AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0851020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851020 MtrunA17_Chr5g0423211 92.903 155 11 0 1 155 184 338 4.20e-102 301
Msa0851020 MtrunA17_Chr5g0421091 75.776 161 37 2 1 159 179 339 1.09e-84 257
Msa0851020 MtrunA17_Chr5g0420901 73.125 160 42 1 1 159 180 339 1.61e-83 254
Msa0851020 MtrunA17_Chr5g0420941 75.641 156 37 1 1 155 179 334 2.79e-81 248
Msa0851020 MtrunA17_Chr8g0365241 72.436 156 42 1 1 155 192 347 5.48e-80 245
Msa0851020 MtrunA17_Chr5g0420981 72.078 154 42 1 1 153 188 341 1.98e-78 241
Msa0851020 MtrunA17_Chr5g0420951 70.513 156 45 1 1 155 188 343 1.02e-76 236
Msa0851020 MtrunA17_Chr5g0420881 75.735 136 32 1 25 159 1 136 5.58e-75 225
Msa0851020 MtrunA17_Chr5g0420721 67.308 156 50 1 1 155 83 238 2.34e-74 227
Msa0851020 MtrunA17_Chr5g0423191 66.667 156 51 1 1 155 181 336 3.41e-73 228
Msa0851020 MtrunA17_Chr5g0423251 65.385 156 53 1 1 155 181 336 1.77e-71 223
Msa0851020 MtrunA17_Chr5g0421101 67.532 154 49 1 1 153 181 334 3.68e-71 222
Msa0851020 MtrunA17_Chr5g0421041 63.462 156 56 1 1 155 179 334 4.27e-71 222
Msa0851020 MtrunA17_Chr5g0421011 66.667 156 51 1 1 155 181 336 1.19e-70 221
Msa0851020 MtrunA17_Chr5g0423221 64.331 157 54 2 1 155 205 361 1.43e-67 214
Msa0851020 MtrunA17_Chr8g0375681 62.338 154 57 1 1 153 118 271 2.03e-67 211
Msa0851020 MtrunA17_Chr5g0423201 63.462 156 56 1 1 155 182 337 2.03e-67 213
Msa0851020 MtrunA17_Chr8g0375601 62.821 156 57 1 1 155 185 340 1.12e-65 209
Msa0851020 MtrunA17_Chr8g0375671 62.500 160 59 1 1 159 190 349 1.61e-65 208
Msa0851020 MtrunA17_Chr8g0375571 58.929 168 68 1 1 167 183 350 5.55e-65 206
Msa0851020 MtrunA17_Chr2g0314401 58.974 156 63 1 1 155 187 342 4.57e-64 204
Msa0851020 MtrunA17_Chr1g0162191 59.494 158 63 1 3 159 185 342 5.88e-61 196
Msa0851020 MtrunA17_Chr2g0314391 57.051 156 66 1 1 155 206 361 8.18e-60 194
Msa0851020 MtrunA17_Chr2g0314381 52.071 169 80 1 1 168 213 381 1.84e-59 193
Msa0851020 MtrunA17_Chr8g0375701 52.761 163 75 2 3 164 190 351 1.40e-55 182
Msa0851020 MtrunA17_Chr7g0239111 42.000 150 86 1 7 155 195 344 2.08e-42 148
Msa0851020 MtrunA17_Chr7g0239821 44.000 150 83 1 7 155 204 353 6.05e-42 147
Msa0851020 MtrunA17_Chr2g0296371 41.279 172 99 2 5 174 192 363 6.12e-42 147
Msa0851020 MtrunA17_Chr2g0314371 56.034 116 49 1 1 116 210 323 3.17e-41 144
Msa0851020 MtrunA17_Chr7g0242551 44.079 152 79 3 1 147 192 342 4.16e-39 139
Msa0851020 MtrunA17_Chr5g0437181 46.939 147 73 3 5 147 191 336 8.64e-39 139
Msa0851020 MtrunA17_Chr7g0239101 40.127 157 91 2 1 155 189 344 2.23e-38 137
Msa0851020 MtrunA17_Chr3g0114861 46.970 132 68 2 17 147 191 321 1.91e-37 134
Msa0851020 MtrunA17_Chr4g0006371 42.857 161 85 4 1 156 200 358 4.14e-37 134
Msa0851020 MtrunA17_Chr3g0128001 44.156 154 85 1 1 153 170 323 8.50e-37 133
Msa0851020 MtrunA17_Chr7g0239071 40.397 151 87 2 7 155 140 289 3.18e-36 130
Msa0851020 MtrunA17_Chr7g0239121 41.060 151 87 2 7 155 191 341 3.48e-36 132
Msa0851020 MtrunA17_Chr3g0113641 45.113 133 70 2 17 147 206 337 4.72e-36 131
Msa0851020 MtrunA17_Chr3g0087031 38.415 164 95 2 1 163 194 352 4.96e-36 131
Msa0851020 MtrunA17_Chr5g0424201 45.865 133 70 2 17 148 196 327 3.22e-35 129
Msa0851020 MtrunA17_Chr7g0265221 40.667 150 83 4 15 160 225 372 6.42e-35 129
Msa0851020 MtrunA17_Chr3g0145171 38.889 162 95 3 1 160 188 347 8.53e-35 128
Msa0851020 MtrunA17_Chr3g0109041 38.182 165 96 3 1 160 182 345 1.44e-34 127
Msa0851020 MtrunA17_Chr7g0239091 39.161 143 86 1 14 155 297 439 2.21e-34 129
Msa0851020 MtrunA17_Chr8g0345831 38.462 169 97 3 1 168 177 339 3.16e-34 126
Msa0851020 MtrunA17_Chr8g0370711 39.506 162 94 3 1 160 188 347 4.44e-34 126
Msa0851020 MtrunA17_Chr5g0412651 40.764 157 91 2 12 167 190 345 5.33e-34 125
Msa0851020 MtrunA17_Chr8g0375581 60.465 86 34 0 1 86 1 86 1.27e-33 117
