Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798590 | sp|P49204|RS42_ARATH | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798590 | B7FL29 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0086160 | Msa0798590 | 0.842927 | 1.917584e-58 | -8.615850e-47 |
Msa0602900 | Msa0798590 | 0.864134 | 1.513240e-64 | -8.615850e-47 |
Msa0609120 | Msa0798590 | 0.805759 | 1.143096e-49 | -8.615850e-47 |
Msa0643960 | Msa0798590 | 0.857297 | 1.796373e-62 | -8.615850e-47 |
Msa0656450 | Msa0798590 | 0.801891 | 7.268800e-49 | -8.615850e-47 |
Msa0663400 | Msa0798590 | 0.818418 | 1.980911e-52 | -8.615850e-47 |
Msa0694400 | Msa0798590 | 0.809867 | 1.530012e-50 | -8.615850e-47 |
Msa0708630 | Msa0798590 | 0.833502 | 5.139568e-56 | -8.615850e-47 |
Msa0715970 | Msa0798590 | 0.886782 | 2.533408e-72 | -8.615850e-47 |
Msa0718560 | Msa0798590 | 0.820026 | 8.523907e-53 | -8.615850e-47 |
Msa0790450 | Msa0798590 | 0.824111 | 9.636451e-54 | -8.615850e-47 |
Msa0798590 | Msa0930360 | 0.803891 | 2.807226e-49 | -8.615850e-47 |
Msa0798590 | Msa0930890 | 0.810733 | 9.954993e-51 | -8.615850e-47 |
Msa0798590 | Msa1031740 | 0.817920 | 2.566913e-52 | -8.615850e-47 |
Msa0798590 | Msa1085850 | 0.863322 | 2.703226e-64 | -8.615850e-47 |
Msa0798590 | Msa1118790 | 0.833617 | 4.811909e-56 | -8.615850e-47 |
Msa0798590 | Msa1165210 | 0.846268 | 2.416290e-59 | -8.615850e-47 |
Msa0798590 | Msa1219760 | 0.805207 | 1.491989e-49 | -8.615850e-47 |
Msa0798590 | Msa1235950 | 0.811414 | 7.085606e-51 | -8.615850e-47 |
Msa0798590 | Msa1235980 | 0.808337 | 3.254413e-50 | -8.615850e-47 |
Msa0798590 | Msa1316100 | 0.803826 | 2.896562e-49 | -8.615850e-47 |
Msa0798590 | Msa1317390 | 0.807094 | 5.978283e-50 | -8.615850e-47 |
Msa0798590 | Msa1341780 | 0.839788 | 1.284755e-57 | -8.615850e-47 |
Msa0798590 | Msa1385480 | 0.833870 | 4.159568e-56 | -8.615850e-47 |
Msa0798590 | Msa1403520 | 0.854947 | 8.764197e-62 | -8.615850e-47 |
Msa0798590 | Msa1407550 | 0.804166 | 2.461405e-49 | -8.615850e-47 |
Msa0798590 | Msa1413570 | 0.802219 | 6.224967e-49 | -8.615850e-47 |
Msa0798590 | Msa1450560 | 0.826162 | 3.155556e-54 | -8.615850e-47 |
Msa0798590 | Msa1462580 | 0.832545 | 8.890955e-56 | -8.615850e-47 |
Msa0132460 | Msa0798590 | 0.831913 | 1.274827e-55 | -8.615850e-47 |
Msa0182050 | Msa0798590 | 0.832913 | 7.206370e-56 | -8.615850e-47 |
Msa0182100 | Msa0798590 | 0.861268 | 1.155733e-63 | -8.615850e-47 |
Msa0188740 | Msa0798590 | 0.828007 | 1.141770e-54 | -8.615850e-47 |
Msa0234850 | Msa0798590 | 0.803486 | 3.407563e-49 | -8.615850e-47 |
Msa0234900 | Msa0798590 | 0.804809 | 1.807160e-49 | -8.615850e-47 |
Msa0433060 | Msa0798590 | 0.859062 | 5.363561e-63 | -8.615850e-47 |
Msa0270160 | Msa0798590 | 0.865019 | 7.998032e-65 | -8.615850e-47 |
Msa0277600 | Msa0798590 | 0.821730 | 3.456247e-53 | -8.615850e-47 |
Msa0521730 | Msa0798590 | 0.809662 | 1.693717e-50 | -8.615850e-47 |
Msa0524680 | Msa0798590 | 0.861193 | 1.218641e-63 | -8.615850e-47 |
Msa0547920 | Msa0798590 | 0.850912 | 1.249397e-60 | -8.615850e-47 |
Msa0568380 | Msa0798590 | 0.824482 | 7.881054e-54 | -8.615850e-47 |
Msa0578010 | Msa0798590 | 0.820707 | 5.948159e-53 | -8.615850e-47 |
Msa0585570 | Msa0798590 | 0.813439 | 2.558068e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798590 | MtrunA17_Chr5g0403311 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
Msa0798590 | MtrunA17_Chr8g0357951 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
Msa0798590 | MtrunA17_Chr4g0005611 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
Msa0798590 | MtrunA17_Chr7g0243211 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798590 | AT5G07090.1 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
