AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0729780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729780 MtrunA17_Chr5g0422881 97.789 588 13 0 1 588 1 588 0.0 1193
Msa0729780 MtrunA17_Chr7g0255621 57.517 572 235 3 20 585 20 589 0.0 688
Msa0729780 MtrunA17_Chr7g0255601 56.089 583 244 5 10 588 19 593 0.0 669
Msa0729780 MtrunA17_Chr7g0255611 55.240 563 243 4 10 567 19 577 0.0 655
Msa0729780 MtrunA17_Chr4g0005901 46.545 550 283 8 20 566 32 573 4.57e-172 500
Msa0729780 MtrunA17_Chr7g0241741 45.255 548 293 6 20 566 22 563 3.58e-169 493
Msa0729780 MtrunA17_Chr3g0104011 43.942 553 302 7 16 565 17 564 1.73e-168 491
Msa0729780 MtrunA17_Chr8g0375311 42.478 565 318 6 4 565 23 583 9.86e-165 482
Msa0729780 MtrunA17_Chr8g0375291 44.177 541 296 5 20 558 40 576 1.59e-161 474
Msa0729780 MtrunA17_Chr3g0142101 41.796 579 310 9 11 585 25 580 3.48e-156 460
Msa0729780 MtrunA17_Chr5g0415791 42.188 576 310 9 10 571 19 585 2.73e-151 448
Msa0729780 MtrunA17_Chr8g0375351 40.106 566 326 6 10 566 23 584 3.01e-151 447
Msa0729780 MtrunA17_Chr5g0399061 41.293 557 320 5 20 572 27 580 5.78e-151 446
Msa0729780 MtrunA17_Chr8g0375341 40.437 549 321 5 20 566 40 584 8.53e-150 444
Msa0729780 MtrunA17_Chr5g0399071 41.741 563 319 7 20 577 25 583 2.32e-146 435
Msa0729780 MtrunA17_Chr8g0375321 38.977 567 331 7 10 565 18 580 6.70e-144 428
Msa0729780 MtrunA17_Chr3g0142091 40.972 576 322 9 10 582 15 575 7.27e-144 428
Msa0729780 MtrunA17_Chr8g0375361 41.058 548 317 5 20 565 39 582 1.60e-142 425
Msa0729780 MtrunA17_Chr4g0056431 41.270 567 323 5 20 579 25 588 2.31e-142 425
Msa0729780 MtrunA17_Chr8g0375331 39.820 555 328 5 13 565 17 567 5.42e-142 423
Msa0729780 MtrunA17_Chr4g0059991 37.394 591 353 7 4 583 3 587 2.47e-140 420
Msa0729780 MtrunA17_Chr1g0187241 41.091 550 310 8 20 564 26 566 8.73e-139 416
Msa0729780 MtrunA17_Chr7g0261811 39.606 558 325 7 20 573 27 576 9.88e-139 416
Msa0729780 MtrunA17_Chr3g0133341 39.539 564 323 6 20 578 14 564 3.94e-135 405
Msa0729780 MtrunA17_Chr4g0059971 37.057 564 344 7 10 565 25 585 8.95e-135 405
Msa0729780 MtrunA17_Chr7g0261881 37.943 564 340 5 20 580 27 583 3.99e-133 401
Msa0729780 MtrunA17_Chr8g0390331 39.643 560 317 11 12 561 5 553 4.43e-131 395
Msa0729780 MtrunA17_Chr1g0166711 40.219 547 318 5 20 564 25 564 2.36e-130 394
Msa0729780 MtrunA17_Chr4g0063591 40.212 567 320 7 20 579 22 576 9.93e-130 392
Msa0729780 MtrunA17_Chr3g0112671 37.077 561 335 7 20 579 33 576 3.19e-129 390
Msa0729780 MtrunA17_Chr7g0261771 37.158 549 331 6 20 563 31 570 6.31e-128 388
Msa0729780 MtrunA17_Chr1g0166791 37.843 547 332 5 20 564 24 564 2.25e-127 386
Msa0729780 MtrunA17_Chr4g0003761 39.162 549 316 10 21 561 31 569 1.47e-126 384
Msa0729780 MtrunA17_Chr4g0059981 36.189 572 344 9 25 580 36 602 1.25e-125 382
Msa0729780 MtrunA17_Chr7g0240381 35.752 565 340 7 20 580 29 574 4.49e-125 380
Msa0729780 MtrunA17_Chr2g0331511 35.192 574 356 8 18 582 19 585 1.66e-124 380
Msa0729780 MtrunA17_Chr2g0331471 35.859 594 358 10 3 587 72 651 2.19e-124 382
Msa0729780 MtrunA17_Chr3g0114501 37.982 545 331 5 22 565 24 562 3.09e-124 378
Msa0729780 MtrunA17_Chr4g0008651 36.182 550 338 8 20 567 34 572 9.87e-124 377
Msa0729780 MtrunA17_Chr2g0331521 34.192 582 352 8 17 575 19 592 1.52e-123 376
Msa0729780 MtrunA17_Chr1g0147631 36.489 581 346 8 10 578 12 581 6.94e-123 375
Msa0729780 MtrunA17_Chr7g0261791 35.739 568 350 5 20 579 29 589 1.40e-122 374
Msa0729780 MtrunA17_Chr3g0112611 34.446 569 362 7 20 585 32 592 4.14e-122 373
Msa0729780 MtrunA17_Chr7g0261851 36.926 566 339 8 20 580 28 580 1.48e-121 372
Msa0729780 MtrunA17_Chr5g0439381 37.828 571 318 11 20 582 28 569 1.82e-121 371
Msa0729780 MtrunA17_Chr2g0331481 35.354 594 362 9 3 587 8 588 8.31e-121 371
Msa0729780 MtrunA17_Chr4g0014871 38.849 556 308 11 20 572 30 556 1.01e-120 368
Msa0729780 MtrunA17_Chr1g0157601 36.201 558 337 9 10 561 9 553 1.37e-120 368
Msa0729780 MtrunA17_Chr1g0166741 37.665 531 312 7 14 540 21 536 5.38e-120 367
Msa0729780 MtrunA17_Chr4g0014791 38.198 555 315 8 20 572 29 557 1.41e-119 365
Msa0729780 MtrunA17_Chr8g0353031 36.538 572 323 8 17 576 15 558 1.70e-119 365
Msa0729780 MtrunA17_Chr1g0166771 39.300 514 291 9 39 547 10 507 3.43e-119 363
Msa0729780 MtrunA17_Chr4g0060001 35.529 577 348 8 19 579 28 596 3.62e-119 365
Msa0729780 MtrunA17_Chr3g0077151 35.572 551 316 7 20 565 28 544 1.05e-117 360
Msa0729780 MtrunA17_Chr4g0014781 37.390 567 314 11 14 573 23 555 1.42e-117 360
Msa0729780 MtrunA17_Chr7g0214461 35.602 573 349 8 16 579 68 629 1.77e-117 362
Msa0729780 MtrunA17_Chr8g0362781 34.464 560 344 8 20 564 30 581 2.77e-117 360
Msa0729780 MtrunA17_Chr2g0276751 36.767 563 329 9 5 564 25 563 3.76e-117 360
Msa0729780 MtrunA17_Chr8g0362711 36.077 571 340 4 14 570 18 577 8.11e-117 358
Msa0729780 MtrunA17_Chr4g0014841 37.634 558 309 10 20 572 29 552 1.40e-116 357
Msa0729780 MtrunA17_Chr5g0415961 35.979 567 335 6 14 564 18 572 1.74e-116 358
Msa0729780 MtrunA17_Chr8g0362801 37.782 487 283 7 108 585 1 476 7.55e-116 353
Msa0729780 MtrunA17_Chr1g0213711 34.888 579 345 10 12 580 13 569 9.69e-116 356
Msa0729780 MtrunA17_Chr7g0217461 36.411 574 344 11 19 582 23 585 8.35e-115 353
Msa0729780 MtrunA17_Chr7g0218851 35.856 555 338 9 16 561 36 581 1.27e-114 354
Msa0729780 MtrunA17_Chr1g0157611 36.101 554 331 9 18 561 14 554 2.13e-114 352
Msa0729780 MtrunA17_Chr1g0193391 37.300 563 325 12 20 577 17 556 4.21e-114 352
Msa0729780 MtrunA17_Chr5g0400371 36.316 570 351 8 20 583 112 675 6.48e-114 354
Msa0729780 MtrunA17_Chr4g0014801 37.390 567 317 12 12 572 20 554 9.77e-114 350
Msa0729780 MtrunA17_Chr7g0240281 33.907 581 369 5 12 582 16 591 1.77e-113 350
Msa0729780 MtrunA17_Chr7g0240271 32.812 576 372 4 15 580 19 589 2.71e-113 350
Msa0729780 MtrunA17_Chr2g0284701 33.621 580 367 6 14 578 26 602 1.43e-112 348
Msa0729780 MtrunA17_Chr7g0214731 35.052 582 355 10 22 588 63 636 1.48e-112 349
Msa0729780 MtrunA17_Chr2g0331461 33.727 593 372 10 3 583 8 591 4.12e-111 346
Msa0729780 MtrunA17_Chr7g0261661 37.755 490 286 7 108 587 1 481 6.60e-110 338
Msa0729780 MtrunA17_Chr4g0054891 35.357 560 341 8 32 583 122 668 4.36e-109 341
Msa0729780 MtrunA17_Chr1g0177591 34.595 555 332 10 13 561 35 564 5.93e-109 338
Msa0729780 MtrunA17_Chr1g0166731 40.652 460 264 5 107 564 9 461 8.69e-108 332
Msa0729780 MtrunA17_Chr7g0271221 36.572 566 323 10 20 580 17 551 2.87e-107 334
Msa0729780 MtrunA17_Chr1g0157621 34.791 526 329 9 41 561 1 517 1.14e-102 322
Msa0729780 MtrunA17_Chr8g0379971 32.699 578 362 6 14 564 14 591 1.26e-101 320
Msa0729780 MtrunA17_Chr8g0379991 33.688 564 334 6 41 564 1 564 2.82e-101 318
Msa0729780 MtrunA17_Chr5g0415841 34.335 466 290 6 108 564 1 459 1.12e-97 305
Msa0729780 MtrunA17_Chr4g0011471 34.078 537 335 9 34 561 30 556 5.87e-95 301
Msa0729780 MtrunA17_Chr4g0014861 37.868 441 246 8 138 572 13 431 8.76e-95 297
Msa0729780 MtrunA17_Chr3g0082631 34.989 443 275 6 141 575 30 467 4.97e-93 293
Msa0729780 MtrunA17_Chr7g0240211 32.573 482 312 4 111 585 4 479 1.19e-92 293
Msa0729780 MtrunA17_Chr7g0240131 32.573 482 312 4 111 585 4 479 1.82e-92 292
Msa0729780 MtrunA17_Chr7g0240181 32.573 482 312 4 111 585 4 479 1.92e-92 292
Msa0729780 MtrunA17_Chr7g0235521 32.359 479 311 4 111 582 4 476 8.52e-92 291