Msa0851020 MtrunA17_Chr3g0126761 49.600 125 60 3 25 148 91 213 1.53e-33 122
Msa0851020 MtrunA17_Chr8g0370721 39.506 162 94 3 1 160 188 347 2.12e-33 124
Msa0851020 MtrunA17_Chr1g0162361 38.608 158 87 4 14 168 183 333 4.51e-33 123
Msa0851020 MtrunA17_Chr4g0045411 37.576 165 99 3 1 162 177 340 5.24e-33 123
Msa0851020 MtrunA17_Chr4g0064781 41.096 146 80 3 1 142 182 325 7.60e-33 122
Msa0851020 MtrunA17_Chr5g0426891 40.719 167 93 5 1 162 173 338 9.20e-33 122
Msa0851020 MtrunA17_Chr3g0126741 44.667 150 78 4 1 147 194 341 1.40e-32 122
Msa0851020 MtrunA17_Chr1g0179801 38.462 156 93 3 6 160 212 365 3.37e-32 121
Msa0851020 MtrunA17_Chr5g0398291 42.282 149 83 2 16 162 205 352 1.29e-31 119
Msa0851020 MtrunA17_Chr3g0145181 40.845 142 81 2 23 163 211 350 1.30e-31 119
Msa0851020 MtrunA17_Chr5g0412681 41.611 149 84 3 5 151 169 316 1.39e-31 119
Msa0851020 MtrunA17_Chr8g0336861 38.750 160 93 2 1 156 196 354 2.34e-31 119
Msa0851020 MtrunA17_Chr1g0162351 39.286 140 81 3 4 140 226 364 1.29e-30 117
Msa0851020 MtrunA17_Chr7g0232161 45.631 103 56 0 1 103 194 296 1.68e-30 116
Msa0851020 MtrunA17_Chr8g0336631 37.654 162 95 3 1 158 196 355 2.63e-30 116
Msa0851020 MtrunA17_Chr3g0145201 40.845 142 81 2 23 163 846 985 2.68e-30 119
Msa0851020 MtrunA17_Chr5g0424211 38.849 139 81 3 1 136 178 315 3.06e-30 115
Msa0851020 MtrunA17_Chr1g0162321 39.286 140 81 3 4 140 226 364 3.59e-30 116
Msa0851020 MtrunA17_Chr5g0412671 38.217 157 95 2 12 167 190 345 4.14e-30 115
Msa0851020 MtrunA17_Chr8g0336851 38.272 162 94 3 1 158 195 354 9.20e-30 115
Msa0851020 MtrunA17_Chr8g0348081 38.509 161 93 4 2 158 196 354 9.79e-30 114
Msa0851020 MtrunA17_Chr7g0266651 36.709 158 94 4 1 153 192 348 2.47e-29 114
Msa0851020 MtrunA17_Chr1g0161041 38.776 147 86 3 12 155 238 383 2.83e-29 114
Msa0851020 MtrunA17_Chr8g0336761 36.420 162 97 3 1 158 195 354 3.36e-29 113
Msa0851020 MtrunA17_Chr4g0045441 34.568 162 102 3 4 162 181 341 3.37e-29 113
Msa0851020 MtrunA17_Chr2g0332191 35.593 177 103 6 17 189 202 371 4.92e-29 113
Msa0851020 MtrunA17_Chr2g0311761 37.037 162 97 2 1 158 202 362 6.79e-29 112
Msa0851020 MtrunA17_Chr7g0233661 40.800 125 68 2 23 147 19 137 1.17e-28 107
Msa0851020 MtrunA17_Chr3g0121141 37.600 125 76 2 28 151 162 285 2.45e-28 110
Msa0851020 MtrunA17_Chr8g0336781 36.250 160 96 3 1 156 231 388 2.55e-28 111
Msa0851020 MtrunA17_Chr2g0311831 37.654 162 95 3 1 158 202 361 3.33e-28 110
Msa0851020 MtrunA17_Chr1g0161111 41.538 130 72 3 26 152 288 416 3.57e-28 111
Msa0851020 MtrunA17_Chr6g0474391 45.312 128 66 3 14 139 222 347 3.58e-28 110
Msa0851020 MtrunA17_Chr4g0064771 37.671 146 85 3 1 142 47 190 4.48e-28 107
Msa0851020 MtrunA17_Chr4g0045471 39.850 133 71 5 16 140 189 320 5.01e-28 110
Msa0851020 MtrunA17_Chr2g0311921 35.625 160 98 2 1 156 188 346 5.16e-28 110
Msa0851020 MtrunA17_Chr3g0125201 38.235 136 80 2 24 155 159 294 8.78e-28 108
Msa0851020 MtrunA17_Chr4g0045431 34.568 162 102 3 4 162 181 341 9.23e-28 109
Msa0851020 MtrunA17_Chr5g0394071 39.200 125 70 2 23 147 45 163 1.30e-27 105
Msa0851020 MtrunA17_Chr1g0161081 39.850 133 76 3 26 155 229 360 1.30e-27 109
Msa0851020 MtrunA17_Chr4g0075471 36.800 125 76 2 10 131 12 136 1.39e-27 104
Msa0851020 MtrunA17_Chr1g0170631 39.474 152 87 3 1 149 24 173 1.66e-27 105
Msa0851020 MtrunA17_Chr3g0093741 41.727 139 77 4 25 160 210 347 1.80e-27 108
Msa0851020 MtrunA17_Chr8g0351101 43.651 126 69 2 15 139 212 336 2.04e-27 108
Msa0851020 MtrunA17_Chr8g0336751 33.987 153 96 2 1 149 228 379 2.14e-27 108
Msa0851020 MtrunA17_Chr1g0204181 45.669 127 67 2 14 139 217 342 2.90e-27 108
Msa0851020 MtrunA17_Chr4g0068891 39.333 150 84 4 18 161 167 315 4.09e-27 107
Msa0851020 MtrunA17_Chr4g0045461 32.787 183 116 4 4 183 180 358 4.40e-27 107
Msa0851020 MtrunA17_Chr6g0455481 39.568 139 83 1 26 163 200 338 4.48e-27 107
Msa0851020 MtrunA17_Chr1g0184161 39.394 132 78 2 23 153 195 325 5.20e-27 107