Msa0798590 | AT2G17360.1 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
Msa0798590 | AT5G58420.1 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
Msa0798590 | AT5G07090.3 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
Msa0798590 | AT5G07090.2 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
Msa0798590 | AT2G17360.2 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.71e-125 | 354 |
Find 111 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGAAAGCTCTCATTTGTCTT+AGG | 0.156777 | 5_3:-11340547 | None:intergenic |
TTCTTAGATACTGAATATTT+AGG | 0.208402 | 5_3:+11338871 | Msa0798590:five_prime_UTR |
TGAACGTCTTCTATCAATTT+TGG | 0.211537 | 5_3:+11341608 | Msa0798590:three_prime_UTR |
CACATAACCAGAGCTGAAAT+TGG | 0.251996 | 5_3:+11341783 | Msa0798590:three_prime_UTR |
GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 5_3:+11339782 | Msa0798590:CDS |
TTATCATTCAAGCTTAATAT+TGG | 0.302230 | 5_3:+11341697 | Msa0798590:three_prime_UTR |
CTAAGAAGCGTATGTGGATA+TGG | 0.312910 | 5_3:-11338855 | None:intergenic |
TCTTAGATACTGAATATTTA+GGG | 0.318461 | 5_3:+11338872 | Msa0798590:five_prime_UTR |
TTAGCCCTGATGACGGGGTC+TGG | 0.336130 | 5_3:-11341189 | None:intergenic |
TGTGGTCCAGATGAGGGTTT+AGG | 0.339811 | 5_3:-11339906 | None:intergenic |
AGGTTCGTTCAGTGCAATTT+GGG | 0.356395 | 5_3:+11341115 | Msa0798590:CDS |
AAGGTTCGTTCAGTGCAATT+TGG | 0.362570 | 5_3:+11341114 | Msa0798590:CDS |
TGCGACCATCATAGGTGTTC+AGG | 0.372486 | 5_3:-11341155 | None:intergenic |
TTCAAGCTTAATATTGGTAA+TGG | 0.377039 | 5_3:+11341703 | Msa0798590:three_prime_UTR |
GAAAGCTCTCATTTGTCTTA+GGG | 0.377197 | 5_3:-11340546 | None:intergenic |
GTTACCCAGACCCCGTCATC+AGG | 0.378657 | 5_3:+11341184 | Msa0798590:CDS |
GGTGACTGGTGGTAAGAATA+GGG | 0.379702 | 5_3:+11341287 | Msa0798590:CDS |
TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 5_3:-11339777 | None:intergenic |
AGGCTCTGAAGTTGGGCATT+AGG | 0.389710 | 5_3:-11341846 | None:intergenic |
ATTTCATCAAATTTGATGTT+GGG | 0.389801 | 5_3:+11341253 | Msa0798590:CDS |
GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 5_3:+11340061 | Msa0798590:CDS |
GACATCAAGGCTCTGAAGTT+GGG | 0.410054 | 5_3:-11341853 | None:intergenic |
TGGTGACTGGTGGTAAGAAT+AGG | 0.412505 | 5_3:+11341286 | Msa0798590:CDS |
CTCTGTAGCTGCTGCGAAGA+AGG | 0.424035 | 5_3:+11338945 | Msa0798590:five_prime_UTR |
AATGAGTGGGAGACATTCCC+TGG | 0.424661 | 5_3:-11339934 | None:intergenic |
CTGGTCAATGTGTTCACTAT+TGG | 0.427005 | 5_3:+11341405 | Msa0798590:CDS |
CTTTGAGACAATCCACGTTC+AGG | 0.430746 | 5_3:+11341353 | Msa0798590:CDS |
TAATTTAATACCCTTGCCCT+TGG | 0.435192 | 5_3:-11341457 | None:intergenic |
TAAAATCCCAATTTCAGCTC+TGG | 0.436937 | 5_3:-11341790 | None:intergenic |
TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 5_3:-11339778 | None:intergenic |
CAACGACATGTCCTTGTTGA+TGG | 0.438982 | 5_3:+11340020 | Msa0798590:CDS |
ACGGATAGTGCGACCATCAT+AGG | 0.439814 | 5_3:-11341163 | None:intergenic |
CCTCATCATCTCTGACTGAA+TGG | 0.453638 | 5_3:-11340603 | None:intergenic |
TGACATCAAGGCTCTGAAGT+TGG | 0.454372 | 5_3:-11341854 | None:intergenic |
GTGTCATTAGCCCTGATGAC+GGG | 0.456779 | 5_3:-11341195 | None:intergenic |
TCATGAGTTTGCAACTCGTC+TGG | 0.461260 | 5_3:+11341386 | Msa0798590:CDS |
CATTGGATGCTTGACAAATT+GGG | 0.462746 | 5_3:+11339783 | Msa0798590:CDS |
TGATGTTGGGAATGTAGTTA+TGG | 0.467410 | 5_3:+11341266 | Msa0798590:CDS |
CAAGAACAGAGAAAAGCATA+AGG | 0.471422 | 5_3:+11341326 | Msa0798590:CDS |
CCATCATAGGTGTTCAGGTA+TGG | 0.471971 | 5_3:-11341150 | None:intergenic |
TAGGCTCCTAAACCCTCATC+TGG | 0.473255 | 5_3:+11339900 | Msa0798590:intron |
CATCTGGACCACACAAGTCC+AGG | 0.474068 | 5_3:+11339916 | Msa0798590:CDS |
ATGGAGACGGAAACGGCCTT+TGG | 0.474465 | 5_3:-11340584 | None:intergenic |
