AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1031170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031170 MtrunA17_Chr7g0252621 87.413 143 15 1 36 175 151 293 4.59e-88 259
Msa1031170 MtrunA17_Chr7g0252621 95.918 49 2 0 1 49 1 49 3.83e-27 103
Msa1031170 MtrunA17_Chr7g0252631 86.713 143 16 1 36 175 151 293 1.21e-87 258
Msa1031170 MtrunA17_Chr7g0252631 93.878 49 3 0 1 49 1 49 3.27e-26 101
Msa1031170 MtrunA17_Chr7g0252601 75.524 143 32 1 36 175 151 293 1.56e-79 238
Msa1031170 MtrunA17_Chr7g0252601 72.000 50 14 0 1 50 1 50 2.09e-17 77.4
Msa1031170 MtrunA17_Chr6g0461731 77.622 143 29 1 36 175 174 316 3.78e-78 235
Msa1031170 MtrunA17_Chr6g0461731 63.265 49 18 0 1 49 24 72 1.62e-15 72.8
Msa1031170 MtrunA17_Chr6g0461761 76.224 143 31 1 36 175 151 293 2.53e-77 232
Msa1031170 MtrunA17_Chr6g0461761 59.184 49 20 0 1 49 1 49 4.21e-13 65.9
Msa1031170 MtrunA17_Chr2g0323161 48.062 129 59 2 53 173 162 290 4.39e-37 129
Msa1031170 MtrunA17_Chr4g0072611 54.167 120 49 3 54 170 165 281 1.04e-36 128
Msa1031170 MtrunA17_Chr4g0054431 44.604 139 73 2 34 169 150 287 1.47e-36 128
Msa1031170 MtrunA17_Chr4g0054451 44.604 139 73 2 34 169 152 289 1.57e-36 128
Msa1031170 MtrunA17_Chr4g0023961 47.200 125 58 2 53 169 164 288 1.29e-35 125
Msa1031170 MtrunA17_Chr3g0122031 47.222 144 65 3 34 173 145 281 1.39e-34 122
Msa1031170 MtrunA17_Chr3g0122021 47.222 144 65 3 34 173 145 281 1.57e-34 122
Msa1031170 MtrunA17_Chr8g0377841 48.592 142 63 4 34 171 148 283 3.07e-34 122
Msa1031170 MtrunA17_Chr4g0072681 52.033 123 54 2 54 171 123 245 1.17e-33 119
Msa1031170 MtrunA17_Chr7g0258911 52.941 119 50 3 54 169 164 279 2.48e-33 119
Msa1031170 MtrunA17_Chr6g0486581 41.958 143 76 4 34 169 141 283 3.42e-33 119
Msa1031170 MtrunA17_Chr4g0072641 50.427 117 42 3 54 169 47 148 3.65e-33 115
Msa1031170 MtrunA17_Chr4g0072671 50.000 126 51 3 54 171 166 287 4.07e-32 116
Msa1031170 MtrunA17_Chr4g0072601 47.059 119 57 3 54 169 168 283 2.61e-31 114
Msa1031170 MtrunA17_Chr4g0071341 48.760 121 53 3 54 169 165 281 6.59e-31 113
Msa1031170 MtrunA17_Chr1g0206081 41.844 141 78 2 34 170 155 295 1.59e-30 112
Msa1031170 MtrunA17_Chr1g0206681 40.426 141 79 3 34 169 151 291 3.05e-30 111
Msa1031170 MtrunA17_Chr8g0390201 40.690 145 75 5 34 169 67 209 5.30e-30 108
Msa1031170 MtrunA17_Chr2g0299061 47.200 125 53 3 54 169 166 286 5.83e-29 108
Msa1031170 MtrunA17_Chr8g0340001 35.252 139 86 2 34 169 94 231 4.04e-26 99.8
Msa1031170 MtrunA17_Chr8g0374231 45.098 102 55 1 70 170 1 102 6.15e-26 95.5
Msa1031170 MtrunA17_Chr3g0096651 35.606 132 72 3 49 175 165 288 5.52e-22 89.7
Msa1031170 MtrunA17_Chr8g0389641 38.525 122 31 2 53 173 168 246 3.43e-21 87.0
Msa1031170 MtrunA17_Chr5g0443391 35.833 120 70 2 53 171 167 280 9.35e-20 84.0
Msa1031170 MtrunA17_Chr7g0235541 36.441 118 69 3 53 170 97 208 1.43e-19 82.0
Msa1031170 MtrunA17_Chr2g0303721 36.879 141 76 8 34 170 140 271 1.09e-17 78.2
Msa1031170 MtrunA17_Chr4g0028221 34.314 102 63 2 68 169 207 304 4.02e-15 71.2
