AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1263610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263610 MtrunA17_Chr4g0075091 96.629 267 9 0 1 267 1 267 0.0 544
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263610 AT1G62250.3 68.919 222 65 3 50 267 46 267 6.11e-107 311
Msa1263610 AT1G62250.1 68.919 222 65 3 50 267 46 267 6.11e-107 311
Msa1263610 AT1G62250.2 64.045 178 60 3 50 223 46 223 1.10e-76 232

Find 69 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATTGAAGAGTCTTTAC+AGG 0.293625 8_2:-66859140 None:intergenic
AAGTTGAGTCTTGGTATAAA+TGG 0.315377 8_2:-66857505 None:intergenic
GGTGCACTGATGAGGGATTA+AGG 0.315940 8_2:+66858645 Msa1263610:CDS
CATAGGCTTGAGCTGAAATA+AGG 0.326137 8_2:-66857297 None:intergenic
CAAGGACTTCCATAAGGTTT+AGG 0.326518 8_2:-66857596 None:intergenic
TTCTTAGTTCATCCTTCTCT+TGG 0.339304 8_2:+66857630 Msa1263610:CDS
TTTCAGGAGTTCATCACTGC+TGG 0.339359 8_2:+66858602 Msa1263610:intron
GTGTTTCACATTGGCTGGCT+AGG 0.379694 8_2:+66859446 Msa1263610:three_prime_UTR
TCACCTTGTTCAGGAGATAT+AGG 0.401117 8_2:+66857860 Msa1263610:CDS
GACTCTTCAATTAGAGCAAA+CGG 0.420903 8_2:+66859148 Msa1263610:CDS
TCATGGTTCAAACATGTTAA+CGG 0.429275 8_2:+66857454 Msa1263610:exon
ACATAGCCATCACCTTGTTC+AGG 0.430952 8_2:+66857851 Msa1263610:CDS
TTCAGGAGTTCATCACTGCT+GGG 0.433998 8_2:+66858603 Msa1263610:intron
GAGCTGTGTTTCACATTGGC+TGG 0.438773 8_2:+66859441 Msa1263610:three_prime_UTR
ATAAGGAAATAATGAAAAGT+TGG 0.439347 8_2:-66857280 None:intergenic
TGTTTCACATTGGCTGGCTA+GGG 0.444223 8_2:+66859447 Msa1263610:three_prime_UTR
GATCTCATTGTCTATACTCT+TGG 0.455261 8_2:-66859384 None:intergenic
GGAAATAATGAAAAGTTGGA+TGG 0.463869 8_2:-66857276 None:intergenic
GCCTATGCTTACCCTCAAAC+AGG 0.467145 8_2:+66857313 Msa1263610:five_prime_UTR
TGCTGAAGACTAATCGCATT+CGG 0.468961 8_2:-66859211 None:intergenic
TGGAAGTTTAGAATAGCTCT+TGG 0.469554 8_2:-66857485 None:intergenic
CTGCATGGATTGTTGAGAAA+AGG 0.482340 8_2:-66859419 None:intergenic
TTACTACAAGGACTTCCATA+AGG 0.484595 8_2:-66857602 None:intergenic
CCCCACCGACTATTGTTAGA+TGG 0.484658 8_2:+66858932 Msa1263610:CDS
GTTGTGTTGAAGTTGAGTCT+TGG 0.496097 8_2:-66857514 None:intergenic
ATTAGAGCAAACGGCAGTGA+TGG 0.502471 8_2:+66859157 Msa1263610:CDS
AGCAATATCATATTATATCA+TGG 0.512431 8_2:+66857437 Msa1263610:five_prime_UTR
GGGGTGAATGCATATGAACT+TGG 0.519443 8_2:+66858623 Msa1263610:CDS
ATCTAAAATCATATCTAATG+AGG 0.520867 8_2:+66858745 Msa1263610:CDS
AAGAGGGATATACCTGTTTG+AGG 0.523927 8_2:-66857325 None:intergenic
AGAGGGATATACCTGTTTGA+GGG 0.543625 8_2:-66857324 None:intergenic
GAAATAATGAAAAGTTGGAT+GGG 0.545995 8_2:-66857275 None:intergenic
AATTTCACTGATCGTGGTGG+AGG 0.547938 8_2:+66857883 Msa1263610:CDS
ATTGAAGCAATGCAAAGTTA+CGG 0.554118 8_2:+66858704 Msa1263610:CDS
TTAGAGCAAACGGCAGTGAT+GGG 0.555480 8_2:+66859158 Msa1263610:CDS
GAAAGAGCTTACTGACATGA+AGG 0.564447 8_2:+66858667 Msa1263610:CDS
CTTACTGACATGAAGGACTC+TGG 0.574764 8_2:+66858674 Msa1263610:CDS
ACCATCTAACAATAGTCGGT+GGG 0.578238 8_2:-66858933 None:intergenic
TGAAAAGCGACACAAATGCC+TGG 0.580887 8_2:+66857658 Msa1263610:CDS
CTAAGAAATATGTTACTACA+AGG 0.583377 8_2:-66857614 None:intergenic
CCATCTAACAATAGTCGGTG+GGG 0.583403 8_2:-66858932 None:intergenic
ATGTGAAACACAGCTCTGCA+TGG 0.593881 8_2:-66859434 None:intergenic
ATTAGTCTTCAGCACCCTTG+AGG 0.597661 8_2:+66859220 Msa1263610:CDS
ATATCTCCTGAACAAGGTGA+TGG 0.598635 8_2:-66857857 None:intergenic
GACCATCTAACAATAGTCGG+TGG 0.598967 8_2:-66858934 None:intergenic
TGAACTTGGGTGCACTGATG+AGG 0.602547 8_2:+66858637 Msa1263610:CDS
TGCAGAGCTGTGTTTCACAT+TGG 0.606651 8_2:+66859437 Msa1263610:three_prime_UTR