Msa0729780 MtrunA17_Chr4g0069581 35.985 528 316 10 44 565 7 518 8.64e-91 290
Msa0729780 MtrunA17_Chr2g0325951 31.130 575 357 10 5 566 1 549 1.12e-90 290
Msa0729780 MtrunA17_Chr2g0325961 31.937 573 356 10 5 566 1 550 2.84e-89 286
Msa0729780 MtrunA17_Chr2g0326211 32.343 572 354 10 5 566 1 549 3.84e-89 286
Msa0729780 MtrunA17_Chr1g0177611 35.068 442 264 8 126 561 11 435 1.60e-86 276
Msa0729780 MtrunA17_Chr4g0011041 30.741 553 362 7 20 561 36 578 1.67e-86 280
Msa0729780 MtrunA17_Chr7g0261751 34.914 464 254 7 20 442 31 487 1.54e-85 276
Msa0729780 MtrunA17_Chr7g0240151 31.328 482 300 5 111 585 4 461 2.77e-84 270
Msa0729780 MtrunA17_Chr1g0177631 35.294 442 263 8 126 561 11 435 1.26e-81 263
Msa0729780 MtrunA17_Chr3g0142111 43.493 292 162 3 11 300 36 326 1.13e-80 257
Msa0729780 MtrunA17_Chr6g0451841 29.074 540 342 6 39 564 24 536 1.49e-72 242
Msa0729780 MtrunA17_Chr7g0261731 37.618 319 187 4 20 333 31 342 4.23e-69 227
Msa0729780 MtrunA17_Chr3g0142121 41.156 294 149 6 294 585 11 282 2.03e-65 215
Msa0729780 MtrunA17_Chr3g0112631 37.671 292 179 3 293 583 3 292 6.14e-64 211
Msa0729780 MtrunA17_Chr4g0060071 38.790 281 163 3 289 569 32 303 2.34e-58 197
Msa0729780 MtrunA17_Chr7g0234381 32.967 455 266 11 107 561 3 418 9.08e-56 194
Msa0729780 MtrunA17_Chr7g0234151 32.308 455 269 9 107 561 3 418 2.16e-55 193
Msa0729780 MtrunA17_Chr7g0234181 32.151 451 267 10 111 561 2 413 7.50e-54 188
Msa0729780 MtrunA17_Chr7g0261721 37.209 215 130 3 366 580 5 214 4.17e-43 154
Msa0729780 MtrunA17_Chr3g0112651 38.674 181 105 3 107 287 21 195 7.66e-35 130
Msa0729780 MtrunA17_Chr1g0147591 34.343 198 113 5 150 338 11 200 5.53e-33 125
Msa0729780 MtrunA17_Chr2g0326221 30.992 242 136 4 325 566 15 225 4.36e-30 118
Msa0729780 MtrunA17_Chr4g0060061 40.323 124 74 0 128 251 5 128 1.06e-26 105
Msa0729780 MtrunA17_Chr7g0261831 32.500 160 100 3 248 405 1 154 7.60e-19 85.5
Msa0729780 MtrunA17_Chr8g0362791 48.052 77 40 0 25 101 41 117 2.05e-17 79.3
Msa0729780 MtrunA17_Chr7g0261671 37.647 85 53 0 20 104 32 116 1.59e-15 73.2
Msa0729780 MtrunA17_Chr4g0014851 44.706 85 47 0 20 104 30 114 6.36e-15 72.8
Msa0729780 MtrunA17_Chr1g0147581 36.885 122 70 4 417 538 2 116 1.38e-14 70.5
Msa0729780 MtrunA17_Chr1g0166721 36.471 85 54 0 20 104 25 109 5.62e-14 69.7
Msa0729780 MtrunA17_Chr3g0112661 34.694 98 64 0 20 117 31 128 8.35e-14 68.9
Msa0729780 MtrunA17_Chr3g0082621 43.478 69 39 0 36 104 2 70 6.71e-13 64.7
Msa0729780 MtrunA17_Chr8g0382591 36.111 108 60 4 293 393 3 108 1.39e-12 65.5
Msa0729780 MtrunA17_Chr7g0240141 34.524 84 55 0 19 102 26 109 7.69e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729780 AT1G68570.1 76.450 569 129 2 13 576 12 580 0.0 896
Msa0729780 AT1G68570.2 77.106 546 122 1 34 576 5 550 0.0 873
Msa0729780 AT3G54140.1 45.255 548 293 5 20 565 22 564 2.88e-172 501
Msa0729780 AT3G54140.2 45.255 548 293 5 20 565 22 564 2.88e-172 501
Msa0729780 AT5G01180.2 45.652 552 292 6 20 569 23 568 1.99e-171 499
Msa0729780 AT5G01180.3 45.652 552 292 6 20 569 23 568 1.99e-171 499
Msa0729780 AT5G01180.1 45.652 552 292 6 20 569 23 568 1.99e-171 499
Msa0729780 AT2G02040.1 43.964 555 302 7 15 565 33 582 2.50e-161 473
Msa0729780 AT1G62200.1 43.590 546 292 6 19 559 49 583 3.77e-154 455
Msa0729780 AT1G69870.1 40.760 579 328 8 15 585 44 615 6.37e-150 446
Msa0729780 AT1G62200.2 41.391 575 292 7 19 559 49 612 1.80e-147 439
Msa0729780 AT1G62200.3 41.391 575 292 7 19 559 63 626 2.79e-147 439
Msa0729780 AT1G18880.1 39.041 584 335 10 10 578 4 581 1.31e-140 421
Msa0729780 AT2G26690.1 41.623 567 305 8 20 580 22 568 3.17e-139 417
Msa0729780 AT3G16180.1 38.860 579 330 10 20 583 21 590 1.52e-138 415
Msa0729780 AT1G52190.1 37.986 566 329 8 10 561 9 566 1.14e-137 414
Msa0729780 AT5G46050.1 39.388 556 327 5 12 564 16 564 2.14e-137 412
Msa0729780 AT5G46040.1 38.850 574 341 5 12 582 16 582 2.27e-137 412
Msa0729780 AT2G26690.2 41.924 551 294 8 36 580 5 535 7.48e-137 409
Msa0729780 AT2G02020.1 38.959 557 298 9 11 566 30 545 8.77e-136 407
Msa0729780 AT1G12110.1 38.986 572 335 7 20 584 25 589 1.17e-133 403
Msa0729780 AT2G26690.3 41.805 543 290 8 44 580 1 523 1.50e-133 400
Msa0729780 AT5G62680.1 36.256 593 356 10 7 581 27 615 3.97e-128 389
Msa0729780 AT3G47960.1 37.705 549 329 6 25 564 64 608 2.29e-127 388
Msa0729780 AT1G59740.1 37.523 541 326 4 22 559 41 572 2.07e-126 384
Msa0729780 AT3G21670.1 39.310 580 318 9 10 577 16 573 2.89e-124 379
Msa0729780 AT3G54450.1 35.739 568 335 7 20 582 10 552 1.71e-123 375
Msa0729780 AT1G27080.1 38.768 552 316 9 20 564 12 548 5.84e-123 375
Msa0729780 AT3G53960.1 36.823 554 332 9 20 567 35 576 2.52e-122 374
Msa0729780 AT1G33440.1 37.148 568 329 8 22 582 38 584 5.11e-121 370
Msa0729780 AT2G40460.1 37.132 544 329 6 22 564 24 555 7.83e-120 367
Msa0729780 AT5G13400.1 35.879 563 348 7 22 576 64 621 1.05e-119 368
Msa0729780 AT1G27040.1 37.343 557 327 7 14 563 19 560 2.79e-119 365
Msa0729780 AT1G27040.2 37.343 557 327 7 14 563 15 556 3.21e-119 365
Msa0729780 AT2G02020.2 37.294 547 281 11 20 566 40 524 3.37e-119 363
Msa0729780 AT1G69850.1 36.508 567 342 6 14 565 17 580 7.83e-119 364
Msa0729780 AT2G37900.1 36.000 550 334 7 20 567 36 569 5.23e-118 362
Msa0729780 AT1G22540.1 36.804 557 326 6 14 567 22 555 2.39e-116 357
Msa0729780 AT1G27040.3 37.803 537 312 7 34 563 7 528 1.95e-115 354
Msa0729780 AT5G28470.2 36.315 559 335 9 20 569 15 561 2.15e-115 355
Msa0729780 AT1G27080.2 39.306 519 293 9 53 564 3 506 4.79e-114 350
Msa0729780 AT5G28470.1 36.136 559 334 10 20 569 15 559 1.75e-112 347
Msa0729780 AT5G46050.2 39.869 459 267 4 108 564 1 452 2.42e-112 344
Msa0729780 AT1G32450.1 36.806 576 344 11 20 582 35 603 3.92e-111 345
Msa0729780 AT1G72140.1 34.035 570 332 9 6 565 18 553 1.22e-109 340
Msa0729780 AT1G72125.1 34.690 565 343 8 10 568 16 560 2.07e-109 339
Msa0729780 AT2G37900.2 36.040 505 305 7 65 567 2 490 6.41e-109 336
Msa0729780 AT1G69860.1 36.430 549 330 8 20 564 16 549 7.55e-108 335
Msa0729780 AT4G21680.1 37.943 564 330 10 12 563 17 572 8.91e-108 336
Msa0729780 AT1G22570.1 35.189 557 331 10 20 567 28 563 9.79e-107 332
Msa0729780 AT1G22570.2 35.490 541 319 10 36 567 7 526 1.82e-105 328
Msa0729780 AT1G72120.1 33.688 564 344 9 10 567 16 555 1.78e-104 326
Msa0729780 AT1G22550.1 33.993 556 338 8 20 567 28 562 3.38e-103 323
Msa0729780 AT3G45650.1 34.266 572 339 12 17 582 17 557 5.72e-103 322
Msa0729780 AT5G19640.1 33.514 555 342 11 23 574 60 590 8.01e-100 316
Msa0729780 AT3G45650.2 32.776 598 339 13 17 582 17 583 3.74e-97 308
Msa0729780 AT1G72130.1 32.804 567 323 9 8 565 17 534 4.76e-96 304
Msa0729780 AT3G45660.1 32.056 574 355 11 14 582 13 556 5.01e-96 304
Msa0729780 AT3G45660.3 32.056 574 355 11 14 582 13 556 5.01e-96 304
Msa0729780 AT3G45660.2 32.224 571 353 11 14 579 34 575 8.24e-96 305
Msa0729780 AT5G62730.1 35.116 561 325 11 20 567 54 588 4.29e-95 303
Msa0729780 AT3G45720.1 31.028 564 356 10 22 579 19 555 5.42e-95 301
Msa0729780 AT3G45710.1 31.615 582 355 12 7 578 6 554 1.85e-94 300
Msa0729780 AT5G62730.2 35.273 550 317 11 31 567 6 529 3.67e-93 296
Msa0729780 AT3G45680.1 33.037 563 342 14 22 579 20 552 2.94e-92 295
Msa0729780 AT3G45700.1 31.851 562 351 12 18 578 12 542 2.07e-89 287