Msa1031170 MtrunA17_Chr8g0365231 29.630 108 71 1 68 170 204 311 1.73e-14 69.7
Msa1031170 MtrunA17_Chr2g0303861 34.615 130 76 6 34 159 147 271 5.36e-14 68.2
Msa1031170 MtrunA17_Chr5g0410621 28.571 119 78 3 57 170 190 306 7.33e-14 68.2
Msa1031170 MtrunA17_Chr7g0264731 34.906 106 64 3 64 169 191 291 1.28e-13 67.0
Msa1031170 MtrunA17_Chr1g0180451 29.861 144 80 4 42 169 156 294 5.85e-13 65.5
Msa1031170 MtrunA17_Chr2g0327411 28.777 139 90 4 34 169 177 309 9.02e-13 65.1
Msa1031170 MtrunA17_Chr8g0382041 27.660 141 90 4 36 169 159 294 1.24e-11 62.0
Msa1031170 MtrunA17_Chr8g0375981 30.769 117 72 4 57 169 179 290 6.31e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031170 AT5G13870.2 71.034 145 39 1 34 175 149 293 2.21e-74 225
Msa1031170 AT5G13870.2 60.465 43 17 0 7 49 7 49 7.60e-13 65.5
Msa1031170 AT5G13870.1 71.034 145 39 1 34 175 149 293 2.21e-74 225
Msa1031170 AT5G13870.1 60.465 43 17 0 7 49 7 49 7.60e-13 65.5
Msa1031170 AT5G13870.3 71.034 145 39 1 34 175 149 293 2.21e-74 225
Msa1031170 AT5G13870.3 60.465 43 17 0 7 49 7 49 7.60e-13 65.5
Msa1031170 AT2G06850.2 70.139 144 40 1 34 174 92 235 6.14e-73 219
Msa1031170 AT2G06850.1 70.139 144 40 1 34 174 152 295 9.31e-73 221
Msa1031170 AT3G23730.1 50.340 147 66 3 34 173 144 290 2.20e-41 140
Msa1031170 AT5G65730.1 45.714 140 72 2 34 170 153 291 1.74e-39 135
Msa1031170 AT4G14130.1 49.660 147 64 4 34 173 145 288 1.49e-38 133
Msa1031170 AT4G03210.2 48.000 125 63 1 53 175 138 262 2.73e-37 129
Msa1031170 AT4G03210.1 48.000 125 63 1 53 175 166 290 5.80e-37 129
Msa1031170 AT5G57560.1 52.846 123 47 3 54 169 163 281 9.71e-37 128
Msa1031170 AT5G57550.1 47.183 142 67 3 34 171 147 284 5.04e-36 127
Msa1031170 AT5G48070.1 53.846 117 48 3 54 169 170 281 5.51e-35 124
Msa1031170 AT4G37800.1 42.857 140 76 2 34 170 152 290 4.53e-34 122
Msa1031170 AT4G30270.1 51.282 117 41 3 54 169 164 265 2.14e-33 119
Msa1031170 AT4G25810.1 50.000 122 51 4 54 169 166 283 2.41e-33 120
Msa1031170 AT4G30290.1 50.427 117 52 3 54 169 165 276 3.45e-33 119
Msa1031170 AT1G65310.1 51.282 117 51 3 54 169 170 281 1.26e-32 118
Msa1031170 AT1G65310.2 51.282 117 51 3 54 169 192 303 1.42e-32 118
Msa1031170 AT4G30280.1 49.573 117 53 3 54 169 170 281 2.82e-32 117
Msa1031170 AT5G57540.1 48.387 124 56 4 53 172 165 284 5.53e-31 114
Msa1031170 AT5G57530.1 47.581 124 57 4 53 172 166 285 1.83e-29 109
Msa1031170 AT2G14620.2 38.298 141 82 3 34 169 104 244 1.33e-28 106
Msa1031170 AT1G11545.1 40.559 143 79 3 34 170 158 300 1.47e-28 107
Msa1031170 AT2G14620.3 38.298 141 82 3 34 169 93 233 1.88e-28 106
Msa1031170 AT2G18800.1 38.065 155 74 5 34 169 145 296 2.39e-28 107
Msa1031170 AT2G14620.1 38.298 141 82 3 34 169 154 294 3.13e-28 107
Msa1031170 AT4G28850.1 37.838 148 84 4 34 173 144 291 5.46e-28 106
Msa1031170 AT4G13090.1 43.802 121 63 3 53 170 171 289 1.57e-27 105
Msa1031170 AT4G25820.1 45.902 122 58 3 53 170 169 286 2.23e-26 101
Msa1031170 AT4G13080.1 38.136 118 71 2 53 170 177 292 3.03e-24 96.3
