AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0798590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798590 MtrunA17_Chr5g0403311 100.000 265 0 0 1 265 1 265 0.0 545
Msa0798590 MtrunA17_Chr8g0357951 100.000 265 0 0 1 265 1 265 0.0 545
Msa0798590 MtrunA17_Chr4g0005611 95.094 265 12 1 1 265 1 264 0.0 518
Msa0798590 MtrunA17_Chr7g0243211 94.510 255 14 0 1 255 1 255 0.0 501
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798590 AT5G07090.1 90.458 262 25 0 1 262 1 262 0.0 506
Msa0798590 AT2G17360.1 90.769 260 24 0 1 260 1 260 0.0 504
Msa0798590 AT5G58420.1 90.076 262 26 0 1 262 1 262 0.0 503
Msa0798590 AT5G07090.3 89.754 244 25 0 19 262 1 244 2.51e-169 468
Msa0798590 AT5G07090.2 89.754 244 25 0 19 262 1 244 2.51e-169 468
Msa0798590 AT2G17360.2 91.160 181 16 0 1 181 1 181 2.71e-125 354

Find 111 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAAGCTCTCATTTGTCTT+AGG 0.156777 5_3:-11340547 None:intergenic
TTCTTAGATACTGAATATTT+AGG 0.208402 5_3:+11338871 Msa0798590:five_prime_UTR
TGAACGTCTTCTATCAATTT+TGG 0.211537 5_3:+11341608 Msa0798590:three_prime_UTR
CACATAACCAGAGCTGAAAT+TGG 0.251996 5_3:+11341783 Msa0798590:three_prime_UTR
GCATTGGATGCTTGACAAAT+TGG 0.267158 5_3:+11339782 Msa0798590:CDS
TTATCATTCAAGCTTAATAT+TGG 0.302230 5_3:+11341697 Msa0798590:three_prime_UTR
CTAAGAAGCGTATGTGGATA+TGG 0.312910 5_3:-11338855 None:intergenic
TCTTAGATACTGAATATTTA+GGG 0.318461 5_3:+11338872 Msa0798590:five_prime_UTR
TTAGCCCTGATGACGGGGTC+TGG 0.336130 5_3:-11341189 None:intergenic
TGTGGTCCAGATGAGGGTTT+AGG 0.339811 5_3:-11339906 None:intergenic
AGGTTCGTTCAGTGCAATTT+GGG 0.356395 5_3:+11341115 Msa0798590:CDS
AAGGTTCGTTCAGTGCAATT+TGG 0.362570 5_3:+11341114 Msa0798590:CDS
TGCGACCATCATAGGTGTTC+AGG 0.372486 5_3:-11341155 None:intergenic
TTCAAGCTTAATATTGGTAA+TGG 0.377039 5_3:+11341703 Msa0798590:three_prime_UTR
GAAAGCTCTCATTTGTCTTA+GGG 0.377197 5_3:-11340546 None:intergenic
GTTACCCAGACCCCGTCATC+AGG 0.378657 5_3:+11341184 Msa0798590:CDS
GGTGACTGGTGGTAAGAATA+GGG 0.379702 5_3:+11341287 Msa0798590:CDS
TTGTCAAGCATCCAATGCTT+GGG 0.386706 5_3:-11339777 None:intergenic
AGGCTCTGAAGTTGGGCATT+AGG 0.389710 5_3:-11341846 None:intergenic
ATTTCATCAAATTTGATGTT+GGG 0.389801 5_3:+11341253 Msa0798590:CDS
GACTTATCCAGCTGGATTCA+TGG 0.391447 5_3:+11340061 Msa0798590:CDS
GACATCAAGGCTCTGAAGTT+GGG 0.410054 5_3:-11341853 None:intergenic
TGGTGACTGGTGGTAAGAAT+AGG 0.412505 5_3:+11341286 Msa0798590:CDS
CTCTGTAGCTGCTGCGAAGA+AGG 0.424035 5_3:+11338945 Msa0798590:five_prime_UTR
AATGAGTGGGAGACATTCCC+TGG 0.424661 5_3:-11339934 None:intergenic
CTGGTCAATGTGTTCACTAT+TGG 0.427005 5_3:+11341405 Msa0798590:CDS
CTTTGAGACAATCCACGTTC+AGG 0.430746 5_3:+11341353 Msa0798590:CDS
TAATTTAATACCCTTGCCCT+TGG 0.435192 5_3:-11341457 None:intergenic
TAAAATCCCAATTTCAGCTC+TGG 0.436937 5_3:-11341790 None:intergenic
TTTGTCAAGCATCCAATGCT+TGG 0.437860 5_3:-11339778 None:intergenic
CAACGACATGTCCTTGTTGA+TGG 0.438982 5_3:+11340020 Msa0798590:CDS
ACGGATAGTGCGACCATCAT+AGG 0.439814 5_3:-11341163 None:intergenic