Msa0729780 AT3G25260.1 33.579 542 311 13 22 561 21 515 1.02e-84 273
Msa0729780 AT3G45690.1 30.249 562 323 14 22 579 18 514 2.19e-81 265
Msa0729780 AT5G14940.1 28.130 583 367 13 16 580 3 551 7.36e-80 262
Msa0729780 AT1G72130.2 34.396 439 253 8 132 565 8 416 8.46e-80 258
Msa0729780 AT1G72130.3 34.396 439 253 8 132 565 8 416 8.46e-80 258
Msa0729780 AT3G25280.1 32.477 545 319 10 22 561 21 521 1.08e-78 258
Msa0729780 AT3G01350.1 28.120 569 347 12 39 577 24 560 5.60e-75 249
Msa0729780 AT2G38100.2 26.257 537 344 13 53 580 5 498 6.45e-46 169
Msa0729780 AT2G38100.1 26.257 537 344 13 53 580 21 514 1.42e-45 169
Msa0729780 AT2G38100.3 26.257 537 344 13 53 580 27 520 1.63e-45 169
Msa0729780 AT5G11570.1 33.852 257 155 5 306 561 234 476 3.53e-39 150
Msa0729780 AT5G11570.1 37.615 218 125 3 23 235 14 225 5.68e-35 138

Find 154 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTTAGCAGCTTTGGTTAA+TGG 0.197024 5_1:-37762569 None:intergenic
CTATATATTTAGGTATTTAA+AGG 0.229289 5_1:-37762012 None:intergenic
TCCTGATAATAATCTCAATA+AGG 0.230319 5_1:+37767877 Msa0729780:CDS
TTCCTTCCGGGTTCAAGTTC+CGG 0.272705 5_1:-37764650 None:intergenic
CATTAAATGACTATATATTT+AGG 0.276922 5_1:-37762022 None:intergenic
TAATCCCAATCTCAGTCTTT+TGG 0.281750 5_1:+37767645 Msa0729780:CDS
ATGGATCTGAATTTGCTTAT+AGG 0.288804 5_1:-37767984 None:intergenic
CTTTATGAGTTGCTTAGATT+TGG 0.289685 5_1:+37768091 Msa0729780:three_prime_UTR
CGGGTAAACGGGCTTCCTTC+CGG 0.293108 5_1:-37764663 None:intergenic
GAATTATATCAGTACACTTT+TGG 0.301867 5_1:+37767805 Msa0729780:CDS
GTTGGGTGGGGATGGGGCCT+TGG 0.309152 5_1:+37764567 Msa0729780:CDS
TAATCAGGATGGGACCAATA+TGG 0.312169 5_1:+37767279 Msa0729780:CDS
GGGTAAACGGGCTTCCTTCC+GGG 0.322366 5_1:-37764662 None:intergenic
TAGGTGTCTGTTCATAGTTT+TGG 0.324987 5_1:-37767363 None:intergenic
ATCTCAATAATTGCATTCAT+TGG 0.339608 5_1:+37764612 Msa0729780:CDS
GTGCCACAATATAGCCTTCA+TGG 0.348499 5_1:+37767671 Msa0729780:CDS
CAAATTCAGATCCATCATAA+AGG 0.350480 5_1:+37767992 Msa0729780:CDS
TATATATTTAGGTATTTAAA+GGG 0.356438 5_1:-37762011 None:intergenic
TGATATAACAATGTAGAGTT+AGG 0.358534 5_1:-37764738 None:intergenic
CAAAGCATACCAAAGATAAA+AGG 0.360146 5_1:-37762129 None:intergenic
AATGTAGAGTTAGGCACTTT+TGG 0.363597 5_1:-37764729 None:intergenic
CCCTTATTGAGATTATTATC+AGG 0.367316 5_1:-37767878 None:intergenic
GTGAGCTTACTTTAGCTTTG+TGG 0.367427 5_1:+37768203 Msa0729780:three_prime_UTR
CGAGTGGCTCGTAGATTAAC+TGG 0.370595 5_1:+37767479 Msa0729780:CDS
ATATGAAAACACCAGACTTA+TGG 0.370617 5_1:+37767216 Msa0729780:CDS
CCTGATAATAATCTCAATAA+GGG 0.370828 5_1:+37767878 Msa0729780:CDS
AATTACTATCTGGTAAATAA+TGG 0.372944 5_1:-37762690 None:intergenic
GTTGTCCTGTACTAGCTTCC+TGG 0.376790 5_1:-37764338 None:intergenic
GGTGAGAGTGTTAGCAGCTT+TGG 0.377076 5_1:-37762576 None:intergenic
TTGGTGGATATCGACTTTAC+CGG 0.381435 5_1:+37764631 Msa0729780:CDS
TTTATATTCAAGACAATGTT+GGG 0.387510 5_1:+37764550 Msa0729780:CDS
GACAATGTTGGGTGGGGATG+GGG 0.392224 5_1:+37764561 Msa0729780:CDS
ACAAGCCAAAAGACTGAGAT+TGG 0.397351 5_1:-37767650 None:intergenic
CGACCCTGCGTGGTAGCGTT+TGG 0.399578 5_1:+37764414 Msa0729780:CDS
ATGTACTGCAAAATGAATAC+AGG 0.404474 5_1:+37762042 Msa0729780:CDS
CTTGATGCATCAATAACATT+AGG 0.404501 5_1:+37764771 Msa0729780:CDS
AAATTCAGATCCATCATAAA+GGG 0.410856 5_1:+37767993 Msa0729780:CDS
TAAGACCACCACCTTGTAAA+GGG 0.412663 5_1:+37764304 Msa0729780:CDS
AACTGTTATCCCCTTTATGA+TGG 0.416802 5_1:-37768003 None:intergenic
AGGAATTGAAATCAATAATC+AGG 0.426766 5_1:+37767264 Msa0729780:CDS
TAATCTCAATAAGGGGAAGT+TGG 0.434640 5_1:+37767886 Msa0729780:CDS
GAGTTGCTTAGATTTGGATT+TGG 0.439025 5_1:+37768097 Msa0729780:three_prime_UTR
AAGTTTACTGCAGGGCCTAA+TGG 0.441477 5_1:+37767842 Msa0729780:CDS
AAGACAATGTTGGGTGGGGA+TGG 0.443676 5_1:+37764559 Msa0729780:CDS
AGACAATGTTGGGTGGGGAT+GGG 0.446260 5_1:+37764560 Msa0729780:CDS
GAGGGAGAAAGTGCCTTGTT+GGG 0.453743 5_1:-37767333 None:intergenic
ATGGGACCAATATGGGCATC+AGG 0.463348 5_1:+37767287 Msa0729780:CDS
CTACTAAGTGCACTCGGATC+GGG 0.463936 5_1:+37764384 Msa0729780:CDS
GCTAACACTCTCACCAACTT+TGG 0.469210 5_1:+37762584 Msa0729780:CDS
AGAATGCCTGATGCCCATAT+TGG 0.472545 5_1:-37767293 None:intergenic
GGAGGGAGAAAGTGCCTTGT+TGG 0.480436 5_1:-37767334 None:intergenic
TACTGAGAAGTTAGCAGTGG+TGG 0.482433 5_1:+37762499 Msa0729780:CDS
GTTTATATTCAAGACAATGT+TGG 0.483529 5_1:+37764549 Msa0729780:CDS
CATACCTCCTCCCCTTTACA+AGG 0.486223 5_1:-37764315 None:intergenic
ATTATTATCAGGAAGCCAAT+TGG 0.486251 5_1:-37767867 None:intergenic
AGCAAAAGAATCAGAAATGA+AGG 0.486370 5_1:-37762639 None:intergenic
AATCAGGATGGGACCAATAT+GGG 0.488017 5_1:+37767280 Msa0729780:CDS
GCTTGAAGTTCCACCAAAGT+TGG 0.488536 5_1:-37762597 None:intergenic
GCATGTGAAGCTGTGTTGTT+AGG 0.489463 5_1:-37762547 None:intergenic
GGAAGCCAATTGGTACCATT+AGG 0.489490 5_1:-37767857 None:intergenic
AGAATGGTAACCATACTAGA+AGG 0.492788 5_1:+37762082 Msa0729780:CDS
GTTGATAGCCTCCATAAGTC+TGG 0.494596 5_1:-37767227 None:intergenic
AATACCGACATGGACCCTGC+TGG 0.496239 5_1:-37767404 None:intergenic
TCAAGCTTGACACCATTGCT+TGG 0.502976 5_1:+37762614 Msa0729780:CDS
TCAATAATTGCATTCATTGG+TGG 0.503989 5_1:+37764615 Msa0729780:CDS
AACACTCTCACCAACTTTGG+TGG 0.505931 5_1:+37762587 Msa0729780:CDS
GATGCATCAATAACATTAGG+AGG 0.506441 5_1:+37764774 Msa0729780:CDS
ATAACCTTCCTTCACAGAAT+GGG 0.507387 5_1:+37767515 Msa0729780:CDS
ACAATATAGCCTTCATGGAA+TGG 0.508930 5_1:+37767676 Msa0729780:CDS
TTTGAAAAGATGGAGAAGAA+TGG 0.511164 5_1:+37762066 Msa0729780:CDS
GCAGTACTTGTCATACTCTC+AGG 0.513223 5_1:-37767749 None:intergenic
TTCCTTCACAGAATGGGCAT+TGG 0.514368 5_1:+37767521 Msa0729780:CDS
AAATCATTCGAAATCCCAGC+AGG 0.515566 5_1:+37767389 Msa0729780:CDS
CAGGGCCTAATGGTACCAAT+TGG 0.515633 5_1:+37767852 Msa0729780:CDS
TATTCAAGACAATGTTGGGT+GGG 0.515890 5_1:+37764554 Msa0729780:CDS
TTGGTACACAAGTTTACTGC+AGG 0.516278 5_1:+37767833 Msa0729780:CDS
TGTTAGGTAGCTTATCATGT+TGG 0.516760 5_1:-37762531 None:intergenic
ATTCAAGACAATGTTGGGTG+GGG 0.518324 5_1:+37764555 Msa0729780:CDS
CTATCATTATATAGTGTACA+AGG 0.522753 5_1:+37768171 Msa0729780:three_prime_UTR
TAAAGGGGAGGAGGTATGCC+AGG 0.523753 5_1:+37764320 Msa0729780:CDS
GAAACGAAAGAAGGTAGCTA+TGG 0.526415 5_1:+37767592 Msa0729780:CDS
TATAACCTTCCTTCACAGAA+TGG 0.529956 5_1:+37767514 Msa0729780:CDS
TTAAGACCACCACCTTGTAA+AGG 0.533663 5_1:+37764303 Msa0729780:CDS
TCCTCCCCTTTACAAGGTGG+TGG 0.535350 5_1:-37764309 None:intergenic
TTTGGACATCAATTTCTCTA+GGG 0.538439 5_1:+37767783 Msa0729780:CDS
TCTACTAAGTGCACTCGGAT+CGG 0.539272 5_1:+37764383 Msa0729780:CDS
TATGATTAGTTTGACTATGT+CGG 0.540452 5_1:+37764266 Msa0729780:CDS
ACTGAGAAGTTAGCAGTGGT+GGG 0.545206 5_1:+37762500 Msa0729780:CDS
CAAGCCAAAAGACTGAGATT+GGG 0.545384 5_1:-37767649 None:intergenic
GAGATAAACATTGCCAATGT+GGG 0.548246 5_1:-37764594 None:intergenic
TTGCCAATGTGGGGATTCCA+AGG 0.550082 5_1:-37764584 None:intergenic
CTGGTAAATAATGGAAGCAA+CGG 0.552887 5_1:-37762681 None:intergenic
CTAAGTGCACTCGGATCGGG+TGG 0.559356 5_1:+37764387 Msa0729780:CDS
ATTGAAATCAATAATCAGGA+TGG 0.565434 5_1:+37767268 Msa0729780:CDS
ATACCGACATGGACCCTGCT+GGG 0.565654 5_1:-37767403 None:intergenic
CGTTGAAATGAAACGAAAGA+AGG 0.566796 5_1:+37767583 Msa0729780:CDS
ATCTGATTCATCGAATTGAT+CGG 0.567827 5_1:-37764439 None:intergenic
