Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1031170 | XP_003624548.1 | 87.413 | 143 | 15 | 1 | 36 | 175 | 151 | 293 | 4.99e-84 | 259 |
Msa1031170 | XP_003624548.1 | 95.918 | 49 | 2 | 0 | 1 | 49 | 1 | 49 | 4.17e-23 | 103 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1031170 | sp|Q39857|XTH1_SOYBN | 82.639 | 144 | 21 | 2 | 36 | 175 | 153 | 296 | 9.93e-81 | 244 |
Msa1031170 | sp|Q39857|XTH1_SOYBN | 77.083 | 48 | 11 | 0 | 2 | 49 | 4 | 51 | 8.68e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1031170 | A0A6A6LJX5 | 63.014 | 219 | 37 | 1 | 1 | 175 | 1 | 219 | 2.68e-92 | 277 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0077560 | Msa1031170 | 0.814781 | 1.293372e-51 | -8.615850e-47 |
Msa0648970 | Msa1031170 | 0.810073 | 1.381639e-50 | -8.615850e-47 |
Msa0692790 | Msa1031170 | 0.800039 | 1.737859e-48 | -8.615850e-47 |
Msa0703950 | Msa1031170 | 0.825870 | 3.701939e-54 | -8.615850e-47 |
Msa0125360 | Msa1031170 | 0.802454 | 5.567096e-49 | -8.615850e-47 |
Msa0183710 | Msa1031170 | 0.806631 | 7.489589e-50 | -8.615850e-47 |
Msa1031170 | Msa1119440 | 0.882266 | 1.203486e-70 | -8.615850e-47 |
Msa1031170 | Msa1147700 | 0.800510 | 1.393289e-48 | -8.615850e-47 |
Msa1031170 | Msa1158200 | 0.832230 | 1.064107e-55 | -8.615850e-47 |
Msa1031170 | Msa1158210 | 0.830155 | 3.442605e-55 | -8.615850e-47 |
Msa1031170 | Msa1257570 | 0.817016 | 4.103145e-52 | -8.615850e-47 |
Msa1031170 | Msa1349690 | 0.801474 | 8.851964e-49 | -8.615850e-47 |
Msa1031170 | Msa1392740 | 0.803586 | 3.247718e-49 | -8.615850e-47 |
Msa1031170 | Msa1447100 | 0.802354 | 5.839379e-49 | -8.615850e-47 |
Msa1031170 | Msa1454500 | 0.807612 | 4.642207e-50 | -8.615850e-47 |
Msa0288620 | Msa1031170 | 0.807522 | 4.851811e-50 | -8.615850e-47 |
Msa0850690 | Msa1031170 | 0.800176 | 1.629861e-48 | -8.615850e-47 |
Msa0878280 | Msa1031170 | 0.821812 | 3.308243e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1031170 | MtrunA17_Chr7g0252621 | 87.413 | 143 | 15 | 1 | 36 | 175 | 151 | 293 | 4.59e-88 | 259 |
Msa1031170 | MtrunA17_Chr7g0252621 | 95.918 | 49 | 2 | 0 | 1 | 49 | 1 | 49 | 3.83e-27 | 103 |
Msa1031170 | MtrunA17_Chr7g0252631 | 86.713 | 143 | 16 | 1 | 36 | 175 | 151 | 293 | 1.21e-87 | 258 |
Msa1031170 | MtrunA17_Chr7g0252631 | 93.878 | 49 | 3 | 0 | 1 | 49 | 1 | 49 | 3.27e-26 | 101 |
Msa1031170 | MtrunA17_Chr7g0252601 | 75.524 | 143 | 32 | 1 | 36 | 175 | 151 | 293 | 1.56e-79 | 238 |
Msa1031170 | MtrunA17_Chr7g0252601 | 72.000 | 50 | 14 | 0 | 1 | 50 | 1 | 50 | 2.09e-17 | 77.4 |
Msa1031170 | MtrunA17_Chr6g0461731 | 77.622 | 143 | 29 | 1 | 36 | 175 | 174 | 316 | 3.78e-78 | 235 |
Msa1031170 | MtrunA17_Chr6g0461731 | 63.265 | 49 | 18 | 0 | 1 | 49 | 24 | 72 | 1.62e-15 | 72.8 |
Msa1031170 | MtrunA17_Chr6g0461761 | 76.224 | 143 | 31 | 1 | 36 | 175 | 151 | 293 | 2.53e-77 | 232 |
Msa1031170 | MtrunA17_Chr6g0461761 | 59.184 | 49 | 20 | 0 | 1 | 49 | 1 | 49 | 4.21e-13 | 65.9 |
Msa1031170 | MtrunA17_Chr2g0323161 | 48.062 | 129 | 59 | 2 | 53 | 173 | 162 | 290 | 4.39e-37 | 129 |
Msa1031170 | MtrunA17_Chr4g0072611 | 54.167 | 120 | 49 | 3 | 54 | 170 | 165 | 281 | 1.04e-36 | 128 |
Msa1031170 | MtrunA17_Chr4g0054431 | 44.604 | 139 | 73 | 2 | 34 | 169 | 150 | 287 | 1.47e-36 | 128 |
Msa1031170 | MtrunA17_Chr4g0054451 | 44.604 | 139 | 73 | 2 | 34 | 169 | 152 | 289 | 1.57e-36 | 128 |
Msa1031170 | MtrunA17_Chr4g0023961 | 47.200 | 125 | 58 | 2 | 53 | 169 | 164 | 288 | 1.29e-35 | 125 |
Msa1031170 | MtrunA17_Chr3g0122031 | 47.222 | 144 | 65 | 3 | 34 | 173 | 145 | 281 | 1.39e-34 | 122 |
Msa1031170 | MtrunA17_Chr3g0122021 | 47.222 | 144 | 65 | 3 | 34 | 173 | 145 | 281 | 1.57e-34 | 122 |