CCTCATCATCTCTGACTGAA+TGG 0.453638 5_3:-11340603 None:intergenic
TGACATCAAGGCTCTGAAGT+TGG 0.454372 5_3:-11341854 None:intergenic
GTGTCATTAGCCCTGATGAC+GGG 0.456779 5_3:-11341195 None:intergenic
TCATGAGTTTGCAACTCGTC+TGG 0.461260 5_3:+11341386 Msa0798590:CDS
CATTGGATGCTTGACAAATT+GGG 0.462746 5_3:+11339783 Msa0798590:CDS
TGATGTTGGGAATGTAGTTA+TGG 0.467410 5_3:+11341266 Msa0798590:CDS
CAAGAACAGAGAAAAGCATA+AGG 0.471422 5_3:+11341326 Msa0798590:CDS
CCATCATAGGTGTTCAGGTA+TGG 0.471971 5_3:-11341150 None:intergenic
TAGGCTCCTAAACCCTCATC+TGG 0.473255 5_3:+11339900 Msa0798590:intron
CATCTGGACCACACAAGTCC+AGG 0.474068 5_3:+11339916 Msa0798590:CDS
ATGGAGACGGAAACGGCCTT+TGG 0.474465 5_3:-11340584 None:intergenic
GCTCTGGTTATGTGATCAAC+TGG 0.476135 5_3:-11341774 None:intergenic
TAGCCCTGATGACGGGGTCT+GGG 0.476922 5_3:-11341188 None:intergenic
TCAGAATAGCAATGACTTCA+CGG 0.477884 5_3:-11339995 None:intergenic
TCCTTGTTGATGGCAAAGTC+AGG 0.479245 5_3:+11340030 Msa0798590:CDS
GATTTCATCAAATTTGATGT+TGG 0.482045 5_3:+11341252 Msa0798590:CDS
TATGTGATCAACTGGTATTA+TGG 0.495590 5_3:-11341766 None:intergenic
ACATAACCAGAGCTGAAATT+GGG 0.506961 5_3:+11341784 Msa0798590:three_prime_UTR
ACTTATCCAGCTGGATTCAT+GGG 0.514100 5_3:+11340062 Msa0798590:CDS
TCATTGAGGAAGCGAGGAAG+AGG 0.514249 5_3:+11341484 Msa0798590:CDS
TAAGAAGCGTATGTGGATAT+GGG 0.518013 5_3:-11338854 None:intergenic
TTCATACCCATGAATCCAGC+TGG 0.521349 5_3:-11340068 None:intergenic
CCATACCTGAACACCTATGA+TGG 0.523294 5_3:+11341150 Msa0798590:CDS
CTGAACGTGGATTGTCTCAA+AGG 0.529462 5_3:-11341352 None:intergenic
GGCTAATGACACTATCAAGC+TGG 0.530045 5_3:+11341206 Msa0798590:CDS
GCCATGGGTTTCTCTTCCCA+AGG 0.532349 5_3:+11341440 Msa0798590:CDS
GGTTTCTCTTCCCAAGGGCA+AGG 0.533054 5_3:+11341446 Msa0798590:CDS
TGACACTATCAAGCTGGACC+TGG 0.533062 5_3:+11341212 Msa0798590:CDS
TGATGACGGGGTCTGGGTAA+CGG 0.533614 5_3:-11341182 None:intergenic
AATTTAATACCCTTGCCCTT+GGG 0.533880 5_3:-11341456 None:intergenic
TTGGCAAGGGGACAAAGCCA+TGG 0.543228 5_3:+11341424 Msa0798590:CDS
TCAGTGCAATTTGGGCAGAA+AGG 0.544106 5_3:+11341123 Msa0798590:CDS
GGGAATGTAGTTATGGTGAC+TGG 0.550052 5_3:+11341273 Msa0798590:CDS
GACTTGTGTGGTCCAGATGA+GGG 0.550628 5_3:-11339912 None:intergenic
TATTAAATTAACTGTCATTG+AGG 0.555206 5_3:+11341470 Msa0798590:CDS
CAATGTGTTCACTATTGGCA+AGG 0.556225 5_3:+11341410 Msa0798590:CDS
CAGTATCTAAGAAGCGTATG+TGG 0.568178 5_3:-11338861 None:intergenic
TGTCAAGCATCCAATGCTTG+GGG 0.568821 5_3:-11339776 None:intergenic
GGACTTGTGTGGTCCAGATG+AGG 0.570686 5_3:-11339913 None:intergenic
GTTTCTCTTCCCAAGGGCAA+GGG 0.571738 5_3:+11341447 Msa0798590:CDS
TGGCAAGGGGACAAAGCCAT+GGG 0.585049 5_3:+11341425 Msa0798590:CDS
TGACTGAATGGAGACGGAAA+CGG 0.588177 5_3:-11340591 None:intergenic
CATCTCTGACTGAATGGAGA+CGG 0.590006 5_3:-11340597 None:intergenic
AGTCAGAGATGATGAGGCAA+AGG 0.591111 5_3:+11340609 Msa0798590:CDS
CCATTCAGTCAGAGATGATG+AGG 0.595121 5_3:+11340603 Msa0798590:CDS
AAGAACAGAGAAAAGCATAA+GGG 0.598361 5_3:+11341327 Msa0798590:CDS
AATGTGTTCACTATTGGCAA+GGG 0.602196 5_3:+11341411 Msa0798590:CDS