Msa0851020 MtrunA17_Chr8g0336801 37.956 137 79 3 26 158 12 146 7.74e-27 102
Msa0851020 MtrunA17_Chr3g0093761 41.007 139 78 4 25 160 209 346 7.99e-27 106
Msa0851020 MtrunA17_Chr2g0319491 40.800 125 68 2 23 147 187 305 9.07e-27 106
Msa0851020 MtrunA17_Chr7g0220001 37.013 154 95 2 1 153 174 326 1.26e-26 105
Msa0851020 MtrunA17_Chr6g0472861 37.725 167 89 6 1 158 203 363 1.32e-26 106
Msa0851020 MtrunA17_Chr7g0225881 37.584 149 81 4 14 151 207 354 1.39e-26 106
Msa0851020 MtrunA17_Chr1g0184121 36.486 148 90 3 23 168 195 340 1.48e-26 105
Msa0851020 MtrunA17_Chr8g0354261 36.364 154 92 2 1 149 204 356 1.82e-26 106
Msa0851020 MtrunA17_Chr8g0371931 41.322 121 68 2 1 119 176 295 2.11e-26 105
Msa0851020 MtrunA17_Chr4g0045451 32.704 159 103 3 4 159 181 338 2.16e-26 105
Msa0851020 MtrunA17_Chr2g0311861 33.951 162 101 3 1 158 178 337 2.42e-26 105
Msa0851020 MtrunA17_Chr7g0265351 40.559 143 79 4 22 160 190 330 2.56e-26 105
Msa0851020 MtrunA17_Chr1g0184101 39.098 133 79 2 25 156 197 328 3.12e-26 105
Msa0851020 MtrunA17_Chr2g0311691 40.146 137 73 3 26 154 222 357 5.08e-26 104
Msa0851020 MtrunA17_Chr1g0184111 38.519 135 79 3 23 155 195 327 6.24e-26 104
Msa0851020 MtrunA17_Chr4g0066121 35.099 151 93 2 1 147 196 345 1.15e-25 103
Msa0851020 MtrunA17_Chr3g0093751 40.288 139 79 4 25 160 210 347 1.23e-25 103
Msa0851020 MtrunA17_Chr7g0250511 39.073 151 82 5 15 157 196 344 1.36e-25 103
Msa0851020 MtrunA17_Chr7g0220011 40.310 129 76 1 26 153 196 324 1.67e-25 102
Msa0851020 MtrunA17_Chr5g0439011 36.364 132 80 2 28 155 163 294 1.73e-25 102
Msa0851020 MtrunA17_Chr2g0289341 31.655 139 93 2 24 160 158 296 2.56e-25 102
Msa0851020 MtrunA17_Chr2g0311701 38.931 131 71 2 26 148 228 357 2.73e-25 103
Msa0851020 MtrunA17_Chr4g0037611 37.302 126 72 3 23 147 34 153 2.98e-25 99.0
Msa0851020 MtrunA17_Chr2g0293931 40.132 152 81 6 20 162 50 200 3.80e-25 99.4
Msa0851020 MtrunA17_Chr1g0187821 32.484 157 101 2 1 153 201 356 4.30e-25 102
Msa0851020 MtrunA17_Chr7g0235951 32.203 177 107 4 1 170 201 371 5.29e-25 102
Msa0851020 MtrunA17_Chr2g0311631 38.849 139 76 3 21 151 208 345 6.69e-25 101
Msa0851020 MtrunA17_Chr1g0167931 36.667 150 90 2 1 146 149 297 7.17e-25 100
Msa0851020 MtrunA17_Chr8g0371921 41.322 121 68 2 1 119 176 295 7.88e-25 101
Msa0851020 MtrunA17_Chr1g0167911 35.211 142 85 3 26 161 212 352 1.04e-24 101
Msa0851020 MtrunA17_Chr2g0311681 37.956 137 76 3 26 154 222 357 1.14e-24 101
Msa0851020 MtrunA17_Chr2g0311741 36.842 133 81 2 23 153 183 314 1.22e-24 100
Msa0851020 MtrunA17_Chr3g0125421 43.750 128 68 2 4 128 181 307 1.69e-24 100
Msa0851020 MtrunA17_Chr2g0285931 31.214 173 106 5 1 161 156 327 1.69e-24 100
Msa0851020 MtrunA17_Chr1g0187831 33.974 156 97 3 1 151 204 358 1.90e-24 100
Msa0851020 MtrunA17_Chr7g0235981 33.750 160 96 3 1 152 155 312 2.37e-24 99.8
Msa0851020 MtrunA17_Chr2g0311711 36.719 128 75 2 26 148 226 352 3.07e-24 100
Msa0851020 MtrunA17_Chr5g0405411 39.837 123 71 2 1 121 176 297 3.82e-24 99.8
Msa0851020 MtrunA17_Chr1g0191201 41.538 130 74 2 4 132 201 329 4.23e-24 99.8
Msa0851020 MtrunA17_Chr8g0354241 33.333 156 98 2 1 151 204 358 5.40e-24 99.4
Msa0851020 MtrunA17_Chr4g0050031 37.255 153 89 5 1 148 197 347 1.18e-23 98.2
Msa0851020 MtrunA17_Chr3g0130391 39.837 123 73 1 15 137 225 346 1.68e-23 98.2
Msa0851020 MtrunA17_Chr6g0488511 40.000 130 70 3 28 155 162 285 3.95e-23 95.9
Msa0851020 MtrunA17_Chr3g0102041 39.669 121 70 2 1 119 176 295 7.87e-23 95.9
Msa0851020 MtrunA17_Chr1g0167951 33.951 162 101 3 1 158 186 345 9.54e-23 95.9
Msa0851020 MtrunA17_Chr1g0148771 37.121 132 71 4 22 148 213 337 1.68e-22 95.1
Msa0851020 MtrunA17_Chr1g0167961 35.333 150 92 2 1 146 203 351 1.84e-22 95.1
Msa0851020 MtrunA17_Chr1g0184151 33.333 135 88 2 23 156 195 328 2.00e-22 94.7
Msa0851020 MtrunA17_Chr4g0055591 34.586 133 80 3 27 153 216 347 5.48e-22 93.6