Msa1031170 | MtrunA17_Chr8g0377841 | 48.592 | 142 | 63 | 4 | 34 | 171 | 148 | 283 | 3.07e-34 | 122 |
Msa1031170 | MtrunA17_Chr4g0072681 | 52.033 | 123 | 54 | 2 | 54 | 171 | 123 | 245 | 1.17e-33 | 119 |
Msa1031170 | MtrunA17_Chr7g0258911 | 52.941 | 119 | 50 | 3 | 54 | 169 | 164 | 279 | 2.48e-33 | 119 |
Msa1031170 | MtrunA17_Chr6g0486581 | 41.958 | 143 | 76 | 4 | 34 | 169 | 141 | 283 | 3.42e-33 | 119 |
Msa1031170 | MtrunA17_Chr4g0072641 | 50.427 | 117 | 42 | 3 | 54 | 169 | 47 | 148 | 3.65e-33 | 115 |
Msa1031170 | MtrunA17_Chr4g0072671 | 50.000 | 126 | 51 | 3 | 54 | 171 | 166 | 287 | 4.07e-32 | 116 |
Msa1031170 | MtrunA17_Chr4g0072601 | 47.059 | 119 | 57 | 3 | 54 | 169 | 168 | 283 | 2.61e-31 | 114 |
Msa1031170 | MtrunA17_Chr4g0071341 | 48.760 | 121 | 53 | 3 | 54 | 169 | 165 | 281 | 6.59e-31 | 113 |
Msa1031170 | MtrunA17_Chr1g0206081 | 41.844 | 141 | 78 | 2 | 34 | 170 | 155 | 295 | 1.59e-30 | 112 |
Msa1031170 | MtrunA17_Chr1g0206681 | 40.426 | 141 | 79 | 3 | 34 | 169 | 151 | 291 | 3.05e-30 | 111 |
Msa1031170 | MtrunA17_Chr8g0390201 | 40.690 | 145 | 75 | 5 | 34 | 169 | 67 | 209 | 5.30e-30 | 108 |
Msa1031170 | MtrunA17_Chr2g0299061 | 47.200 | 125 | 53 | 3 | 54 | 169 | 166 | 286 | 5.83e-29 | 108 |
Msa1031170 | MtrunA17_Chr8g0340001 | 35.252 | 139 | 86 | 2 | 34 | 169 | 94 | 231 | 4.04e-26 | 99.8 |
Msa1031170 | MtrunA17_Chr8g0374231 | 45.098 | 102 | 55 | 1 | 70 | 170 | 1 | 102 | 6.15e-26 | 95.5 |
Msa1031170 | MtrunA17_Chr3g0096651 | 35.606 | 132 | 72 | 3 | 49 | 175 | 165 | 288 | 5.52e-22 | 89.7 |
Msa1031170 | MtrunA17_Chr8g0389641 | 38.525 | 122 | 31 | 2 | 53 | 173 | 168 | 246 | 3.43e-21 | 87.0 |
Msa1031170 | MtrunA17_Chr5g0443391 | 35.833 | 120 | 70 | 2 | 53 | 171 | 167 | 280 | 9.35e-20 | 84.0 |
Msa1031170 | MtrunA17_Chr7g0235541 | 36.441 | 118 | 69 | 3 | 53 | 170 | 97 | 208 | 1.43e-19 | 82.0 |
Msa1031170 | MtrunA17_Chr2g0303721 | 36.879 | 141 | 76 | 8 | 34 | 170 | 140 | 271 | 1.09e-17 | 78.2 |
Msa1031170 | MtrunA17_Chr4g0028221 | 34.314 | 102 | 63 | 2 | 68 | 169 | 207 | 304 | 4.02e-15 | 71.2 |
Msa1031170 | MtrunA17_Chr8g0365231 | 29.630 | 108 | 71 | 1 | 68 | 170 | 204 | 311 | 1.73e-14 | 69.7 |
Msa1031170 | MtrunA17_Chr2g0303861 | 34.615 | 130 | 76 | 6 | 34 | 159 | 147 | 271 | 5.36e-14 | 68.2 |
Msa1031170 | MtrunA17_Chr5g0410621 | 28.571 | 119 | 78 | 3 | 57 | 170 | 190 | 306 | 7.33e-14 | 68.2 |
Msa1031170 | MtrunA17_Chr7g0264731 | 34.906 | 106 | 64 | 3 | 64 | 169 | 191 | 291 | 1.28e-13 | 67.0 |
Msa1031170 | MtrunA17_Chr1g0180451 | 29.861 | 144 | 80 | 4 | 42 | 169 | 156 | 294 | 5.85e-13 | 65.5 |
Msa1031170 | MtrunA17_Chr2g0327411 | 28.777 | 139 | 90 | 4 | 34 | 169 | 177 | 309 | 9.02e-13 | 65.1 |
Msa1031170 | MtrunA17_Chr8g0382041 | 27.660 | 141 | 90 | 4 | 36 | 169 | 159 | 294 | 1.24e-11 | 62.0 |
Msa1031170 | MtrunA17_Chr8g0375981 | 30.769 | 117 | 72 | 4 | 57 | 169 | 179 | 290 | 6.31e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1031170 | AT5G13870.2 | 71.034 | 145 | 39 | 1 | 34 | 175 | 149 | 293 | 2.21e-74 | 225 |
Msa1031170 | AT5G13870.2 | 60.465 | 43 | 17 | 0 | 7 | 49 | 7 | 49 | 7.60e-13 | 65.5 |
Msa1031170 | AT5G13870.1 | 71.034 | 145 | 39 | 1 | 34 | 175 | 149 | 293 | 2.21e-74 | 225 |
Msa1031170 | AT5G13870.1 | 60.465 | 43 | 17 | 0 | 7 | 49 | 7 | 49 | 7.60e-13 | 65.5 |
Msa1031170 | AT5G13870.3 | 71.034 | 145 | 39 | 1 | 34 | 175 | 149 | 293 | 2.21e-74 | 225 |
Msa1031170 | AT5G13870.3 | 60.465 | 43 | 17 | 0 | 7 | 49 | 7 | 49 | 7.60e-13 | 65.5 |
Msa1031170 | AT2G06850.2 | 70.139 | 144 | 40 | 1 | 34 | 174 | 92 | 235 | 6.14e-73 | 219 |
Msa1031170 | AT2G06850.1 | 70.139 | 144 | 40 | 1 | 34 | 174 | 152 | 295 | 9.31e-73 | 221 |
Msa1031170 | AT3G23730.1 | 50.340 | 147 | 66 | 3 | 34 | 173 | 144 | 290 | 2.20e-41 | 140 |