ATCTGGACCACACAAGTCCA+GGG 0.607205 5_3:+11339917 Msa0798590:CDS
GATCAACTGGTATTATGGTA+AGG 0.613517 5_3:-11341761 None:intergenic
ATCCACGTTCAGGATGCCAC+TGG 0.616221 5_3:+11341363 Msa0798590:CDS
GACCAGTGGCATCCTGAACG+TGG 0.616751 5_3:-11341365 None:intergenic
CCATGGGTTTCTCTTCCCAA+GGG 0.618310 5_3:+11341441 Msa0798590:CDS
TTTCGCAAGATCAGAATGAG+TGG 0.619970 5_3:-11339948 None:intergenic
GTTTGAAGAAGCATTTGAAG+AGG 0.620222 5_3:+11339745 Msa0798590:CDS
ACTGACAAGACTTATCCAGC+TGG 0.621794 5_3:+11340053 Msa0798590:CDS
CAACTGGTATTATGGTAAGG+TGG 0.623332 5_3:-11341758 None:intergenic
TAACTGTCATTGAGGAAGCG+AGG 0.626309 5_3:+11341478 Msa0798590:CDS
CATTGAGGAAGCGAGGAAGA+GGG 0.627076 5_3:+11341485 Msa0798590:CDS
CGTTTGCTGTATGACACCAA+AGG 0.627898 5_3:+11340568 Msa0798590:CDS
AGTGTCATTAGCCCTGATGA+CGG 0.628940 5_3:-11341196 None:intergenic
ATGGCAGTTCAAGCTGTGCA+AGG 0.628961 5_3:+11341095 Msa0798590:intron
CACTATCAAGCTGGACCTGG+AGG 0.630561 5_3:+11341215 Msa0798590:CDS
GTGACTGGTGGTAAGAATAG+GGG 0.630861 5_3:+11341288 Msa0798590:CDS
TTCGCAAGATCAGAATGAGT+GGG 0.633304 5_3:-11339947 None:intergenic
TCCTGACTTTGCCATCAACA+AGG 0.633379 5_3:-11340031 None:intergenic
TGTCATTAGCCCTGATGACG+GGG 0.640624 5_3:-11341194 None:intergenic
GTCAAGCATCCAATGCTTGG+GGG 0.650283 5_3:-11339775 None:intergenic
TTACCCAGACCCCGTCATCA+GGG 0.650709 5_3:+11341185 Msa0798590:CDS
AGACATTCCCTGGACTTGTG+TGG 0.650760 5_3:-11339924 None:intergenic
CTACAGAGTGGAGAGAGTGA+TGG 0.653601 5_3:-11338930 None:intergenic
CCCTTGGGAAGAGAAACCCA+TGG 0.658024 5_3:-11341441 None:intergenic
TGACTGGTGGTAAGAATAGG+GGG 0.662881 5_3:+11341289 Msa0798590:CDS
ATGTGTTCACTATTGGCAAG+GGG 0.666865 5_3:+11341412 Msa0798590:CDS
TCTTCGCAGCAGCTACAGAG+TGG 0.669596 5_3:-11338942 None:intergenic
TTGTGAATGTAACAGGCGAG+GGG 0.684781 5_3:+11339723 Msa0798590:intron
TGGATGCTTGACAAATTGGG+TGG 0.687057 5_3:+11339786 Msa0798590:CDS
AGTTGCAAACTCATGACCAG+TGG 0.709942 5_3:-11341379 None:intergenic
GAGTGGAGAGAGTGATGGTG+CGG 0.718303 5_3:-11338925 None:intergenic
AATGTAGTTATGGTGACTGG+TGG 0.733221 5_3:+11341276 Msa0798590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATCATTATTTATTTTCT+GGG + chr5_3:11339124-11339143 Msa0798590:intron 10.0%
!! ACATTAAAATCAAATATAAA+CGG - chr5_3:11339216-11339235 None:intergenic 10.0%
!!! TATTTTAAAAAATACAATCA+AGG - chr5_3:11340498-11340517 None:intergenic 10.0%
!!! TTTTTTAAAATATTTGTATC+TGG + chr5_3:11340506-11340525 Msa0798590:intron 10.0%
!!! CTTTATCATTATTTATTTTC+TGG + chr5_3:11339123-11339142 Msa0798590:intron 15.0%
!!! GTAATTTGATTTATGATATT+AGG + chr5_3:11339184-11339203 Msa0798590:intron 15.0%
!! CAAATTCAAAAATTTATCTT+AGG - chr5_3:11339698-11339717 None:intergenic 15.0%
!!! CTAAGATAAATTTTTGAATT+TGG + chr5_3:11339696-11339715 Msa0798590:intron 15.0%
!!! ATTTTTTGCATGAAATTTAT+AGG + chr5_3:11339881-11339900 Msa0798590:intron 15.0%
!! ATATTATAATTAACATGTGA+TGG + chr5_3:11340882-11340901 Msa0798590:intron 15.0%
!! TTCTTAGATACTGAATATTT+AGG + chr5_3:11338871-11338890 Msa0798590:five_prime_UTR 20.0%