GCTCTGGTTATGTGATCAAC+TGG | 0.476135 | 5_3:-11341774 | None:intergenic |
TAGCCCTGATGACGGGGTCT+GGG | 0.476922 | 5_3:-11341188 | None:intergenic |
TCAGAATAGCAATGACTTCA+CGG | 0.477884 | 5_3:-11339995 | None:intergenic |
TCCTTGTTGATGGCAAAGTC+AGG | 0.479245 | 5_3:+11340030 | Msa0798590:CDS |
GATTTCATCAAATTTGATGT+TGG | 0.482045 | 5_3:+11341252 | Msa0798590:CDS |
TATGTGATCAACTGGTATTA+TGG | 0.495590 | 5_3:-11341766 | None:intergenic |
ACATAACCAGAGCTGAAATT+GGG | 0.506961 | 5_3:+11341784 | Msa0798590:three_prime_UTR |
ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 5_3:+11340062 | Msa0798590:CDS |
TCATTGAGGAAGCGAGGAAG+AGG | 0.514249 | 5_3:+11341484 | Msa0798590:CDS |
TAAGAAGCGTATGTGGATAT+GGG | 0.518013 | 5_3:-11338854 | None:intergenic |
TTCATACCCATGAATCCAGC+TGG | 0.521349 | 5_3:-11340068 | None:intergenic |
CCATACCTGAACACCTATGA+TGG | 0.523294 | 5_3:+11341150 | Msa0798590:CDS |
CTGAACGTGGATTGTCTCAA+AGG | 0.529462 | 5_3:-11341352 | None:intergenic |
GGCTAATGACACTATCAAGC+TGG | 0.530045 | 5_3:+11341206 | Msa0798590:CDS |
GCCATGGGTTTCTCTTCCCA+AGG | 0.532349 | 5_3:+11341440 | Msa0798590:CDS |
GGTTTCTCTTCCCAAGGGCA+AGG | 0.533054 | 5_3:+11341446 | Msa0798590:CDS |
TGACACTATCAAGCTGGACC+TGG | 0.533062 | 5_3:+11341212 | Msa0798590:CDS |
TGATGACGGGGTCTGGGTAA+CGG | 0.533614 | 5_3:-11341182 | None:intergenic |
AATTTAATACCCTTGCCCTT+GGG | 0.533880 | 5_3:-11341456 | None:intergenic |
TTGGCAAGGGGACAAAGCCA+TGG | 0.543228 | 5_3:+11341424 | Msa0798590:CDS |
TCAGTGCAATTTGGGCAGAA+AGG | 0.544106 | 5_3:+11341123 | Msa0798590:CDS |
GGGAATGTAGTTATGGTGAC+TGG | 0.550052 | 5_3:+11341273 | Msa0798590:CDS |
GACTTGTGTGGTCCAGATGA+GGG | 0.550628 | 5_3:-11339912 | None:intergenic |
TATTAAATTAACTGTCATTG+AGG | 0.555206 | 5_3:+11341470 | Msa0798590:CDS |
CAATGTGTTCACTATTGGCA+AGG | 0.556225 | 5_3:+11341410 | Msa0798590:CDS |
CAGTATCTAAGAAGCGTATG+TGG | 0.568178 | 5_3:-11338861 | None:intergenic |
TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 5_3:-11339776 | None:intergenic |
GGACTTGTGTGGTCCAGATG+AGG | 0.570686 | 5_3:-11339913 | None:intergenic |
GTTTCTCTTCCCAAGGGCAA+GGG | 0.571738 | 5_3:+11341447 | Msa0798590:CDS |
TGGCAAGGGGACAAAGCCAT+GGG | 0.585049 | 5_3:+11341425 | Msa0798590:CDS |
TGACTGAATGGAGACGGAAA+CGG | 0.588177 | 5_3:-11340591 | None:intergenic |
CATCTCTGACTGAATGGAGA+CGG | 0.590006 | 5_3:-11340597 | None:intergenic |
AGTCAGAGATGATGAGGCAA+AGG | 0.591111 | 5_3:+11340609 | Msa0798590:CDS |
CCATTCAGTCAGAGATGATG+AGG | 0.595121 | 5_3:+11340603 | Msa0798590:CDS |
AAGAACAGAGAAAAGCATAA+GGG | 0.598361 | 5_3:+11341327 | Msa0798590:CDS |
AATGTGTTCACTATTGGCAA+GGG | 0.602196 | 5_3:+11341411 | Msa0798590:CDS |
ATCTGGACCACACAAGTCCA+GGG | 0.607205 | 5_3:+11339917 | Msa0798590:CDS |
GATCAACTGGTATTATGGTA+AGG | 0.613517 | 5_3:-11341761 | None:intergenic |
ATCCACGTTCAGGATGCCAC+TGG | 0.616221 | 5_3:+11341363 | Msa0798590:CDS |
GACCAGTGGCATCCTGAACG+TGG | 0.616751 | 5_3:-11341365 | None:intergenic |
CCATGGGTTTCTCTTCCCAA+GGG | 0.618310 | 5_3:+11341441 | Msa0798590:CDS |
TTTCGCAAGATCAGAATGAG+TGG | 0.619970 | 5_3:-11339948 | None:intergenic |
GTTTGAAGAAGCATTTGAAG+AGG | 0.620222 | 5_3:+11339745 | Msa0798590:CDS |
ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 5_3:+11340053 | Msa0798590:CDS |
CAACTGGTATTATGGTAAGG+TGG | 0.623332 | 5_3:-11341758 | None:intergenic |
TAACTGTCATTGAGGAAGCG+AGG | 0.626309 | 5_3:+11341478 | Msa0798590:CDS |
CATTGAGGAAGCGAGGAAGA+GGG | 0.627076 | 5_3:+11341485 | Msa0798590:CDS |
CGTTTGCTGTATGACACCAA+AGG | 0.627898 | 5_3:+11340568 | Msa0798590:CDS |
AGTGTCATTAGCCCTGATGA+CGG | 0.628940 | 5_3:-11341196 | None:intergenic |
ATGGCAGTTCAAGCTGTGCA+AGG | 0.628961 | 5_3:+11341095 | Msa0798590:intron |