ACCTGTTTGAGGGTAAGCAT+AGG 0.609631 8_2:-66857314 None:intergenic
GATGACCATCTAACAATAGT+CGG 0.613459 8_2:-66858937 None:intergenic
ATTGATATACATAAAATACA+TGG 0.618400 8_2:-66859566 None:intergenic
TATAGGAATTTCACTGATCG+TGG 0.622160 8_2:+66857877 Msa1263610:CDS
AAGCAATGCAAAGTTACGGT+GGG 0.622956 8_2:+66858708 Msa1263610:CDS
ATGTAAATTACTGACCTCAA+GGG 0.624330 8_2:-66859234 None:intergenic
GAAGTGAGACTTCAGTGGAA+AGG 0.627135 8_2:+66858979 Msa1263610:CDS
GAACTTGGGTGCACTGATGA+GGG 0.632248 8_2:+66858638 Msa1263610:CDS
GGGTGAATGCATATGAACTT+GGG 0.632813 8_2:+66858624 Msa1263610:CDS
CATCTAACAATAGTCGGTGG+GGG 0.633024 8_2:-66858931 None:intergenic
TCAGGAGTTCATCACTGCTG+GGG 0.635874 8_2:+66858604 Msa1263610:intron
ATTCCTATATCTCCTGAACA+AGG 0.635905 8_2:-66857863 None:intergenic
GAAGCAATGCAAAGTTACGG+TGG 0.636433 8_2:+66858707 Msa1263610:CDS
AGGAATTTCACTGATCGTGG+TGG 0.644671 8_2:+66857880 Msa1263610:CDS
GTCTATACTCTTGGCCACTG+TGG 0.644921 8_2:-66859375 None:intergenic
ATTCGGCTAGCAACAACTGA+CGG 0.655387 8_2:-66859194 None:intergenic
TGGCTATGTTGCGTGAAGAA+CGG 0.675675 8_2:-66857837 None:intergenic
AGTCTCACTTCATCTGACAC+AGG 0.679981 8_2:-66858967 None:intergenic
CAGATGAAGTGAGACTTCAG+TGG 0.693954 8_2:+66858974 Msa1263610:CDS
AGATTGATGAGTGCATTCTG+TGG 0.715212 8_2:+66858875 Msa1263610:intron
ATGATATAATTGCAGCAGTG+TGG 0.719749 8_2:+66857781 Msa1263610:intron
TGCAGGTAGTGAGTCCACAG+TGG 0.754596 8_2:+66859361 Msa1263610:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAGATATAAAAACATA+AGG - chr8_2:66857351-66857370 None:intergenic 15.0%
!! CTTTCTATTAATTAATTTCT+TGG + chr8_2:66857401-66857420 Msa1263610:intron 15.0%
!! AGACTAATAAATAAATCAAA+TGG - chr8_2:66857732-66857751 None:intergenic 15.0%
!! AAAATTTATTTGCATAACAA+AGG + chr8_2:66859280-66859299 Msa1263610:intron 15.0%
!! ATTGATATACATAAAATACA+TGG - chr8_2:66859569-66859588 None:intergenic 15.0%
!!! GTATATATAATGATTTTTAC+TGG - chr8_2:66859639-66859658 None:intergenic 15.0%
!! TAGATAGATATAAAAACATA+AGG - chr8_2:66857351-66857370 None:intergenic 15.0%
!! CTTTCTATTAATTAATTTCT+TGG + chr8_2:66857401-66857420 Msa1263610:intron 15.0%
!! AGACTAATAAATAAATCAAA+TGG - chr8_2:66857732-66857751 None:intergenic 15.0%
!! AAAATTTATTTGCATAACAA+AGG + chr8_2:66859280-66859299 Msa1263610:intron 15.0%
!! ATTGATATACATAAAATACA+TGG - chr8_2:66859569-66859588 None:intergenic 15.0%
!!! GTATATATAATGATTTTTAC+TGG - chr8_2:66859639-66859658 None:intergenic 15.0%
!! ATAAGGAAATAATGAAAAGT+TGG - chr8_2:66857283-66857302 None:intergenic 20.0%
!! ATATAAAAACATAAGGAAGA+GGG - chr8_2:66857344-66857363 None:intergenic 20.0%
!!! TAATTTCTTGGTTATTTTGA+AGG + chr8_2:66857413-66857432 Msa1263610:intron 20.0%
!!! AATTTCTTGGTTATTTTGAA+GGG + chr8_2:66857414-66857433 Msa1263610:intron 20.0%
!! AGCAATATCATATTATATCA+TGG + chr8_2:66857437-66857456 Msa1263610:five_prime_UTR 20.0%
!!! TTTTCTTTTAGTGATTGATA+TGG + chr8_2:66857751-66857770 Msa1263610:intron 20.0%
!! TATAAGGAATGCATAAAAAT+GGG - chr8_2:66858095-66858114 None:intergenic 20.0%
!!! ATCTAAAATCATATCTAATG+AGG + chr8_2:66858745-66858764 Msa1263610:CDS 20.0%
!!! TTCATGTTTTTTTTTCTACT+AGG + chr8_2:66859070-66859089 Msa1263610:intron 20.0%
!! ATAAGGAAATAATGAAAAGT+TGG - chr8_2:66857283-66857302 None:intergenic 20.0%
!! ATATAAAAACATAAGGAAGA+GGG - chr8_2:66857344-66857363 None:intergenic 20.0%
!!! TAATTTCTTGGTTATTTTGA+AGG + chr8_2:66857413-66857432 Msa1263610:intron 20.0%
!!! AATTTCTTGGTTATTTTGAA+GGG + chr8_2:66857414-66857433 Msa1263610:intron 20.0%
!! AGCAATATCATATTATATCA+TGG + chr8_2:66857437-66857456 Msa1263610:five_prime_UTR 20.0%
!!! TTTTCTTTTAGTGATTGATA+TGG + chr8_2:66857751-66857770 Msa1263610:intron 20.0%