TTGAAATCAATAATCAGGAT+GGG 0.570095 5_1:+37767269 Msa0729780:CDS
CAGTTAATCTACGAGCCACT+CGG 0.573812 5_1:-37767478 None:intergenic
CAAGGTGGTGGTCTTAATTG+CGG 0.575918 5_1:-37764297 None:intergenic
TGAGATAAACATTGCCAATG+TGG 0.576745 5_1:-37764595 None:intergenic
GATTAAGACACGGTCATAGA+GGG 0.581651 5_1:-37767456 None:intergenic
GGTGAAGAGCATTGTGAGGA+TGG 0.581690 5_1:-37767429 None:intergenic
GGATTAAGACACGGTCATAG+AGG 0.582064 5_1:-37767457 None:intergenic
GCTCCAAACGCTACCACGCA+GGG 0.582688 5_1:-37764417 None:intergenic
ACTTTACCGGAACTTGAACC+CGG 0.583922 5_1:+37764644 Msa0729780:CDS
GTATTTAAAGGGAAAGCTTG+TGG 0.586359 5_1:-37762000 None:intergenic
GAAATGAAGGCACCAAGCAA+TGG 0.587594 5_1:-37762626 None:intergenic
GGCTCCAAACGCTACCACGC+AGG 0.589118 5_1:-37764418 None:intergenic
GTTTACCCGACTTGTAAAAG+TGG 0.592261 5_1:+37764677 Msa0729780:CDS
GTATGCCAGGAAGCTAGTAC+AGG 0.596922 5_1:+37764333 Msa0729780:CDS
ACCACCTTGTAAAGGGGAGG+AGG 0.597387 5_1:+37764311 Msa0729780:CDS
CAAGGCAGCAATAGTGACAG+AGG 0.600878 5_1:+37767187 Msa0729780:CDS
AAGCTTCAGCCATTCCATGA+AGG 0.601801 5_1:-37767685 None:intergenic
TACCGGAACTTGAACCCGGA+AGG 0.608598 5_1:+37764648 Msa0729780:CDS
AACCAATGCCCATTCTGTGA+AGG 0.612186 5_1:-37767523 None:intergenic
CCGACTTGTAAAAGTGGGTG+TGG 0.612323 5_1:+37764683 Msa0729780:CDS
CTGATAATAATCTCAATAAG+GGG 0.613450 5_1:+37767879 Msa0729780:CDS
GGGCCTTGGAATCCCCACAT+TGG 0.619404 5_1:+37764581 Msa0729780:CDS
TTTACCCGACTTGTAAAAGT+GGG 0.621054 5_1:+37764678 Msa0729780:CDS
AGATAAACATTGCCAATGTG+GGG 0.622888 5_1:-37764593 None:intergenic
AATGCCCATTCTGTGAAGGA+AGG 0.627203 5_1:-37767519 None:intergenic
TGAAAACACCAGACTTATGG+AGG 0.627460 5_1:+37767219 Msa0729780:CDS
GAGTATGACAAGTACTGCAA+TGG 0.633328 5_1:+37767754 Msa0729780:CDS
ATATTCAAGACAATGTTGGG+TGG 0.637995 5_1:+37764553 Msa0729780:CDS
ACCACCACCTTGTAAAGGGG+AGG 0.640217 5_1:+37764308 Msa0729780:CDS
AAGACCACCACCTTGTAAAG+GGG 0.641620 5_1:+37764305 Msa0729780:CDS
GCTATCAACTGTTCACAGAG+TGG 0.641735 5_1:+37767241 Msa0729780:CDS
TGCAGTAAACTTGTGTACCA+AGG 0.643581 5_1:-37767831 None:intergenic
CAAACGCTACCACGCAGGGT+CGG 0.644069 5_1:-37764413 None:intergenic
ATTCCATGAAGGCTATATTG+TGG 0.645084 5_1:-37767674 None:intergenic
ATGCATCAATAACATTAGGA+GGG 0.645194 5_1:+37764775 Msa0729780:CDS
TTCAACGAATCCAGCAACGA+AGG 0.646183 5_1:-37767567 None:intergenic
GACACGGTCATAGAGGGCAA+TGG 0.646638 5_1:-37767450 None:intergenic
AATTCAGATCCATCATAAAG+GGG 0.650003 5_1:+37767994 Msa0729780:CDS
ACCTCCTCCCCTTTACAAGG+TGG 0.650601 5_1:-37764312 None:intergenic
TCACTTCTACTAAGTGCACT+CGG 0.655705 5_1:+37764378 Msa0729780:CDS
ATCAACTGTTCACAGAGTGG+AGG 0.656720 5_1:+37767244 Msa0729780:CDS
ATCACAGCATATGCCCAACA+AGG 0.657237 5_1:+37767320 Msa0729780:CDS
TCACATAACTTCTACAAGTG+TGG 0.657442 5_1:-37768123 None:intergenic
GGGTGGGATCCGACCCTGCG+TGG 0.657844 5_1:+37764404 Msa0729780:CDS
AGATTAACTGGACTCGACCG+TGG 0.660577 5_1:+37767491 Msa0729780:CDS
CATGGGAACAGCTATACTTG+TGG 0.666916 5_1:+37764512 Msa0729780:CDS
TGGTACACAAGTTTACTGCA+GGG 0.672147 5_1:+37767834 Msa0729780:CDS
AAGAAGGTAGCTATGGAACA+CGG 0.675230 5_1:+37767599 Msa0729780:CDS
TAAGTGCACTCGGATCGGGT+GGG 0.676292 5_1:+37764388 Msa0729780:CDS
TGACCGTGTCTTAATCCGAG+TGG 0.677752 5_1:+37767463 Msa0729780:CDS
AATCATTCGAAATCCCAGCA+GGG 0.685236 5_1:+37767390 Msa0729780:CDS
AATCCCAGCAGGGTCCATGT+CGG 0.687979 5_1:+37767400 Msa0729780:CDS
GGTTACTGAGAAGTTAGCAG+TGG 0.712724 5_1:+37762496 Msa0729780:CDS
CAATGGTGAAGAGCATTGTG+AGG 0.730767 5_1:-37767433 None:intergenic
GAGGATGGTGAATACCGACA+TGG 0.733860 5_1:-37767414 None:intergenic
GAGCCACTCGGATTAAGACA+CGG 0.745498 5_1:-37767466 None:intergenic
TGTGAAGGAAGGTTATACCA+CGG 0.749506 5_1:-37767508 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTTAGGTATTTAAA+GGG - chr5_1:37762014-37762033 None:intergenic 10.0%
!!! GTTTAATATAAAATTCATTT+TGG - chr5_1:37762999-37763018 None:intergenic 10.0%
!!! ACTTTTTTTTTTTTTTTTTG+AGG + chr5_1:37763583-37763602 Msa0729780:intron 10.0%
!!! TTATTAATTACATTGTTTTT+TGG - chr5_1:37763781-37763800 None:intergenic 10.0%
!! AACATACATATTAAAAAAAA+TGG - chr5_1:37764144-37764163 None:intergenic 10.0%
!! AATAAAAAAAACTTTCAATA+AGG - chr5_1:37764207-37764226 None:intergenic 10.0%
!!! ATTTTGCTTATATTTTAAAA+CGG - chr5_1:37764917-37764936 None:intergenic 10.0%
!!! ATAAGTAAAATTTACTTTTT+AGG - chr5_1:37765015-37765034 None:intergenic 10.0%
!! TAATATATTTATTTAAGTAG+AGG + chr5_1:37765673-37765692 Msa0729780:intron 10.0%
!!! TTGTTTTTTTTTTACTAAAT+AGG + chr5_1:37765724-37765743 Msa0729780:intron 10.0%
!! TATAATAATGATGATTAATT+TGG - chr5_1:37765911-37765930 None:intergenic 10.0%
!!! TTACTTGTATTTAAAATTAA+GGG + chr5_1:37766580-37766599 Msa0729780:intron 10.0%
!! TATATCTATACTATATATAA+AGG - chr5_1:37766657-37766676 None:intergenic 10.0%
!!! AGTTTAAGTAAAATTTTATA+AGG + chr5_1:37768060-37768079 Msa0729780:exon 10.0%
!! CTATATATTTAGGTATTTAA+AGG - chr5_1:37762015-37762034 None:intergenic 15.0%
!! CATTAAATGACTATATATTT+AGG - chr5_1:37762025-37762044 None:intergenic 15.0%
!!! TTTTAAATTATTAGCTTTGT+CGG + chr5_1:37762321-37762340 Msa0729780:intron 15.0%
!!! AAATGAATAGTTTTTTTTCA+TGG + chr5_1:37763353-37763372 Msa0729780:intron 15.0%
!! GAATTGTATTATATATGTAA+AGG - chr5_1:37763619-37763638 None:intergenic 15.0%
!! TATATTATTATATACGTAGT+AGG - chr5_1:37763718-37763737 None:intergenic 15.0%
!!! TATTATTTTTTTTTTTGGCT+AGG - chr5_1:37763745-37763764 None:intergenic 15.0%
!!! GACAGTATTATTTTTTTTTT+TGG - chr5_1:37763750-37763769 None:intergenic 15.0%
!!! TTCAATGTCTAAAATATTTT+TGG - chr5_1:37763879-37763898 None:intergenic 15.0%
!!! TTTTGTGATTTTTAAAAATC+AGG + chr5_1:37764242-37764261 Msa0729780:intron 15.0%
!!! TTTGTGATTTTTAAAAATCA+GGG + chr5_1:37764243-37764262 Msa0729780:intron 15.0%
!! GTATTAAAAAACATTATGAA+AGG - chr5_1:37764869-37764888 None:intergenic 15.0%
!!! ATAAGCAAAATTTACTTTTT+AGG + chr5_1:37764926-37764945 Msa0729780:intron 15.0%
!! CATTCATTTAATAATGTATT+TGG - chr5_1:37764990-37765009 None:intergenic 15.0%
!! TTCAATAATTGAGTTAATAA+AGG + chr5_1:37765115-37765134 Msa0729780:intron 15.0%
!! TCATATCAAATCTTTAAATT+CGG + chr5_1:37765345-37765364 Msa0729780:intron 15.0%
!! ACTAATCATTACTAAAAATA+TGG + chr5_1:37766135-37766154 Msa0729780:intron 15.0%
!! TTATATATACTAGCAAAAAA+AGG + chr5_1:37766250-37766269 Msa0729780:intron 15.0%
!! TATATATACTAGCAAAAAAA+GGG + chr5_1:37766251-37766270 Msa0729780:intron 15.0%
!!! AGTTTGTTATACTTTTTAAA+TGG + chr5_1:37766470-37766489 Msa0729780:intron 15.0%
!!! TTATACTTTTTAAATGGTAA+TGG + chr5_1:37766476-37766495 Msa0729780:intron 15.0%
!!! GTTACTTGTATTTAAAATTA+AGG + chr5_1:37766579-37766598 Msa0729780:intron 15.0%
!!! TCTTTTATAATTTTCTGATT+TGG - chr5_1:37766785-37766804 None:intergenic 15.0%
!! AAGTTTAATTGAAAAAATAG+AGG - chr5_1:37767083-37767102 None:intergenic 15.0%
!! TATTACAATAACTTTAAACA+AGG - chr5_1:37767116-37767135 None:intergenic 15.0%
!!! ATTTTTAATTGATGGTTTTT+AGG + chr5_1:37768264-37768283 Msa0729780:three_prime_UTR 15.0%
!!! TTTTTAATTGATGGTTTTTA+GGG + chr5_1:37768265-37768284 Msa0729780:three_prime_UTR 15.0%
!! AATTTAATACCAAAGAGTTA+GGG - chr5_1:37762158-37762177 None:intergenic 20.0%
!! AAATTTAATACCAAAGAGTT+AGG - chr5_1:37762159-37762178 None:intergenic 20.0%