Msa1031170 | AT5G65730.1 | 45.714 | 140 | 72 | 2 | 34 | 170 | 153 | 291 | 1.74e-39 | 135 |
Msa1031170 | AT4G14130.1 | 49.660 | 147 | 64 | 4 | 34 | 173 | 145 | 288 | 1.49e-38 | 133 |
Msa1031170 | AT4G03210.2 | 48.000 | 125 | 63 | 1 | 53 | 175 | 138 | 262 | 2.73e-37 | 129 |
Msa1031170 | AT4G03210.1 | 48.000 | 125 | 63 | 1 | 53 | 175 | 166 | 290 | 5.80e-37 | 129 |
Msa1031170 | AT5G57560.1 | 52.846 | 123 | 47 | 3 | 54 | 169 | 163 | 281 | 9.71e-37 | 128 |
Msa1031170 | AT5G57550.1 | 47.183 | 142 | 67 | 3 | 34 | 171 | 147 | 284 | 5.04e-36 | 127 |
Msa1031170 | AT5G48070.1 | 53.846 | 117 | 48 | 3 | 54 | 169 | 170 | 281 | 5.51e-35 | 124 |
Msa1031170 | AT4G37800.1 | 42.857 | 140 | 76 | 2 | 34 | 170 | 152 | 290 | 4.53e-34 | 122 |
Msa1031170 | AT4G30270.1 | 51.282 | 117 | 41 | 3 | 54 | 169 | 164 | 265 | 2.14e-33 | 119 |
Msa1031170 | AT4G25810.1 | 50.000 | 122 | 51 | 4 | 54 | 169 | 166 | 283 | 2.41e-33 | 120 |
Msa1031170 | AT4G30290.1 | 50.427 | 117 | 52 | 3 | 54 | 169 | 165 | 276 | 3.45e-33 | 119 |
Msa1031170 | AT1G65310.1 | 51.282 | 117 | 51 | 3 | 54 | 169 | 170 | 281 | 1.26e-32 | 118 |
Msa1031170 | AT1G65310.2 | 51.282 | 117 | 51 | 3 | 54 | 169 | 192 | 303 | 1.42e-32 | 118 |
Msa1031170 | AT4G30280.1 | 49.573 | 117 | 53 | 3 | 54 | 169 | 170 | 281 | 2.82e-32 | 117 |
Msa1031170 | AT5G57540.1 | 48.387 | 124 | 56 | 4 | 53 | 172 | 165 | 284 | 5.53e-31 | 114 |
Msa1031170 | AT5G57530.1 | 47.581 | 124 | 57 | 4 | 53 | 172 | 166 | 285 | 1.83e-29 | 109 |
Msa1031170 | AT2G14620.2 | 38.298 | 141 | 82 | 3 | 34 | 169 | 104 | 244 | 1.33e-28 | 106 |
Msa1031170 | AT1G11545.1 | 40.559 | 143 | 79 | 3 | 34 | 170 | 158 | 300 | 1.47e-28 | 107 |
Msa1031170 | AT2G14620.3 | 38.298 | 141 | 82 | 3 | 34 | 169 | 93 | 233 | 1.88e-28 | 106 |
Msa1031170 | AT2G18800.1 | 38.065 | 155 | 74 | 5 | 34 | 169 | 145 | 296 | 2.39e-28 | 107 |
Msa1031170 | AT2G14620.1 | 38.298 | 141 | 82 | 3 | 34 | 169 | 154 | 294 | 3.13e-28 | 107 |
Msa1031170 | AT4G28850.1 | 37.838 | 148 | 84 | 4 | 34 | 173 | 144 | 291 | 5.46e-28 | 106 |
Msa1031170 | AT4G13090.1 | 43.802 | 121 | 63 | 3 | 53 | 170 | 171 | 289 | 1.57e-27 | 105 |
Msa1031170 | AT4G25820.1 | 45.902 | 122 | 58 | 3 | 53 | 170 | 169 | 286 | 2.23e-26 | 101 |
Msa1031170 | AT4G13080.1 | 38.136 | 118 | 71 | 2 | 53 | 170 | 177 | 292 | 3.03e-24 | 96.3 |
Msa1031170 | AT3G25050.1 | 40.000 | 120 | 65 | 4 | 53 | 169 | 174 | 289 | 4.33e-22 | 90.5 |
Msa1031170 | AT1G32170.1 | 31.250 | 112 | 74 | 2 | 60 | 169 | 183 | 293 | 4.70e-16 | 74.7 |
Msa1031170 | AT3G44990.1 | 32.609 | 138 | 85 | 4 | 34 | 169 | 162 | 293 | 7.95e-15 | 70.9 |
Msa1031170 | AT1G10550.1 | 27.027 | 148 | 95 | 4 | 34 | 169 | 163 | 309 | 1.31e-13 | 67.8 |
Msa1031170 | AT1G14720.1 | 25.180 | 139 | 100 | 2 | 34 | 169 | 153 | 290 | 1.59e-13 | 67.4 |
Msa1031170 | AT2G36870.1 | 32.520 | 123 | 78 | 2 | 49 | 171 | 182 | 299 | 2.56e-13 | 66.6 |
Msa1031170 | AT2G01850.1 | 26.619 | 139 | 98 | 2 | 34 | 169 | 153 | 290 | 2.66e-12 | 63.9 |
Msa1031170 | AT4G18990.2 | 27.826 | 115 | 70 | 1 | 68 | 169 | 124 | 238 | 4.06e-12 | 63.2 |
Msa1031170 | AT4G18990.1 | 29.310 | 116 | 67 | 2 | 68 | 169 | 198 | 312 | 6.53e-12 | 63.2 |
Find 39 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAAATATACAATAGTTTA+TGG | 0.145009 | 7_1:+65640987 | Msa1031170:CDS |
ACAAAATGAATTCTTCATTT+TGG | 0.155254 | 7_1:+65639971 | None:intergenic |
ATCAGTGCAATAGTTGTAAA+TGG | 0.324527 | 7_1:-65641230 | None:intergenic |
GCATCAAGATCACGAAATTC+AGG | 0.366582 | 7_1:-65641166 | None:intergenic |
CTGCCAAATGGTACATCAAC+TGG | 0.374020 | 7_1:-65640054 | None:intergenic |
TTTACAACTATTGCACTGAT+AGG | 0.375154 | 7_1:+65641233 | Msa1031170:CDS |
TACAAAGGTTTCCACATTGA+TGG | 0.385031 | 7_1:+65641082 | Msa1031170:CDS |