Msa0851020 MtrunA17_Chr1g0194321 34.591 159 88 4 20 163 172 329 1.26e-21 92.4
Msa0851020 MtrunA17_Chr2g0313111 31.765 170 105 6 1 161 152 319 1.48e-21 92.0
Msa0851020 MtrunA17_Chr1g0184241 32.704 159 104 3 1 158 201 357 1.58e-21 92.4
Msa0851020 MtrunA17_Chr8g0358941 31.609 174 105 5 1 161 155 327 5.12e-21 90.5
Msa0851020 MtrunA17_Chr1g0187811 29.114 158 105 3 2 153 323 479 6.45e-21 91.7
Msa0851020 MtrunA17_Chr8g0336871 33.133 166 95 4 1 162 11 164 1.13e-20 86.3
Msa0851020 MtrunA17_Chr8g0384481 39.130 115 67 3 15 128 214 326 3.33e-20 89.0
Msa0851020 MtrunA17_Chr8g0384461 39.130 115 68 2 15 128 203 316 8.98e-20 87.4
Msa0851020 MtrunA17_Chr8g0364471 28.302 159 106 2 1 152 201 358 2.39e-19 86.3
Msa0851020 MtrunA17_Chr7g0247991 31.138 167 106 3 1 160 201 365 4.26e-19 85.9
Msa0851020 MtrunA17_Chr3g0105281 36.975 119 72 1 1 119 167 282 1.99e-18 83.2
Msa0851020 MtrunA17_Chr8g0335411 32.192 146 90 3 26 164 226 369 6.68e-18 82.4
Msa0851020 MtrunA17_Chr4g0009561 31.944 144 94 3 27 167 176 318 9.55e-18 81.3
Msa0851020 MtrunA17_Chr7g0236011 31.073 177 109 4 1 170 201 371 1.13e-17 81.6
Msa0851020 MtrunA17_Chr4g0004071 39.200 125 73 3 38 160 182 305 1.78e-17 80.5
Msa0851020 MtrunA17_Chr4g0066991 31.250 160 102 3 1 153 181 339 1.81e-17 80.9
Msa0851020 MtrunA17_Chr8g0375621 60.714 56 22 0 1 56 1 56 2.63e-17 74.3
Msa0851020 MtrunA17_Chr4g0052251 27.907 172 112 6 1 161 157 327 9.56e-17 78.6
Msa0851020 MtrunA17_Chr7g0219991 45.977 87 46 1 1 87 269 354 5.33e-16 76.6
Msa0851020 MtrunA17_Chr3g0114871 41.463 82 47 1 17 98 194 274 5.34e-16 75.9
Msa0851020 MtrunA17_Chr2g0319521 49.254 67 33 1 23 89 59 124 5.54e-16 72.8
Msa0851020 MtrunA17_Chr2g0314361 49.254 67 33 1 90 155 1 67 5.83e-16 71.2
Msa0851020 MtrunA17_Chr3g0138351 32.558 129 83 4 38 163 186 313 1.00e-15 75.5
Msa0851020 MtrunA17_Chr3g0092581 31.667 120 77 3 1 118 12 128 2.81e-15 72.0
Msa0851020 MtrunA17_Chr3g0092531 34.454 119 75 3 1 118 140 256 6.45e-15 73.2
Msa0851020 MtrunA17_Chr8g0364171 43.284 67 37 1 23 89 61 126 1.29e-14 69.3
Msa0851020 MtrunA17_Chr4g0004061 37.398 123 73 4 38 157 182 303 1.86e-14 72.0
Msa0851020 MtrunA17_Chr4g0053251 44.444 81 44 1 38 117 199 279 6.02e-14 70.5
Msa0851020 MtrunA17_Chr4g0009541 32.540 126 81 4 27 149 173 297 8.44e-14 70.1
Msa0851020 MtrunA17_Chr8g0389941 35.606 132 76 5 25 149 204 333 1.11e-13 70.1
Msa0851020 MtrunA17_Chr1g0158011 39.655 116 64 5 25 136 117 230 1.19e-13 68.9
Msa0851020 MtrunA17_Chr8g0348951 31.928 166 97 6 16 175 157 312 1.22e-13 69.7
Msa0851020 MtrunA17_Chr1g0161101 39.623 106 51 4 26 128 407 502 1.65e-13 70.1
Msa0851020 MtrunA17_Chr7g0256741 32.877 146 93 4 15 157 161 304 1.84e-13 69.3
Msa0851020 MtrunA17_Chr8g0362741 43.284 67 37 1 23 89 208 273 3.49e-13 68.2
Msa0851020 MtrunA17_Chr6g0486831 36.975 119 67 4 37 149 206 322 8.18e-13 67.4
Msa0851020 MtrunA17_Chr1g0167921 36.364 88 55 1 1 88 70 156 1.94e-12 63.9
Msa0851020 MtrunA17_Chr4g0011311 41.791 67 38 1 23 89 223 288 3.17e-12 65.5
Msa0851020 MtrunA17_Chr7g0247741 36.364 121 71 4 16 132 158 276 3.91e-12 65.5
Msa0851020 MtrunA17_Chr2g0311611 37.500 72 37 2 25 89 1 71 2.28e-11 58.5
Msa0851020 MtrunA17_Chr1g0158031 37.391 115 66 4 25 136 38 149 5.37e-11 60.1
Msa0851020 MtrunA17_Chr5g0407781 26.761 142 102 2 16 155 144 285 7.33e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0851020 AT1G17020.1 59.615 156 60 2 1 153 189 344 2.04e-63 203
Msa0851020 AT4G25310.1 59.355 155 61 2 1 153 185 339 7.49e-60 193
Msa0851020 AT1G78550.2 55.128 156 69 1 1 155 111 266 1.12e-59 191
Msa0851020 AT1G17010.1 57.143 161 67 2 1 159 190 350 1.17e-59 193
Msa0851020 AT1G78550.1 55.128 156 69 1 1 155 189 344 9.40e-59 191
Msa0851020 AT4G25300.2 57.895 152 62 2 4 153 97 248 4.71e-58 186
Msa0851020 AT4G25300.1 57.895 152 62 2 4 153 191 342 9.41e-57 186
Msa0851020 AT3G21420.1 45.625 160 84 3 4 160 196 355 2.02e-43 151