!! TCTTAGATACTGAATATTTA+GGG + chr5_3:11338872-11338891 Msa0798590:five_prime_UTR 20.0%
!! TATCATAAATCAAATTACAC+AGG - chr5_3:11339182-11339201 None:intergenic 20.0%
!! AAAAAATAAACCAATCCAAA+CGG - chr5_3:11339323-11339342 None:intergenic 20.0%
!!! ATCATATTTCAATTGATTCA+AGG + chr5_3:11339830-11339849 Msa0798590:intron 20.0%
!! ATTCTATGAATCATTTGATT+TGG + chr5_3:11340466-11340485 Msa0798590:intron 20.0%
!!! AGATTTATTTTATGTATGCA+TGG + chr5_3:11340960-11340979 Msa0798590:intron 20.0%
!! ATTTCATCAAATTTGATGTT+GGG + chr5_3:11341253-11341272 Msa0798590:CDS 20.0%
!! TATTAAATTAACTGTCATTG+AGG + chr5_3:11341470-11341489 Msa0798590:CDS 20.0%
!! TTATCATTCAAGCTTAATAT+TGG + chr5_3:11341697-11341716 Msa0798590:three_prime_UTR 20.0%
!! GTTTGTTGCGAAAATTTATT+TGG + chr5_3:11339146-11339165 Msa0798590:intron 25.0%
!! CGAAAATTTATTTGGAGTTT+AGG + chr5_3:11339154-11339173 Msa0798590:intron 25.0%
! TCAATCAAGCTCAAAATTAA+GGG - chr5_3:11339245-11339264 None:intergenic 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr5_3:11339516-11339535 Msa0798590:intron 25.0%
! AAAAATAAGTCAATCCAAAC+GGG + chr5_3:11339517-11339536 Msa0798590:intron 25.0%
!!! GAACTTTGATTTTTGATCTT+AGG + chr5_3:11339560-11339579 Msa0798590:intron 25.0%
! TGATGTATTATAGCAAAGTA+TGG + chr5_3:11340217-11340236 Msa0798590:intron 25.0%
!!! GTTTTATCTGAAGTTAAAAG+TGG + chr5_3:11340289-11340308 Msa0798590:intron 25.0%
! ATAAAAAACATGCCAAATAC+TGG - chr5_3:11340364-11340383 None:intergenic 25.0%
!!! TTTGGCATGTTTTTTATTAC+TGG + chr5_3:11340367-11340386 Msa0798590:intron 25.0%
! AGAGATCAGTAATCAAATAA+AGG - chr5_3:11340637-11340656 None:intergenic 25.0%
! GATTTCATCAAATTTGATGT+TGG + chr5_3:11341252-11341271 Msa0798590:CDS 25.0%
! CTTGAATGATAACACAAAAA+AGG - chr5_3:11341689-11341708 None:intergenic 25.0%
! TTCAAGCTTAATATTGGTAA+TGG + chr5_3:11341703-11341722 Msa0798590:three_prime_UTR 25.0%
AGAAGGAGAAAAATCGAAAA+TGG + chr5_3:11338962-11338981 Msa0798590:exon 30.0%
TTTGAATCTCATCTTCGTAA+TGG + chr5_3:11339023-11339042 Msa0798590:intron 30.0%
CTCAATCAAGCTCAAAATTA+AGG - chr5_3:11339246-11339265 None:intergenic 30.0%
TAAATAAGTCGATCCAAACA+TGG + chr5_3:11339288-11339307 Msa0798590:intron 30.0%
ATGTTAAACACACGACATAA+AGG - chr5_3:11339622-11339641 None:intergenic 30.0%
GCAAAAAATTACATCAGTCT+TGG - chr5_3:11339870-11339889 None:intergenic 30.0%
GTATTATAGCAAAGTATGGT+AGG + chr5_3:11340221-11340240 Msa0798590:intron 30.0%
TTAGACGATCTATTGTAACA+TGG - chr5_3:11340336-11340355 None:intergenic 30.0%
TAAATAAGTTGCCTGATCTT+CGG + chr5_3:11340428-11340447 Msa0798590:intron 30.0%
ATTCATAGAATTCTTTCACG+AGG - chr5_3:11340457-11340476 None:intergenic 30.0%
ATGGTGTAATTAACATGTGA+TGG + chr5_3:11340979-11340998 Msa0798590:intron 30.0%
! AAGAACAGAGAAAAGCATAA+GGG + chr5_3:11341327-11341346 Msa0798590:CDS 30.0%
! TGAACGTCTTCTATCAATTT+TGG + chr5_3:11341608-11341627 Msa0798590:three_prime_UTR 30.0%
TATGTGATCAACTGGTATTA+TGG - chr5_3:11341769-11341788 None:intergenic 30.0%
! TAAGAAGCGTATGTGGATAT+GGG - chr5_3:11338857-11338876 None:intergenic 35.0%