Msa1031170 AT3G25050.1 40.000 120 65 4 53 169 174 289 4.33e-22 90.5
Msa1031170 AT1G32170.1 31.250 112 74 2 60 169 183 293 4.70e-16 74.7
Msa1031170 AT3G44990.1 32.609 138 85 4 34 169 162 293 7.95e-15 70.9
Msa1031170 AT1G10550.1 27.027 148 95 4 34 169 163 309 1.31e-13 67.8
Msa1031170 AT1G14720.1 25.180 139 100 2 34 169 153 290 1.59e-13 67.4
Msa1031170 AT2G36870.1 32.520 123 78 2 49 171 182 299 2.56e-13 66.6
Msa1031170 AT2G01850.1 26.619 139 98 2 34 169 153 290 2.66e-12 63.9
Msa1031170 AT4G18990.2 27.826 115 70 1 68 169 124 238 4.06e-12 63.2
Msa1031170 AT4G18990.1 29.310 116 67 2 68 169 198 312 6.53e-12 63.2

Find 39 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATATACAATAGTTTA+TGG 0.145009 7_1:+65640987 Msa1031170:CDS
ACAAAATGAATTCTTCATTT+TGG 0.155254 7_1:+65639971 None:intergenic
ATCAGTGCAATAGTTGTAAA+TGG 0.324527 7_1:-65641230 None:intergenic
GCATCAAGATCACGAAATTC+AGG 0.366582 7_1:-65641166 None:intergenic
CTGCCAAATGGTACATCAAC+TGG 0.374020 7_1:-65640054 None:intergenic
TTTACAACTATTGCACTGAT+AGG 0.375154 7_1:+65641233 Msa1031170:CDS
TACAAAGGTTTCCACATTGA+TGG 0.385031 7_1:+65641082 Msa1031170:CDS
GCCTGCTATGAATGGTGCTT+TGG 0.386418 7_1:-65641059 None:intergenic
GTTTATGGAATGCAGATGAT+TGG 0.387916 7_1:+65641002 Msa1031170:CDS
GATCATATCAAATACTTCAA+TGG 0.398017 7_1:+65640102 Msa1031170:CDS
TTGGGCCACAAGAGGTGGTT+TGG 0.402579 7_1:+65641021 Msa1031170:CDS
AAGCCAGTTGATGTACCATT+TGG 0.454819 7_1:+65640051 Msa1031170:CDS
GGGTAATAGTTTCTGCCAAA+TGG 0.460623 7_1:-65640066 None:intergenic
GCAGAAACTATTACCCAACT+TGG 0.466236 7_1:+65640073 Msa1031170:CDS
CTCAATGGCGTAGACTAAGA+TGG 0.467350 7_1:+65641191 Msa1031170:CDS
TTTATGGAATGCAGATGATT+GGG 0.473254 7_1:+65641003 Msa1031170:CDS
GTGATCTTGATGCTGCTCAA+TGG 0.483264 7_1:+65641176 Msa1031170:CDS
TTGCATTCTGGTGGAACTTG+AGG 0.515049 7_1:-65641265 None:intergenic
TATGATCAAAAGCCCAAGTT+GGG 0.522271 7_1:-65640086 None:intergenic
TTTCTCCAAACCACCTCTTG+TGG 0.522277 7_1:-65641026 None:intergenic
GGTACATCAACTGGCTTACG+TGG 0.534251 7_1:-65640045 None:intergenic
CAGAAACTATTACCCAACTT+GGG 0.544276 7_1:+65640074 Msa1031170:CDS
CCTTTGTAGCCTGCTATGAA+TGG 0.547075 7_1:-65641067 None:intergenic
ATATGATCAAAAGCCCAAGT+TGG 0.560782 7_1:-65640087 None:intergenic
TCCAAAGCACCATTCATAGC+AGG 0.568617 7_1:+65641058 Msa1031170:CDS
GTGCAACACAGGGTAAAAGA+TGG 0.568853 7_1:+65641134 Msa1031170:CDS
GTGGTTTGGAGAAAACAGAT+TGG 0.570318 7_1:+65641035 Msa1031170:CDS
CCATTCATAGCAGGCTACAA+AGG 0.570384 7_1:+65641067 Msa1031170:CDS
GATGATTGGGCCACAAGAGG+TGG 0.580281 7_1:+65641016 Msa1031170:CDS
TCAATGGCGTAGACTAAGAT+GGG 0.582539 7_1:+65641192 Msa1031170:CDS
CAACACAGGGTAAAAGATGG+TGG 0.587332 7_1:+65641137 Msa1031170:CDS
CGATGAACATTTAAATGTCA+CGG 0.595421 7_1:-65641294 None:intergenic
GCAGATGATTGGGCCACAAG+AGG 0.605501 7_1:+65641013 Msa1031170:CDS
GTACATCAACTGGCTTACGT+GGG 0.619680 7_1:-65640044 None:intergenic
TACATCAACTGGCTTACGTG+GGG 0.630956 7_1:-65640043 None:intergenic
ACAAAACTTCGCATTAACAG+AGG 0.641098 7_1:-65641113 None:intergenic