CACTATCAAGCTGGACCTGG+AGG | 0.630561 | 5_3:+11341215 | Msa0798590:CDS |
GTGACTGGTGGTAAGAATAG+GGG | 0.630861 | 5_3:+11341288 | Msa0798590:CDS |
TTCGCAAGATCAGAATGAGT+GGG | 0.633304 | 5_3:-11339947 | None:intergenic |
TCCTGACTTTGCCATCAACA+AGG | 0.633379 | 5_3:-11340031 | None:intergenic |
TGTCATTAGCCCTGATGACG+GGG | 0.640624 | 5_3:-11341194 | None:intergenic |
GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 5_3:-11339775 | None:intergenic |
TTACCCAGACCCCGTCATCA+GGG | 0.650709 | 5_3:+11341185 | Msa0798590:CDS |
AGACATTCCCTGGACTTGTG+TGG | 0.650760 | 5_3:-11339924 | None:intergenic |
CTACAGAGTGGAGAGAGTGA+TGG | 0.653601 | 5_3:-11338930 | None:intergenic |
CCCTTGGGAAGAGAAACCCA+TGG | 0.658024 | 5_3:-11341441 | None:intergenic |
TGACTGGTGGTAAGAATAGG+GGG | 0.662881 | 5_3:+11341289 | Msa0798590:CDS |
ATGTGTTCACTATTGGCAAG+GGG | 0.666865 | 5_3:+11341412 | Msa0798590:CDS |
TCTTCGCAGCAGCTACAGAG+TGG | 0.669596 | 5_3:-11338942 | None:intergenic |
TTGTGAATGTAACAGGCGAG+GGG | 0.684781 | 5_3:+11339723 | Msa0798590:intron |
TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 5_3:+11339786 | Msa0798590:CDS |
AGTTGCAAACTCATGACCAG+TGG | 0.709942 | 5_3:-11341379 | None:intergenic |
GAGTGGAGAGAGTGATGGTG+CGG | 0.718303 | 5_3:-11338925 | None:intergenic |
AATGTAGTTATGGTGACTGG+TGG | 0.733221 | 5_3:+11341276 | Msa0798590:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATCATTATTTATTTTCT+GGG | + | chr5_3:11339124-11339143 | Msa0798590:intron | 10.0% |
!! | ACATTAAAATCAAATATAAA+CGG | - | chr5_3:11339216-11339235 | None:intergenic | 10.0% |
!!! | TATTTTAAAAAATACAATCA+AGG | - | chr5_3:11340498-11340517 | None:intergenic | 10.0% |
!!! | TTTTTTAAAATATTTGTATC+TGG | + | chr5_3:11340506-11340525 | Msa0798590:intron | 10.0% |
!!! | CTTTATCATTATTTATTTTC+TGG | + | chr5_3:11339123-11339142 | Msa0798590:intron | 15.0% |
!!! | GTAATTTGATTTATGATATT+AGG | + | chr5_3:11339184-11339203 | Msa0798590:intron | 15.0% |
!! | CAAATTCAAAAATTTATCTT+AGG | - | chr5_3:11339698-11339717 | None:intergenic | 15.0% |
!!! | CTAAGATAAATTTTTGAATT+TGG | + | chr5_3:11339696-11339715 | Msa0798590:intron | 15.0% |
!!! | ATTTTTTGCATGAAATTTAT+AGG | + | chr5_3:11339881-11339900 | Msa0798590:intron | 15.0% |
!! | ATATTATAATTAACATGTGA+TGG | + | chr5_3:11340882-11340901 | Msa0798590:intron | 15.0% |
!! | TTCTTAGATACTGAATATTT+AGG | + | chr5_3:11338871-11338890 | Msa0798590:five_prime_UTR | 20.0% |
!! | TCTTAGATACTGAATATTTA+GGG | + | chr5_3:11338872-11338891 | Msa0798590:five_prime_UTR | 20.0% |
!! | TATCATAAATCAAATTACAC+AGG | - | chr5_3:11339182-11339201 | None:intergenic | 20.0% |
!! | AAAAAATAAACCAATCCAAA+CGG | - | chr5_3:11339323-11339342 | None:intergenic | 20.0% |
!!! | ATCATATTTCAATTGATTCA+AGG | + | chr5_3:11339830-11339849 | Msa0798590:intron | 20.0% |
!! | ATTCTATGAATCATTTGATT+TGG | + | chr5_3:11340466-11340485 | Msa0798590:intron | 20.0% |
!!! | AGATTTATTTTATGTATGCA+TGG | + | chr5_3:11340960-11340979 | Msa0798590:intron | 20.0% |
!! | ATTTCATCAAATTTGATGTT+GGG | + | chr5_3:11341253-11341272 | Msa0798590:CDS | 20.0% |
!! | TATTAAATTAACTGTCATTG+AGG | + | chr5_3:11341470-11341489 | Msa0798590:CDS | 20.0% |
!! | TTATCATTCAAGCTTAATAT+TGG | + | chr5_3:11341697-11341716 | Msa0798590:three_prime_UTR | 20.0% |
!! | GTTTGTTGCGAAAATTTATT+TGG | + | chr5_3:11339146-11339165 | Msa0798590:intron | 25.0% |
!! | CGAAAATTTATTTGGAGTTT+AGG | + | chr5_3:11339154-11339173 | Msa0798590:intron | 25.0% |
! | TCAATCAAGCTCAAAATTAA+GGG | - | chr5_3:11339245-11339264 | None:intergenic | 25.0% |
! | CAAAAATAAGTCAATCCAAA+CGG | + | chr5_3:11339516-11339535 | Msa0798590:intron | 25.0% |
! | AAAAATAAGTCAATCCAAAC+GGG | + | chr5_3:11339517-11339536 | Msa0798590:intron | 25.0% |
