TGG + chr2_2:54522346-54522365 Msa0258280:CDS 45.0%
!! CCCAGTTATCCGATTTGGTA+AGG - chr2_2:54522350-54522369 None:intergenic 45.0%
TCGGATAACTGGGGATATAC+TGG + chr2_2:54522357-54522376 Msa0258280:CDS 45.0%
TCACTTCCTGCCAAATTGCT+AGG + chr2_2:54522473-54522492 Msa0258280:intron 45.0%
ACTCAACCTAGCAATTTGGC+AGG - chr2_2:54522482-54522501 None:intergenic 45.0%
! CTAGGTTGAGTTAGGCTCAA+GGG + chr2_2:54522491-54522510 Msa0258280:intron 45.0%
TGGAGGACCCAGATGAAATA+CGG + chr2_2:54522547-54522566 Msa0258280:CDS 45.0%
GCACTGAGCATTCCACATTA+TGG - chr2_2:54522617-54522636 None:intergenic 45.0%
TCAGCAACCTGCTTGTCTAA+AGG - chr2_2:54522639-54522658 None:intergenic 45.0%
TTTAGACAAGCAGGTTGCTG+AGG + chr2_2:54522638-54522657 Msa0258280:CDS 45.0%
TTAGACAAGCAGGTTGCTGA+GGG + chr2_2:54522639-54522658 Msa0258280:CDS 45.0%
GAGGGTAAGCTGTGAAATAC+TGG + chr2_2:54522657-54522676 Msa0258280:intron 45.0%
CTCATGATATGTAGAGGAGG+AGG + chr2_2:54522749-54522768 Msa0258280:intron 45.0%
ATGATATGTAGAGGAGGAGG+AGG + chr2_2:54522752-54522771 Msa0258280:intron 45.0%
GGAGGAAATTGAGATGCTTC+TGG + chr2_2:54522770-54522789 Msa0258280:CDS 45.0%
TACAACACTGTTGTGCAGTG+TGG - chr2_2:54522901-54522920 None:intergenic 45.0%
TGACATAAGAAAGGCCGTGA+AGG - chr2_2:54522926-54522945 None:intergenic 45.0%
GGTTAGCAAAACGCAGCTTT+GGG - chr2_2:54523431-54523450 None:intergenic 45.0%
TGGTTAGCAAAACGCAGCTT+TGG - chr2_2:54523432-54523451 None:intergenic 45.0%
! AAGCTGCGTTTTGCTAACCA+TGG + chr2_2:54523432-54523451 Msa0258280:intron 45.0%
TGGTTCCATTCAACAGCTCA+CGG + chr2_2:54523774-54523793 Msa0258280:intron 45.0%
ACTGCACCATTTAACCACCT+AGG + chr2_2:54524153-54524172 Msa0258280:intron 45.0%
GAACCTGAAGTCCTATCTTG+AGG + chr2_2:54524460-54524479 Msa0258280:CDS 45.0%
GTTCCTCAAGATAGGACTTC+AGG - chr2_2:54524466-54524485 None:intergenic 45.0%
!!! GCATTTTGGTTGACCACATC+TGG + chr2_2:54524602-54524621 Msa0258280:CDS 45.0%
TAAGAAGAGGAGGATTGCTG+GGG - chr2_2:54524747-54524766 None:intergenic 45.0%
ATTAAGTGCTCCGAACCTGA+AGG + chr2_2:54525104-54525123 Msa0258280:intron 45.0%
TTAAGTGCTCCGAACCTGAA+GGG + chr2_2:54525105-54525124 Msa0258280:intron 45.0%
GTGCACAATCACTGCATTTG+TGG - chr2_2:54525181-54525200 None:intergenic 45.0%
!!! TTTTTATTATTATTATTTGA+TGG - chr2_2:54518375-54518394 None:intergenic 5.0%
TACCAACCTTGTTCCGTTCC+CGG + chr2_2:54518453-54518472 Msa0258280:five_prime_UTR 50.0%
!! TTACGGTGGTTTTGCATGCC+GGG - chr2_2:54518474-54518493 None:intergenic 50.0%
!! GTTACGGTGGTTTTGCATGC+CGG - chr2_2:54518475-54518494 None:intergenic 50.0%
AAATTCAGAAGTGGCGACGG+TGG - chr2_2:54518500-54518519 None:intergenic 50.0%
! TAGTTGGTGCGTGTGAGGAA+AGG - chr2_2:54518569-54518588 None:intergenic 50.0%
GTCGGAGAAGAAGAGGTAGT+TGG - chr2_2:54518585-54518604 None:intergenic 50.0%
!! GAATTGTGGTTCGGTGAGGT+CGG - chr2_2:54518603-54518622 None:intergenic 50.0%