!! TATAAGGAATGCATAAAAAT+GGG - chr8_2:66858095-66858114 None:intergenic 20.0%
!!! ATCTAAAATCATATCTAATG+AGG + chr8_2:66858745-66858764 Msa1263610:CDS 20.0%
!!! TTCATGTTTTTTTTTCTACT+AGG + chr8_2:66859070-66859089 Msa1263610:intron 20.0%
! GAAATAATGAAAAGTTGGAT+GGG - chr8_2:66857278-66857297 None:intergenic 25.0%
! GATATAAAAACATAAGGAAG+AGG - chr8_2:66857345-66857364 None:intergenic 25.0%
! CTAAGAAATATGTTACTACA+AGG - chr8_2:66857617-66857636 None:intergenic 25.0%
!! TTTAGTGATTGATATGGTTT+TGG + chr8_2:66857757-66857776 Msa1263610:intron 25.0%
!! ATTTTCAATTATGATGCTAG+AGG - chr8_2:66857934-66857953 None:intergenic 25.0%
! ATAAGGAATGCATAAAAATG+GGG - chr8_2:66858094-66858113 None:intergenic 25.0%
! CTATAAGGAATGCATAAAAA+TGG - chr8_2:66858096-66858115 None:intergenic 25.0%
! CTGGTTTAATTAAGTGTAAT+AGG + chr8_2:66858123-66858142 Msa1263610:intron 25.0%
! CTAATTAGAGAGTTCAAATT+CGG - chr8_2:66858167-66858186 None:intergenic 25.0%
! AAACTCTATGTTTGAATTTG+TGG + chr8_2:66858207-66858226 Msa1263610:intron 25.0%
! ATGTTGAGTTATACAAGAAA+GGG - chr8_2:66858497-66858516 None:intergenic 25.0%
!! GATTTACGTTTTTCATTTTC+AGG + chr8_2:66858586-66858605 Msa1263610:intron 25.0%
!! AGCAAATGCATATTTTATGA+AGG + chr8_2:66859017-66859036 Msa1263610:CDS 25.0%
!! GCAAATGCATATTTTATGAA+GGG + chr8_2:66859018-66859037 Msa1263610:CDS 25.0%
!!! ATGTTTTTTTTTCTACTAGG+TGG + chr8_2:66859073-66859092 Msa1263610:intron 25.0%
!!! TGTTTTTTTTTCTACTAGGT+GGG + chr8_2:66859074-66859093 Msa1263610:intron 25.0%
!! AATGATTTTTACTGGACATA+AGG - chr8_2:66859631-66859650 None:intergenic 25.0%
! GAAATAATGAAAAGTTGGAT+GGG - chr8_2:66857278-66857297 None:intergenic 25.0%
! GATATAAAAACATAAGGAAG+AGG - chr8_2:66857345-66857364 None:intergenic 25.0%
! CTAAGAAATATGTTACTACA+AGG - chr8_2:66857617-66857636 None:intergenic 25.0%
!! TTTAGTGATTGATATGGTTT+TGG + chr8_2:66857757-66857776 Msa1263610:intron 25.0%
!! ATTTTCAATTATGATGCTAG+AGG - chr8_2:66857934-66857953 None:intergenic 25.0%
! ATAAGGAATGCATAAAAATG+GGG - chr8_2:66858094-66858113 None:intergenic 25.0%
! CTATAAGGAATGCATAAAAA+TGG - chr8_2:66858096-66858115 None:intergenic 25.0%
! CTGGTTTAATTAAGTGTAAT+AGG + chr8_2:66858123-66858142 Msa1263610:intron 25.0%
! CTAATTAGAGAGTTCAAATT+CGG - chr8_2:66858167-66858186 None:intergenic 25.0%
! AAACTCTATGTTTGAATTTG+TGG + chr8_2:66858207-66858226 Msa1263610:intron 25.0%
! ATGTTGAGTTATACAAGAAA+GGG - chr8_2:66858497-66858516 None:intergenic 25.0%
!! GATTTACGTTTTTCATTTTC+AGG + chr8_2:66858586-66858605 Msa1263610:intron 25.0%
!! AGCAAATGCATATTTTATGA+AGG + chr8_2:66859017-66859036 Msa1263610:CDS 25.0%
!! GCAAATGCATATTTTATGAA+GGG + chr8_2:66859018-66859037 Msa1263610:CDS 25.0%
!!! ATGTTTTTTTTTCTACTAGG+TGG + chr8_2:66859073-66859092 Msa1263610:intron 25.0%
!!! TGTTTTTTTTTCTACTAGGT+GGG + chr8_2:66859074-66859093 Msa1263610:intron 25.0%
!! AATGATTTTTACTGGACATA+AGG - chr8_2:66859631-66859650 None:intergenic 25.0%
GGAAATAATGAAAAGTTGGA+TGG - chr8_2:66857279-66857298 None:intergenic 30.0%
TCATGGTTCAAACATGTTAA+CGG + chr8_2:66857454-66857473 Msa1263610:exon 30.0%
AAGTTGAGTCTTGGTATAAA+TGG - chr8_2:66857508-66857527 None:intergenic 30.0%
!! TCTACTTTTCCTAAACCTTA+TGG + chr8_2:66857587-66857606 Msa1263610:CDS 30.0%
ACGTTGTACGTTGTTATAAT+AGG + chr8_2:66858028-66858047 Msa1263610:intron 30.0%
TAAACCAGCTCAAAACTATA+AGG - chr8_2:66858111-66858130 None:intergenic 30.0%
! GAACTCTCTAATTAGTTCTT+TGG + chr8_2:66858172-66858191 Msa1263610:intron 30.0%
! GTTTGAATTTGTGGTGATTT+TGG + chr8_2:66858216-66858235 Msa1263610:intron 30.0%
GATCTTGTTGAATCTTCAAA+TGG + chr8_2:66858258-66858277 Msa1263610:intron 30.0%
CATGTTGAGTTATACAAGAA+AGG - chr8_2:66858498-66858517 None:intergenic 30.0%