!!! | GAACTTTGATTTTTGATCTT+AGG | + | chr5_3:11339560-11339579 | Msa0798590:intron | 25.0% |
! | TGATGTATTATAGCAAAGTA+TGG | + | chr5_3:11340217-11340236 | Msa0798590:intron | 25.0% |
!!! | GTTTTATCTGAAGTTAAAAG+TGG | + | chr5_3:11340289-11340308 | Msa0798590:intron | 25.0% |
! | ATAAAAAACATGCCAAATAC+TGG | - | chr5_3:11340364-11340383 | None:intergenic | 25.0% |
!!! | TTTGGCATGTTTTTTATTAC+TGG | + | chr5_3:11340367-11340386 | Msa0798590:intron | 25.0% |
! | AGAGATCAGTAATCAAATAA+AGG | - | chr5_3:11340637-11340656 | None:intergenic | 25.0% |
! | GATTTCATCAAATTTGATGT+TGG | + | chr5_3:11341252-11341271 | Msa0798590:CDS | 25.0% |
! | CTTGAATGATAACACAAAAA+AGG | - | chr5_3:11341689-11341708 | None:intergenic | 25.0% |
! | TTCAAGCTTAATATTGGTAA+TGG | + | chr5_3:11341703-11341722 | Msa0798590:three_prime_UTR | 25.0% |
AGAAGGAGAAAAATCGAAAA+TGG | + | chr5_3:11338962-11338981 | Msa0798590:exon | 30.0% | |
TTTGAATCTCATCTTCGTAA+TGG | + | chr5_3:11339023-11339042 | Msa0798590:intron | 30.0% | |
CTCAATCAAGCTCAAAATTA+AGG | - | chr5_3:11339246-11339265 | None:intergenic | 30.0% | |
TAAATAAGTCGATCCAAACA+TGG | + | chr5_3:11339288-11339307 | Msa0798590:intron | 30.0% | |
ATGTTAAACACACGACATAA+AGG | - | chr5_3:11339622-11339641 | None:intergenic | 30.0% | |
GCAAAAAATTACATCAGTCT+TGG | - | chr5_3:11339870-11339889 | None:intergenic | 30.0% | |
GTATTATAGCAAAGTATGGT+AGG | + | chr5_3:11340221-11340240 | Msa0798590:intron | 30.0% | |
TTAGACGATCTATTGTAACA+TGG | - | chr5_3:11340336-11340355 | None:intergenic | 30.0% | |
TAAATAAGTTGCCTGATCTT+CGG | + | chr5_3:11340428-11340447 | Msa0798590:intron | 30.0% | |
ATTCATAGAATTCTTTCACG+AGG | - | chr5_3:11340457-11340476 | None:intergenic | 30.0% | |
ATGGTGTAATTAACATGTGA+TGG | + | chr5_3:11340979-11340998 | Msa0798590:intron | 30.0% | |
! | AAGAACAGAGAAAAGCATAA+GGG | + | chr5_3:11341327-11341346 | Msa0798590:CDS | 30.0% |
! | TGAACGTCTTCTATCAATTT+TGG | + | chr5_3:11341608-11341627 | Msa0798590:three_prime_UTR | 30.0% |
TATGTGATCAACTGGTATTA+TGG | - | chr5_3:11341769-11341788 | None:intergenic | 30.0% | |
! | TAAGAAGCGTATGTGGATAT+GGG | - | chr5_3:11338857-11338876 | None:intergenic | 35.0% |
! | ACACAGTGTTGTTACTGAAA+TGG | + | chr5_3:11339087-11339106 | Msa0798590:intron | 35.0% |
TCGATCCAAACATGGTTTAA+TGG | + | chr5_3:11339296-11339315 | Msa0798590:intron | 35.0% | |
CGATCCAAACATGGTTTAAT+GGG | + | chr5_3:11339297-11339316 | Msa0798590:intron | 35.0% | |
GCATTATTCACAACATGTCA+AGG | + | chr5_3:11339384-11339403 | Msa0798590:intron | 35.0% | |
TGGATGTTTGTGAATGTAAC+AGG | + | chr5_3:11339716-11339735 | Msa0798590:intron | 35.0% | |
!! | GTTTGAAGAAGCATTTGAAG+AGG | + | chr5_3:11339745-11339764 | Msa0798590:CDS | 35.0% |
CATTGGATGCTTGACAAATT+GGG | + | chr5_3:11339783-11339802 | Msa0798590:CDS | 35.0% | |
TCAGAATAGCAATGACTTCA+CGG | - | chr5_3:11339998-11340017 | None:intergenic | 35.0% | |
TTTGGACAATCAACATGCTT+TGG | + | chr5_3:11340129-11340148 | Msa0798590:intron | 35.0% | |
AGCAAAGTATGGTAGGTAAA+TGG | + | chr5_3:11340228-11340247 | Msa0798590:intron | 35.0% | |
!! | TGAATCATTTGATTTGGCTG+TGG | + | chr5_3:11340472-11340491 | Msa0798590:intron | 35.0% |
GAAAGCTCTCATTTGTCTTA+GGG | - | chr5_3:11340549-11340568 | None:intergenic | 35.0% | |
AAGCCATTCAAAGTATGCTA+CGG | - | chr5_3:11340683-11340702 | None:intergenic | 35.0% | |
TTCCTTGTATGTGATGTACA+TGG | + | chr5_3:11341076-11341095 | Msa0798590:intron | 35.0% | |
TGATGTTGGGAATGTAGTTA+TGG | + | chr5_3:11341266-11341285 | Msa0798590:CDS | 35.0% | |
! | CAAGAACAGAGAAAAGCATA+AGG | + | chr5_3:11341326-11341345 | Msa0798590:CDS | 35.0% |
AATGTGTTCACTATTGGCAA+GGG | + | chr5_3:11341411-11341430 | Msa0798590:CDS | 35.0% | |
AATTTAATACCCTTGCCCTT+GGG | - | chr5_3:11341459-11341478 | None:intergenic | 35.0% | |