TTCATCGGAATCAGACGCGA+CGG - chr2_2:54518747-54518766 None:intergenic 50.0%
GAAGAGGTGGTTGCAATCCT+CGG - chr2_2:54518827-54518846 None:intergenic 50.0%
AGGATTGCAACCACCTCTTC+TGG + chr2_2:54518827-54518846 Msa0258280:CDS 50.0%
TTGCTCTTGGGGTTTAACCG+AGG - chr2_2:54520395-54520414 None:intergenic 50.0%
AACCCCAAGAGCAACAATGG+AGG + chr2_2:54520401-54520420 Msa0258280:CDS 50.0%
ACCCCAAGAGCAACAATGGA+GGG + chr2_2:54520402-54520421 Msa0258280:CDS 50.0%
! CTACTCAGTTGTTTCAGGCC+TGG - chr2_2:54520806-54520825 None:intergenic 50.0%
GCAGAAGGCCAAGAAAAGTG+TGG + chr2_2:54521201-54521220 Msa0258280:CDS 50.0%
TGTCGACATGGAGAAGTAGC+AGG - chr2_2:54521808-54521827 None:intergenic 50.0%
! GCTAGGTTGAGTTAGGCTCA+AGG + chr2_2:54522490-54522509 Msa0258280:intron 50.0%
! GCAGATGCTGCTTGATCTTC+TGG + chr2_2:54522527-54522546 Msa0258280:CDS 50.0%
! GATGCTGCTTGATCTTCTGG+AGG + chr2_2:54522530-54522549 Msa0258280:CDS 50.0%
AGGACCCAGATGAAATACGG+AGG + chr2_2:54522550-54522569 Msa0258280:CDS 50.0%
CTCAGTGCCTTTAGACAAGC+AGG + chr2_2:54522629-54522648 Msa0258280:CDS 50.0%
CTTGTCACGGTCAAGCTGAA+AGG + chr2_2:54523238-54523257 Msa0258280:CDS 50.0%
ACAATTCTAAACACCCCCCC+TGG - chr2_2:54523341-54523360 None:intergenic 50.0%
TTCCATTCAACAGCTCACGG+AGG + chr2_2:54523777-54523796 Msa0258280:intron 50.0%
ACGGAGGCTTGAAGTTAGCA+GGG + chr2_2:54523793-54523812 Msa0258280:CDS 50.0%
CCACACAGAATGTTCCAACC+TGG - chr2_2:54523832-54523851 None:intergenic 50.0%
! CCAGGTTGGAACATTCTGTG+TGG + chr2_2:54523829-54523848 Msa0258280:CDS 50.0%
GGAACATTCTGTGTGGCAGT+TGG + chr2_2:54523836-54523855 Msa0258280:CDS 50.0%
GTCCTATCTTGAGGAACGTG+TGG + chr2_2:54524469-54524488 Msa0258280:CDS 50.0%
CACCACACGTTCCTCAAGAT+AGG - chr2_2:54524474-54524493 None:intergenic 50.0%
ACGTATGGCAGAGCTTATCG+AGG - chr2_2:54525022-54525041 None:intergenic 50.0%
TTGAATCTGTCTACCCCCTC+TGG - chr2_2:54525299-54525318 None:intergenic 50.0%
CCTAGCGAAGAGTCTCTTGA+TGG - chr2_2:54525369-54525388 None:intergenic 50.0%
CCATCAAGAGACTCTTCGCT+AGG + chr2_2:54525366-54525385 Msa0258280:three_prime_UTR 50.0%
! TCGCTAGGTTGTTGCTTGTG+TGG + chr2_2:54525381-54525400 Msa0258280:three_prime_UTR 50.0%
! CGCTAGGTTGTTGCTTGTGT+GGG + chr2_2:54525382-54525401 Msa0258280:three_prime_UTR 50.0%
!! GTGGTTTTGCATGCCGGGAA+CGG - chr2_2:54518469-54518488 None:intergenic 55.0%
TGGTGCGTGTGAGGAAAGGT+TGG - chr2_2:54518565-54518584 None:intergenic 55.0%
! AGAGGTAGTTGGTGCGTGTG+AGG - chr2_2:54518574-54518593 None:intergenic 55.0%
!! CGTGGAATTGTGGTTCGGTG+AGG - chr2_2:54518607-54518626 None:intergenic 55.0%
GATCCACGGAAGAAAAGCCG+TGG + chr2_2:54518702-54518721 Msa0258280:CDS 55.0%
! GTTCCACGGCTTTTCTTCCG+TGG - chr2_2:54518708-54518727 None:intergenic 55.0%
TCGGTTTCAGCGTCGTTCCA+CGG - chr2_2:54518722-54518741 None:intergenic 55.0%
GGAATCAGACGCGACGGTTT+CGG - chr2_2:54518741-54518760 None:intergenic 55.0%
TCCACGGGACGTTAGAAGTG+TGG + chr2_2:54519754-54519773 Msa0258280:CDS 55.0%