AACACAGGGTAAAAGATGGT+GGG 0.641505 7_1:+65641138 Msa1031170:CDS
ACATCAACTGGCTTACGTGG+GGG 0.680439 7_1:-65640042 None:intergenic
AGGATTCACAACCATCAATG+TGG 0.698159 7_1:-65641093 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATTACTCAAATT+TGG - chr7_1:65640860-65640879 None:intergenic 10.0%
!! ATTAATTAATTACTCAAATT+TGG - chr7_1:65640860-65640879 None:intergenic 10.0%
!!! TTTACTTTTTAGTTAGATTA+GGG - chr7_1:65640825-65640844 None:intergenic 15.0%
!!! TTTTACTTTTTAGTTAGATT+AGG - chr7_1:65640826-65640845 None:intergenic 15.0%
!!! AATTTTTTTGAAACTATGAT+TGG + chr7_1:65640877-65640896 Msa1031170:intron 15.0%
!!! AAACTATTGTATATTTTCAT+TGG - chr7_1:65640986-65641005 None:intergenic 15.0%
!! TGAAAATATACAATAGTTTA+TGG + chr7_1:65640987-65641006 Msa1031170:CDS 15.0%
!!! TTTACTTTTTAGTTAGATTA+GGG - chr7_1:65640825-65640844 None:intergenic 15.0%
!!! TTTTACTTTTTAGTTAGATT+AGG - chr7_1:65640826-65640845 None:intergenic 15.0%
!!! AATTTTTTTGAAACTATGAT+TGG + chr7_1:65640877-65640896 Msa1031170:intron 15.0%
!!! AAACTATTGTATATTTTCAT+TGG - chr7_1:65640986-65641005 None:intergenic 15.0%
!! TGAAAATATACAATAGTTTA+TGG + chr7_1:65640987-65641006 Msa1031170:CDS 15.0%
!!! TTTCTAACTACTTTTTTAAC+AGG + chr7_1:65640372-65640391 Msa1031170:intron 20.0%
!! ATGATAATAATTGTTGTGAT+TGG + chr7_1:65640554-65640573 Msa1031170:intron 20.0%
!! ACATTTGTTTGTAAAATGTA+AGG - chr7_1:65640659-65640678 None:intergenic 20.0%
!! CTAAAAAGTAAAAACTATTG+TGG + chr7_1:65640833-65640852 Msa1031170:intron 20.0%
!!! TATTGTATATTTTCATTGGT+TGG - chr7_1:65640982-65641001 None:intergenic 20.0%
!!! TTTCTAACTACTTTTTTAAC+AGG + chr7_1:65640372-65640391 Msa1031170:intron 20.0%
!! ATGATAATAATTGTTGTGAT+TGG + chr7_1:65640554-65640573 Msa1031170:intron 20.0%
!! ACATTTGTTTGTAAAATGTA+AGG - chr7_1:65640659-65640678 None:intergenic 20.0%
!! CTAAAAAGTAAAAACTATTG+TGG + chr7_1:65640833-65640852 Msa1031170:intron 20.0%
!!! TATTGTATATTTTCATTGGT+TGG - chr7_1:65640982-65641001 None:intergenic 20.0%
! GATCATATCAAATACTTCAA+TGG + chr7_1:65640102-65640121 Msa1031170:CDS 25.0%
! TTTCAGTATGAACATTAAGA+TGG + chr7_1:65640434-65640453 Msa1031170:intron 25.0%
! GATCATATCAAATACTTCAA+TGG + chr7_1:65640102-65640121 Msa1031170:CDS 25.0%
! TTTCAGTATGAACATTAAGA+TGG + chr7_1:65640434-65640453 Msa1031170:intron 25.0%
CATATCAAATACTTCAATGG+TGG + chr7_1:65640105-65640124 Msa1031170:intron 30.0%
! GTAGTACGAGTTTAAAACTA+GGG - chr7_1:65640342-65640361 None:intergenic 30.0%
! TGTAGTACGAGTTTAAAACT+AGG - chr7_1:65640343-65640362 None:intergenic 30.0%
!!! ACTACTTTTTTAACAGGTAC+TGG + chr7_1:65640378-65640397 Msa1031170:intron 30.0%
!!! TGAGATAGATTTTGAGTTCT+TGG + chr7_1:65640616-65640635 Msa1031170:intron 30.0%
!!! GAGATAGATTTTGAGTTCTT+GGG + chr7_1:65640617-65640636 Msa1031170:intron 30.0%
!!! AGATAGATTTTGAGTTCTTG+GGG + chr7_1:65640618-65640637 Msa1031170:intron 30.0%
TTACAAACAAATGTGTTCAC+TGG + chr7_1:65640665-65640684 Msa1031170:intron 30.0%
AAGAACAAAGGATCTTTCTT+TGG + chr7_1:65640702-65640721 Msa1031170:intron 30.0%