ACCTCTTATTGGAATATAGA+GGG - chr8_2:66858566-66858585 None:intergenic 30.0%
AAACGTAAATCACCTCTTAT+TGG - chr8_2:66858577-66858596 None:intergenic 30.0%
ATTGAAGCAATGCAAAGTTA+CGG + chr8_2:66858704-66858723 Msa1263610:CDS 30.0%
AGATATCGAGTTACCTTATT+TGG + chr8_2:66858833-66858852 Msa1263610:intron 30.0%
CACAAAAAACATGCCAAATA+AGG - chr8_2:66858849-66858868 None:intergenic 30.0%
! TGCATATTTTATGAAGGGAA+TGG + chr8_2:66859023-66859042 Msa1263610:CDS 30.0%
TCTAATTGAAGAGTCTTTAC+AGG - chr8_2:66859143-66859162 None:intergenic 30.0%
ATGTAAATTACTGACCTCAA+GGG - chr8_2:66859237-66859256 None:intergenic 30.0%
AATGTAAATTACTGACCTCA+AGG - chr8_2:66859238-66859257 None:intergenic 30.0%
AAGTGTATAGACATATGGTT+TGG - chr8_2:66859309-66859328 None:intergenic 30.0%
GGAAATAATGAAAAGTTGGA+TGG - chr8_2:66857279-66857298 None:intergenic 30.0%
TCATGGTTCAAACATGTTAA+CGG + chr8_2:66857454-66857473 Msa1263610:exon 30.0%
AAGTTGAGTCTTGGTATAAA+TGG - chr8_2:66857508-66857527 None:intergenic 30.0%
!! TCTACTTTTCCTAAACCTTA+TGG + chr8_2:66857587-66857606 Msa1263610:CDS 30.0%
ACGTTGTACGTTGTTATAAT+AGG + chr8_2:66858028-66858047 Msa1263610:intron 30.0%
TAAACCAGCTCAAAACTATA+AGG - chr8_2:66858111-66858130 None:intergenic 30.0%
! GAACTCTCTAATTAGTTCTT+TGG + chr8_2:66858172-66858191 Msa1263610:intron 30.0%
! GTTTGAATTTGTGGTGATTT+TGG + chr8_2:66858216-66858235 Msa1263610:intron 30.0%
GATCTTGTTGAATCTTCAAA+TGG + chr8_2:66858258-66858277 Msa1263610:intron 30.0%
CATGTTGAGTTATACAAGAA+AGG - chr8_2:66858498-66858517 None:intergenic 30.0%
ACCTCTTATTGGAATATAGA+GGG - chr8_2:66858566-66858585 None:intergenic 30.0%
AAACGTAAATCACCTCTTAT+TGG - chr8_2:66858577-66858596 None:intergenic 30.0%
ATTGAAGCAATGCAAAGTTA+CGG + chr8_2:66858704-66858723 Msa1263610:CDS 30.0%
AGATATCGAGTTACCTTATT+TGG + chr8_2:66858833-66858852 Msa1263610:intron 30.0%
CACAAAAAACATGCCAAATA+AGG - chr8_2:66858849-66858868 None:intergenic 30.0%
! TGCATATTTTATGAAGGGAA+TGG + chr8_2:66859023-66859042 Msa1263610:CDS 30.0%
TCTAATTGAAGAGTCTTTAC+AGG - chr8_2:66859143-66859162 None:intergenic 30.0%
ATGTAAATTACTGACCTCAA+GGG - chr8_2:66859237-66859256 None:intergenic 30.0%
AATGTAAATTACTGACCTCA+AGG - chr8_2:66859238-66859257 None:intergenic 30.0%
AAGTGTATAGACATATGGTT+TGG - chr8_2:66859309-66859328 None:intergenic 30.0%
! TGGAAGTTTAGAATAGCTCT+TGG - chr8_2:66857488-66857507 None:intergenic 35.0%
TTACTACAAGGACTTCCATA+AGG - chr8_2:66857605-66857624 None:intergenic 35.0%
TTCTTAGTTCATCCTTCTCT+TGG + chr8_2:66857630-66857649 Msa1263610:CDS 35.0%
! CTTTTCACAATTCCAAGAGA+AGG - chr8_2:66857645-66857664 None:intergenic 35.0%
CCAAAGTAGATGAAGAATTG+AGG - chr8_2:66857708-66857727 None:intergenic 35.0%
CCTCAATTCTTCATCTACTT+TGG + chr8_2:66857705-66857724 Msa1263610:intron 35.0%
ATGATATAATTGCAGCAGTG+TGG + chr8_2:66857781-66857800 Msa1263610:intron 35.0%
ATTCCTATATCTCCTGAACA+AGG - chr8_2:66857866-66857885 None:intergenic 35.0%
TATAGGAATTTCACTGATCG+TGG + chr8_2:66857877-66857896 Msa1263610:CDS 35.0%
!!! CATTCCTTATAGTTTTGAGC+TGG + chr8_2:66858104-66858123 Msa1263610:intron 35.0%
TAGTTCTTTGGCAAAGCAAT+AGG + chr8_2:66858184-66858203 Msa1263610:intron 35.0%
! AACTTTTGCGAAAATCACGT+TGG + chr8_2:66858282-66858301 Msa1263610:intron 35.0%
CAATATGTATGCCACATTCA+CGG + chr8_2:66858305-66858324 Msa1263610:intron 35.0%
TCCCTCTATATTCCAATAAG+AGG + chr8_2:66858562-66858581 Msa1263610:intron 35.0%
CACCTCTTATTGGAATATAG+AGG - chr8_2:66858567-66858586 None:intergenic 35.0%
GATGACCATCTAACAATAGT+CGG - chr8_2:66858940-66858959 None:intergenic 35.0%
! ATTTTATGAAGGGAATGGCT+TGG + chr8_2:66859028-66859047 Msa1263610:CDS 35.0%