TCCACACTTCTAACGTCCCG+TGG - chr2_2:54519758-54519777 None:intergenic 55.0%
GCCCTCCATTGTTGCTCTTG+GGG - chr2_2:54520406-54520425 None:intergenic 55.0%
GGCCCTCCATTGTTGCTCTT+GGG - chr2_2:54520407-54520426 None:intergenic 55.0%
TGGCCCTCCATTGTTGCTCT+TGG - chr2_2:54520408-54520427 None:intergenic 55.0%
GGTGTAAGTCTCGTTCCCTG+TGG + chr2_2:54521313-54521332 Msa0258280:intron 55.0%
! ACGTTTGGAGCGGAGACTGA+TGG + chr2_2:54521578-54521597 Msa0258280:CDS 55.0%
CAGGGACAGGATTCAGAGAC+AGG - chr2_2:54522268-54522287 None:intergenic 55.0%
AGAGCTTGAACCTAGGGCCA+GGG - chr2_2:54522319-54522338 None:intergenic 55.0%
AAGAGCTTGAACCTAGGGCC+AGG - chr2_2:54522320-54522339 None:intergenic 55.0%
GTTGAGTTAGGCTCAAGGGC+AGG + chr2_2:54522495-54522514 Msa0258280:CDS 55.0%
AGCCTCCGTGAGCTGTTGAA+TGG - chr2_2:54523782-54523801 None:intergenic 55.0%
CACGGAGGCTTGAAGTTAGC+AGG + chr2_2:54523792-54523811 Msa0258280:CDS 55.0%
GAGGCTTGAAGTTAGCAGGG+TGG + chr2_2:54523796-54523815 Msa0258280:CDS 55.0%
GTGGAACTGCTTCTCCAGGT+TGG + chr2_2:54523815-54523834 Msa0258280:CDS 55.0%
AGGAGGATTGCTGGGGAAAC+AGG - chr2_2:54524740-54524759 None:intergenic 55.0%
ATCCATGCACTGCGTGACTC+TGG - chr2_2:54525577-54525596 None:intergenic 55.0%
GAGTCACGCAGTGCATGGAT+CGG + chr2_2:54525577-54525596 Msa0258280:three_prime_UTR 55.0%
TGCCGGGAACGGAACAAGGT+TGG - chr2_2:54518458-54518477 None:intergenic 60.0%
TGCATGCCGGGAACGGAACA+AGG - chr2_2:54518462-54518481 None:intergenic 60.0%
AGTGGCGACGGTGGAGGTTA+CGG - chr2_2:54518491-54518510 None:intergenic 60.0%
TTCAGAAGTGGCGACGGTGG+AGG - chr2_2:54518497-54518516 None:intergenic 60.0%
CGGTGAGGTCGGAGAAGAAG+AGG - chr2_2:54518592-54518611 None:intergenic 60.0%
!! GAGCGCCGGCGATGATGTAA+CGG - chr2_2:54518663-54518682 None:intergenic 60.0%
!! CATTTCACCGGCTTGAGCGC+CGG - chr2_2:54518677-54518696 None:intergenic 60.0%
! TTTTCTCTCCCCCTACCCCC+TGG + chr2_2:54522299-54522318 Msa0258280:intron 60.0%
AGCTTGAACCTAGGGCCAGG+GGG - chr2_2:54522317-54522336 None:intergenic 60.0%
GAGCTTGAACCTAGGGCCAG+GGG - chr2_2:54522318-54522337 None:intergenic 60.0%
CAGGGTGGAACTGCTTCTCC+AGG + chr2_2:54523811-54523830 Msa0258280:CDS 60.0%
! GCAGTTGGTGCCCTTGTAGC+AGG + chr2_2:54523851-54523870 Msa0258280:CDS 60.0%
TGCTGGGGAAACAGGCCAGA+AGG - chr2_2:54524732-54524751 None:intergenic 60.0%
GTCCAGAGTCACGCAGTGCA+TGG + chr2_2:54525572-54525591 Msa0258280:three_prime_UTR 60.0%
ATCATCGCCGGCGCTCAAGC+CGG + chr2_2:54518667-54518686 Msa0258280:CDS 65.0%
AACCTAGGGCCAGGGGGTAG+GGG - chr2_2:54522311-54522330 None:intergenic 65.0%
GAACCTAGGGCCAGGGGGTA+GGG - chr2_2:54522312-54522331 None:intergenic 65.0%
TGAACCTAGGGCCAGGGGGT+AGG - chr2_2:54522313-54522332 None:intergenic 65.0%
GCTCAAGGGCAGGAGCTCTC+AGG + chr2_2:54522505-54522524 Msa0258280:CDS 65.0%
GGCGACGGTGGAGGTTACGG+TGG - chr2_2:54518488-54518507 None:intergenic 70.0%