TAATTTAATACCCTTGCCCT+TGG | - | chr5_3:11341460-11341479 | None:intergenic | 35.0% | |
CAAAAAAGGACTACAAGTAG+AGG | - | chr5_3:11341675-11341694 | None:intergenic | 35.0% | |
GATCAACTGGTATTATGGTA+AGG | - | chr5_3:11341764-11341783 | None:intergenic | 35.0% | |
ACATAACCAGAGCTGAAATT+GGG | + | chr5_3:11341784-11341803 | Msa0798590:three_prime_UTR | 35.0% | |
TAAAATCCCAATTTCAGCTC+TGG | - | chr5_3:11341793-11341812 | None:intergenic | 35.0% | |
! | CTAAGAAGCGTATGTGGATA+TGG | - | chr5_3:11338858-11338877 | None:intergenic | 40.0% |
! | CAGTATCTAAGAAGCGTATG+TGG | - | chr5_3:11338864-11338883 | None:intergenic | 40.0% |
TTTGTGAATGTAACAGGCGA+GGG | + | chr5_3:11339722-11339741 | Msa0798590:intron | 40.0% | |
TTGTCAAGCATCCAATGCTT+GGG | - | chr5_3:11339780-11339799 | None:intergenic | 40.0% | |
TTTGTCAAGCATCCAATGCT+TGG | - | chr5_3:11339781-11339800 | None:intergenic | 40.0% | |
GCATTGGATGCTTGACAAAT+TGG | + | chr5_3:11339782-11339801 | Msa0798590:CDS | 40.0% | |
TTCGCAAGATCAGAATGAGT+GGG | - | chr5_3:11339950-11339969 | None:intergenic | 40.0% | |
TTTCGCAAGATCAGAATGAG+TGG | - | chr5_3:11339951-11339970 | None:intergenic | 40.0% | |
ACTTATCCAGCTGGATTCAT+GGG | + | chr5_3:11340062-11340081 | Msa0798590:CDS | 40.0% | |
CGTCTAAGTTCACCAGTATT+TGG | + | chr5_3:11340349-11340368 | Msa0798590:intron | 40.0% | |
CGAAAGCTCTCATTTGTCTT+AGG | - | chr5_3:11340550-11340569 | None:intergenic | 40.0% | |
ACTCCGTAGCATACTTTGAA+TGG | + | chr5_3:11340677-11340696 | Msa0798590:intron | 40.0% | |
GTGATGGTTGTTACTGTGAA+TGG | + | chr5_3:11340898-11340917 | Msa0798590:intron | 40.0% | |
TGCCATGTACATCACATACA+AGG | - | chr5_3:11341081-11341100 | None:intergenic | 40.0% | |
AAGGTTCGTTCAGTGCAATT+TGG | + | chr5_3:11341114-11341133 | Msa0798590:CDS | 40.0% | |
AGGTTCGTTCAGTGCAATTT+GGG | + | chr5_3:11341115-11341134 | Msa0798590:CDS | 40.0% | |
!!! | CAACAATCTTGTTTTCCTCC+AGG | - | chr5_3:11341233-11341252 | None:intergenic | 40.0% |
AATGTAGTTATGGTGACTGG+TGG | + | chr5_3:11341276-11341295 | Msa0798590:CDS | 40.0% | |
CTGGTCAATGTGTTCACTAT+TGG | + | chr5_3:11341405-11341424 | Msa0798590:CDS | 40.0% | |
CAATGTGTTCACTATTGGCA+AGG | + | chr5_3:11341410-11341429 | Msa0798590:CDS | 40.0% | |
ATGTGTTCACTATTGGCAAG+GGG | + | chr5_3:11341412-11341431 | Msa0798590:CDS | 40.0% | |
CAACTGGTATTATGGTAAGG+TGG | - | chr5_3:11341761-11341780 | None:intergenic | 40.0% | |
CACATAACCAGAGCTGAAAT+TGG | + | chr5_3:11341783-11341802 | Msa0798590:three_prime_UTR | 40.0% | |
ACGGCCCATTAAACCATGTT+TGG | - | chr5_3:11339304-11339323 | None:intergenic | 45.0% | |
! | ACATGGTTTAATGGGCCGTT+TGG | + | chr5_3:11339305-11339324 | Msa0798590:intron | 45.0% |
! | GTTTAATGGGCCGTTTGGAT+TGG | + | chr5_3:11339310-11339329 | Msa0798590:intron | 45.0% |
! | TCCAAACGGGTTCTTAGTGT+TGG | + | chr5_3:11339530-11339549 | Msa0798590:intron | 45.0% |
ACCAACACTAAGAACCCGTT+TGG | - | chr5_3:11339534-11339553 | None:intergenic | 45.0% | |
GTTTGTGAATGTAACAGGCG+AGG | + | chr5_3:11339721-11339740 | Msa0798590:intron | 45.0% | |
TTGTGAATGTAACAGGCGAG+GGG | + | chr5_3:11339723-11339742 | Msa0798590:intron | 45.0% | |
TGTCAAGCATCCAATGCTTG+GGG | - | chr5_3:11339779-11339798 | None:intergenic | 45.0% | |
TGGATGCTTGACAAATTGGG+TGG | + | chr5_3:11339786-11339805 | Msa0798590:CDS | 45.0% | |
CAACGACATGTCCTTGTTGA+TGG | + | chr5_3:11340020-11340039 | Msa0798590:CDS | 45.0% | |
!! | TCCTTGTTGATGGCAAAGTC+AGG | + | chr5_3:11340030-11340049 | Msa0798590:CDS | 45.0% |
TCCTGACTTTGCCATCAACA+AGG | - | chr5_3:11340034-11340053 | None:intergenic | 45.0% | |
ACTGACAAGACTTATCCAGC+TGG | + | chr5_3:11340053-11340072 | Msa0798590:CDS | 45.0% | |
GACTTATCCAGCTGGATTCA+TGG | + | chr5_3:11340061-11340080 | Msa0798590:CDS | 45.0% | |