TCAGTAAACACATAGTAACC+AGG - chr8_2:66859114-66859133 None:intergenic 35.0%
GGTTACTATGTGTTTACTGA+AGG + chr8_2:66859114-66859133 Msa1263610:intron 35.0%
GACTCTTCAATTAGAGCAAA+CGG + chr8_2:66859148-66859167 Msa1263610:CDS 35.0%
CTAGCAAGTGTATAGACATA+TGG - chr8_2:66859314-66859333 None:intergenic 35.0%
GATCTCATTGTCTATACTCT+TGG - chr8_2:66859387-66859406 None:intergenic 35.0%
! TGGAAGTTTAGAATAGCTCT+TGG - chr8_2:66857488-66857507 None:intergenic 35.0%
TTACTACAAGGACTTCCATA+AGG - chr8_2:66857605-66857624 None:intergenic 35.0%
TTCTTAGTTCATCCTTCTCT+TGG + chr8_2:66857630-66857649 Msa1263610:CDS 35.0%
! CTTTTCACAATTCCAAGAGA+AGG - chr8_2:66857645-66857664 None:intergenic 35.0%
CCAAAGTAGATGAAGAATTG+AGG - chr8_2:66857708-66857727 None:intergenic 35.0%
CCTCAATTCTTCATCTACTT+TGG + chr8_2:66857705-66857724 Msa1263610:intron 35.0%
ATGATATAATTGCAGCAGTG+TGG + chr8_2:66857781-66857800 Msa1263610:intron 35.0%
ATTCCTATATCTCCTGAACA+AGG - chr8_2:66857866-66857885 None:intergenic 35.0%
TATAGGAATTTCACTGATCG+TGG + chr8_2:66857877-66857896 Msa1263610:CDS 35.0%
!!! CATTCCTTATAGTTTTGAGC+TGG + chr8_2:66858104-66858123 Msa1263610:intron 35.0%
TAGTTCTTTGGCAAAGCAAT+AGG + chr8_2:66858184-66858203 Msa1263610:intron 35.0%
! AACTTTTGCGAAAATCACGT+TGG + chr8_2:66858282-66858301 Msa1263610:intron 35.0%
CAATATGTATGCCACATTCA+CGG + chr8_2:66858305-66858324 Msa1263610:intron 35.0%
TCCCTCTATATTCCAATAAG+AGG + chr8_2:66858562-66858581 Msa1263610:intron 35.0%
CACCTCTTATTGGAATATAG+AGG - chr8_2:66858567-66858586 None:intergenic 35.0%
GATGACCATCTAACAATAGT+CGG - chr8_2:66858940-66858959 None:intergenic 35.0%
! ATTTTATGAAGGGAATGGCT+TGG + chr8_2:66859028-66859047 Msa1263610:CDS 35.0%
TCAGTAAACACATAGTAACC+AGG - chr8_2:66859114-66859133 None:intergenic 35.0%
GGTTACTATGTGTTTACTGA+AGG + chr8_2:66859114-66859133 Msa1263610:intron 35.0%
GACTCTTCAATTAGAGCAAA+CGG + chr8_2:66859148-66859167 Msa1263610:CDS 35.0%
CTAGCAAGTGTATAGACATA+TGG - chr8_2:66859314-66859333 None:intergenic 35.0%
GATCTCATTGTCTATACTCT+TGG - chr8_2:66859387-66859406 None:intergenic 35.0%
CATAGGCTTGAGCTGAAATA+AGG - chr8_2:66857300-66857319 None:intergenic 40.0%
AGAGGGATATACCTGTTTGA+GGG - chr8_2:66857327-66857346 None:intergenic 40.0%
AAGAGGGATATACCTGTTTG+AGG - chr8_2:66857328-66857347 None:intergenic 40.0%
GTTGTGTTGAAGTTGAGTCT+TGG - chr8_2:66857517-66857536 None:intergenic 40.0%
CAAGGACTTCCATAAGGTTT+AGG - chr8_2:66857599-66857618 None:intergenic 40.0%
AGCATGCATGCTTAATTACC+AGG - chr8_2:66857679-66857698 None:intergenic 40.0%
ATATCTCCTGAACAAGGTGA+TGG - chr8_2:66857860-66857879 None:intergenic 40.0%
TCACCTTGTTCAGGAGATAT+AGG + chr8_2:66857860-66857879 Msa1263610:CDS 40.0%
AATTATGATGCTAGAGGCAG+TGG - chr8_2:66857928-66857947 None:intergenic 40.0%
CGTACAACGTGTATATCAAC+TGG - chr8_2:66858018-66858037 None:intergenic 40.0%
GTTTACATTGACCGTGAATG+TGG - chr8_2:66858319-66858338 None:intergenic 40.0%
! CCAACTAGCAAAAGGTGTAA+AGG - chr8_2:66858537-66858556 None:intergenic 40.0%
! CCTTTACACCTTTTGCTAGT+TGG + chr8_2:66858534-66858553 Msa1263610:intron 40.0%
GGAAAGAACCAACTAGCAAA+AGG - chr8_2:66858545-66858564 None:intergenic 40.0%
GGGTGAATGCATATGAACTT+GGG + chr8_2:66858624-66858643 Msa1263610:CDS 40.0%
GAAAGAGCTTACTGACATGA+AGG + chr8_2:66858667-66858686 Msa1263610:CDS 40.0%
AAGCAATGCAAAGTTACGGT+GGG + chr8_2:66858708-66858727 Msa1263610:CDS 40.0%
AGATTGATGAGTGCATTCTG+TGG + chr8_2:66858875-66858894 Msa1263610:intron 40.0%
ACCATCTAACAATAGTCGGT+GGG - chr8_2:66858936-66858955 None:intergenic 40.0%
TGGGTGAATTGTTCTTTACC+TGG + chr8_2:66859093-66859112 Msa1263610:intron 40.0%
TGCTGAAGACTAATCGCATT+CGG - chr8_2:66859214-66859233 None:intergenic 40.0%