!! AATTACTATCTGGTAAATAA+TGG - chr5_1:37762693-37762712 None:intergenic 20.0%
!!! ATTCAAATATTGCTTTTTCT+TGG - chr5_1:37763054-37763073 None:intergenic 20.0%
!! AGAAAAAGCAATATTTGAAT+TGG + chr5_1:37763054-37763073 Msa0729780:intron 20.0%
!!! TGAAATGGATTTTTTATTTG+AGG + chr5_1:37763127-37763146 Msa0729780:intron 20.0%
!!! GAAATGGATTTTTTATTTGA+GGG + chr5_1:37763128-37763147 Msa0729780:intron 20.0%
!!! AAATGGATTTTTTATTTGAG+GGG + chr5_1:37763129-37763148 Msa0729780:intron 20.0%
!!! AATATTTTATGAGAGTACAT+GGG - chr5_1:37763182-37763201 None:intergenic 20.0%
!!! AAATATTTTATGAGAGTACA+TGG - chr5_1:37763183-37763202 None:intergenic 20.0%
!!! AACTATTCATTTTCATGAAT+GGG - chr5_1:37763345-37763364 None:intergenic 20.0%
!!! AAACTATTCATTTTCATGAA+TGG - chr5_1:37763346-37763365 None:intergenic 20.0%
!! AAAATGACAATCAAGATTTA+CGG - chr5_1:37763406-37763425 None:intergenic 20.0%
!! AAAAAAAAAAAAAGTAAGGG+TGG - chr5_1:37763578-37763597 None:intergenic 20.0%
!! TATTATATATGTAAAGGTGA+AGG - chr5_1:37763613-37763632 None:intergenic 20.0%
!! GATTATAACTCAATTAATGA+TGG - chr5_1:37763646-37763665 None:intergenic 20.0%
!! ATTAATTGAGTTATAATCAC+AGG + chr5_1:37763648-37763667 Msa0729780:intron 20.0%
!! GATTAATCATCATTAAATAG+TGG - chr5_1:37764185-37764204 None:intergenic 20.0%
!! TTTATATTCAAGACAATGTT+GGG + chr5_1:37764550-37764569 Msa0729780:CDS 20.0%
!! CATTCATTTAATGATGTATT+TGG + chr5_1:37764951-37764970 Msa0729780:intron 20.0%
!! TGGAAGATATTAAAAAATTG+AGG + chr5_1:37765156-37765175 Msa0729780:intron 20.0%
!! TAAGCTTAAATTACTCATAA+AGG + chr5_1:37765590-37765609 Msa0729780:intron 20.0%
!!! ACTCTTATTTTGGAAAAAAT+AGG + chr5_1:37766073-37766092 Msa0729780:intron 20.0%
!!! TTATTTTGGAAAAAATAGGT+TGG + chr5_1:37766077-37766096 Msa0729780:intron 20.0%
!!! TAGTAATGATTAGTTTTTGT+CGG - chr5_1:37766129-37766148 None:intergenic 20.0%
!!! AAGAGATTTAAAGATGATTT+TGG - chr5_1:37766232-37766251 None:intergenic 20.0%
!!! AAGTTGTTTAAGAGTATAAT+TGG + chr5_1:37766413-37766432 Msa0729780:intron 20.0%
!!! TTAATACAGATTTTTAGACA+AGG + chr5_1:37767169-37767188 Msa0729780:intron 20.0%
! TTTAGTGTAATTACAAGTGT+CGG - chr5_1:37762287-37762306 None:intergenic 25.0%
! AGAAGAAGAAAATTACTATC+TGG - chr5_1:37762703-37762722 None:intergenic 25.0%
! AAACACTAGAATTGATGAAA+TGG + chr5_1:37763112-37763131 Msa0729780:intron 25.0%
! GTGATTAGGAAAAAACAAAA+GGG - chr5_1:37763503-37763522 None:intergenic 25.0%
! AGTGATTAGGAAAAAACAAA+AGG - chr5_1:37763504-37763523 None:intergenic 25.0%
! CAAGTGAAATTATAGTGATT+AGG - chr5_1:37763517-37763536 None:intergenic 25.0%
!! TTGTTTAAGATGAATAAGTG+AGG + chr5_1:37763534-37763553 Msa0729780:intron 25.0%
! TAACTCAATTAATGATGGTA+AGG - chr5_1:37763641-37763660 None:intergenic 25.0%
! CAAACTTAACTAAAACTTAG+AGG - chr5_1:37763695-37763714 None:intergenic 25.0%
! TATAGTAAACCTAATCTTTG+AGG - chr5_1:37763904-37763923 None:intergenic 25.0%
! ATTAAACATATGTCATGTCA+TGG + chr5_1:37764074-37764093 Msa0729780:intron 25.0%
! TAATCATCATTAAATAGTGG+TGG - chr5_1:37764182-37764201 None:intergenic 25.0%
!!! TATGATTAGTTTGACTATGT+CGG + chr5_1:37764266-37764285 Msa0729780:CDS 25.0%
!! TAATTGGTACTATTTTGTCA+TGG + chr5_1:37764494-37764513 Msa0729780:CDS 25.0%
!! AATTGGTACTATTTTGTCAT+GGG + chr5_1:37764495-37764514 Msa0729780:CDS 25.0%
! GTTTATATTCAAGACAATGT+TGG + chr5_1:37764549-37764568 Msa0729780:CDS 25.0%
! ATCTCAATAATTGCATTCAT+TGG + chr5_1:37764612-37764631 Msa0729780:CDS 25.0%
! TGATATAACAATGTAGAGTT+AGG - chr5_1:37764741-37764760 None:intergenic 25.0%
! TTAAAACGGATGAAATATCA+AGG - chr5_1:37764903-37764922 None:intergenic 25.0%
!! GATGTATTTGGTTCATAATA+TGG + chr5_1:37764963-37764982 Msa0729780:intron 25.0%
!!! TGATGATGTGCATTATTTTT+TGG - chr5_1:37765082-37765101 None:intergenic 25.0%
!! CAAATTCGAATTCTTTTCTT+AGG - chr5_1:37765211-37765230 None:intergenic 25.0%
!! AGATTTAAAGATGATTTTGG+TGG - chr5_1:37766229-37766248 None:intergenic 25.0%
!! ATTTTTAAACGTTAGCACAA+CGG - chr5_1:37766287-37766306 None:intergenic 25.0%
! AACTGTTTCCTTTAATCTTA+GGG - chr5_1:37766982-37767001 None:intergenic 25.0%
! TAACTGTTTCCTTTAATCTT+AGG - chr5_1:37766983-37767002 None:intergenic 25.0%
! AGGAATTGAAATCAATAATC+AGG + chr5_1:37767264-37767283 Msa0729780:CDS 25.0%
! ATTGAAATCAATAATCAGGA+TGG + chr5_1:37767268-37767287 Msa0729780:CDS 25.0%
! TTGAAATCAATAATCAGGAT+GGG + chr5_1:37767269-37767288 Msa0729780:CDS 25.0%
!! GAATTATATCAGTACACTTT+TGG + chr5_1:37767805-37767824 Msa0729780:CDS 25.0%
! TCCTGATAATAATCTCAATA+AGG + chr5_1:37767877-37767896 Msa0729780:CDS 25.0%
! CCTGATAATAATCTCAATAA+GGG + chr5_1:37767878-37767897 Msa0729780:CDS 25.0%
! CTGATAATAATCTCAATAAG+GGG + chr5_1:37767879-37767898 Msa0729780:CDS 25.0%
! AAATTCAGATCCATCATAAA+GGG + chr5_1:37767993-37768012 Msa0729780:CDS 25.0%
! CTATCATTATATAGTGTACA+AGG + chr5_1:37768171-37768190 Msa0729780:three_prime_UTR 25.0%
!!! CTGTGTTCATTTTTAATTGA+TGG + chr5_1:37768256-37768275 Msa0729780:three_prime_UTR 25.0%
ATGTACTGCAAAATGAATAC+AGG + chr5_1:37762042-37762061 Msa0729780:CDS 30.0%
!!! GAATACAGGTTTTGAAAAGA+TGG + chr5_1:37762056-37762075 Msa0729780:CDS 30.0%
TTTGAAAAGATGGAGAAGAA+TGG + chr5_1:37762066-37762085 Msa0729780:CDS 30.0%
AACCATACTAGAAGGAAAAA+AGG + chr5_1:37762090-37762109 Msa0729780:CDS 30.0%
ATACTAGAAGGAAAAAAGGA+GGG + chr5_1:37762094-37762113 Msa0729780:CDS 30.0%
CAAAGCATACCAAAGATAAA+AGG - chr5_1:37762132-37762151 None:intergenic 30.0%
TACTTCAATGTTATGAAGCA+CGG + chr5_1:37762202-37762221 Msa0729780:intron 30.0%
TCATAGCTTCAATGTATACA+TGG + chr5_1:37762392-37762411 Msa0729780:intron 30.0%
!!! GTATACATGGTTTTGAATCA+TGG + chr5_1:37762405-37762424 Msa0729780:intron 30.0%
AGCAAAAGAATCAGAAATGA+AGG - chr5_1:37762642-37762661 None:intergenic 30.0%
! TTCATTTCTGATTCTTTTGC+TGG + chr5_1:37762641-37762660 Msa0729780:CDS 30.0%
!! AATTGGTGTTATAACCTAGT+TGG + chr5_1:37763071-37763090 Msa0729780:intron 30.0%
AAAAAAAAAAGTAAGGGTGG+TGG - chr5_1:37763575-37763594 None:intergenic 30.0%
!!! ACATTGTTTTTTGGAAAGCT+AGG - chr5_1:37763772-37763791 None:intergenic 30.0%
!! ATTAAATAGTGGTGGATTCA+AGG - chr5_1:37764174-37764193 None:intergenic 30.0%
ATCTGATTCATCGAATTGAT+CGG - chr5_1:37764442-37764461 None:intergenic 30.0%
!!! GGACATGGACTTATTTTAAT+TGG + chr5_1:37764478-37764497 Msa0729780:CDS 30.0%
TCAATAATTGCATTCATTGG+TGG + chr5_1:37764615-37764634 Msa0729780:CDS 30.0%
CTTGATGCATCAATAACATT+AGG + chr5_1:37764771-37764790 Msa0729780:CDS 30.0%
ATGCATCAATAACATTAGGA+GGG + chr5_1:37764775-37764794 Msa0729780:CDS 30.0%
ATTGAGTTAATAAAGGCCTT+AGG + chr5_1:37765122-37765141 Msa0729780:intron 30.0%
AGTGATTAATTGTGCAAAGT+AGG + chr5_1:37765180-37765199 Msa0729780:intron 30.0%
! TTCGAATTCTTTTCTTAGGA+GGG - chr5_1:37765207-37765226 None:intergenic 30.0%
! ATTCGAATTCTTTTCTTAGG+AGG - chr5_1:37765208-37765227 None:intergenic 30.0%
!! GAGGCTTTATTTATAACTTG+TGG + chr5_1:37765692-37765711 Msa0729780:intron 30.0%
ATATATTGTCCAAGCGATAA+AGG + chr5_1:37766009-37766028 Msa0729780:intron 30.0%
!! TCTGTCTTTGACTCTTATTT+TGG + chr5_1:37766063-37766082 Msa0729780:intron 30.0%
! TTTTTAAACGTTAGCACAAC+GGG - chr5_1:37766286-37766305 None:intergenic 30.0%
TGATTAAACATGCTAAGCTA+TGG + chr5_1:37766924-37766943 Msa0729780:intron 30.0%
GAGTTAGTTATGATCACATA+GGG - chr5_1:37766959-37766978 None:intergenic 30.0%