Msa0851020 AT4G25310.2 56.557 122 50 2 33 153 192 311 3.37e-38 136
Msa0851020 AT2G38240.1 45.395 152 77 3 1 147 181 331 3.93e-38 137
Msa0851020 AT5G05600.1 40.462 173 97 4 1 169 200 370 7.28e-38 137
Msa0851020 AT3G11180.1 45.033 151 78 3 1 147 229 378 3.98e-37 135
Msa0851020 AT3G11180.2 45.033 151 78 3 1 147 229 378 4.75e-37 135
Msa0851020 AT5G20400.1 41.975 162 90 3 1 160 182 341 1.08e-36 133
Msa0851020 AT1G49390.2 40.741 162 92 3 1 160 103 262 3.20e-36 130
Msa0851020 AT1G49390.1 40.741 162 92 3 1 160 182 341 1.89e-35 130
Msa0851020 AT3G55970.1 44.444 153 78 4 1 147 190 341 5.05e-35 129
Msa0851020 AT4G10490.1 38.217 157 93 3 1 154 177 332 2.68e-33 124
Msa0851020 AT4G10500.1 37.908 153 92 3 1 151 179 330 5.20e-33 123
Msa0851020 AT4G16330.1 36.646 161 96 3 1 160 96 251 1.29e-32 120
Msa0851020 AT5G24530.1 38.953 172 96 3 1 168 170 336 1.40e-32 122
Msa0851020 AT2G44800.1 40.361 166 92 5 1 162 188 350 3.93e-32 121
Msa0851020 AT4G16330.2 36.646 161 96 3 1 160 202 357 1.10e-31 120
Msa0851020 AT5G20550.1 41.935 155 86 4 1 151 182 336 1.28e-31 120
Msa0851020 AT4G22880.1 39.181 171 98 3 1 166 187 356 1.49e-31 120
Msa0851020 AT4G22880.2 39.181 171 98 3 1 166 187 356 1.49e-31 120
Msa0851020 AT4G22880.3 39.181 171 98 3 1 166 187 356 1.49e-31 120
Msa0851020 AT2G36690.2 43.262 141 77 3 16 155 212 350 1.49e-31 120
Msa0851020 AT2G36690.1 43.262 141 77 3 16 155 212 350 1.49e-31 120
Msa0851020 AT5G54000.1 39.583 144 85 2 1 142 103 246 1.85e-31 117
Msa0851020 AT3G60290.1 41.290 155 86 4 1 153 188 339 2.62e-31 119
Msa0851020 AT5G54000.2 39.583 144 85 2 1 142 183 326 9.07e-31 117
Msa0851020 AT1G77330.1 40.602 133 78 1 24 155 161 293 5.41e-30 114
Msa0851020 AT1G12010.1 38.168 131 78 2 22 151 159 287 2.26e-29 113
Msa0851020 AT5G43450.1 39.850 133 75 2 26 154 218 349 2.40e-29 114
Msa0851020 AT1G62380.1 38.346 133 79 2 24 155 161 291 6.50e-29 112
Msa0851020 AT3G19010.1 35.673 171 100 5 1 168 175 338 1.01e-28 112
Msa0851020 AT3G19010.4 35.673 171 100 5 1 168 175 338 1.01e-28 112
Msa0851020 AT1G03410.2 37.342 158 93 3 1 153 192 348 2.22e-28 111
Msa0851020 AT1G06650.2 35.404 161 97 4 1 156 199 357 2.32e-28 111
Msa0851020 AT1G03410.1 37.342 158 93 3 1 153 229 385 3.37e-28 111
Msa0851020 AT3G19000.1 36.310 168 97 5 4 168 183 343 3.55e-28 110
Msa0851020 AT1G04380.1 35.897 156 95 2 1 152 176 330 9.86e-28 109
Msa0851020 AT2G30830.1 36.306 157 95 4 1 153 189 344 1.25e-27 109
Msa0851020 AT1G06645.1 34.783 161 98 4 1 156 209 367 1.44e-27 109
Msa0851020 AT5G07200.1 50.000 106 52 1 14 119 217 321 1.53e-27 109
Msa0851020 AT2G30840.1 36.025 161 90 5 1 153 193 348 2.30e-27 108
Msa0851020 AT5G43440.1 38.346 133 77 2 26 154 221 352 2.40e-27 108
Msa0851020 AT1G04350.1 36.306 157 94 3 1 152 190 345 2.66e-27 108
Msa0851020 AT5G59540.1 39.355 155 81 5 1 147 197 346 3.38e-27 108
Msa0851020 AT3G51240.2 41.322 121 68 2 1 119 91 210 3.43e-27 106
Msa0851020 AT1G06620.1 36.875 160 95 3 1 156 196 353 3.58e-27 108
Msa0851020 AT1G06640.1 36.196 163 93 6 1 156 199 357 3.70e-27 108
Msa0851020 AT1G15550.1 37.984 129 77 3 22 148 211 338 4.18e-27 108
Msa0851020 AT4G21200.1 49.485 97 48 1 23 119 195 290 4.39e-27 107
Msa0851020 AT3G19010.3 34.783 161 95 5 11 168 155 308 6.98e-27 106
Msa0851020 AT1G55290.1 41.353 133 74 3 23 152 215 346 9.19e-27 107
Msa0851020 AT5G59530.1 36.875 160 88 5 1 152 195 349 9.48e-27 107
Msa0851020 AT3G51240.1 41.322 121 68 2 1 119 175 294 1.08e-26 107
Msa0851020 AT4G25420.1 43.200 125 70 1 4 128 208 331 1.40e-26 107
Msa0851020 AT1G44090.1 44.915 118 63 2 15 131 221 337 1.51e-26 107
Msa0851020 AT5G08640.2 40.152 132 77 2 17 147 195 325 1.73e-26 105
Msa0851020 AT5G08640.1 40.152 132 77 2 17 147 195 325 1.73e-26 105
Msa0851020 AT3G13610.1 37.594 133 79 3 23 152 215 346 2.47e-26 105
Msa0851020 AT3G12900.1 42.424 132 73 3 23 152 211 341 3.44e-26 105