! TATCTGTGAAACTCTTTTGT+TGG - chr7_1:65640734-65640753 None:intergenic 30.0%
!!! ATTGGTTTGCAGATTTTTTG+TGG + chr7_1:65640895-65640914 Msa1031170:intron 30.0%
!!! CTGTTTTTGAACACTCTTAT+TGG - chr7_1:65640929-65640948 None:intergenic 30.0%
!! TTTTCATTGGTTGGTCAAAT+GGG - chr7_1:65640973-65640992 None:intergenic 30.0%
!! ATTTTCATTGGTTGGTCAAA+TGG - chr7_1:65640974-65640993 None:intergenic 30.0%
TTTATGGAATGCAGATGATT+GGG + chr7_1:65641003-65641022 Msa1031170:CDS 30.0%
ATCAGTGCAATAGTTGTAAA+TGG - chr7_1:65641233-65641252 None:intergenic 30.0%
! TTTACAACTATTGCACTGAT+AGG + chr7_1:65641233-65641252 Msa1031170:CDS 30.0%
CATATCAAATACTTCAATGG+TGG + chr7_1:65640105-65640124 Msa1031170:intron 30.0%
! GTAGTACGAGTTTAAAACTA+GGG - chr7_1:65640342-65640361 None:intergenic 30.0%
! TGTAGTACGAGTTTAAAACT+AGG - chr7_1:65640343-65640362 None:intergenic 30.0%
!!! ACTACTTTTTTAACAGGTAC+TGG + chr7_1:65640378-65640397 Msa1031170:intron 30.0%
!!! TGAGATAGATTTTGAGTTCT+TGG + chr7_1:65640616-65640635 Msa1031170:intron 30.0%
!!! GAGATAGATTTTGAGTTCTT+GGG + chr7_1:65640617-65640636 Msa1031170:intron 30.0%
!!! AGATAGATTTTGAGTTCTTG+GGG + chr7_1:65640618-65640637 Msa1031170:intron 30.0%
TTACAAACAAATGTGTTCAC+TGG + chr7_1:65640665-65640684 Msa1031170:intron 30.0%
AAGAACAAAGGATCTTTCTT+TGG + chr7_1:65640702-65640721 Msa1031170:intron 30.0%
! TATCTGTGAAACTCTTTTGT+TGG - chr7_1:65640734-65640753 None:intergenic 30.0%
!!! ATTGGTTTGCAGATTTTTTG+TGG + chr7_1:65640895-65640914 Msa1031170:intron 30.0%
!!! CTGTTTTTGAACACTCTTAT+TGG - chr7_1:65640929-65640948 None:intergenic 30.0%
!! TTTTCATTGGTTGGTCAAAT+GGG - chr7_1:65640973-65640992 None:intergenic 30.0%
!! ATTTTCATTGGTTGGTCAAA+TGG - chr7_1:65640974-65640993 None:intergenic 30.0%
TTTATGGAATGCAGATGATT+GGG + chr7_1:65641003-65641022 Msa1031170:CDS 30.0%
ATCAGTGCAATAGTTGTAAA+TGG - chr7_1:65641233-65641252 None:intergenic 30.0%
! TTTACAACTATTGCACTGAT+AGG + chr7_1:65641233-65641252 Msa1031170:CDS 30.0%
CAGAAACTATTACCCAACTT+GGG + chr7_1:65640074-65640093 Msa1031170:CDS 35.0%
TATGATCAAAAGCCCAAGTT+GGG - chr7_1:65640089-65640108 None:intergenic 35.0%
ATATGATCAAAAGCCCAAGT+TGG - chr7_1:65640090-65640109 None:intergenic 35.0%
CTTCATCTTGATAAGTACAC+TGG + chr7_1:65640141-65640160 Msa1031170:intron 35.0%
!! TTTTCTATTTAGCTCGTGCT+CGG + chr7_1:65640188-65640207 Msa1031170:intron 35.0%
TCCAAAGGTTCATACTTGTT+TGG + chr7_1:65640408-65640427 Msa1031170:intron 35.0%
ACCAAACAAGTATGAACCTT+TGG - chr7_1:65640412-65640431 None:intergenic 35.0%
GACAAGGTAACAAAGAACAA+AGG + chr7_1:65640690-65640709 Msa1031170:intron 35.0%
TTCACAGATACTCCATTCTA+TGG + chr7_1:65640744-65640763 Msa1031170:intron 35.0%
CAAGTAGTACTTACACAATC+TGG - chr7_1:65640778-65640797 None:intergenic 35.0%
!! AAGAGTGTTCAAAAACAGCA+AGG + chr7_1:65640931-65640950 Msa1031170:intron 35.0%
TTCAAAAACAGCAAGGACTT+AGG + chr7_1:65640938-65640957 Msa1031170:CDS 35.0%
GTTTATGGAATGCAGATGAT+TGG + chr7_1:65641002-65641021 Msa1031170:CDS 35.0%
TACAAAGGTTTCCACATTGA+TGG + chr7_1:65641082-65641101 Msa1031170:CDS 35.0%