ACTGTTTCCTTTAATCTTAG+GGG - chr5_1:37766981-37767000 None:intergenic 30.0%
! AGGTTATATTGAGTTGTAAC+TGG - chr5_1:37767009-37767028 None:intergenic 30.0%
ATATGAAAACACCAGACTTA+TGG + chr5_1:37767216-37767235 Msa0729780:CDS 30.0%
! GGATTTCGAATGATTTTGTT+AGG - chr5_1:37767385-37767404 None:intergenic 30.0%
! CTGAAGCTTTTATGTCAATA+GGG + chr5_1:37767699-37767718 Msa0729780:CDS 30.0%
!! TTTTATGTCAATAGGGCATT+TGG + chr5_1:37767706-37767725 Msa0729780:CDS 30.0%
! TTTTGGACATCAATTTCTCT+AGG + chr5_1:37767782-37767801 Msa0729780:CDS 30.0%
TTTGGACATCAATTTCTCTA+GGG + chr5_1:37767783-37767802 Msa0729780:CDS 30.0%
ATTATTATCAGGAAGCCAAT+TGG - chr5_1:37767870-37767889 None:intergenic 30.0%
CCCTTATTGAGATTATTATC+AGG - chr5_1:37767881-37767900 None:intergenic 30.0%
! ATGGATCTGAATTTGCTTAT+AGG - chr5_1:37767987-37768006 None:intergenic 30.0%
CAAATTCAGATCCATCATAA+AGG + chr5_1:37767992-37768011 Msa0729780:CDS 30.0%
AATTCAGATCCATCATAAAG+GGG + chr5_1:37767994-37768013 Msa0729780:CDS 30.0%
CTTTATGAGTTGCTTAGATT+TGG + chr5_1:37768091-37768110 Msa0729780:three_prime_UTR 30.0%
GTATTTAAAGGGAAAGCTTG+TGG - chr5_1:37762003-37762022 None:intergenic 35.0%
AGAATGGTAACCATACTAGA+AGG + chr5_1:37762082-37762101 Msa0729780:CDS 35.0%
!!! CTCCTTTTTTCCTTCTAGTA+TGG - chr5_1:37762095-37762114 None:intergenic 35.0%
CATACTAGAAGGAAAAAAGG+AGG + chr5_1:37762093-37762112 Msa0729780:CDS 35.0%
! GCAACAATGCCTTTTATCTT+TGG + chr5_1:37762120-37762139 Msa0729780:CDS 35.0%
TACATTGAAGCTATGAAGCA+CGG - chr5_1:37762388-37762407 None:intergenic 35.0%
!!! TTTTGTTGTTGCAGCTAATG+AGG + chr5_1:37762475-37762494 Msa0729780:intron 35.0%
TGTTAGGTAGCTTATCATGT+TGG - chr5_1:37762534-37762553 None:intergenic 35.0%
! CTGGTAAATAATGGAAGCAA+CGG - chr5_1:37762684-37762703 None:intergenic 35.0%
TGTAACTCATGTTGTACTCA+TGG + chr5_1:37762904-37762923 Msa0729780:intron 35.0%
GTAACTCATGTTGTACTCAT+GGG + chr5_1:37762905-37762924 Msa0729780:intron 35.0%
TAACTCATGTTGTACTCATG+GGG + chr5_1:37762906-37762925 Msa0729780:intron 35.0%
ATTGCTGTAAACAACCAACT+AGG - chr5_1:37763088-37763107 None:intergenic 35.0%
TTGAGGGGATCTTGATTAAA+TGG + chr5_1:37763144-37763163 Msa0729780:intron 35.0%
AGTTATAATCACAGGAACCT+TGG + chr5_1:37763656-37763675 Msa0729780:intron 35.0%
GAGGTAAAAAGATTGAACCA+AGG - chr5_1:37763676-37763695 None:intergenic 35.0%
GACACTAGAATTAAAGACAG+TGG + chr5_1:37763834-37763853 Msa0729780:intron 35.0%
CATTGAAGACCTCAAAGATT+AGG + chr5_1:37763892-37763911 Msa0729780:intron 35.0%
TGTACTCATGTAGATGTTTG+AGG + chr5_1:37764029-37764048 Msa0729780:intron 35.0%
! GTCATGGTTTTCTCTATCAA+TGG + chr5_1:37764090-37764109 Msa0729780:intron 35.0%
CAGATCCAAACCAAAAAACA+AGG + chr5_1:37764457-37764476 Msa0729780:CDS 35.0%
!!! CATGTCCTTGTTTTTTGGTT+TGG - chr5_1:37764465-37764484 None:intergenic 35.0%
CAAACCAAAAAACAAGGACA+TGG + chr5_1:37764463-37764482 Msa0729780:CDS 35.0%
!!! AAGTCCATGTCCTTGTTTTT+TGG - chr5_1:37764470-37764489 None:intergenic 35.0%
ATATTCAAGACAATGTTGGG+TGG + chr5_1:37764553-37764572 Msa0729780:CDS 35.0%
TATTCAAGACAATGTTGGGT+GGG + chr5_1:37764554-37764573 Msa0729780:CDS 35.0%
AGATAAACATTGCCAATGTG+GGG - chr5_1:37764596-37764615 None:intergenic 35.0%
GAGATAAACATTGCCAATGT+GGG - chr5_1:37764597-37764616 None:intergenic 35.0%
TGAGATAAACATTGCCAATG+TGG - chr5_1:37764598-37764617 None:intergenic 35.0%
! ACTTTTACAAGTCGGGTAAA+CGG - chr5_1:37764678-37764697 None:intergenic 35.0%
! TTTACCCGACTTGTAAAAGT+GGG + chr5_1:37764678-37764697 Msa0729780:CDS 35.0%
! AATGTAGAGTTAGGCACTTT+TGG - chr5_1:37764732-37764751 None:intergenic 35.0%
GATGCATCAATAACATTAGG+AGG + chr5_1:37764774-37764793 Msa0729780:CDS 35.0%
AACGGATGAAATATCAAGGA+AGG - chr5_1:37764899-37764918 None:intergenic 35.0%
ATTTCTCATGCTAGCTATGT+CGG + chr5_1:37765291-37765310 Msa0729780:intron 35.0%
GATGGTCTATGTCTTATCTA+TGG - chr5_1:37765863-37765882 None:intergenic 35.0%
TTCACGACAAAACAAAGTGA+TGG - chr5_1:37765881-37765900 None:intergenic 35.0%
GATAAAACTCCTTTATCGCT+TGG - chr5_1:37766021-37766040 None:intergenic 35.0%
! GTTTTTGTCGGAGAACTTAT+GGG - chr5_1:37766117-37766136 None:intergenic 35.0%
! AGTTTTTGTCGGAGAACTTA+TGG - chr5_1:37766118-37766137 None:intergenic 35.0%
!! AAAGATGATTTTGGTGGTTG+TGG - chr5_1:37766223-37766242 None:intergenic 35.0%
GGAGTTAGTTATGATCACAT+AGG - chr5_1:37766960-37766979 None:intergenic 35.0%
ACTAACTCCCCTAAGATTAA+AGG + chr5_1:37766971-37766990 Msa0729780:intron 35.0%
GCAAGTTATCACAGATTACA+AGG - chr5_1:37767029-37767048 None:intergenic 35.0%
ACACAAGTTAGTGTAGTGTA+TGG + chr5_1:37767050-37767069 Msa0729780:intron 35.0%
!!! TGTTCATAGTTTTGGCTTGT+TGG - chr5_1:37767358-37767377 None:intergenic 35.0%
! TAGGTGTCTGTTCATAGTTT+TGG - chr5_1:37767366-37767385 None:intergenic 35.0%
TATAACCTTCCTTCACAGAA+TGG + chr5_1:37767514-37767533 Msa0729780:CDS 35.0%
ATAACCTTCCTTCACAGAAT+GGG + chr5_1:37767515-37767534 Msa0729780:CDS 35.0%
CGTTGAAATGAAACGAAAGA+AGG + chr5_1:37767583-37767602 Msa0729780:CDS 35.0%
! TAATCCCAATCTCAGTCTTT+TGG + chr5_1:37767645-37767664 Msa0729780:CDS 35.0%
ATTCCATGAAGGCTATATTG+TGG - chr5_1:37767677-37767696 None:intergenic 35.0%
ACAATATAGCCTTCATGGAA+TGG + chr5_1:37767676-37767695 Msa0729780:CDS 35.0%
! GCTGAAGCTTTTATGTCAAT+AGG + chr5_1:37767698-37767717 Msa0729780:CDS 35.0%
!!! GTACTGCAATGGCATTTTTT+TGG + chr5_1:37767765-37767784 Msa0729780:CDS 35.0%
TAATCTCAATAAGGGGAAGT+TGG + chr5_1:37767886-37767905 Msa0729780:CDS 35.0%
! GGAAGTTGGAATACTTTTAC+TGG + chr5_1:37767900-37767919 Msa0729780:CDS 35.0%
AACTGTTATCCCCTTTATGA+TGG - chr5_1:37768006-37768025 None:intergenic 35.0%
GAGTTGCTTAGATTTGGATT+TGG + chr5_1:37768097-37768116 Msa0729780:three_prime_UTR 35.0%
TCACATAACTTCTACAAGTG+TGG - chr5_1:37768126-37768145 None:intergenic 35.0%
!! GCTTTGAAACCCTAACTCTT+TGG + chr5_1:37762146-37762165 Msa0729780:intron 40.0%
! GTGTTAGCAGCTTTGGTTAA+TGG - chr5_1:37762572-37762591 None:intergenic 40.0%
AGATGAATAAGTGAGGAGTC+TGG + chr5_1:37763541-37763560 Msa0729780:intron 40.0%
TTAAGACCACCACCTTGTAA+AGG + chr5_1:37764303-37764322 Msa0729780:CDS 40.0%
TAAGACCACCACCTTGTAAA+GGG + chr5_1:37764304-37764323 Msa0729780:CDS 40.0%
TCACTTCTACTAAGTGCACT+CGG + chr5_1:37764378-37764397 Msa0729780:CDS 40.0%
ATTCAAGACAATGTTGGGTG+GGG + chr5_1:37764555-37764574 Msa0729780:CDS 40.0%
!! TTGGTGGATATCGACTTTAC+CGG + chr5_1:37764631-37764650 Msa0729780:CDS 40.0%
! CTTTTACAAGTCGGGTAAAC+GGG - chr5_1:37764677-37764696 None:intergenic 40.0%
! GTTTACCCGACTTGTAAAAG+TGG + chr5_1:37764677-37764696 Msa0729780:CDS 40.0%
TTCCAATCATTGCTCACCTA+AGG - chr5_1:37765141-37765160 None:intergenic 40.0%
AATGAACTCCGAGGATTATG+TGG - chr5_1:37765274-37765293 None:intergenic 40.0%
AATAGGAATGAGAGTAGGTC+AGG - chr5_1:37765810-37765829 None:intergenic 40.0%
TCGCAAATAGGAATGAGAGT+AGG - chr5_1:37765815-37765834 None:intergenic 40.0%
GAGAACCTCTTTGCTTCTTT+CGG + chr5_1:37765833-37765852 Msa0729780:intron 40.0%
GACTACTGGTGTGTGTAAAT+TGG - chr5_1:37765937-37765956 None:intergenic 40.0%
TTGAACTGGGATGAATAGAG+TGG - chr5_1:37765975-37765994 None:intergenic 40.0%
! AACCCAAAAGTGTGCTGAAA+GGG + chr5_1:37766624-37766643 Msa0729780:intron 40.0%
TGAAAACACCAGACTTATGG+AGG + chr5_1:37767219-37767238 Msa0729780:CDS 40.0%
TAATCAGGATGGGACCAATA+TGG + chr5_1:37767279-37767298 Msa0729780:CDS 40.0%