Msa0851020 AT1G80330.1 41.538 130 72 3 22 148 206 334 4.23e-26 105
Msa0851020 AT5G51810.1 39.597 149 84 3 15 162 217 360 9.30e-26 104
Msa0851020 AT1G05010.1 40.909 110 63 2 24 131 158 267 2.12e-25 102
Msa0851020 AT1G60980.1 41.270 126 73 1 4 129 208 332 2.55e-25 103
Msa0851020 AT5G07480.2 39.706 136 73 3 21 149 93 226 5.32e-25 100
Msa0851020 AT1G03400.1 33.553 152 95 2 1 147 182 332 1.41e-24 100
Msa0851020 AT1G80340.1 37.037 135 82 3 16 148 198 331 1.88e-24 100
Msa0851020 AT3G61400.1 38.411 151 80 6 16 155 211 359 2.25e-24 100
Msa0851020 AT5G07480.1 39.706 136 73 3 21 149 202 335 2.67e-24 100
Msa0851020 AT2G19590.2 41.221 131 67 4 28 155 152 275 2.70e-24 99.4
Msa0851020 AT2G19590.1 41.221 131 67 4 28 155 167 290 2.86e-24 99.4
Msa0851020 AT2G30840.3 35.404 161 85 6 1 153 193 342 1.14e-23 98.6
Msa0851020 AT5G63590.1 39.850 133 77 3 17 147 166 297 6.13e-23 95.9
Msa0851020 AT1G78440.1 30.286 175 109 5 1 163 145 318 2.49e-22 94.7
Msa0851020 AT1G50960.1 39.831 118 70 1 3 120 176 292 2.14e-21 92.0
Msa0851020 AT5G43935.1 36.220 127 76 3 23 148 161 283 2.69e-21 91.3
Msa0851020 AT5G63600.1 38.760 129 75 3 23 149 185 311 4.44e-21 90.9
Msa0851020 AT1G02400.1 37.313 134 77 5 20 147 177 309 1.32e-20 89.7
Msa0851020 AT2G34555.1 34.146 164 97 7 5 159 159 320 1.57e-20 89.7
Msa0851020 AT2G25450.1 35.152 165 91 6 1 155 189 347 1.67e-20 89.7
Msa0851020 AT1G47990.1 33.125 160 91 6 18 162 156 314 1.89e-20 89.4
Msa0851020 AT5G63600.2 38.462 130 75 4 23 149 185 312 3.05e-20 88.6
Msa0851020 AT4G22870.1 40.541 111 64 1 58 166 2 112 5.18e-20 83.2
Msa0851020 AT5G05600.2 42.857 91 50 1 1 89 200 290 5.24e-20 87.4
Msa0851020 AT5G12270.1 36.111 144 84 4 17 152 201 344 6.68e-20 88.2
Msa0851020 AT1G03400.2 28.333 180 95 3 1 147 182 360 4.63e-19 85.9
Msa0851020 AT1G30040.1 30.667 150 98 4 17 161 178 326 1.06e-18 84.7
Msa0851020 AT4G21690.1 36.641 131 75 4 23 148 206 333 2.30e-18 84.0
Msa0851020 AT4G22870.2 39.474 114 64 2 58 166 40 153 6.38e-18 79.0
Msa0851020 AT3G19000.2 40.909 88 49 2 4 89 183 269 1.18e-17 80.9
Msa0851020 AT3G55970.2 43.011 93 49 2 1 89 190 282 1.26e-17 81.3
Msa0851020 AT5G63595.1 40.000 90 53 1 23 112 161 249 2.28e-17 80.1
Msa0851020 AT1G06650.1 39.326 89 53 1 1 89 199 286 1.74e-16 78.2
Msa0851020 AT2G30840.2 42.391 92 44 3 1 88 193 279 2.04e-16 77.8
Msa0851020 AT3G49620.1 44.792 96 51 2 23 117 212 306 2.40e-16 78.2
Msa0851020 AT1G06620.2 43.182 88 49 1 1 88 196 282 2.47e-16 77.4
Msa0851020 AT1G06640.2 42.222 90 47 3 1 88 199 285 3.65e-16 77.4
Msa0851020 AT1G52820.1 34.307 137 87 3 23 157 170 305 4.92e-16 77.0
Msa0851020 AT1G06640.3 40.659 91 49 3 1 89 199 286 1.40e-15 75.1
Msa0851020 AT5G51810.2 44.872 78 42 1 15 92 217 293 1.77e-15 75.1
Msa0851020 AT1G14130.1 33.835 133 85 2 14 143 147 279 1.82e-15 75.1
Msa0851020 AT4G23340.2 31.788 151 89 5 25 170 47 188 1.95e-15 73.6
Msa0851020 AT1G04380.2 40.659 91 53 1 1 91 176 265 1.96e-15 74.7
Msa0851020 AT3G19010.2 35.870 92 56 2 1 90 175 265 2.97e-15 74.3
Msa0851020 AT4G25420.2 40.698 86 50 1 4 89 208 292 4.06e-15 73.9
Msa0851020 AT3G49630.2 40.625 96 55 2 23 117 114 208 7.25e-15 72.8
Msa0851020 AT3G47190.1 32.231 121 77 3 2 121 174 290 8.29e-15 73.6
Msa0851020 AT5G59540.2 43.011 93 44 4 1 89 197 284 8.69e-15 72.8
Msa0851020 AT3G50210.2 43.023 86 48 1 33 117 118 203 1.06e-14 72.4
Msa0851020 AT3G49630.3 40.625 96 55 2 23 117 183 277 1.24e-14 73.2
Msa0851020 AT3G49630.1 40.625 96 55 2 23 117 187 281 1.26e-14 73.2
Msa0851020 AT4G23340.1 31.788 151 89 5 25 170 165 306 3.19e-14 71.6
Msa0851020 AT3G50210.4 43.023 86 48 1 33 117 200 285 3.31e-14 71.6
Msa0851020 AT3G50210.1 43.023 86 48 1 33 117 200 285 3.31e-14 71.6
Msa0851020 AT3G50210.3 43.023 86 48 1 33 117 200 285 3.31e-14 71.6
Msa0851020 AT4G03070.1 34.400 125 79 3 35 157 187 310 2.22e-13 69.3
Msa0851020 AT3G61400.2 44.304 79 38 3 16 89 211 288 4.33e-13 68.2