AAACTTGAATTCGCTGTTGC+AGG + chr8_2:66859344-66859363 Msa1263610:intron 40.0%
! CTGCATGGATTGTTGAGAAA+AGG - chr8_2:66859422-66859441 None:intergenic 40.0%
CATAGGCTTGAGCTGAAATA+AGG - chr8_2:66857300-66857319 None:intergenic 40.0%
AGAGGGATATACCTGTTTGA+GGG - chr8_2:66857327-66857346 None:intergenic 40.0%
AAGAGGGATATACCTGTTTG+AGG - chr8_2:66857328-66857347 None:intergenic 40.0%
GTTGTGTTGAAGTTGAGTCT+TGG - chr8_2:66857517-66857536 None:intergenic 40.0%
CAAGGACTTCCATAAGGTTT+AGG - chr8_2:66857599-66857618 None:intergenic 40.0%
AGCATGCATGCTTAATTACC+AGG - chr8_2:66857679-66857698 None:intergenic 40.0%
ATATCTCCTGAACAAGGTGA+TGG - chr8_2:66857860-66857879 None:intergenic 40.0%
TCACCTTGTTCAGGAGATAT+AGG + chr8_2:66857860-66857879 Msa1263610:CDS 40.0%
AATTATGATGCTAGAGGCAG+TGG - chr8_2:66857928-66857947 None:intergenic 40.0%
CGTACAACGTGTATATCAAC+TGG - chr8_2:66858018-66858037 None:intergenic 40.0%
GTTTACATTGACCGTGAATG+TGG - chr8_2:66858319-66858338 None:intergenic 40.0%
! CCAACTAGCAAAAGGTGTAA+AGG - chr8_2:66858537-66858556 None:intergenic 40.0%
! CCTTTACACCTTTTGCTAGT+TGG + chr8_2:66858534-66858553 Msa1263610:intron 40.0%
GGAAAGAACCAACTAGCAAA+AGG - chr8_2:66858545-66858564 None:intergenic 40.0%
GGGTGAATGCATATGAACTT+GGG + chr8_2:66858624-66858643 Msa1263610:CDS 40.0%
GAAAGAGCTTACTGACATGA+AGG + chr8_2:66858667-66858686 Msa1263610:CDS 40.0%
AAGCAATGCAAAGTTACGGT+GGG + chr8_2:66858708-66858727 Msa1263610:CDS 40.0%
AGATTGATGAGTGCATTCTG+TGG + chr8_2:66858875-66858894 Msa1263610:intron 40.0%
ACCATCTAACAATAGTCGGT+GGG - chr8_2:66858936-66858955 None:intergenic 40.0%
TGGGTGAATTGTTCTTTACC+TGG + chr8_2:66859093-66859112 Msa1263610:intron 40.0%
TGCTGAAGACTAATCGCATT+CGG - chr8_2:66859214-66859233 None:intergenic 40.0%
AAACTTGAATTCGCTGTTGC+AGG + chr8_2:66859344-66859363 Msa1263610:intron 40.0%
! CTGCATGGATTGTTGAGAAA+AGG - chr8_2:66859422-66859441 None:intergenic 40.0%
ACCTGTTTGAGGGTAAGCAT+AGG - chr8_2:66857317-66857336 None:intergenic 45.0%
TGAAAAGCGACACAAATGCC+TGG + chr8_2:66857658-66857677 Msa1263610:CDS 45.0%
TGGCTATGTTGCGTGAAGAA+CGG - chr8_2:66857840-66857859 None:intergenic 45.0%
ACATAGCCATCACCTTGTTC+AGG + chr8_2:66857851-66857870 Msa1263610:CDS 45.0%
AGGAATTTCACTGATCGTGG+TGG + chr8_2:66857880-66857899 Msa1263610:CDS 45.0%
AATTTCACTGATCGTGGTGG+AGG + chr8_2:66857883-66857902 Msa1263610:CDS 45.0%
CAACAAGATCACAGTGTCGT+TGG - chr8_2:66858248-66858267 None:intergenic 45.0%
! ACGCGCACAAGGATTTTATG+TGG - chr8_2:66858386-66858405 None:intergenic 45.0%
TTTCAGGAGTTCATCACTGC+TGG + chr8_2:66858602-66858621 Msa1263610:intron 45.0%
TTCAGGAGTTCATCACTGCT+GGG + chr8_2:66858603-66858622 Msa1263610:intron 45.0%
GGGGTGAATGCATATGAACT+TGG + chr8_2:66858623-66858642 Msa1263610:CDS 45.0%
CTTACTGACATGAAGGACTC+TGG + chr8_2:66858674-66858693 Msa1263610:CDS 45.0%
GAAGCAATGCAAAGTTACGG+TGG + chr8_2:66858707-66858726 Msa1263610:CDS 45.0%
CATCTAACAATAGTCGGTGG+GGG - chr8_2:66858934-66858953 None:intergenic 45.0%
CCATCTAACAATAGTCGGTG+GGG - chr8_2:66858935-66858954 None:intergenic 45.0%
GACCATCTAACAATAGTCGG+TGG - chr8_2:66858937-66858956 None:intergenic 45.0%
AGTCTCACTTCATCTGACAC+AGG - chr8_2:66858970-66858989 None:intergenic 45.0%
CAGATGAAGTGAGACTTCAG+TGG + chr8_2:66858974-66858993 Msa1263610:CDS 45.0%
GAAGTGAGACTTCAGTGGAA+AGG + chr8_2:66858979-66858998 Msa1263610:CDS 45.0%
ATTAGAGCAAACGGCAGTGA+TGG + chr8_2:66859157-66859176 Msa1263610:CDS 45.0%
TTAGAGCAAACGGCAGTGAT+GGG + chr8_2:66859158-66859177 Msa1263610:CDS 45.0%
ATTCGGCTAGCAACAACTGA+CGG - chr8_2:66859197-66859216 None:intergenic 45.0%
!! ATTAGTCTTCAGCACCCTTG+AGG + chr8_2:66859220-66859239 Msa1263610:CDS 45.0%