TTCATACCCATGAATCCAGC+TGG | - | chr5_3:11340071-11340090 | None:intergenic | 45.0% | |
!! | CGTTTGCTGTATGACACCAA+AGG | + | chr5_3:11340568-11340587 | Msa0798590:CDS | 45.0% |
TGACTGAATGGAGACGGAAA+CGG | - | chr5_3:11340594-11340613 | None:intergenic | 45.0% | |
CATCTCTGACTGAATGGAGA+CGG | - | chr5_3:11340600-11340619 | None:intergenic | 45.0% | |
CCTCATCATCTCTGACTGAA+TGG | - | chr5_3:11340606-11340625 | None:intergenic | 45.0% | |
CCATTCAGTCAGAGATGATG+AGG | + | chr5_3:11340603-11340622 | Msa0798590:CDS | 45.0% | |
AGTCAGAGATGATGAGGCAA+AGG | + | chr5_3:11340609-11340628 | Msa0798590:CDS | 45.0% | |
TCAGTGCAATTTGGGCAGAA+AGG | + | chr5_3:11341123-11341142 | Msa0798590:CDS | 45.0% | |
CCATCATAGGTGTTCAGGTA+TGG | - | chr5_3:11341153-11341172 | None:intergenic | 45.0% | |
CCATACCTGAACACCTATGA+TGG | + | chr5_3:11341150-11341169 | Msa0798590:CDS | 45.0% | |
! | AGTGTCATTAGCCCTGATGA+CGG | - | chr5_3:11341199-11341218 | None:intergenic | 45.0% |
GGCTAATGACACTATCAAGC+TGG | + | chr5_3:11341206-11341225 | Msa0798590:CDS | 45.0% | |
GGGAATGTAGTTATGGTGAC+TGG | + | chr5_3:11341273-11341292 | Msa0798590:CDS | 45.0% | |
TGGTGACTGGTGGTAAGAAT+AGG | + | chr5_3:11341286-11341305 | Msa0798590:CDS | 45.0% | |
GGTGACTGGTGGTAAGAATA+GGG | + | chr5_3:11341287-11341306 | Msa0798590:CDS | 45.0% | |
GTGACTGGTGGTAAGAATAG+GGG | + | chr5_3:11341288-11341307 | Msa0798590:CDS | 45.0% | |
TGACTGGTGGTAAGAATAGG+GGG | + | chr5_3:11341289-11341308 | Msa0798590:CDS | 45.0% | |
! | CTGAACGTGGATTGTCTCAA+AGG | - | chr5_3:11341355-11341374 | None:intergenic | 45.0% |
!! | CTTTGAGACAATCCACGTTC+AGG | + | chr5_3:11341353-11341372 | Msa0798590:CDS | 45.0% |
AGTTGCAAACTCATGACCAG+TGG | - | chr5_3:11341382-11341401 | None:intergenic | 45.0% | |
TCATGAGTTTGCAACTCGTC+TGG | + | chr5_3:11341386-11341405 | Msa0798590:CDS | 45.0% | |
TAACTGTCATTGAGGAAGCG+AGG | + | chr5_3:11341478-11341497 | Msa0798590:CDS | 45.0% | |
GCTCTGGTTATGTGATCAAC+TGG | - | chr5_3:11341777-11341796 | None:intergenic | 45.0% | |
!!! | AATAATTGATTAATTTATTT+TGG | + | chr5_3:11340111-11340130 | Msa0798590:intron | 5.0% |
CTACAGAGTGGAGAGAGTGA+TGG | - | chr5_3:11338933-11338952 | None:intergenic | 50.0% | |
GTCAAGCATCCAATGCTTGG+GGG | - | chr5_3:11339778-11339797 | None:intergenic | 50.0% | |
TAGGCTCCTAAACCCTCATC+TGG | + | chr5_3:11339900-11339919 | Msa0798590:intron | 50.0% | |
TGTGGTCCAGATGAGGGTTT+AGG | - | chr5_3:11339909-11339928 | None:intergenic | 50.0% | |
GACTTGTGTGGTCCAGATGA+GGG | - | chr5_3:11339915-11339934 | None:intergenic | 50.0% | |
ATCTGGACCACACAAGTCCA+GGG | + | chr5_3:11339917-11339936 | Msa0798590:CDS | 50.0% | |
AGACATTCCCTGGACTTGTG+TGG | - | chr5_3:11339927-11339946 | None:intergenic | 50.0% | |
AATGAGTGGGAGACATTCCC+TGG | - | chr5_3:11339937-11339956 | None:intergenic | 50.0% | |
TCACGAGGATACCGAAGATC+AGG | - | chr5_3:11340442-11340461 | None:intergenic | 50.0% | |
ATGGCAGTTCAAGCTGTGCA+AGG | + | chr5_3:11341095-11341114 | Msa0798590:intron | 50.0% | |
TGCGACCATCATAGGTGTTC+AGG | - | chr5_3:11341158-11341177 | None:intergenic | 50.0% | |
ACGGATAGTGCGACCATCAT+AGG | - | chr5_3:11341166-11341185 | None:intergenic | 50.0% | |
! | TGTCATTAGCCCTGATGACG+GGG | - | chr5_3:11341197-11341216 | None:intergenic | 50.0% |
! | GTGTCATTAGCCCTGATGAC+GGG | - | chr5_3:11341198-11341217 | None:intergenic | 50.0% |
TGACACTATCAAGCTGGACC+TGG | + | chr5_3:11341212-11341231 | Msa0798590:CDS | 50.0% | |
CCATGGGTTTCTCTTCCCAA+GGG | + | chr5_3:11341441-11341460 | Msa0798590:CDS | 50.0% | |
GTTTCTCTTCCCAAGGGCAA+GGG | + | chr5_3:11341447-11341466 | Msa0798590:CDS | 50.0% | |
TCATTGAGGAAGCGAGGAAG+AGG | + | chr5_3:11341484-11341503 | Msa0798590:CDS | 50.0% | |