! ACACAGTGTTGTTACTGAAA+TGG + chr5_3:11339087-11339106 Msa0798590:intron 35.0%
TCGATCCAAACATGGTTTAA+TGG + chr5_3:11339296-11339315 Msa0798590:intron 35.0%
CGATCCAAACATGGTTTAAT+GGG + chr5_3:11339297-11339316 Msa0798590:intron 35.0%
GCATTATTCACAACATGTCA+AGG + chr5_3:11339384-11339403 Msa0798590:intron 35.0%
TGGATGTTTGTGAATGTAAC+AGG + chr5_3:11339716-11339735 Msa0798590:intron 35.0%
!! GTTTGAAGAAGCATTTGAAG+AGG + chr5_3:11339745-11339764 Msa0798590:CDS 35.0%
CATTGGATGCTTGACAAATT+GGG + chr5_3:11339783-11339802 Msa0798590:CDS 35.0%
TCAGAATAGCAATGACTTCA+CGG - chr5_3:11339998-11340017 None:intergenic 35.0%
TTTGGACAATCAACATGCTT+TGG + chr5_3:11340129-11340148 Msa0798590:intron 35.0%
AGCAAAGTATGGTAGGTAAA+TGG + chr5_3:11340228-11340247 Msa0798590:intron 35.0%
!! TGAATCATTTGATTTGGCTG+TGG + chr5_3:11340472-11340491 Msa0798590:intron 35.0%
GAAAGCTCTCATTTGTCTTA+GGG - chr5_3:11340549-11340568 None:intergenic 35.0%
AAGCCATTCAAAGTATGCTA+CGG - chr5_3:11340683-11340702 None:intergenic 35.0%
TTCCTTGTATGTGATGTACA+TGG + chr5_3:11341076-11341095 Msa0798590:intron 35.0%
TGATGTTGGGAATGTAGTTA+TGG + chr5_3:11341266-11341285 Msa0798590:CDS 35.0%
! CAAGAACAGAGAAAAGCATA+AGG + chr5_3:11341326-11341345 Msa0798590:CDS 35.0%
AATGTGTTCACTATTGGCAA+GGG + chr5_3:11341411-11341430 Msa0798590:CDS 35.0%
AATTTAATACCCTTGCCCTT+GGG - chr5_3:11341459-11341478 None:intergenic 35.0%
TAATTTAATACCCTTGCCCT+TGG - chr5_3:11341460-11341479 None:intergenic 35.0%
CAAAAAAGGACTACAAGTAG+AGG - chr5_3:11341675-11341694 None:intergenic 35.0%
GATCAACTGGTATTATGGTA+AGG - chr5_3:11341764-11341783 None:intergenic 35.0%
ACATAACCAGAGCTGAAATT+GGG + chr5_3:11341784-11341803 Msa0798590:three_prime_UTR 35.0%
TAAAATCCCAATTTCAGCTC+TGG - chr5_3:11341793-11341812 None:intergenic 35.0%
! CTAAGAAGCGTATGTGGATA+TGG - chr5_3:11338858-11338877 None:intergenic 40.0%
! CAGTATCTAAGAAGCGTATG+TGG - chr5_3:11338864-11338883 None:intergenic 40.0%
TTTGTGAATGTAACAGGCGA+GGG + chr5_3:11339722-11339741 Msa0798590:intron 40.0%
TTGTCAAGCATCCAATGCTT+GGG - chr5_3:11339780-11339799 None:intergenic 40.0%
TTTGTCAAGCATCCAATGCT+TGG - chr5_3:11339781-11339800 None:intergenic 40.0%
GCATTGGATGCTTGACAAAT+TGG + chr5_3:11339782-11339801 Msa0798590:CDS 40.0%
TTCGCAAGATCAGAATGAGT+GGG - chr5_3:11339950-11339969 None:intergenic 40.0%
TTTCGCAAGATCAGAATGAG+TGG - chr5_3:11339951-11339970 None:intergenic 40.0%
ACTTATCCAGCTGGATTCAT+GGG + chr5_3:11340062-11340081 Msa0798590:CDS 40.0%
CGTCTAAGTTCACCAGTATT+TGG + chr5_3:11340349-11340368 Msa0798590:intron 40.0%
CGAAAGCTCTCATTTGTCTT+AGG - chr5_3:11340550-11340569 None:intergenic 40.0%
ACTCCGTAGCATACTTTGAA+TGG + chr5_3:11340677-11340696 Msa0798590:intron 40.0%
GTGATGGTTGTTACTGTGAA+TGG + chr5_3:11340898-11340917 Msa0798590:intron 40.0%
TGCCATGTACATCACATACA+AGG - chr5_3:11341081-11341100 None:intergenic 40.0%
AAGGTTCGTTCAGTGCAATT+TGG + chr5_3:11341114-11341133 Msa0798590:CDS 40.0%
AGGTTCGTTCAGTGCAATTT+GGG + chr5_3:11341115-11341134 Msa0798590:CDS 40.0%
!!! CAACAATCTTGTTTTCCTCC+AGG - chr5_3:11341233-11341252 None:intergenic 40.0%