GCCTGCTATGAATGGTGCTT+TGG | 0.386418 | 7_1:-65641059 | None:intergenic |
GTTTATGGAATGCAGATGAT+TGG | 0.387916 | 7_1:+65641002 | Msa1031170:CDS |
GATCATATCAAATACTTCAA+TGG | 0.398017 | 7_1:+65640102 | Msa1031170:CDS |
TTGGGCCACAAGAGGTGGTT+TGG | 0.402579 | 7_1:+65641021 | Msa1031170:CDS |
AAGCCAGTTGATGTACCATT+TGG | 0.454819 | 7_1:+65640051 | Msa1031170:CDS |
GGGTAATAGTTTCTGCCAAA+TGG | 0.460623 | 7_1:-65640066 | None:intergenic |
GCAGAAACTATTACCCAACT+TGG | 0.466236 | 7_1:+65640073 | Msa1031170:CDS |
CTCAATGGCGTAGACTAAGA+TGG | 0.467350 | 7_1:+65641191 | Msa1031170:CDS |
TTTATGGAATGCAGATGATT+GGG | 0.473254 | 7_1:+65641003 | Msa1031170:CDS |
GTGATCTTGATGCTGCTCAA+TGG | 0.483264 | 7_1:+65641176 | Msa1031170:CDS |
TTGCATTCTGGTGGAACTTG+AGG | 0.515049 | 7_1:-65641265 | None:intergenic |
TATGATCAAAAGCCCAAGTT+GGG | 0.522271 | 7_1:-65640086 | None:intergenic |
TTTCTCCAAACCACCTCTTG+TGG | 0.522277 | 7_1:-65641026 | None:intergenic |
GGTACATCAACTGGCTTACG+TGG | 0.534251 | 7_1:-65640045 | None:intergenic |
CAGAAACTATTACCCAACTT+GGG | 0.544276 | 7_1:+65640074 | Msa1031170:CDS |
CCTTTGTAGCCTGCTATGAA+TGG | 0.547075 | 7_1:-65641067 | None:intergenic |
ATATGATCAAAAGCCCAAGT+TGG | 0.560782 | 7_1:-65640087 | None:intergenic |
TCCAAAGCACCATTCATAGC+AGG | 0.568617 | 7_1:+65641058 | Msa1031170:CDS |
GTGCAACACAGGGTAAAAGA+TGG | 0.568853 | 7_1:+65641134 | Msa1031170:CDS |
GTGGTTTGGAGAAAACAGAT+TGG | 0.570318 | 7_1:+65641035 | Msa1031170:CDS |
CCATTCATAGCAGGCTACAA+AGG | 0.570384 | 7_1:+65641067 | Msa1031170:CDS |
GATGATTGGGCCACAAGAGG+TGG | 0.580281 | 7_1:+65641016 | Msa1031170:CDS |
TCAATGGCGTAGACTAAGAT+GGG | 0.582539 | 7_1:+65641192 | Msa1031170:CDS |
CAACACAGGGTAAAAGATGG+TGG | 0.587332 | 7_1:+65641137 | Msa1031170:CDS |
CGATGAACATTTAAATGTCA+CGG | 0.595421 | 7_1:-65641294 | None:intergenic |
GCAGATGATTGGGCCACAAG+AGG | 0.605501 | 7_1:+65641013 | Msa1031170:CDS |
GTACATCAACTGGCTTACGT+GGG | 0.619680 | 7_1:-65640044 | None:intergenic |
TACATCAACTGGCTTACGTG+GGG | 0.630956 | 7_1:-65640043 | None:intergenic |
ACAAAACTTCGCATTAACAG+AGG | 0.641098 | 7_1:-65641113 | None:intergenic |
AACACAGGGTAAAAGATGGT+GGG | 0.641505 | 7_1:+65641138 | Msa1031170:CDS |
ACATCAACTGGCTTACGTGG+GGG | 0.680439 | 7_1:-65640042 | None:intergenic |
AGGATTCACAACCATCAATG+TGG | 0.698159 | 7_1:-65641093 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAATTAATTACTCAAATT+TGG | - | chr7_1:65640860-65640879 | None:intergenic | 10.0% |
!! | ATTAATTAATTACTCAAATT+TGG | - | chr7_1:65640860-65640879 | None:intergenic | 10.0% |
!!! | TTTACTTTTTAGTTAGATTA+GGG | - | chr7_1:65640825-65640844 | None:intergenic | 15.0% |
!!! | TTTTACTTTTTAGTTAGATT+AGG | - | chr7_1:65640826-65640845 | None:intergenic | 15.0% |
!!! | AATTTTTTTGAAACTATGAT+TGG | + | chr7_1:65640877-65640896 | Msa1031170:intron | 15.0% |
!!! | AAACTATTGTATATTTTCAT+TGG | - | chr7_1:65640986-65641005 | None:intergenic | 15.0% |
!! | TGAAAATATACAATAGTTTA+TGG | + | chr7_1:65640987-65641006 | Msa1031170:CDS | 15.0% |
!!! | TTTACTTTTTAGTTAGATTA+GGG | - | chr7_1:65640825-65640844 | None:intergenic | 15.0% |
!!! | TTTTACTTTTTAGTTAGATT+AGG | - | chr7_1:65640826-65640845 | None:intergenic | 15.0% |
!!! | AATTTTTTTGAAACTATGAT+TGG | + | chr7_1:65640877-65640896 | Msa1031170:intron | 15.0% |
!!! | AAACTATTGTATATTTTCAT+TGG | - | chr7_1:65640986-65641005 | None:intergenic | 15.0% |
!! | TGAAAATATACAATAGTTTA+TGG | + | chr7_1:65640987-65641006 | Msa1031170:CDS | 15.0% |
!!! | TTTCTAACTACTTTTTTAAC+AGG | + | chr7_1:65640372-65640391 | Msa1031170:intron | 20.0% |
!! | ATGATAATAATTGTTGTGAT+TGG | + | chr7_1:65640554-65640573 | Msa1031170:intron | 20.0% |