CATTGAGGAAGCGAGGAAGA+GGG | + | chr5_3:11341485-11341504 | Msa0798590:CDS | 50.0% | |
! | GAGTGGAGAGAGTGATGGTG+CGG | - | chr5_3:11338928-11338947 | None:intergenic | 55.0% |
TCTTCGCAGCAGCTACAGAG+TGG | - | chr5_3:11338945-11338964 | None:intergenic | 55.0% | |
CTCTGTAGCTGCTGCGAAGA+AGG | + | chr5_3:11338945-11338964 | Msa0798590:five_prime_UTR | 55.0% | |
GGACTTGTGTGGTCCAGATG+AGG | - | chr5_3:11339916-11339935 | None:intergenic | 55.0% | |
CATCTGGACCACACAAGTCC+AGG | + | chr5_3:11339916-11339935 | Msa0798590:CDS | 55.0% | |
ATGGAGACGGAAACGGCCTT+TGG | - | chr5_3:11340587-11340606 | None:intergenic | 55.0% | |
!! | TGATGACGGGGTCTGGGTAA+CGG | - | chr5_3:11341185-11341204 | None:intergenic | 55.0% |
TTACCCAGACCCCGTCATCA+GGG | + | chr5_3:11341185-11341204 | Msa0798590:CDS | 55.0% | |
CACTATCAAGCTGGACCTGG+AGG | + | chr5_3:11341215-11341234 | Msa0798590:CDS | 55.0% | |
! | GGTAAGAATAGGGGGCGTGT+TGG | + | chr5_3:11341297-11341316 | Msa0798590:CDS | 55.0% |
ATCCACGTTCAGGATGCCAC+TGG | + | chr5_3:11341363-11341382 | Msa0798590:CDS | 55.0% | |
TTGGCAAGGGGACAAAGCCA+TGG | + | chr5_3:11341424-11341443 | Msa0798590:CDS | 55.0% | |
TGGCAAGGGGACAAAGCCAT+GGG | + | chr5_3:11341425-11341444 | Msa0798590:CDS | 55.0% | |
GCCATGGGTTTCTCTTCCCA+AGG | + | chr5_3:11341440-11341459 | Msa0798590:CDS | 55.0% | |
CCCTTGGGAAGAGAAACCCA+TGG | - | chr5_3:11341444-11341463 | None:intergenic | 55.0% | |
GGTTTCTCTTCCCAAGGGCA+AGG | + | chr5_3:11341446-11341465 | Msa0798590:CDS | 55.0% | |
GGCTCAATGCCCCCAAGCAT+TGG | + | chr5_3:11339766-11339785 | Msa0798590:CDS | 60.0% | |
GTTACCCAGACCCCGTCATC+AGG | + | chr5_3:11341184-11341203 | Msa0798590:CDS | 60.0% | |
!! | TAGCCCTGATGACGGGGTCT+GGG | - | chr5_3:11341191-11341210 | None:intergenic | 60.0% |
!! | TTAGCCCTGATGACGGGGTC+TGG | - | chr5_3:11341192-11341211 | None:intergenic | 60.0% |
GACCAGTGGCATCCTGAACG+TGG | - | chr5_3:11341368-11341387 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 11338854 | 11341864 | 11338854 | ID=Msa0798590;Name=Msa0798590 |
chr5_3 | mRNA | 11338854 | 11341864 | 11338854 | ID=Msa0798590-mRNA-1;Parent=Msa0798590;Name=Msa0798590-mRNA-1;_AED=0.10;_eAED=0.10;_QI=127|1|1|1|0.8|0.66|6|305|265 |
chr5_3 | exon | 11338854 | 11338983 | 11338854 | ID=Msa0798590-mRNA-1:exon:4680;Parent=Msa0798590-mRNA-1 |
chr5_3 | exon | 11339738 | 11339815 | 11339738 | ID=Msa0798590-mRNA-1:exon:4681;Parent=Msa0798590-mRNA-1 |
chr5_3 | exon | 11339903 | 11340083 | 11339903 | ID=Msa0798590-mRNA-1:exon:4682;Parent=Msa0798590-mRNA-1 |
chr5_3 | exon | 11340533 | 11340630 | 11340533 | ID=Msa0798590-mRNA-1:exon:4683;Parent=Msa0798590-mRNA-1 |
chr5_3 | exon | 11341102 | 11341565 | 11341102 | ID=Msa0798590-mRNA-1:exon:4684;Parent=Msa0798590-mRNA-1 |
chr5_3 | exon | 11341586 | 11341864 | 11341586 | ID=Msa0798590-mRNA-1:exon:4685;Parent=Msa0798590-mRNA-1 |
chr5_3 | five_prime_UTR | 11338854 | 11338980 | 11338854 | ID=Msa0798590-mRNA-1:five_prime_utr;Parent=Msa0798590-mRNA-1 |
chr5_3 | CDS | 11338981 | 11338983 | 11338981 | ID=Msa0798590-mRNA-1:cds;Parent=Msa0798590-mRNA-1 |
chr5_3 | CDS | 11339738 | 11339815 | 11339738 | ID=Msa0798590-mRNA-1:cds;Parent=Msa0798590-mRNA-1 |
chr5_3 | CDS | 11339903 | 11340083 | 11339903 | ID=Msa0798590-mRNA-1:cds;Parent=Msa0798590-mRNA-1 |
chr5_3 | CDS | 11340533 | 11340630 | 11340533 | ID=Msa0798590-mRNA-1:cds;Parent=Msa0798590-mRNA-1 |
chr5_3 | CDS | 11341102 | 11341539 | 11341102 | ID=Msa0798590-mRNA-1:cds;Parent=Msa0798590-mRNA-1 |
chr5_3 | three_prime_UTR | 11341540 | 11341565 | 11341540 | ID=Msa0798590-mRNA-1:three_prime_utr;Parent=Msa0798590-mRNA-1 |
chr5_3 | three_prime_UTR | 11341586 | 11341864 | 11341586 | ID=Msa0798590-mRNA-1:three_prime_utr;Parent=Msa0798590-mRNA-1 |
Gene Sequence |
Protein sequence |