Msa0851020 AT5G43450.2 44.444 63 34 1 26 88 218 279 4.45e-13 68.2
Msa0851020 AT5G58660.1 32.540 126 81 3 2 124 186 310 6.71e-13 68.2
Msa0851020 AT4G03050.2 38.211 123 72 4 38 157 274 395 1.17e-12 67.8
Msa0851020 AT4G03050.1 38.211 123 72 4 38 157 274 395 1.17e-12 67.8
Msa0851020 AT3G46500.4 31.293 147 88 6 23 162 43 183 2.97e-12 64.3
Msa0851020 AT5G43440.2 41.270 63 36 1 26 88 221 282 4.64e-12 65.1
Msa0851020 AT3G46500.10 31.293 147 88 6 23 162 105 245 7.69e-12 64.3
Msa0851020 AT3G46500.1 31.293 147 88 6 23 162 105 245 7.69e-12 64.3
Msa0851020 AT3G46500.5 31.293 147 88 6 23 162 179 319 9.87e-12 64.7
Msa0851020 AT1G14120.2 34.677 124 78 2 23 143 155 278 4.77e-11 62.4
Msa0851020 AT1G14120.1 34.677 124 78 2 23 143 155 278 4.77e-11 62.4
Msa0851020 AT1G14120.3 34.677 124 78 2 23 143 155 278 4.77e-11 62.4

Find 88 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGTCCAATCACTTGTTC+TGG 0.328193 5_4:-41003054 None:intergenic
TCCAATCACTTGTTCTGGTT+GGG 0.332492 5_4:-41003049 None:intergenic
CTGCATTTCACAGTCCTCAT+AGG 0.348432 5_4:+41003931 Msa0851020:CDS
AGCATTAGAAAGGGGTTTGA+TGG 0.369320 5_4:-41003166 None:intergenic
GACGTAATCTGCAATTGAAA+TGG 0.377458 5_4:-41004012 None:intergenic
AATAAATCTAGCAATTCATT+TGG 0.381210 5_4:-41002979 None:intergenic
TTCATCATCACAGGAACCTT+AGG 0.389980 5_4:+41005036 Msa0851020:CDS
TGCATTTCACAGTCCTCATA+GGG 0.402224 5_4:+41003932 Msa0851020:CDS
AAGAGATGGATCAGTCAATA+AGG 0.409662 5_4:+41003004 Msa0851020:CDS
GGTCTAGTTGTCCCGCCCTT+TGG 0.411261 5_4:-41004952 None:intergenic
CTTGAAGTAAATGAAATTCA+AGG 0.417553 5_4:+41003111 Msa0851020:CDS
TCAATTGCAGATTACGTCAA+TGG 0.417961 5_4:+41004017 Msa0851020:CDS
GCTAGATTTATTTGAAGAGA+TGG 0.437717 5_4:+41002990 Msa0851020:CDS
ACTTGTTCTGGTTGGGGACA+TGG 0.441214 5_4:-41003042 None:intergenic
GACCACAAAAGCATTAGAAA+GGG 0.445343 5_4:-41003175 None:intergenic
TTGCTCTATGTTCGATGCTC+TGG 0.446370 5_4:-41003875 None:intergenic
GAAATGCGGGAACATTTCAT+TGG 0.446973 5_4:-41005016 None:intergenic
ACGACGCTTATTACCTTCCT+CGG 0.452158 5_4:-41004812 None:intergenic
GTCCAATCACTTGTTCTGGT+TGG 0.453877 5_4:-41003050 None:intergenic
ACTCCGCGGAACTTCACTAA+TGG 0.458887 5_4:+41004874 Msa0851020:CDS
AGTCCTCATAGGGGTGATAT+AGG 0.465152 5_4:+41003942 Msa0851020:CDS
TTCATTTACTTCAAGAAGGA+TGG 0.476853 5_4:-41003103 None:intergenic
TTACTTCAAGAAGGATGGTA+AGG 0.480687 5_4:-41003098 None:intergenic
TGACCACAAAAGCATTAGAA+AGG 0.485231 5_4:-41003176 None:intergenic
AGCGTGTACTGCCATGAGTT+GGG 0.486472 5_4:-41004917 None:intergenic
CCCCAACCAGAACAAGTGAT+TGG 0.487198 5_4:+41003048 Msa0851020:CDS
TCATCATCACAGGAACCTTA+GGG 0.490703 5_4:+41005037 Msa0851020:CDS
TCCCATTTACCTTGCTTGAG+AGG 0.493601 5_4:-41004043 None:intergenic
AGGTTTCACCGACGAAGAAA+AGG 0.495447 5_4:+41004981 Msa0851020:CDS
GGTCAATATTGGAGATATGT+TGG 0.497283 5_4:+41003194 Msa0851020:CDS
GAGGGGACAAGGAGCCATCA+TGG 0.502674 5_4:+41004840 Msa0851020:CDS
CCAATCACTTGTTCTGGTTG+GGG 0.504933 5_4:-41003048 None:intergenic
GCATTAGAAAGGGGTTTGAT+GGG 0.507749 5_4:-41003165 None:intergenic
GCTGCTACGGCGAGACCAAA+GGG 0.507940 5_4:+41004937 Msa0851020:CDS
TTCGTCGGTGAAACCTAGGA+TGG 0.512679 5_4:-41004974 None:intergenic
GAATTTCATTTACTTCAAGA+AGG 0.515138 5_4:-41003107 None:intergenic
TTCCCGCATTTCATCATCAC+AGG 0.519015 5_4:+41005027 Msa0851020:CDS
CGCTGCTACGGCGAGACCAA+AGG 0.520540 5_4:+41004936 Msa0851020:CDS
CAGCGTGTACTGCCATGAGT+TGG 0.524191 5_4:-41004918 None:intergenic
GAGTTGGGCACATTTCCTCC+TGG 0.530197 5_4:-41004902 None:intergenic
CGTCGTGGACAGAGGGGACA+AGG 0.538043 5_4:+41004829 Msa0851020:CDS
GAGGAAATGTGCCCAACTCA+TGG 0.540379 5_4:+41004906 Msa0851020:CDS
GGCCGGAGTACCTCGTGAAG+CGG 0.540508 5_4:-41004691 None:intergenic
ACCTTAGGGCATGACGTACC+AGG 0.541132 5_4:+41005051 Msa0851020:CDS
GTGTGGCAGATTCTAAGCAA+TGG 0.545212 5_4:+41003846 Msa0851020:intron