ATGTGAAACACAGCTCTGCA+TGG - chr8_2:66859437-66859456 None:intergenic 45.0%
TGCAGAGCTGTGTTTCACAT+TGG + chr8_2:66859437-66859456 Msa1263610:three_prime_UTR 45.0%
! TGTTTCACATTGGCTGGCTA+GGG + chr8_2:66859447-66859466 Msa1263610:three_prime_UTR 45.0%
ACCTGTTTGAGGGTAAGCAT+AGG - chr8_2:66857317-66857336 None:intergenic 45.0%
TGAAAAGCGACACAAATGCC+TGG + chr8_2:66857658-66857677 Msa1263610:CDS 45.0%
TGGCTATGTTGCGTGAAGAA+CGG - chr8_2:66857840-66857859 None:intergenic 45.0%
ACATAGCCATCACCTTGTTC+AGG + chr8_2:66857851-66857870 Msa1263610:CDS 45.0%
AGGAATTTCACTGATCGTGG+TGG + chr8_2:66857880-66857899 Msa1263610:CDS 45.0%
AATTTCACTGATCGTGGTGG+AGG + chr8_2:66857883-66857902 Msa1263610:CDS 45.0%
CAACAAGATCACAGTGTCGT+TGG - chr8_2:66858248-66858267 None:intergenic 45.0%
! ACGCGCACAAGGATTTTATG+TGG - chr8_2:66858386-66858405 None:intergenic 45.0%
TTTCAGGAGTTCATCACTGC+TGG + chr8_2:66858602-66858621 Msa1263610:intron 45.0%
TTCAGGAGTTCATCACTGCT+GGG + chr8_2:66858603-66858622 Msa1263610:intron 45.0%
GGGGTGAATGCATATGAACT+TGG + chr8_2:66858623-66858642 Msa1263610:CDS 45.0%
CTTACTGACATGAAGGACTC+TGG + chr8_2:66858674-66858693 Msa1263610:CDS 45.0%
GAAGCAATGCAAAGTTACGG+TGG + chr8_2:66858707-66858726 Msa1263610:CDS 45.0%
CATCTAACAATAGTCGGTGG+GGG - chr8_2:66858934-66858953 None:intergenic 45.0%
CCATCTAACAATAGTCGGTG+GGG - chr8_2:66858935-66858954 None:intergenic 45.0%
GACCATCTAACAATAGTCGG+TGG - chr8_2:66858937-66858956 None:intergenic 45.0%
AGTCTCACTTCATCTGACAC+AGG - chr8_2:66858970-66858989 None:intergenic 45.0%
CAGATGAAGTGAGACTTCAG+TGG + chr8_2:66858974-66858993 Msa1263610:CDS 45.0%
GAAGTGAGACTTCAGTGGAA+AGG + chr8_2:66858979-66858998 Msa1263610:CDS 45.0%
ATTAGAGCAAACGGCAGTGA+TGG + chr8_2:66859157-66859176 Msa1263610:CDS 45.0%
TTAGAGCAAACGGCAGTGAT+GGG + chr8_2:66859158-66859177 Msa1263610:CDS 45.0%
ATTCGGCTAGCAACAACTGA+CGG - chr8_2:66859197-66859216 None:intergenic 45.0%
!! ATTAGTCTTCAGCACCCTTG+AGG + chr8_2:66859220-66859239 Msa1263610:CDS 45.0%
ATGTGAAACACAGCTCTGCA+TGG - chr8_2:66859437-66859456 None:intergenic 45.0%
TGCAGAGCTGTGTTTCACAT+TGG + chr8_2:66859437-66859456 Msa1263610:three_prime_UTR 45.0%
! TGTTTCACATTGGCTGGCTA+GGG + chr8_2:66859447-66859466 Msa1263610:three_prime_UTR 45.0%
!!! TTTATTTTTATGAAAAAAAT+AGG - chr8_2:66859540-66859559 None:intergenic 5.0%
!!! TTTATTTTTATGAAAAAAAT+AGG - chr8_2:66859540-66859559 None:intergenic 5.0%
GCCTATGCTTACCCTCAAAC+AGG + chr8_2:66857313-66857332 Msa1263610:five_prime_UTR 50.0%
ACAGAAGAAGAACGCGCACA+AGG - chr8_2:66858397-66858416 None:intergenic 50.0%
TCAGGAGTTCATCACTGCTG+GGG + chr8_2:66858604-66858623 Msa1263610:intron 50.0%
! TGAACTTGGGTGCACTGATG+AGG + chr8_2:66858637-66858656 Msa1263610:CDS 50.0%
! GAACTTGGGTGCACTGATGA+GGG + chr8_2:66858638-66858657 Msa1263610:CDS 50.0%
! GGTGCACTGATGAGGGATTA+AGG + chr8_2:66858645-66858664 Msa1263610:CDS 50.0%
! CCCCACCGACTATTGTTAGA+TGG + chr8_2:66858932-66858951 Msa1263610:CDS 50.0%
GTCTATACTCTTGGCCACTG+TGG - chr8_2:66859378-66859397 None:intergenic 50.0%
GAGCTGTGTTTCACATTGGC+TGG + chr8_2:66859441-66859460 Msa1263610:three_prime_UTR 50.0%
! GTGTTTCACATTGGCTGGCT+AGG + chr8_2:66859446-66859465 Msa1263610:three_prime_UTR 50.0%
GCCTATGCTTACCCTCAAAC+AGG + chr8_2:66857313-66857332 Msa1263610:five_prime_UTR 50.0%
ACAGAAGAAGAACGCGCACA+AGG - chr8_2:66858397-66858416 None:intergenic 50.0%
TCAGGAGTTCATCACTGCTG+GGG + chr8_2:66858604-66858623 Msa1263610:intron 50.0%
! TGAACTTGGGTGCACTGATG+AGG + chr8_2:66858637-66858656 Msa1263610:CDS 50.0%
! GAACTTGGGTGCACTGATGA+GGG + chr8_2:66858638-66858657 Msa1263610:CDS 50.0%
! GGTGCACTGATGAGGGATTA+AGG + chr8_2:66858645-66858664 Msa1263610:CDS 50.0%