!! | ACATTTGTTTGTAAAATGTA+AGG | - | chr7_1:65640659-65640678 | None:intergenic | 20.0% |
!! | CTAAAAAGTAAAAACTATTG+TGG | + | chr7_1:65640833-65640852 | Msa1031170:intron | 20.0% |
!!! | TATTGTATATTTTCATTGGT+TGG | - | chr7_1:65640982-65641001 | None:intergenic | 20.0% |
!!! | TTTCTAACTACTTTTTTAAC+AGG | + | chr7_1:65640372-65640391 | Msa1031170:intron | 20.0% |
!! | ATGATAATAATTGTTGTGAT+TGG | + | chr7_1:65640554-65640573 | Msa1031170:intron | 20.0% |
!! | ACATTTGTTTGTAAAATGTA+AGG | - | chr7_1:65640659-65640678 | None:intergenic | 20.0% |
!! | CTAAAAAGTAAAAACTATTG+TGG | + | chr7_1:65640833-65640852 | Msa1031170:intron | 20.0% |
!!! | TATTGTATATTTTCATTGGT+TGG | - | chr7_1:65640982-65641001 | None:intergenic | 20.0% |
! | GATCATATCAAATACTTCAA+TGG | + | chr7_1:65640102-65640121 | Msa1031170:CDS | 25.0% |
! | TTTCAGTATGAACATTAAGA+TGG | + | chr7_1:65640434-65640453 | Msa1031170:intron | 25.0% |
! | GATCATATCAAATACTTCAA+TGG | + | chr7_1:65640102-65640121 | Msa1031170:CDS | 25.0% |
! | TTTCAGTATGAACATTAAGA+TGG | + | chr7_1:65640434-65640453 | Msa1031170:intron | 25.0% |
CATATCAAATACTTCAATGG+TGG | + | chr7_1:65640105-65640124 | Msa1031170:intron | 30.0% | |
! | GTAGTACGAGTTTAAAACTA+GGG | - | chr7_1:65640342-65640361 | None:intergenic | 30.0% |
! | TGTAGTACGAGTTTAAAACT+AGG | - | chr7_1:65640343-65640362 | None:intergenic | 30.0% |
!!! | ACTACTTTTTTAACAGGTAC+TGG | + | chr7_1:65640378-65640397 | Msa1031170:intron | 30.0% |
!!! | TGAGATAGATTTTGAGTTCT+TGG | + | chr7_1:65640616-65640635 | Msa1031170:intron | 30.0% |
!!! | GAGATAGATTTTGAGTTCTT+GGG | + | chr7_1:65640617-65640636 | Msa1031170:intron | 30.0% |
!!! | AGATAGATTTTGAGTTCTTG+GGG | + | chr7_1:65640618-65640637 | Msa1031170:intron | 30.0% |
TTACAAACAAATGTGTTCAC+TGG | + | chr7_1:65640665-65640684 | Msa1031170:intron | 30.0% | |
AAGAACAAAGGATCTTTCTT+TGG | + | chr7_1:65640702-65640721 | Msa1031170:intron | 30.0% | |
! | TATCTGTGAAACTCTTTTGT+TGG | - | chr7_1:65640734-65640753 | None:intergenic | 30.0% |
!!! | ATTGGTTTGCAGATTTTTTG+TGG | + | chr7_1:65640895-65640914 | Msa1031170:intron | 30.0% |
!!! | CTGTTTTTGAACACTCTTAT+TGG | - | chr7_1:65640929-65640948 | None:intergenic | 30.0% |
!! | TTTTCATTGGTTGGTCAAAT+GGG | - | chr7_1:65640973-65640992 | None:intergenic | 30.0% |
!! | ATTTTCATTGGTTGGTCAAA+TGG | - | chr7_1:65640974-65640993 | None:intergenic | 30.0% |
TTTATGGAATGCAGATGATT+GGG | + | chr7_1:65641003-65641022 | Msa1031170:CDS | 30.0% | |
ATCAGTGCAATAGTTGTAAA+TGG | - | chr7_1:65641233-65641252 | None:intergenic | 30.0% | |
! | TTTACAACTATTGCACTGAT+AGG | + | chr7_1:65641233-65641252 | Msa1031170:CDS | 30.0% |
CATATCAAATACTTCAATGG+TGG | + | chr7_1:65640105-65640124 | Msa1031170:intron | 30.0% | |
! | GTAGTACGAGTTTAAAACTA+GGG | - | chr7_1:65640342-65640361 | None:intergenic | 30.0% |
! | TGTAGTACGAGTTTAAAACT+AGG | - | chr7_1:65640343-65640362 | None:intergenic | 30.0% |
!!! | ACTACTTTTTTAACAGGTAC+TGG | + | chr7_1:65640378-65640397 | Msa1031170:intron | 30.0% |
!!! | TGAGATAGATTTTGAGTTCT+TGG | + | chr7_1:65640616-65640635 | Msa1031170:intron | 30.0% |
!!! | GAGATAGATTTTGAGTTCTT+GGG | + | chr7_1:65640617-65640636 | Msa1031170:intron | 30.0% |
!!! | AGATAGATTTTGAGTTCTTG+GGG | + | chr7_1:65640618-65640637 | Msa1031170:intron | 30.0% |
TTACAAACAAATGTGTTCAC+TGG | + | chr7_1:65640665-65640684 | Msa1031170:intron | 30.0% | |
AAGAACAAAGGATCTTTCTT+TGG | + | chr7_1:65640702-65640721 | Msa1031170:intron | 30.0% | |
! | TATCTGTGAAACTCTTTTGT+TGG | - | chr7_1:65640734-65640753 | None:intergenic | 30.0% |
!!! | ATTGGTTTGCAGATTTTTTG+TGG | + | chr7_1:65640895-65640914 | Msa1031170:intron | 30.0% |
!!! | CTGTTTTTGAACACTCTTAT+TGG | - | chr7_1:65640929-65640948 | None:intergenic | 30.0% |