AATGTAGTTATGGTGACTGG+TGG + chr5_3:11341276-11341295 Msa0798590:CDS 40.0%
CTGGTCAATGTGTTCACTAT+TGG + chr5_3:11341405-11341424 Msa0798590:CDS 40.0%
CAATGTGTTCACTATTGGCA+AGG + chr5_3:11341410-11341429 Msa0798590:CDS 40.0%
ATGTGTTCACTATTGGCAAG+GGG + chr5_3:11341412-11341431 Msa0798590:CDS 40.0%
CAACTGGTATTATGGTAAGG+TGG - chr5_3:11341761-11341780 None:intergenic 40.0%
CACATAACCAGAGCTGAAAT+TGG + chr5_3:11341783-11341802 Msa0798590:three_prime_UTR 40.0%
ACGGCCCATTAAACCATGTT+TGG - chr5_3:11339304-11339323 None:intergenic 45.0%
! ACATGGTTTAATGGGCCGTT+TGG + chr5_3:11339305-11339324 Msa0798590:intron 45.0%
! GTTTAATGGGCCGTTTGGAT+TGG + chr5_3:11339310-11339329 Msa0798590:intron 45.0%
! TCCAAACGGGTTCTTAGTGT+TGG + chr5_3:11339530-11339549 Msa0798590:intron 45.0%
ACCAACACTAAGAACCCGTT+TGG - chr5_3:11339534-11339553 None:intergenic 45.0%
GTTTGTGAATGTAACAGGCG+AGG + chr5_3:11339721-11339740 Msa0798590:intron 45.0%
TTGTGAATGTAACAGGCGAG+GGG + chr5_3:11339723-11339742 Msa0798590:intron 45.0%
TGTCAAGCATCCAATGCTTG+GGG - chr5_3:11339779-11339798 None:intergenic 45.0%
TGGATGCTTGACAAATTGGG+TGG + chr5_3:11339786-11339805 Msa0798590:CDS 45.0%
CAACGACATGTCCTTGTTGA+TGG + chr5_3:11340020-11340039 Msa0798590:CDS 45.0%
!! TCCTTGTTGATGGCAAAGTC+AGG + chr5_3:11340030-11340049 Msa0798590:CDS 45.0%
TCCTGACTTTGCCATCAACA+AGG - chr5_3:11340034-11340053 None:intergenic 45.0%
ACTGACAAGACTTATCCAGC+TGG + chr5_3:11340053-11340072 Msa0798590:CDS 45.0%
GACTTATCCAGCTGGATTCA+TGG + chr5_3:11340061-11340080 Msa0798590:CDS 45.0%
TTCATACCCATGAATCCAGC+TGG - chr5_3:11340071-11340090 None:intergenic 45.0%
!! CGTTTGCTGTATGACACCAA+AGG + chr5_3:11340568-11340587 Msa0798590:CDS 45.0%
TGACTGAATGGAGACGGAAA+CGG - chr5_3:11340594-11340613 None:intergenic 45.0%
CATCTCTGACTGAATGGAGA+CGG - chr5_3:11340600-11340619 None:intergenic 45.0%
CCTCATCATCTCTGACTGAA+TGG - chr5_3:11340606-11340625 None:intergenic 45.0%
CCATTCAGTCAGAGATGATG+AGG + chr5_3:11340603-11340622 Msa0798590:CDS 45.0%
AGTCAGAGATGATGAGGCAA+AGG + chr5_3:11340609-11340628 Msa0798590:CDS 45.0%
TCAGTGCAATTTGGGCAGAA+AGG + chr5_3:11341123-11341142 Msa0798590:CDS 45.0%
CCATCATAGGTGTTCAGGTA+TGG - chr5_3:11341153-11341172 None:intergenic 45.0%
CCATACCTGAACACCTATGA+TGG + chr5_3:11341150-11341169 Msa0798590:CDS 45.0%
! AGTGTCATTAGCCCTGATGA+CGG - chr5_3:11341199-11341218 None:intergenic 45.0%
GGCTAATGACACTATCAAGC+TGG + chr5_3:11341206-11341225 Msa0798590:CDS 45.0%
GGGAATGTAGTTATGGTGAC+TGG + chr5_3:11341273-11341292 Msa0798590:CDS 45.0%
TGGTGACTGGTGGTAAGAAT+AGG + chr5_3:11341286-11341305 Msa0798590:CDS 45.0%
GGTGACTGGTGGTAAGAATA+GGG + chr5_3:11341287-11341306 Msa0798590:CDS 45.0%
GTGACTGGTGGTAAGAATAG+GGG + chr5_3:11341288-11341307 Msa0798590:CDS 45.0%
TGACTGGTGGTAAGAATAGG+GGG + chr5_3:11341289-11341308 Msa0798590:CDS 45.0%
! CTGAACGTGGATTGTCTCAA+AGG - chr5_3:11341355-11341374 None:intergenic 45.0%
!! CTTTGAGACAATCCACGTTC+AGG + chr5_3:11341353-11341372 Msa0798590:CDS 45.0%
AGTTGCAAACTCATGACCAG+TGG - chr5_3:11341382-11341401 None:intergenic 45.0%