ACAAAACTTCGCATTAACAG+AGG - chr7_1:65641116-65641135 None:intergenic 35.0%
CAGAAACTATTACCCAACTT+GGG + chr7_1:65640074-65640093 Msa1031170:CDS 35.0%
TATGATCAAAAGCCCAAGTT+GGG - chr7_1:65640089-65640108 None:intergenic 35.0%
ATATGATCAAAAGCCCAAGT+TGG - chr7_1:65640090-65640109 None:intergenic 35.0%
CTTCATCTTGATAAGTACAC+TGG + chr7_1:65640141-65640160 Msa1031170:intron 35.0%
!! TTTTCTATTTAGCTCGTGCT+CGG + chr7_1:65640188-65640207 Msa1031170:intron 35.0%
TCCAAAGGTTCATACTTGTT+TGG + chr7_1:65640408-65640427 Msa1031170:intron 35.0%
ACCAAACAAGTATGAACCTT+TGG - chr7_1:65640412-65640431 None:intergenic 35.0%
GACAAGGTAACAAAGAACAA+AGG + chr7_1:65640690-65640709 Msa1031170:intron 35.0%
TTCACAGATACTCCATTCTA+TGG + chr7_1:65640744-65640763 Msa1031170:intron 35.0%
CAAGTAGTACTTACACAATC+TGG - chr7_1:65640778-65640797 None:intergenic 35.0%
!! AAGAGTGTTCAAAAACAGCA+AGG + chr7_1:65640931-65640950 Msa1031170:intron 35.0%
TTCAAAAACAGCAAGGACTT+AGG + chr7_1:65640938-65640957 Msa1031170:CDS 35.0%
GTTTATGGAATGCAGATGAT+TGG + chr7_1:65641002-65641021 Msa1031170:CDS 35.0%
TACAAAGGTTTCCACATTGA+TGG + chr7_1:65641082-65641101 Msa1031170:CDS 35.0%
ACAAAACTTCGCATTAACAG+AGG - chr7_1:65641116-65641135 None:intergenic 35.0%
! AAGCCAGTTGATGTACCATT+TGG + chr7_1:65640051-65640070 Msa1031170:CDS 40.0%
GGGTAATAGTTTCTGCCAAA+TGG - chr7_1:65640069-65640088 None:intergenic 40.0%
GCAGAAACTATTACCCAACT+TGG + chr7_1:65640073-65640092 Msa1031170:CDS 40.0%
! ACGAGTTTAAAACTAGGGCA+TGG - chr7_1:65640337-65640356 None:intergenic 40.0%
!!! GGTACTGGTTTTCAATCCAA+AGG + chr7_1:65640393-65640412 Msa1031170:intron 40.0%
ATGAACATTAAGATGGTCCC+TGG + chr7_1:65640441-65640460 Msa1031170:intron 40.0%
CAAACAAATGTGTTCACTGG+TGG + chr7_1:65640668-65640687 Msa1031170:intron 40.0%
CTGGTACATGTTCCATAGAA+TGG - chr7_1:65640759-65640778 None:intergenic 40.0%
! GTGGTTTGGAGAAAACAGAT+TGG + chr7_1:65641035-65641054 Msa1031170:CDS 40.0%
AGGATTCACAACCATCAATG+TGG - chr7_1:65641096-65641115 None:intergenic 40.0%
AACACAGGGTAAAAGATGGT+GGG + chr7_1:65641138-65641157 Msa1031170:CDS 40.0%
GCATCAAGATCACGAAATTC+AGG - chr7_1:65641169-65641188 None:intergenic 40.0%
TCAATGGCGTAGACTAAGAT+GGG + chr7_1:65641192-65641211 Msa1031170:CDS 40.0%
! AAGCCAGTTGATGTACCATT+TGG + chr7_1:65640051-65640070 Msa1031170:CDS 40.0%
GGGTAATAGTTTCTGCCAAA+TGG - chr7_1:65640069-65640088 None:intergenic 40.0%
GCAGAAACTATTACCCAACT+TGG + chr7_1:65640073-65640092 Msa1031170:CDS 40.0%
! ACGAGTTTAAAACTAGGGCA+TGG - chr7_1:65640337-65640356 None:intergenic 40.0%
!!! GGTACTGGTTTTCAATCCAA+AGG + chr7_1:65640393-65640412 Msa1031170:intron 40.0%
ATGAACATTAAGATGGTCCC+TGG + chr7_1:65640441-65640460 Msa1031170:intron 40.0%
CAAACAAATGTGTTCACTGG+TGG + chr7_1:65640668-65640687 Msa1031170:intron 40.0%
CTGGTACATGTTCCATAGAA+TGG - chr7_1:65640759-65640778 None:intergenic 40.0%
! GTGGTTTGGAGAAAACAGAT+TGG + chr7_1:65641035-65641054 Msa1031170:CDS 40.0%
AGGATTCACAACCATCAATG+TGG - chr7_1:65641096-65641115 None:intergenic 40.0%