ACCTAGGGCCAGGGGGTAGG+GGG - chr2_2:54522310-54522329 None:intergenic 70.0%
TCCCCCTACCCCCTGGCCCT+AGG + chr2_2:54522306-54522325 Msa0258280:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 54518327 54525740 54518327 ID=Msa0258280;Name=Msa0258280
chr2_2 mRNA 54518327 54525740 54518327 ID=Msa0258280-mRNA-1;Parent=Msa0258280;Name=Msa0258280-mRNA-1;_AED=0.13;_eAED=0.13;_QI=200|0.86|0.93|0.93|0.86|0.87|16|510|483
chr2_2 exon 54518327 54518889 54518327 ID=Msa0258280-mRNA-1:exon:16400;Parent=Msa0258280-mRNA-1
chr2_2 exon 54519114 54519186 54519114 ID=Msa0258280-mRNA-1:exon:16401;Parent=Msa0258280-mRNA-1
chr2_2 exon 54519747 54519817 54519747 ID=Msa0258280-mRNA-1:exon:16402;Parent=Msa0258280-mRNA-1
chr2_2 exon 54520156 54520241 54520156 ID=Msa0258280-mRNA-1:exon:16403;Parent=Msa0258280-mRNA-1
chr2_2 exon 54520358 54520448 54520358 ID=Msa0258280-mRNA-1:exon:16404;Parent=Msa0258280-mRNA-1
chr2_2 exon 54521147 54521231 54521147 ID=Msa0258280-mRNA-1:exon:16405;Parent=Msa0258280-mRNA-1
chr2_2 exon 54521546 54521631 54521546 ID=Msa0258280-mRNA-1:exon:16406;Parent=Msa0258280-mRNA-1
chr2_2 exon 54522328 54522408 54522328 ID=Msa0258280-mRNA-1:exon:16407;Parent=Msa0258280-mRNA-1
chr2_2 exon 54522495 54522660 54522495 ID=Msa0258280-mRNA-1:exon:16408;Parent=Msa0258280-mRNA-1
chr2_2 exon 54522763 54522808 54522763 ID=Msa0258280-mRNA-1:exon:16409;Parent=Msa0258280-mRNA-1
chr2_2 exon 54523230 54523310 54523230 ID=Msa0258280-mRNA-1:exon:16410;Parent=Msa0258280-mRNA-1
chr2_2 exon 54523790 54523872 54523790 ID=Msa0258280-mRNA-1:exon:16411;Parent=Msa0258280-mRNA-1
chr2_2 exon 54524447 54524490 54524447 ID=Msa0258280-mRNA-1:exon:16412;Parent=Msa0258280-mRNA-1
chr2_2 exon 54524599 54524716 54524599 ID=Msa0258280-mRNA-1:exon:16413;Parent=Msa0258280-mRNA-1
chr2_2 exon 54525147 54525230 54525147 ID=Msa0258280-mRNA-1:exon:16414;Parent=Msa0258280-mRNA-1
chr2_2 exon 54525337 54525740 54525337 ID=Msa0258280-mRNA-1:exon:16415;Parent=Msa0258280-mRNA-1
chr2_2 five_prime_UTR 54518327 54518526 54518327 ID=Msa0258280-mRNA-1:five_prime_utr;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54518527 54518889 54518527 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54519114 54519186 54519114 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54519747 54519817 54519747 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54520156 54520241 54520156 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54520358 54520448 54520358 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54521147 54521231 54521147 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54521546 54521631 54521546 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54522328 54522408 54522328 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54522495 54522660 54522495 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54522763 54522808 54522763 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54523230 54523310 54523230 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54523790 54523872 54523790 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54524447 54524490 54524447 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 CDS 54524599 54524694 54524599 ID=Msa0258280-mRNA-1:cds;Parent=Msa0258280-mRNA-1