TCATGAGTTTGCAACTCGTC+TGG + chr5_3:11341386-11341405 Msa0798590:CDS 45.0%
TAACTGTCATTGAGGAAGCG+AGG + chr5_3:11341478-11341497 Msa0798590:CDS 45.0%
GCTCTGGTTATGTGATCAAC+TGG - chr5_3:11341777-11341796 None:intergenic 45.0%
!!! AATAATTGATTAATTTATTT+TGG + chr5_3:11340111-11340130 Msa0798590:intron 5.0%
CTACAGAGTGGAGAGAGTGA+TGG - chr5_3:11338933-11338952 None:intergenic 50.0%
GTCAAGCATCCAATGCTTGG+GGG - chr5_3:11339778-11339797 None:intergenic 50.0%
TAGGCTCCTAAACCCTCATC+TGG + chr5_3:11339900-11339919 Msa0798590:intron 50.0%
TGTGGTCCAGATGAGGGTTT+AGG - chr5_3:11339909-11339928 None:intergenic 50.0%
GACTTGTGTGGTCCAGATGA+GGG - chr5_3:11339915-11339934 None:intergenic 50.0%
ATCTGGACCACACAAGTCCA+GGG + chr5_3:11339917-11339936 Msa0798590:CDS 50.0%
AGACATTCCCTGGACTTGTG+TGG - chr5_3:11339927-11339946 None:intergenic 50.0%
AATGAGTGGGAGACATTCCC+TGG - chr5_3:11339937-11339956 None:intergenic 50.0%
TCACGAGGATACCGAAGATC+AGG - chr5_3:11340442-11340461 None:intergenic 50.0%
ATGGCAGTTCAAGCTGTGCA+AGG + chr5_3:11341095-11341114 Msa0798590:intron 50.0%
TGCGACCATCATAGGTGTTC+AGG - chr5_3:11341158-11341177 None:intergenic 50.0%
ACGGATAGTGCGACCATCAT+AGG - chr5_3:11341166-11341185 None:intergenic 50.0%
! TGTCATTAGCCCTGATGACG+GGG - chr5_3:11341197-11341216 None:intergenic 50.0%
! GTGTCATTAGCCCTGATGAC+GGG - chr5_3:11341198-11341217 None:intergenic 50.0%
TGACACTATCAAGCTGGACC+TGG + chr5_3:11341212-11341231 Msa0798590:CDS 50.0%
CCATGGGTTTCTCTTCCCAA+GGG + chr5_3:11341441-11341460 Msa0798590:CDS 50.0%
GTTTCTCTTCCCAAGGGCAA+GGG + chr5_3:11341447-11341466 Msa0798590:CDS 50.0%
TCATTGAGGAAGCGAGGAAG+AGG + chr5_3:11341484-11341503 Msa0798590:CDS 50.0%
CATTGAGGAAGCGAGGAAGA+GGG + chr5_3:11341485-11341504 Msa0798590:CDS 50.0%
! GAGTGGAGAGAGTGATGGTG+CGG - chr5_3:11338928-11338947 None:intergenic 55.0%
TCTTCGCAGCAGCTACAGAG+TGG - chr5_3:11338945-11338964 None:intergenic 55.0%
CTCTGTAGCTGCTGCGAAGA+AGG + chr5_3:11338945-11338964 Msa0798590:five_prime_UTR 55.0%
GGACTTGTGTGGTCCAGATG+AGG - chr5_3:11339916-11339935 None:intergenic 55.0%
CATCTGGACCACACAAGTCC+AGG + chr5_3:11339916-11339935 Msa0798590:CDS 55.0%
ATGGAGACGGAAACGGCCTT+TGG - chr5_3:11340587-11340606 None:intergenic 55.0%
!! TGATGACGGGGTCTGGGTAA+CGG - chr5_3:11341185-11341204 None:intergenic 55.0%
TTACCCAGACCCCGTCATCA+GGG + chr5_3:11341185-11341204 Msa0798590:CDS 55.0%
CACTATCAAGCTGGACCTGG+AGG + chr5_3:11341215-11341234 Msa0798590:CDS 55.0%
! GGTAAGAATAGGGGGCGTGT+TGG + chr5_3:11341297-11341316 Msa0798590:CDS 55.0%
ATCCACGTTCAGGATGCCAC+TGG + chr5_3:11341363-11341382 Msa0798590:CDS 55.0%
TTGGCAAGGGGACAAAGCCA+TGG + chr5_3:11341424-11341443 Msa0798590:CDS 55.0%
TGGCAAGGGGACAAAGCCAT+GGG + chr5_3:11341425-11341444 Msa0798590:CDS 55.0%
GCCATGGGTTTCTCTTCCCA+AGG + chr5_3:11341440-11341459 Msa0798590:CDS 55.0%
CCCTTGGGAAGAGAAACCCA+TGG - chr5_3:11341444-11341463 None:intergenic 55.0%
GGTTTCTCTTCCCAAGGGCA+AGG + chr5_3:11341446-11341465 Msa0798590:CDS 55.0%
GGCTCAATGCCCCCAAGCAT+TGG + chr5_3:11339766-11339785 Msa0798590:CDS 60.0%