AACACAGGGTAAAAGATGGT+GGG + chr7_1:65641138-65641157 Msa1031170:CDS 40.0%
GCATCAAGATCACGAAATTC+AGG - chr7_1:65641169-65641188 None:intergenic 40.0%
TCAATGGCGTAGACTAAGAT+GGG + chr7_1:65641192-65641211 Msa1031170:CDS 40.0%
! TACATCAACTGGCTTACGTG+GGG - chr7_1:65640046-65640065 None:intergenic 45.0%
! GTACATCAACTGGCTTACGT+GGG - chr7_1:65640047-65640066 None:intergenic 45.0%
CTGCCAAATGGTACATCAAC+TGG - chr7_1:65640057-65640076 None:intergenic 45.0%
! AATGTGTTCACTGGTGGACA+AGG + chr7_1:65640674-65640693 Msa1031170:intron 45.0%
TTTCTCCAAACCACCTCTTG+TGG - chr7_1:65641029-65641048 None:intergenic 45.0%
! TCCAAAGCACCATTCATAGC+AGG + chr7_1:65641058-65641077 Msa1031170:CDS 45.0%
CCTTTGTAGCCTGCTATGAA+TGG - chr7_1:65641070-65641089 None:intergenic 45.0%
CCATTCATAGCAGGCTACAA+AGG + chr7_1:65641067-65641086 Msa1031170:CDS 45.0%
!! TGCGAAGTTTTGTGCAACAC+AGG + chr7_1:65641123-65641142 Msa1031170:CDS 45.0%
!! GCGAAGTTTTGTGCAACACA+GGG + chr7_1:65641124-65641143 Msa1031170:CDS 45.0%
GTGCAACACAGGGTAAAAGA+TGG + chr7_1:65641134-65641153 Msa1031170:CDS 45.0%
CAACACAGGGTAAAAGATGG+TGG + chr7_1:65641137-65641156 Msa1031170:CDS 45.0%
GTGATCTTGATGCTGCTCAA+TGG + chr7_1:65641176-65641195 Msa1031170:CDS 45.0%
CTCAATGGCGTAGACTAAGA+TGG + chr7_1:65641191-65641210 Msa1031170:CDS 45.0%
TTGCATTCTGGTGGAACTTG+AGG - chr7_1:65641268-65641287 None:intergenic 45.0%
! TCACGGTCTCTTTTGCATTC+TGG - chr7_1:65641280-65641299 None:intergenic 45.0%
! TACATCAACTGGCTTACGTG+GGG - chr7_1:65640046-65640065 None:intergenic 45.0%
! GTACATCAACTGGCTTACGT+GGG - chr7_1:65640047-65640066 None:intergenic 45.0%
CTGCCAAATGGTACATCAAC+TGG - chr7_1:65640057-65640076 None:intergenic 45.0%
! AATGTGTTCACTGGTGGACA+AGG + chr7_1:65640674-65640693 Msa1031170:intron 45.0%
TTTCTCCAAACCACCTCTTG+TGG - chr7_1:65641029-65641048 None:intergenic 45.0%
! TCCAAAGCACCATTCATAGC+AGG + chr7_1:65641058-65641077 Msa1031170:CDS 45.0%
CCTTTGTAGCCTGCTATGAA+TGG - chr7_1:65641070-65641089 None:intergenic 45.0%
CCATTCATAGCAGGCTACAA+AGG + chr7_1:65641067-65641086 Msa1031170:CDS 45.0%
!! TGCGAAGTTTTGTGCAACAC+AGG + chr7_1:65641123-65641142 Msa1031170:CDS 45.0%
!! GCGAAGTTTTGTGCAACACA+GGG + chr7_1:65641124-65641143 Msa1031170:CDS 45.0%
GTGCAACACAGGGTAAAAGA+TGG + chr7_1:65641134-65641153 Msa1031170:CDS 45.0%
CAACACAGGGTAAAAGATGG+TGG + chr7_1:65641137-65641156 Msa1031170:CDS 45.0%
GTGATCTTGATGCTGCTCAA+TGG + chr7_1:65641176-65641195 Msa1031170:CDS 45.0%
CTCAATGGCGTAGACTAAGA+TGG + chr7_1:65641191-65641210 Msa1031170:CDS 45.0%
TTGCATTCTGGTGGAACTTG+AGG - chr7_1:65641268-65641287 None:intergenic 45.0%
! TCACGGTCTCTTTTGCATTC+TGG - chr7_1:65641280-65641299 None:intergenic 45.0%
! ACATCAACTGGCTTACGTGG+GGG - chr7_1:65640045-65640064 None:intergenic 50.0%
! GGTACATCAACTGGCTTACG+TGG - chr7_1:65640048-65640067 None:intergenic 50.0%
GAGTTCTTGGGGAACAGAAC+AGG + chr7_1:65640629-65640648 Msa1031170:intron 50.0%
GCCTGCTATGAATGGTGCTT+TGG - chr7_1:65641062-65641081 None:intergenic 50.0%