!! | TTTTCATTGGTTGGTCAAAT+GGG | - | chr7_1:65640973-65640992 | None:intergenic | 30.0% |
!! | ATTTTCATTGGTTGGTCAAA+TGG | - | chr7_1:65640974-65640993 | None:intergenic | 30.0% |
TTTATGGAATGCAGATGATT+GGG | + | chr7_1:65641003-65641022 | Msa1031170:CDS | 30.0% | |
ATCAGTGCAATAGTTGTAAA+TGG | - | chr7_1:65641233-65641252 | None:intergenic | 30.0% | |
! | TTTACAACTATTGCACTGAT+AGG | + | chr7_1:65641233-65641252 | Msa1031170:CDS | 30.0% |
CAGAAACTATTACCCAACTT+GGG | + | chr7_1:65640074-65640093 | Msa1031170:CDS | 35.0% | |
TATGATCAAAAGCCCAAGTT+GGG | - | chr7_1:65640089-65640108 | None:intergenic | 35.0% | |
ATATGATCAAAAGCCCAAGT+TGG | - | chr7_1:65640090-65640109 | None:intergenic | 35.0% | |
CTTCATCTTGATAAGTACAC+TGG | + | chr7_1:65640141-65640160 | Msa1031170:intron | 35.0% | |
!! | TTTTCTATTTAGCTCGTGCT+CGG | + | chr7_1:65640188-65640207 | Msa1031170:intron | 35.0% |
TCCAAAGGTTCATACTTGTT+TGG | + | chr7_1:65640408-65640427 | Msa1031170:intron | 35.0% | |
ACCAAACAAGTATGAACCTT+TGG | - | chr7_1:65640412-65640431 | None:intergenic | 35.0% | |
GACAAGGTAACAAAGAACAA+AGG | + | chr7_1:65640690-65640709 | Msa1031170:intron | 35.0% | |
TTCACAGATACTCCATTCTA+TGG | + | chr7_1:65640744-65640763 | Msa1031170:intron | 35.0% | |
CAAGTAGTACTTACACAATC+TGG | - | chr7_1:65640778-65640797 | None:intergenic | 35.0% | |
!! | AAGAGTGTTCAAAAACAGCA+AGG | + | chr7_1:65640931-65640950 | Msa1031170:intron | 35.0% |
TTCAAAAACAGCAAGGACTT+AGG | + | chr7_1:65640938-65640957 | Msa1031170:CDS | 35.0% | |
GTTTATGGAATGCAGATGAT+TGG | + | chr7_1:65641002-65641021 | Msa1031170:CDS | 35.0% | |
TACAAAGGTTTCCACATTGA+TGG | + | chr7_1:65641082-65641101 | Msa1031170:CDS | 35.0% | |
ACAAAACTTCGCATTAACAG+AGG | - | chr7_1:65641116-65641135 | None:intergenic | 35.0% | |
CAGAAACTATTACCCAACTT+GGG | + | chr7_1:65640074-65640093 | Msa1031170:CDS | 35.0% | |
TATGATCAAAAGCCCAAGTT+GGG | - | chr7_1:65640089-65640108 | None:intergenic | 35.0% | |
ATATGATCAAAAGCCCAAGT+TGG | - | chr7_1:65640090-65640109 | None:intergenic | 35.0% | |
CTTCATCTTGATAAGTACAC+TGG | + | chr7_1:65640141-65640160 | Msa1031170:intron | 35.0% | |
!! | TTTTCTATTTAGCTCGTGCT+CGG | + | chr7_1:65640188-65640207 | Msa1031170:intron | 35.0% |
TCCAAAGGTTCATACTTGTT+TGG | + | chr7_1:65640408-65640427 | Msa1031170:intron | 35.0% | |
ACCAAACAAGTATGAACCTT+TGG | - | chr7_1:65640412-65640431 | None:intergenic | 35.0% | |
GACAAGGTAACAAAGAACAA+AGG | + | chr7_1:65640690-65640709 | Msa1031170:intron | 35.0% | |
TTCACAGATACTCCATTCTA+TGG | + | chr7_1:65640744-65640763 | Msa1031170:intron | 35.0% | |
CAAGTAGTACTTACACAATC+TGG | - | chr7_1:65640778-65640797 | None:intergenic | 35.0% | |
!! | AAGAGTGTTCAAAAACAGCA+AGG | + | chr7_1:65640931-65640950 | Msa1031170:intron | 35.0% |
TTCAAAAACAGCAAGGACTT+AGG | + | chr7_1:65640938-65640957 | Msa1031170:CDS | 35.0% | |
GTTTATGGAATGCAGATGAT+TGG | + | chr7_1:65641002-65641021 | Msa1031170:CDS | 35.0% | |
TACAAAGGTTTCCACATTGA+TGG | + | chr7_1:65641082-65641101 | Msa1031170:CDS | 35.0% | |
ACAAAACTTCGCATTAACAG+AGG | - | chr7_1:65641116-65641135 | None:intergenic | 35.0% | |
! | AAGCCAGTTGATGTACCATT+TGG | + | chr7_1:65640051-65640070 | Msa1031170:CDS | 40.0% |
GGGTAATAGTTTCTGCCAAA+TGG | - | chr7_1:65640069-65640088 | None:intergenic | 40.0% | |
GCAGAAACTATTACCCAACT+TGG | + | chr7_1:65640073-65640092 | Msa1031170:CDS | 40.0% | |
! | ACGAGTTTAAAACTAGGGCA+TGG | - | chr7_1:65640337-65640356 | None:intergenic | 40.0% |
!!! | GGTACTGGTTTTCAATCCAA+AGG | + | chr7_1:65640393-65640412 | Msa1031170:intron | 40.0% |
ATGAACATTAAGATGGTCCC+TGG | + | chr7_1:65640441-65640460 | Msa1031170:intron | 40.0% | |
CAAACAAATGTGTTCACTGG+TGG | + | chr7_1:65640668-65640687 | Msa1031170:intron | 40.0% | |