GTTACCCAGACCCCGTCATC+AGG + chr5_3:11341184-11341203 Msa0798590:CDS 60.0%
!! TAGCCCTGATGACGGGGTCT+GGG - chr5_3:11341191-11341210 None:intergenic 60.0%
!! TTAGCCCTGATGACGGGGTC+TGG - chr5_3:11341192-11341211 None:intergenic 60.0%
GACCAGTGGCATCCTGAACG+TGG - chr5_3:11341368-11341387 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 11338854 11341864 11338854 ID=Msa0798590;Name=Msa0798590
chr5_3 mRNA 11338854 11341864 11338854 ID=Msa0798590-mRNA-1;Parent=Msa0798590;Name=Msa0798590-mRNA-1;_AED=0.10;_eAED=0.10;_QI=127|1|1|1|0.8|0.66|6|305|265
chr5_3 exon 11338854 11338983 11338854 ID=Msa0798590-mRNA-1:exon:4680;Parent=Msa0798590-mRNA-1
chr5_3 exon 11339738 11339815 11339738 ID=Msa0798590-mRNA-1:exon:4681;Parent=Msa0798590-mRNA-1
chr5_3 exon 11339903 11340083 11339903 ID=Msa0798590-mRNA-1:exon:4682;Parent=Msa0798590-mRNA-1
chr5_3 exon 11340533 11340630 11340533 ID=Msa0798590-mRNA-1:exon:4683;Parent=Msa0798590-mRNA-1
chr5_3 exon 11341102 11341565 11341102 ID=Msa0798590-mRNA-1:exon:4684;Parent=Msa0798590-mRNA-1
chr5_3 exon 11341586 11341864 11341586 ID=Msa0798590-mRNA-1:exon:4685;Parent=Msa0798590-mRNA-1
chr5_3 five_prime_UTR 11338854 11338980 11338854 ID=Msa0798590-mRNA-1:five_prime_utr;Parent=Msa0798590-mRNA-1
chr5_3 CDS 11338981 11338983 11338981 ID=Msa0798590-mRNA-1:cds;Parent=Msa0798590-mRNA-1
chr5_3 CDS 11339738 11339815 11339738 ID=Msa0798590-mRNA-1:cds;Parent=Msa0798590-mRNA-1
chr5_3 CDS 11339903 11340083 11339903 ID=Msa0798590-mRNA-1:cds;Parent=Msa0798590-mRNA-1
chr5_3 CDS 11340533 11340630 11340533 ID=Msa0798590-mRNA-1:cds;Parent=Msa0798590-mRNA-1
chr5_3 CDS 11341102 11341539 11341102 ID=Msa0798590-mRNA-1:cds;Parent=Msa0798590-mRNA-1
chr5_3 three_prime_UTR 11341540 11341565 11341540 ID=Msa0798590-mRNA-1:three_prime_utr;Parent=Msa0798590-mRNA-1
chr5_3 three_prime_UTR 11341586 11341864 11341586 ID=Msa0798590-mRNA-1:three_prime_utr;Parent=Msa0798590-mRNA-1
Gene Sequence

>Msa0798590

ATGGCGAGGGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTTGACAAATTGGGTGGTGCTTTTGCTCCTAAACCCTCATCTGGACCACACAAGTCCAGGGAATGTCTCCCACTCATTCTGATCTTGCGAAACAGATTGAAGTATGCTTTGACATACCGTGAAGTCATTGCTATTCTGATGCAACGACATGTCCTTGTTGATGGCAAAGTCAGGACTGACAAGACTTATCCAGCTGGATTCATGGATGTTGTTTCAATCCCTAAGACAAATGAGAGCTTTCGTTTGCTGTATGACACCAAAGGCCGTTTCCGTCTCCATTCAGTCAGAGATGATGAGGCAAAGTTCAAGCTGTGCAAGGTTCGTTCAGTGCAATTTGGGCAGAAAGGTATTCCATACCTGAACACCTATGATGGTCGCACTATCCGTTACCCAGACCCCGTCATCAGGGCTAATGACACTATCAAGCTGGACCTGGAGGAAAACAAGATTGTTGATTTCATCAAATTTGATGTTGGGAATGTAGTTATGGTGACTGGTGGTAAGAATAGGGGGCGTGTTGGAGTGATCAAGAACAGAGAAAAGCATAAGGGAACCTTTGAGACAATCCACGTTCAGGATGCCACTGGTCATGAGTTTGCAACTCGTCTGGTCAATGTGTTCACTATTGGCAAGGGGACAAAGCCATGGGTTTCTCTTCCCAAGGGCAAGGGTATTAAATTAACTGTCATTGAGGAAGCGAGGAAGAGGGCTGCTGCAGCTCAGCAAGCAGTTGCTGCTTAA

Protein sequence

>Msa0798590

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNESFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGKNRGRVGVIKNREKHKGTFETIHVQDATGHEFATRLVNVFTIGKGTKPWVSLPKGKGIKLTVIEEARKRAAAAQQAVAA*