! CGGTCTCTTTTGCATTCTGG+TGG - chr7_1:65641277-65641296 None:intergenic 50.0%
! ACATCAACTGGCTTACGTGG+GGG - chr7_1:65640045-65640064 None:intergenic 50.0%
! GGTACATCAACTGGCTTACG+TGG - chr7_1:65640048-65640067 None:intergenic 50.0%
GAGTTCTTGGGGAACAGAAC+AGG + chr7_1:65640629-65640648 Msa1031170:intron 50.0%
GCCTGCTATGAATGGTGCTT+TGG - chr7_1:65641062-65641081 None:intergenic 50.0%
! CGGTCTCTTTTGCATTCTGG+TGG - chr7_1:65641277-65641296 None:intergenic 50.0%
ATGGTCCCTGGTGATTCAGC+TGG + chr7_1:65640453-65640472 Msa1031170:intron 55.0%
CTGTGCCAGCTGAATCACCA+GGG - chr7_1:65640461-65640480 None:intergenic 55.0%
ACTGTGCCAGCTGAATCACC+AGG - chr7_1:65640462-65640481 None:intergenic 55.0%
GCAGATGATTGGGCCACAAG+AGG + chr7_1:65641013-65641032 Msa1031170:CDS 55.0%
GATGATTGGGCCACAAGAGG+TGG + chr7_1:65641016-65641035 Msa1031170:CDS 55.0%
TTGGGCCACAAGAGGTGGTT+TGG + chr7_1:65641021-65641040 Msa1031170:CDS 55.0%
ATGGTCCCTGGTGATTCAGC+TGG + chr7_1:65640453-65640472 Msa1031170:intron 55.0%
CTGTGCCAGCTGAATCACCA+GGG - chr7_1:65640461-65640480 None:intergenic 55.0%
ACTGTGCCAGCTGAATCACC+AGG - chr7_1:65640462-65640481 None:intergenic 55.0%
GCAGATGATTGGGCCACAAG+AGG + chr7_1:65641013-65641032 Msa1031170:CDS 55.0%
GATGATTGGGCCACAAGAGG+TGG + chr7_1:65641016-65641035 Msa1031170:CDS 55.0%
TTGGGCCACAAGAGGTGGTT+TGG + chr7_1:65641021-65641040 Msa1031170:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 65639976 65641306 65639976 ID=Msa1031170;Name=Msa1031170
chr7_1 mRNA 65639976 65641306 65639976 ID=Msa1031170-mRNA-1;Parent=Msa1031170;Name=Msa1031170-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|0|0|3|0|175
chr7_1 exon 65639976 65640123 65639976 ID=Msa1031170-mRNA-1:exon:14608;Parent=Msa1031170-mRNA-1
chr7_1 exon 65640907 65640913 65640907 ID=Msa1031170-mRNA-1:exon:14609;Parent=Msa1031170-mRNA-1
chr7_1 exon 65640934 65641306 65640934 ID=Msa1031170-mRNA-1:exon:14610;Parent=Msa1031170-mRNA-1
chr7_1 CDS 65639976 65640123 65639976 ID=Msa1031170-mRNA-1:cds;Parent=Msa1031170-mRNA-1
chr7_1 CDS 65640907 65640913 65640907 ID=Msa1031170-mRNA-1:cds;Parent=Msa1031170-mRNA-1
chr7_1 CDS 65640934 65641306 65640934 ID=Msa1031170-mRNA-1:cds;Parent=Msa1031170-mRNA-1
Gene Sequence

>Msa1031170

ATGAATTCTTCATTTTGGACTCTATGTTTGATTTTAGCATCACTAGTCTCTTTTTCATTATGTGCTCCCCCACGTAAGCCAGTTGATGTACCATTTGGCAGAAACTATTACCCAACTTGGGCTTTTGATCATATCAAATACTTCAATGATTTTTTAGTGTTCAAAAACAGCAAGGACTTAGGAGTAAGATTCCCATTTGACCAACCAATGAAAATATACAATAGTTTATGGAATGCAGATGATTGGGCCACAAGAGGTGGTTTGGAGAAAACAGATTGGTCCAAAGCACCATTCATAGCAGGCTACAAAGGTTTCCACATTGATGGTTGTGAATCCTCTGTTAATGCGAAGTTTTGTGCAACACAGGGTAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGACTAAGATGGGTGCGAGAAAAATACACCATTTACAACTATTGCACTGATAGGAAACGTTTGCCTCAAGTTCCACCAGAATGCAAAAGAGACCGTGACATTTAA

Protein sequence

>Msa1031170

MNSSFWTLCLILASLVSFSLCAPPRKPVDVPFGRNYYPTWAFDHIKYFNDFLVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAGYKGFHIDGCESSVNAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVREKYTIYNYCTDRKRLPQVPPECKRDRDI*