AATCAGGATGGGACCAATAT+GGG + chr5_1:37767280-37767299 Msa0729780:CDS 40.0%
!!! CATAGTTTTGGCTTGTTGGA+GGG - chr5_1:37767354-37767373 None:intergenic 40.0%
!!! TCATAGTTTTGGCTTGTTGG+AGG - chr5_1:37767355-37767374 None:intergenic 40.0%
AAATCATTCGAAATCCCAGC+AGG + chr5_1:37767389-37767408 Msa0729780:CDS 40.0%
AATCATTCGAAATCCCAGCA+GGG + chr5_1:37767390-37767409 Msa0729780:CDS 40.0%
GATTAAGACACGGTCATAGA+GGG - chr5_1:37767459-37767478 None:intergenic 40.0%
TGTGAAGGAAGGTTATACCA+CGG - chr5_1:37767511-37767530 None:intergenic 40.0%
GAAACGAAAGAAGGTAGCTA+TGG + chr5_1:37767592-37767611 Msa0729780:CDS 40.0%
AAGAAGGTAGCTATGGAACA+CGG + chr5_1:37767599-37767618 Msa0729780:CDS 40.0%
CAAGCCAAAAGACTGAGATT+GGG - chr5_1:37767652-37767671 None:intergenic 40.0%
ACAAGCCAAAAGACTGAGAT+TGG - chr5_1:37767653-37767672 None:intergenic 40.0%
! GAGTATGACAAGTACTGCAA+TGG + chr5_1:37767754-37767773 Msa0729780:CDS 40.0%
!! CAGTACACTTTTGGTTACCT+TGG + chr5_1:37767814-37767833 Msa0729780:CDS 40.0%
TGCAGTAAACTTGTGTACCA+AGG - chr5_1:37767834-37767853 None:intergenic 40.0%
TTGGTACACAAGTTTACTGC+AGG + chr5_1:37767833-37767852 Msa0729780:CDS 40.0%
TGGTACACAAGTTTACTGCA+GGG + chr5_1:37767834-37767853 Msa0729780:CDS 40.0%
!! GTGAGCTTACTTTAGCTTTG+TGG + chr5_1:37768203-37768222 Msa0729780:three_prime_UTR 40.0%
TATGAAGCACGGACACTTCT+CGG + chr5_1:37762213-37762232 Msa0729780:intron 45.0%
GAAGCTATGAAGCACGGATA+CGG - chr5_1:37762382-37762401 None:intergenic 45.0%
GGTTACTGAGAAGTTAGCAG+TGG + chr5_1:37762496-37762515 Msa0729780:CDS 45.0%
TACTGAGAAGTTAGCAGTGG+TGG + chr5_1:37762499-37762518 Msa0729780:CDS 45.0%
ACTGAGAAGTTAGCAGTGGT+GGG + chr5_1:37762500-37762519 Msa0729780:CDS 45.0%
! GCATGTGAAGCTGTGTTGTT+AGG - chr5_1:37762550-37762569 None:intergenic 45.0%
GCTAACACTCTCACCAACTT+TGG + chr5_1:37762584-37762603 Msa0729780:CDS 45.0%
AACACTCTCACCAACTTTGG+TGG + chr5_1:37762587-37762606 Msa0729780:CDS 45.0%
GCTTGAAGTTCCACCAAAGT+TGG - chr5_1:37762600-37762619 None:intergenic 45.0%
TCAAGCTTGACACCATTGCT+TGG + chr5_1:37762614-37762633 Msa0729780:CDS 45.0%
!! GAAATGAAGGCACCAAGCAA+TGG - chr5_1:37762629-37762648 None:intergenic 45.0%
TCATGTTGTACTCATGGGGT+CGG + chr5_1:37762910-37762929 Msa0729780:intron 45.0%
CATGGGGTCGGGTTTATATA+CGG + chr5_1:37762922-37762941 Msa0729780:intron 45.0%
ATGGGGTCGGGTTTATATAC+GGG + chr5_1:37762923-37762942 Msa0729780:intron 45.0%
AAGATGTTCCTCACAGCACA+AGG + chr5_1:37763024-37763043 Msa0729780:intron 45.0%
! CAAGGTGGTGGTCTTAATTG+CGG - chr5_1:37764300-37764319 None:intergenic 45.0%
AAGACCACCACCTTGTAAAG+GGG + chr5_1:37764305-37764324 Msa0729780:CDS 45.0%
TCTACTAAGTGCACTCGGAT+CGG + chr5_1:37764383-37764402 Msa0729780:CDS 45.0%
CATGGGAACAGCTATACTTG+TGG + chr5_1:37764512-37764531 Msa0729780:CDS 45.0%
ACTTTACCGGAACTTGAACC+CGG + chr5_1:37764644-37764663 Msa0729780:CDS 45.0%
!! CACACCCACTTTTACAAGTC+GGG - chr5_1:37764685-37764704 None:intergenic 45.0%
!! CCACACCCACTTTTACAAGT+CGG - chr5_1:37764686-37764705 None:intergenic 45.0%
AACTCCGAGGATTATGTGGT+GGG - chr5_1:37765270-37765289 None:intergenic 45.0%
AGCATGAGAAATGAACTCCG+AGG - chr5_1:37765283-37765302 None:intergenic 45.0%
! TAGGTCAGGTCGGTTTACAA+GGG - chr5_1:37765796-37765815 None:intergenic 45.0%
GCAAAGAGGTTCTCGCAAAT+AGG - chr5_1:37765827-37765846 None:intergenic 45.0%
AACCTCTTTGCTTCTTTCGG+TGG + chr5_1:37765836-37765855 Msa0729780:intron 45.0%
ACCTCTTTGCTTCTTTCGGT+GGG + chr5_1:37765837-37765856 Msa0729780:intron 45.0%
ACTGGGATGAATAGAGTGGA+CGG - chr5_1:37765971-37765990 None:intergenic 45.0%
GTTGTGGTAAAGTCAAGGTG+CGG - chr5_1:37766207-37766226 None:intergenic 45.0%
TGGTGGTTGTGGTAAAGTCA+AGG - chr5_1:37766212-37766231 None:intergenic 45.0%
!! CTTTCAGCACACTTTTGGGT+TGG - chr5_1:37766625-37766644 None:intergenic 45.0%
! CAACCCAAAAGTGTGCTGAA+AGG + chr5_1:37766623-37766642 Msa0729780:intron 45.0%
! ACCCAAAAGTGTGCTGAAAG+GGG + chr5_1:37766625-37766644 Msa0729780:intron 45.0%
! ACCCCTTTCAGCACACTTTT+GGG - chr5_1:37766629-37766648 None:intergenic 45.0%
! TACCCCTTTCAGCACACTTT+TGG - chr5_1:37766630-37766649 None:intergenic 45.0%
!! GTTGATAGCCTCCATAAGTC+TGG - chr5_1:37767230-37767249 None:intergenic 45.0%
GCTATCAACTGTTCACAGAG+TGG + chr5_1:37767241-37767260 Msa0729780:CDS 45.0%
ATCAACTGTTCACAGAGTGG+AGG + chr5_1:37767244-37767263 Msa0729780:CDS 45.0%
AGAATGCCTGATGCCCATAT+TGG - chr5_1:37767296-37767315 None:intergenic 45.0%
ATCACAGCATATGCCCAACA+AGG + chr5_1:37767320-37767339 Msa0729780:CDS 45.0%
!! CAATGGTGAAGAGCATTGTG+AGG - chr5_1:37767436-37767455 None:intergenic 45.0%
GGATTAAGACACGGTCATAG+AGG - chr5_1:37767460-37767479 None:intergenic 45.0%
CAGTTAATCTACGAGCCACT+CGG - chr5_1:37767481-37767500 None:intergenic 45.0%
AATGCCCATTCTGTGAAGGA+AGG - chr5_1:37767522-37767541 None:intergenic 45.0%
TTCCTTCACAGAATGGGCAT+TGG + chr5_1:37767521-37767540 Msa0729780:CDS 45.0%
AACCAATGCCCATTCTGTGA+AGG - chr5_1:37767526-37767545 None:intergenic 45.0%
! CTTTTTGCTACCTTCGTTGC+TGG + chr5_1:37767557-37767576 Msa0729780:CDS 45.0%
TTCAACGAATCCAGCAACGA+AGG - chr5_1:37767570-37767589 None:intergenic 45.0%
GTGCCACAATATAGCCTTCA+TGG + chr5_1:37767671-37767690 Msa0729780:CDS 45.0%
AAGCTTCAGCCATTCCATGA+AGG - chr5_1:37767688-37767707 None:intergenic 45.0%
GCAGTACTTGTCATACTCTC+AGG - chr5_1:37767752-37767771 None:intergenic 45.0%
AAGTTTACTGCAGGGCCTAA+TGG + chr5_1:37767842-37767861 Msa0729780:CDS 45.0%
GGAAGCCAATTGGTACCATT+AGG - chr5_1:37767860-37767879 None:intergenic 45.0%
!!! TTTTTTTTCTTAAAAAAAAT+CGG - chr5_1:37763218-37763237 None:intergenic 5.0%
!!! TAAAAAAAAAAACTTTTTTT+TGG + chr5_1:37763296-37763315 Msa0729780:intron 5.0%
!!! AAAAAAAAAAACTTTTTTTT+GGG + chr5_1:37763297-37763316 Msa0729780:intron 5.0%
!! AAAAAAAAAAAAAAAAGTAA+GGG - chr5_1:37763581-37763600 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAAGTA+AGG - chr5_1:37763582-37763601 None:intergenic 5.0%
!!! TATTTTTTATTATGAAATTT+TGG + chr5_1:37766316-37766335 Msa0729780:intron 5.0%
!! TGTCGGTGTCGTGTCAATGT+CGG - chr5_1:37762270-37762289 None:intergenic 50.0%
!! GGTGAGAGTGTTAGCAGCTT+TGG - chr5_1:37762579-37762598 None:intergenic 50.0%
CATGTTGTACTCATGGGGTC+GGG + chr5_1:37762911-37762930 Msa0729780:intron 50.0%
CATACCTCCTCCCCTTTACA+AGG - chr5_1:37764318-37764337 None:intergenic 50.0%
GTATGCCAGGAAGCTAGTAC+AGG + chr5_1:37764333-37764352 Msa0729780:CDS 50.0%
! GTTGTCCTGTACTAGCTTCC+TGG - chr5_1:37764341-37764360 None:intergenic 50.0%
CTACTAAGTGCACTCGGATC+GGG + chr5_1:37764384-37764403 Msa0729780:CDS 50.0%
AAGACAATGTTGGGTGGGGA+TGG + chr5_1:37764559-37764578 Msa0729780:CDS 50.0%
AGACAATGTTGGGTGGGGAT+GGG + chr5_1:37764560-37764579 Msa0729780:CDS 50.0%
TTGCCAATGTGGGGATTCCA+AGG - chr5_1:37764587-37764606 None:intergenic 50.0%
! TTCCTTCCGGGTTCAAGTTC+CGG - chr5_1:37764653-37764672 None:intergenic 50.0%
! CCGACTTGTAAAAGTGGGTG+TGG + chr5_1:37764683-37764702 Msa0729780:CDS 50.0%
!!! GTGTGGCTGCTTTTCGTAAG+AGG + chr5_1:37764700-37764719 Msa0729780:CDS 50.0%
GGCCTTAGGTGAGCAATGAT+TGG + chr5_1:37765136-37765155 Msa0729780:intron 50.0%
TCACCCCACCACATAATCCT+CGG + chr5_1:37765263-37765282 Msa0729780:intron 50.0%
ACTCCGAGGATTATGTGGTG+GGG - chr5_1:37765269-37765288 None:intergenic 50.0%
GAACTCCGAGGATTATGTGG+TGG - chr5_1:37765271-37765290 None:intergenic 50.0%