! CCCCACCGACTATTGTTAGA+TGG + chr8_2:66858932-66858951 Msa1263610:CDS 50.0%
GTCTATACTCTTGGCCACTG+TGG - chr8_2:66859378-66859397 None:intergenic 50.0%
GAGCTGTGTTTCACATTGGC+TGG + chr8_2:66859441-66859460 Msa1263610:three_prime_UTR 50.0%
! GTGTTTCACATTGGCTGGCT+AGG + chr8_2:66859446-66859465 Msa1263610:three_prime_UTR 50.0%
TGCAGGTAGTGAGTCCACAG+TGG + chr8_2:66859361-66859380 Msa1263610:intron 55.0%
TGCAGGTAGTGAGTCCACAG+TGG + chr8_2:66859361-66859380 Msa1263610:intron 55.0%
! CGGTGGGGGTGTACACAAGA+TGG - chr8_2:66858920-66858939 None:intergenic 60.0%
! CGGTGGGGGTGTACACAAGA+TGG - chr8_2:66858920-66858939 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 66857254 66859660 66857254 ID=Msa1263610;Name=Msa1263610
chr8_2 mRNA 66857254 66859660 66857254 ID=Msa1263610-mRNA-1;Parent=Msa1263610;Name=Msa1263610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=113|1|1|1|0.83|0.71|7|265|267
chr8_2 exon 66857254 66857334 66857254 ID=Msa1263610-mRNA-1:exon:21835;Parent=Msa1263610-mRNA-1
chr8_2 exon 66857435 66857679 66857435 ID=Msa1263610-mRNA-1:exon:21836;Parent=Msa1263610-mRNA-1
chr8_2 exon 66857796 66857918 66857796 ID=Msa1263610-mRNA-1:exon:21837;Parent=Msa1263610-mRNA-1
chr8_2 exon 66858608 66858766 66858608 ID=Msa1263610-mRNA-1:exon:21838;Parent=Msa1263610-mRNA-1
chr8_2 exon 66858877 66859049 66858877 ID=Msa1263610-mRNA-1:exon:21839;Parent=Msa1263610-mRNA-1
chr8_2 exon 66859136 66859241 66859136 ID=Msa1263610-mRNA-1:exon:21840;Parent=Msa1263610-mRNA-1
chr8_2 exon 66859366 66859660 66859366 ID=Msa1263610-mRNA-1:exon:21841;Parent=Msa1263610-mRNA-1
chr8_2 five_prime_UTR 66857254 66857334 66857254 ID=Msa1263610-mRNA-1:five_prime_utr;Parent=Msa1263610-mRNA-1
chr8_2 five_prime_UTR 66857435 66857466 66857435 ID=Msa1263610-mRNA-1:five_prime_utr;Parent=Msa1263610-mRNA-1
chr8_2 CDS 66857467 66857679 66857467 ID=Msa1263610-mRNA-1:cds;Parent=Msa1263610-mRNA-1
chr8_2 CDS 66857796 66857918 66857796 ID=Msa1263610-mRNA-1:cds;Parent=Msa1263610-mRNA-1
chr8_2 CDS 66858608 66858766 66858608 ID=Msa1263610-mRNA-1:cds;Parent=Msa1263610-mRNA-1
chr8_2 CDS 66858877 66859049 66858877 ID=Msa1263610-mRNA-1:cds;Parent=Msa1263610-mRNA-1
chr8_2 CDS 66859136 66859241 66859136 ID=Msa1263610-mRNA-1:cds;Parent=Msa1263610-mRNA-1
chr8_2 CDS 66859366 66859395 66859366 ID=Msa1263610-mRNA-1:cds;Parent=Msa1263610-mRNA-1
chr8_2 three_prime_UTR 66859396 66859660 66859396 ID=Msa1263610-mRNA-1:three_prime_utr;Parent=Msa1263610-mRNA-1
Gene Sequence

>Msa1263610

ATGTTAACGGTTTATGCTCCAAGAGCTATTCTAAACTTCCATTTATACCAAGACTCAACTTCAACACAACAAACATATTATTCATACAAGATCAATAATGTTAATTTCATAAATTTCAATTCTACTTTTCCTAAACCTTATGGAAGTCCTTGTAGTAACATATTTCTTAGTTCATCCTTCTCTTGGAATTGTGAAAAGCGACACAAATGCCTGCAGTGTGGATCACATGACTCAATGTCATCTAATGATGAGTACCGTTCTTCACGCAACATAGCCATCACCTTGTTCAGGAGATATAGGAATTTCACTGATCGTGGTGGAGGTGACAATCTAAAAGAGTTCATCACTGCTGGGGTGAATGCATATGAACTTGGGTGCACTGATGAGGGATTAAGGAAAGAGCTTACTGACATGAAGGACTCTGGCTTTGAAATTGAAGCAATGCAAAGTTACGGTGGGAGCACAAGCTTGAAATCTAAAATCATATCTAATGAGATTGATGAGTGCATTCTGTGGTTAAGCATTATATTCATCACCATCTTGTGTACACCCCCACCGACTATTGTTAGATGGTCATCAACAACTCCTGTGTCAGATGAAGTGAGACTTCAGTGGAAAGGATTTTGTGCTCTCATAGCAAATGCATATTTTATGAAGGGAATGGCTTGGCTTCCTGTAAAGACTCTTCAATTAGAGCAAACGGCAGTGATGGGTGAAGCTGAGACACCGTCAGTTGTTGCTAGCCGAATGCGATTAGTCTTCAGCACCCTTGAGGTAGTGAGTCCACAGTGGCCAAGAGTATAG

Protein sequence

>Msa1263610

MLTVYAPRAILNFHLYQDSTSTQQTYYSYKINNVNFINFNSTFPKPYGSPCSNIFLSSSFSWNCEKRHKCLQCGSHDSMSSNDEYRSSRNIAITLFRRYRNFTDRGGGDNLKEFITAGVNAYELGCTDEGLRKELTDMKDSGFEIEAMQSYGGSTSLKSKIISNEIDECILWLSIIFITILCTPPPTIVRWSSTTPVSDEVRLQWKGFCALIANAYFMKGMAWLPVKTLQLEQTAVMGEAETPSVVASRMRLVFSTLEVVSPQWPRV*