CTGGTACATGTTCCATAGAA+TGG | - | chr7_1:65640759-65640778 | None:intergenic | 40.0% | |
! | GTGGTTTGGAGAAAACAGAT+TGG | + | chr7_1:65641035-65641054 | Msa1031170:CDS | 40.0% |
AGGATTCACAACCATCAATG+TGG | - | chr7_1:65641096-65641115 | None:intergenic | 40.0% | |
AACACAGGGTAAAAGATGGT+GGG | + | chr7_1:65641138-65641157 | Msa1031170:CDS | 40.0% | |
GCATCAAGATCACGAAATTC+AGG | - | chr7_1:65641169-65641188 | None:intergenic | 40.0% | |
TCAATGGCGTAGACTAAGAT+GGG | + | chr7_1:65641192-65641211 | Msa1031170:CDS | 40.0% | |
! | AAGCCAGTTGATGTACCATT+TGG | + | chr7_1:65640051-65640070 | Msa1031170:CDS | 40.0% |
GGGTAATAGTTTCTGCCAAA+TGG | - | chr7_1:65640069-65640088 | None:intergenic | 40.0% | |
GCAGAAACTATTACCCAACT+TGG | + | chr7_1:65640073-65640092 | Msa1031170:CDS | 40.0% | |
! | ACGAGTTTAAAACTAGGGCA+TGG | - | chr7_1:65640337-65640356 | None:intergenic | 40.0% |
!!! | GGTACTGGTTTTCAATCCAA+AGG | + | chr7_1:65640393-65640412 | Msa1031170:intron | 40.0% |
ATGAACATTAAGATGGTCCC+TGG | + | chr7_1:65640441-65640460 | Msa1031170:intron | 40.0% | |
CAAACAAATGTGTTCACTGG+TGG | + | chr7_1:65640668-65640687 | Msa1031170:intron | 40.0% | |
CTGGTACATGTTCCATAGAA+TGG | - | chr7_1:65640759-65640778 | None:intergenic | 40.0% | |
! | GTGGTTTGGAGAAAACAGAT+TGG | + | chr7_1:65641035-65641054 | Msa1031170:CDS | 40.0% |
AGGATTCACAACCATCAATG+TGG | - | chr7_1:65641096-65641115 | None:intergenic | 40.0% | |
AACACAGGGTAAAAGATGGT+GGG | + | chr7_1:65641138-65641157 | Msa1031170:CDS | 40.0% | |
GCATCAAGATCACGAAATTC+AGG | - | chr7_1:65641169-65641188 | None:intergenic | 40.0% | |
TCAATGGCGTAGACTAAGAT+GGG | + | chr7_1:65641192-65641211 | Msa1031170:CDS | 40.0% | |
! | TACATCAACTGGCTTACGTG+GGG | - | chr7_1:65640046-65640065 | None:intergenic | 45.0% |
! | GTACATCAACTGGCTTACGT+GGG | - | chr7_1:65640047-65640066 | None:intergenic | 45.0% |
CTGCCAAATGGTACATCAAC+TGG | - | chr7_1:65640057-65640076 | None:intergenic | 45.0% | |
! | AATGTGTTCACTGGTGGACA+AGG | + | chr7_1:65640674-65640693 | Msa1031170:intron | 45.0% |
TTTCTCCAAACCACCTCTTG+TGG | - | chr7_1:65641029-65641048 | None:intergenic | 45.0% | |
! | TCCAAAGCACCATTCATAGC+AGG | + | chr7_1:65641058-65641077 | Msa1031170:CDS | 45.0% |
CCTTTGTAGCCTGCTATGAA+TGG | - | chr7_1:65641070-65641089 | None:intergenic | 45.0% | |
CCATTCATAGCAGGCTACAA+AGG | + | chr7_1:65641067-65641086 | Msa1031170:CDS | 45.0% | |
!! | TGCGAAGTTTTGTGCAACAC+AGG | + | chr7_1:65641123-65641142 | Msa1031170:CDS | 45.0% |
!! | GCGAAGTTTTGTGCAACACA+GGG | + | chr7_1:65641124-65641143 | Msa1031170:CDS | 45.0% |
GTGCAACACAGGGTAAAAGA+TGG | + | chr7_1:65641134-65641153 | Msa1031170:CDS | 45.0% | |
CAACACAGGGTAAAAGATGG+TGG | + | chr7_1:65641137-65641156 | Msa1031170:CDS | 45.0% | |
GTGATCTTGATGCTGCTCAA+TGG | + | chr7_1:65641176-65641195 | Msa1031170:CDS | 45.0% | |
CTCAATGGCGTAGACTAAGA+TGG | + | chr7_1:65641191-65641210 | Msa1031170:CDS | 45.0% | |
TTGCATTCTGGTGGAACTTG+AGG | - | chr7_1:65641268-65641287 | None:intergenic | 45.0% | |
! | TCACGGTCTCTTTTGCATTC+TGG | - | chr7_1:65641280-65641299 | None:intergenic | 45.0% |
! | TACATCAACTGGCTTACGTG+GGG | - | chr7_1:65640046-65640065 | None:intergenic | 45.0% |
! | GTACATCAACTGGCTTACGT+GGG | - | chr7_1:65640047-65640066 | None:intergenic | 45.0% |
CTGCCAAATGGTACATCAAC+TGG | - | chr7_1:65640057-65640076 | None:intergenic | 45.0% | |
! | AATGTGTTCACTGGTGGACA+AGG | + | chr7_1:65640674-65640693 | Msa1031170:intron | 45.0% |
TTTCTCCAAACCACCTCTTG+TGG | - | chr7_1:65641029-65641048 | None:intergenic | 45.0% | |
! | TCCAAAGCACCATTCATAGC+AGG | + | chr7_1:65641058-65641077 | Msa1031170:CDS | 45.0% |
CCTTTGTAGCCTGCTATGAA+TGG | - | chr7_1:65641070-65641089 | None:intergenic | 45.0% | |