chr2_2 three_prime_UTR 54524695 54524716 54524695 ID=Msa0258280-mRNA-1:three_prime_utr;Parent=Msa0258280-mRNA-1
chr2_2 three_prime_UTR 54525147 54525230 54525147 ID=Msa0258280-mRNA-1:three_prime_utr;Parent=Msa0258280-mRNA-1
chr2_2 three_prime_UTR 54525337 54525740 54525337 ID=Msa0258280-mRNA-1:three_prime_utr;Parent=Msa0258280-mRNA-1
Gene Sequence

>Msa0258280

ATGGCTTTAACTCTAACTTCTACTCACTTTCGCTTCCAACCTTTCCTCACACGCACCAACTACCTCTTCTTCTCCGACCTCACCGAACCACAATTCCACGAATCTCTCACTCTTCTTCGCCGGAGCAAAATCTCCGTTACATCATCGCCGGCGCTCAAGCCGGTGAAATGCAGTAGATCCACGGAAGAAAAGCCGTGGAACGACGCTGAAACCGAAACCGTCGCGTCTGATTCCGATGAAGCTGTTGATGATGAATCAAACGGTCAAGCTCCGAGCAAAACTTCTTCAATAGAGTCTCCGAGGATTGCAACCACCTCTTCTGGAGATTCTCTATCGCTCGGAATTCGTGAACCTGTTTATGAAGTTGTAGAAGTGAAATCAGATGGGACAGTATCGACTAGAAAAATCAATAGAAGACAATTATTGAAGTCTAGTGGTCTTCGTCCACGGGACGTTAGAAGTGTGGATCCATCATTGTTTTTGACAAATTCAATGCCTTCTTTGCTGGTCCGTGAGTATGCTATACTTCTAAACTTGGGTTCACTACGAGCAATCGCAATGCAAGATTGTGTACTTATATTTGATTATAATCGTAAAGGAGGGCAAGCTTTTCTAGAGTCATTGCTGCCTCGGTTAAACCCCAAGAGCAACAATGGAGGGCCATCAATGCCATTTGAAATCGAGTGCTTAAGTGTAAAAGACGACGCAGAAGGATCTAAAGATGGTAACAATTCCATTGCAGAAGGCCAAGAAAAGTGTGGCCTTAAAAGTTGTCGAAGCAGCATTGCTTTCAAGAATACAACGTTTGGAGCGGAGACTGATGGACTTAGAACCTCGTGTGAGTATGGAAACACAGTTCAAGCTCTTCTTGAGGCCTTACCAAATCGGATAACTGGGGATATACTGGAGCAACTTCGTATTAGCAAACAAACTTTGGTTGAGTTAGGCTCAAGGGCAGGAGCTCTCAGGCAGATGCTGCTTGATCTTCTGGAGGACCCAGATGAAATACGGAGGATATGTATTATGGGAAGAAATTGTACAATAAATAAAGGAAACCATAATGTGGAATGCTCAGTGCCTTTAGACAAGCAGGTTGCTGAGGAGGAGGAGGAGGAAATTGAGATGCTTCTGGAAAATTATCTCCAAAGATGTGAATCTTGTCACGGTCAAGCTGAAAGGCTTCTTGATTCTGCAAGGGAAATGGAAGATTCTATAGCTGTCAGTTTAAGCTCACGGAGGCTTGAAGTTAGCAGGGTGGAACTGCTTCTCCAGGTTGGAACATTCTGTGTGGCAGTTGGTGCCCTTGTAGCAGGCATATTTGGCATGAACCTGAAGTCCTATCTTGAGGAACGTGTGTTTGCATTTTGGTTGACCACATCTGGGATTATTATTGGTGGCATTGTTGTTTTTTTTATTATGTATAACTACCTCAGAGCAAGGAAAATATTTTGA

Protein sequence

>Msa0258280

MALTLTSTHFRFQPFLTRTNYLFFSDLTEPQFHESLTLLRRSKISVTSSPALKPVKCSRSTEEKPWNDAETETVASDSDEAVDDESNGQAPSKTSSIESPRIATTSSGDSLSLGIREPVYEVVEVKSDGTVSTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPSLLVREYAILLNLGSLRAIAMQDCVLIFDYNRKGGQAFLESLLPRLNPKSNNGGPSMPFEIECLSVKDDAEGSKDGNNSIAEGQEKCGLKSCRSSIAFKNTTFGAETDGLRTSCEYGNTVQALLEALPNRITGDILEQLRISKQTLVELGSRAGALRQMLLDLLEDPDEIRRICIMGRNCTINKGNHNVECSVPLDKQVAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAREMEDSIAVSLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLKSYLEERVFAFWLTTSGIIIGGIVVFFIMYNYLRARKIF*