! GTAGGTCAGGTCGGTTTACA+AGG - chr5_1:37765797-37765816 None:intergenic 50.0%
GGAATGAGAGTAGGTCAGGT+CGG - chr5_1:37765806-37765825 None:intergenic 50.0%
CGGATAGCACTAGAGACTAC+TGG - chr5_1:37765951-37765970 None:intergenic 50.0%
CAAGGTGCGGAGAGATATAG+AGG - chr5_1:37766194-37766213 None:intergenic 50.0%
AAACGTTAGCACAACGGGCA+CGG - chr5_1:37766281-37766300 None:intergenic 50.0%
CAAGGCAGCAATAGTGACAG+AGG + chr5_1:37767187-37767206 Msa0729780:CDS 50.0%
ATGGGACCAATATGGGCATC+AGG + chr5_1:37767287-37767306 Msa0729780:CDS 50.0%
!! GAGGGAGAAAGTGCCTTGTT+GGG - chr5_1:37767336-37767355 None:intergenic 50.0%
GAGGATGGTGAATACCGACA+TGG - chr5_1:37767417-37767436 None:intergenic 50.0%
!! GGTGAAGAGCATTGTGAGGA+TGG - chr5_1:37767432-37767451 None:intergenic 50.0%
TGACCGTGTCTTAATCCGAG+TGG + chr5_1:37767463-37767482 Msa0729780:CDS 50.0%
GAGCCACTCGGATTAAGACA+CGG - chr5_1:37767469-37767488 None:intergenic 50.0%
CGAGTGGCTCGTAGATTAAC+TGG + chr5_1:37767479-37767498 Msa0729780:CDS 50.0%
AGATTAACTGGACTCGACCG+TGG + chr5_1:37767491-37767510 Msa0729780:CDS 50.0%
CAGGGCCTAATGGTACCAAT+TGG + chr5_1:37767852-37767871 Msa0729780:CDS 50.0%
ACGGATACGGACACAGACAC+CGG - chr5_1:37762369-37762388 None:intergenic 55.0%
TTGGCACACCTTGTGCTGTG+AGG - chr5_1:37763035-37763054 None:intergenic 55.0%
ACCACCACCTTGTAAAGGGG+AGG + chr5_1:37764308-37764327 Msa0729780:CDS 55.0%
TCCTCCCCTTTACAAGGTGG+TGG - chr5_1:37764312-37764331 None:intergenic 55.0%
ACCACCTTGTAAAGGGGAGG+AGG + chr5_1:37764311-37764330 Msa0729780:CDS 55.0%
ACCTCCTCCCCTTTACAAGG+TGG - chr5_1:37764315-37764334 None:intergenic 55.0%
! TAAAGGGGAGGAGGTATGCC+AGG + chr5_1:37764320-37764339 Msa0729780:CDS 55.0%
TAAGTGCACTCGGATCGGGT+GGG + chr5_1:37764388-37764407 Msa0729780:CDS 55.0%
GACAATGTTGGGTGGGGATG+GGG + chr5_1:37764561-37764580 Msa0729780:CDS 55.0%
TACCGGAACTTGAACCCGGA+AGG + chr5_1:37764648-37764667 Msa0729780:CDS 55.0%
GCCCACCGAAAGAAGCAAAG+AGG - chr5_1:37765841-37765860 None:intergenic 55.0%
!! GGAGGGAGAAAGTGCCTTGT+TGG - chr5_1:37767337-37767356 None:intergenic 55.0%
AATCCCAGCAGGGTCCATGT+CGG + chr5_1:37767400-37767419 Msa0729780:CDS 55.0%
ATACCGACATGGACCCTGCT+GGG - chr5_1:37767406-37767425 None:intergenic 55.0%
AATACCGACATGGACCCTGC+TGG - chr5_1:37767407-37767426 None:intergenic 55.0%
GACACGGTCATAGAGGGCAA+TGG - chr5_1:37767453-37767472 None:intergenic 55.0%
GCACGGACACTTCTCGGACT+AGG + chr5_1:37762219-37762238 Msa0729780:intron 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG + chr5_1:37762347-37762366 Msa0729780:intron 60.0%
CACAGACACCGGACACGACA+CGG - chr5_1:37762358-37762377 None:intergenic 60.0%
CTAAGTGCACTCGGATCGGG+TGG + chr5_1:37764387-37764406 Msa0729780:CDS 60.0%
CAAACGCTACCACGCAGGGT+CGG - chr5_1:37764416-37764435 None:intergenic 60.0%
GCTCCAAACGCTACCACGCA+GGG - chr5_1:37764420-37764439 None:intergenic 60.0%
GGGCCTTGGAATCCCCACAT+TGG + chr5_1:37764581-37764600 Msa0729780:CDS 60.0%
! GGGTAAACGGGCTTCCTTCC+GGG - chr5_1:37764665-37764684 None:intergenic 60.0%
! CGGGTAAACGGGCTTCCTTC+CGG - chr5_1:37764666-37764685 None:intergenic 60.0%
CGGACGCGACACGTGACACT+GGG - chr5_1:37762250-37762269 None:intergenic 65.0%
TCGGACGCGACACGTGACAC+TGG - chr5_1:37762251-37762270 None:intergenic 65.0%
! CGACCCTGCGTGGTAGCGTT+TGG + chr5_1:37764414-37764433 Msa0729780:CDS 65.0%
GGCTCCAAACGCTACCACGC+AGG - chr5_1:37764421-37764440 None:intergenic 65.0%
GTTGGGTGGGGATGGGGCCT+TGG + chr5_1:37764567-37764586 Msa0729780:CDS 70.0%
GGGTGGGATCCGACCCTGCG+TGG + chr5_1:37764404-37764423 Msa0729780:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 37761995 37768324 37761995 ID=Msa0729780;Name=Msa0729780
chr5_1 mRNA 37761995 37768324 37761995 ID=Msa0729780-mRNA-1;Parent=Msa0729780;Name=Msa0729780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=47|1|1|1|1|1|4|258|588
chr5_1 exon 37761995 37762141 37761995 ID=Msa0729780-mRNA-1:exon:11364;Parent=Msa0729780-mRNA-1
chr5_1 exon 37762489 37762706 37762489 ID=Msa0729780-mRNA-1:exon:11365;Parent=Msa0729780-mRNA-1
chr5_1 exon 37764264 37764823 37764264 ID=Msa0729780-mRNA-1:exon:11366;Parent=Msa0729780-mRNA-1
chr5_1 exon 37767178 37768324 37767178 ID=Msa0729780-mRNA-1:exon:11367;Parent=Msa0729780-mRNA-1
chr5_1 five_prime_UTR 37761995 37762041 37761995 ID=Msa0729780-mRNA-1:five_prime_utr;Parent=Msa0729780-mRNA-1
chr5_1 CDS 37762042 37762141 37762042 ID=Msa0729780-mRNA-1:cds;Parent=Msa0729780-mRNA-1
chr5_1 CDS 37762489 37762706 37762489 ID=Msa0729780-mRNA-1:cds;Parent=Msa0729780-mRNA-1
chr5_1 CDS 37764264 37764823 37764264 ID=Msa0729780-mRNA-1:cds;Parent=Msa0729780-mRNA-1
chr5_1 CDS 37767178 37768066 37767178 ID=Msa0729780-mRNA-1:cds;Parent=Msa0729780-mRNA-1
chr5_1 three_prime_UTR 37768067 37768324 37768067 ID=Msa0729780-mRNA-1:three_prime_utr;Parent=Msa0729780-mRNA-1
Gene Sequence

>Msa0729780

ATGTACTGCAAAATGAATACAGGTTTTGAAAAGATGGAGAAGAATGGTAACCATACTAGAAGGAAAAAAGGAGGGCTTGCAACAATGCCTTTTATCTTTGCTAATGAGGTTACTGAGAAGTTAGCAGTGGTGGGTTTCAATGCCAACATGATAAGCTACCTAACAACACAGCTTCACATGCCATTAACCAAAGCTGCTAACACTCTCACCAACTTTGGTGGAACTTCAAGCTTGACACCATTGCTTGGTGCCTTCATTTCTGATTCTTTTGCTGGAAAATTCATGACTATTACCGTTGCTTCCATTATTTACCAGATAGGTATGATTAGTTTGACTATGTCGGCGATACTTCCGCAATTAAGACCACCACCTTGTAAAGGGGAGGAGGTATGCCAGGAAGCTAGTACAGGACAACTCGCTATTCTATATGTGTCACTTCTACTAAGTGCACTCGGATCGGGTGGGATCCGACCCTGCGTGGTAGCGTTTGGAGCCGATCAATTCGATGAATCAGATCCAAACCAAAAAACAAGGACATGGACTTATTTTAATTGGTACTATTTTGTCATGGGAACAGCTATACTTGTGGCTGTGACTGTTCTAGTTTATATTCAAGACAATGTTGGGTGGGGATGGGGCCTTGGAATCCCCACATTGGCAATGTTTATCTCAATAATTGCATTCATTGGTGGATATCGACTTTACCGGAACTTGAACCCGGAAGGAAGCCCGTTTACCCGACTTGTAAAAGTGGGTGTGGCTGCTTTTCGTAAGAGGAAGATACCAAAAGTGCCTAACTCTACATTGTTATATCAAAATGATGAACTTGATGCATCAATAACATTAGGAGGGAAGCTGCTTCATTCTGATCAGTTAAAATTTTTAGACAAGGCAGCAATAGTGACAGAGGAAGACAATATGAAAACACCAGACTTATGGAGGCTATCAACTGTTCACAGAGTGGAGGAATTGAAATCAATAATCAGGATGGGACCAATATGGGCATCAGGCATTCTTCTAATCACAGCATATGCCCAACAAGGCACTTTCTCCCTCCAACAAGCCAAAACTATGAACAGACACCTAACAAAATCATTCGAAATCCCAGCAGGGTCCATGTCGGTATTCACCATCCTCACAATGCTCTTCACCATTGCCCTCTATGACCGTGTCTTAATCCGAGTGGCTCGTAGATTAACTGGACTCGACCGTGGTATAACCTTCCTTCACAGAATGGGCATTGGTTTTGTGATCTCACTTTTTGCTACCTTCGTTGCTGGATTCGTTGAAATGAAACGAAAGAAGGTAGCTATGGAACACGGACTCGTTGAACACTCTAGTGAAATAATCCCAATCTCAGTCTTTTGGCTTGTGCCACAATATAGCCTTCATGGAATGGCTGAAGCTTTTATGTCAATAGGGCATTTGGAGTTTTTCTATGATCAAGCTCCTGAGAGTATGACAAGTACTGCAATGGCATTTTTTTGGACATCAATTTCTCTAGGGAATTATATCAGTACACTTTTGGTTACCTTGGTACACAAGTTTACTGCAGGGCCTAATGGTACCAATTGGCTTCCTGATAATAATCTCAATAAGGGGAAGTTGGAATACTTTTACTGGCTAATCACACTCTTGCAGTTTTTTAATCTCATTTACTACTTGATTTGTGCTAAAATGTACACCTATAAGCAAATTCAGATCCATCATAAAGGGGATAACAGTTCAGAAGACAACAATATTGAGCTTGCTAGTACTACAGTTTAA
Protein sequence

>Msa0729780

MYCKMNTGFEKMEKNGNHTRRKKGGLATMPFIFANEVTEKLAVVGFNANMISYLTTQLHMPLTKAANTLTNFGGTSSLTPLLGAFISDSFAGKFMTITVASIIYQIGMISLTMSAILPQLRPPPCKGEEVCQEASTGQLAILYVSLLLSALGSGGIRPCVVAFGADQFDESDPNQKTRTWTYFNWYYFVMGTAILVAVTVLVYIQDNVGWGWGLGIPTLAMFISIIAFIGGYRLYRNLNPEGSPFTRLVKVGVAAFRKRKIPKVPNSTLLYQNDELDASITLGGKLLHSDQLKFLDKAAIVTEEDNMKTPDLWRLSTVHRVEELKSIIRMGPIWASGILLITAYAQQGTFSLQQAKTMNRHLTKSFEIPAGSMSVFTILTMLFTIALYDRVLIRVARRLTGLDRGITFLHRMGIGFVISLFATFVAGFVEMKRKKVAMEHGLVEHSSEIIPISVFWLVPQYSLHGMAEAFMSIGHLEFFYDQAPESMTSTAMAFFWTSISLGNYISTLLVTLVHKFTAGPNGTNWLPDNNLNKGKLEYFYWLITLLQFFNLIYYLICAKMYTYKQIQIHHKGDNSSEDNNIELASTTV*