CCATTCATAGCAGGCTACAA+AGG | + | chr7_1:65641067-65641086 | Msa1031170:CDS | 45.0% | |
!! | TGCGAAGTTTTGTGCAACAC+AGG | + | chr7_1:65641123-65641142 | Msa1031170:CDS | 45.0% |
!! | GCGAAGTTTTGTGCAACACA+GGG | + | chr7_1:65641124-65641143 | Msa1031170:CDS | 45.0% |
GTGCAACACAGGGTAAAAGA+TGG | + | chr7_1:65641134-65641153 | Msa1031170:CDS | 45.0% | |
CAACACAGGGTAAAAGATGG+TGG | + | chr7_1:65641137-65641156 | Msa1031170:CDS | 45.0% | |
GTGATCTTGATGCTGCTCAA+TGG | + | chr7_1:65641176-65641195 | Msa1031170:CDS | 45.0% | |
CTCAATGGCGTAGACTAAGA+TGG | + | chr7_1:65641191-65641210 | Msa1031170:CDS | 45.0% | |
TTGCATTCTGGTGGAACTTG+AGG | - | chr7_1:65641268-65641287 | None:intergenic | 45.0% | |
! | TCACGGTCTCTTTTGCATTC+TGG | - | chr7_1:65641280-65641299 | None:intergenic | 45.0% |
! | ACATCAACTGGCTTACGTGG+GGG | - | chr7_1:65640045-65640064 | None:intergenic | 50.0% |
! | GGTACATCAACTGGCTTACG+TGG | - | chr7_1:65640048-65640067 | None:intergenic | 50.0% |
GAGTTCTTGGGGAACAGAAC+AGG | + | chr7_1:65640629-65640648 | Msa1031170:intron | 50.0% | |
GCCTGCTATGAATGGTGCTT+TGG | - | chr7_1:65641062-65641081 | None:intergenic | 50.0% | |
! | CGGTCTCTTTTGCATTCTGG+TGG | - | chr7_1:65641277-65641296 | None:intergenic | 50.0% |
! | ACATCAACTGGCTTACGTGG+GGG | - | chr7_1:65640045-65640064 | None:intergenic | 50.0% |
! | GGTACATCAACTGGCTTACG+TGG | - | chr7_1:65640048-65640067 | None:intergenic | 50.0% |
GAGTTCTTGGGGAACAGAAC+AGG | + | chr7_1:65640629-65640648 | Msa1031170:intron | 50.0% | |
GCCTGCTATGAATGGTGCTT+TGG | - | chr7_1:65641062-65641081 | None:intergenic | 50.0% | |
! | CGGTCTCTTTTGCATTCTGG+TGG | - | chr7_1:65641277-65641296 | None:intergenic | 50.0% |
ATGGTCCCTGGTGATTCAGC+TGG | + | chr7_1:65640453-65640472 | Msa1031170:intron | 55.0% | |
CTGTGCCAGCTGAATCACCA+GGG | - | chr7_1:65640461-65640480 | None:intergenic | 55.0% | |
ACTGTGCCAGCTGAATCACC+AGG | - | chr7_1:65640462-65640481 | None:intergenic | 55.0% | |
GCAGATGATTGGGCCACAAG+AGG | + | chr7_1:65641013-65641032 | Msa1031170:CDS | 55.0% | |
GATGATTGGGCCACAAGAGG+TGG | + | chr7_1:65641016-65641035 | Msa1031170:CDS | 55.0% | |
TTGGGCCACAAGAGGTGGTT+TGG | + | chr7_1:65641021-65641040 | Msa1031170:CDS | 55.0% | |
ATGGTCCCTGGTGATTCAGC+TGG | + | chr7_1:65640453-65640472 | Msa1031170:intron | 55.0% | |
CTGTGCCAGCTGAATCACCA+GGG | - | chr7_1:65640461-65640480 | None:intergenic | 55.0% | |
ACTGTGCCAGCTGAATCACC+AGG | - | chr7_1:65640462-65640481 | None:intergenic | 55.0% | |
GCAGATGATTGGGCCACAAG+AGG | + | chr7_1:65641013-65641032 | Msa1031170:CDS | 55.0% | |
GATGATTGGGCCACAAGAGG+TGG | + | chr7_1:65641016-65641035 | Msa1031170:CDS | 55.0% | |
TTGGGCCACAAGAGGTGGTT+TGG | + | chr7_1:65641021-65641040 | Msa1031170:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 65639976 | 65641306 | 65639976 | ID=Msa1031170;Name=Msa1031170 |
chr7_1 | mRNA | 65639976 | 65641306 | 65639976 | ID=Msa1031170-mRNA-1;Parent=Msa1031170;Name=Msa1031170-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|0|0|3|0|175 |
chr7_1 | exon | 65639976 | 65640123 | 65639976 | ID=Msa1031170-mRNA-1:exon:14608;Parent=Msa1031170-mRNA-1 |
chr7_1 | exon | 65640907 | 65640913 | 65640907 | ID=Msa1031170-mRNA-1:exon:14609;Parent=Msa1031170-mRNA-1 |
chr7_1 | exon | 65640934 | 65641306 | 65640934 | ID=Msa1031170-mRNA-1:exon:14610;Parent=Msa1031170-mRNA-1 |
chr7_1 | CDS | 65639976 | 65640123 | 65639976 | ID=Msa1031170-mRNA-1:cds;Parent=Msa1031170-mRNA-1 |
chr7_1 | CDS | 65640907 | 65640913 | 65640907 | ID=Msa1031170-mRNA-1:cds;Parent=Msa1031170-mRNA-1 |
chr7_1 | CDS | 65640934 | 65641306 | 65640934 | ID=Msa1031170-mRNA-1:cds;Parent=Msa1031170-mRNA-1 |
Gene Sequence |
Protein sequence |