GGAGTAACAAGACTTGGTGC+TGG 0.546381 5_4:-41003966 None:intergenic
AACGATGTTATATTTATGCA+AGG 0.550177 5_4:-41002841 None:intergenic
TTTCTTCGTCGGTGAAACCT+AGG 0.552080 5_4:-41004978 None:intergenic
GGACTTAATCCTCACTCTGA+TGG 0.555218 5_4:+41003069 Msa0851020:CDS
AGGGGACAAGGAGCCATCAT+GGG 0.556828 5_4:+41004841 Msa0851020:CDS
CGACGCTTATTACCTTCCTC+GGG 0.556921 5_4:-41004811 None:intergenic
CATGGCAGTACACGCTGCTA+CGG 0.558294 5_4:+41004924 Msa0851020:CDS
CAGTAAATTCAGAGAAGGAG+AGG 0.565744 5_4:+41003898 Msa0851020:CDS
TAATAAGCGTCGTGGACAGA+GGG 0.571085 5_4:+41004822 Msa0851020:CDS
GGACCTATATCACCCCTATG+AGG 0.571478 5_4:-41003945 None:intergenic
AGCAACAGTAAATTCAGAGA+AGG 0.577602 5_4:+41003893 Msa0851020:CDS
GGAAGAGTCACGCCCGAGGA+AGG 0.581141 5_4:+41004799 Msa0851020:CDS
CTACGGCGAGACCAAAGGGC+GGG 0.584125 5_4:+41004941 Msa0851020:CDS
TTCCTGTGATGATGAAATGC+GGG 0.596475 5_4:-41005029 None:intergenic
ACCACAAAAGCATTAGAAAG+GGG 0.597355 5_4:-41003174 None:intergenic
GACAGGAAGAGTCACGCCCG+AGG 0.601534 5_4:+41004795 Msa0851020:intron
TACTTCAAGAAGGATGGTAA+GGG 0.603255 5_4:-41003097 None:intergenic
AATCGAAGAGTTGATCAAGA+GGG 0.605346 5_4:+41004658 Msa0851020:CDS
AGTGGCGAATCCTCCCATGA+TGG 0.608205 5_4:-41004854 None:intergenic
TCGTCGGTGAAACCTAGGAT+GGG 0.608729 5_4:-41004973 None:intergenic
GGGACAACTAGACCCATCCT+AGG 0.610684 5_4:+41004961 Msa0851020:CDS
ACTTCACTAATGGCACGACC+AGG 0.618099 5_4:+41004884 Msa0851020:CDS
GGACAAGGAGCCATCATGGG+AGG 0.618444 5_4:+41004844 Msa0851020:CDS
CAATATTGGAGATATGTTGG+AGG 0.625508 5_4:+41003197 Msa0851020:CDS
ATCGAAGAGTTGATCAAGAG+GGG 0.637687 5_4:+41004659 Msa0851020:CDS
ATTAGTGAAGTTCCGCGGAG+TGG 0.638587 5_4:-41004872 None:intergenic
GTAATAAGCGTCGTGGACAG+AGG 0.639323 5_4:+41004821 Msa0851020:CDS
TCCCTCGTAAATTATGCACC+TGG 0.641135 5_4:-41005069 None:intergenic
CAATCGAAGAGTTGATCAAG+AGG 0.643070 5_4:+41004657 Msa0851020:CDS
CAATGGATACCTCTCAAGCA+AGG 0.657238 5_4:+41004034 Msa0851020:CDS
TGTTCTGGTTGGGGACATGG+AGG 0.662406 5_4:-41003039 None:intergenic
GAGGAAGGTAATAAGCGTCG+TGG 0.676929 5_4:+41004814 Msa0851020:CDS
TCACTAATGGCACGACCAGG+AGG 0.681960 5_4:+41004887 Msa0851020:CDS
TCGAAGAGTTGATCAAGAGG+GGG 0.683979 5_4:+41004660 Msa0851020:CDS
TGGGAGGATTCGCCACTCCG+CGG 0.688381 5_4:+41004860 Msa0851020:CDS
AGGGCAACACCATCAGAGTG+AGG 0.690556 5_4:-41003078 None:intergenic
GGAAGTTGAACCGCTTCACG+AGG 0.694431 5_4:+41004681 Msa0851020:CDS
AATAAGCGTCGTGGACAGAG+GGG 0.704645 5_4:+41004823 Msa0851020:CDS
GCTACGGCGAGACCAAAGGG+CGG 0.707628 5_4:+41004940 Msa0851020:CDS
GTGCCATTAGTGAAGTTCCG+CGG 0.709145 5_4:-41004877 None:intergenic
GACGAAGAAAAGGTGAACAG+AGG 0.710841 5_4:+41004991 Msa0851020:CDS
GCATTTCACAGTCCTCATAG+GGG 0.713209 5_4:+41003933 Msa0851020:CDS
GTTCCTGTGATGATGAAATG+CGG 0.730828 5_4:-41005030 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAGAAAATTTTATTAAAAAA+AGG - chr5_4:41003712-41003731 None:intergenic 10.0%
!!! TAAATATTTTAAATTTTGTG+TGG + chr5_4:41003829-41003848 Msa0851020:intron 10.0%
!!! TATATATTTTATGAAATAAG+AGG + chr5_4:41004139-41004158 Msa0851020:intron 10.0%
!!! CAGAAAATTTTATTAAAAAA+AGG - chr5_4:41003712-41003731 None:intergenic 10.0%
!!! TAAATATTTTAAATTTTGTG+TGG + chr5_4:41003829-41003848 Msa0851020:intron 10.0%
!!! TATATATTTTATGAAATAAG+AGG + chr5_4:41004139-41004158 Msa0851020:intron 10.0%
!!! TTAATAAAATTTTCTGAACT+AGG + chr5_4:41003716-41003735 Msa0851020:intron 15.0%
!!! TTAATAAAATTTTCTGAACT+AGG + chr5_4:41003716-41003735 Msa0851020:intron 15.0%
!! AATAAATCTAGCAATTCATT+TGG - chr5_4:41002982-41003001 None:intergenic 20.0%
!! AAATCAAAAAAGATGGAATA+TGG + chr5_4:41003139-41003158 Msa0851020:CDS 20.0%
!!! TTACAAATCGTTTTATCATT+TGG + chr5_4:41003236-41003255 Msa0851020:intron 20.0%
!! TAAAAAAAGATTGTCACAAA+TGG + chr5_4:41003582-41003601 Msa0851020:intron 20.0%
!!! TCTTTTTTTTTCAATGACTA+AGG + chr5_4:41003623-41003642 Msa0851020:intron 20.0%
!! AAATTTGTAGTAATTGTGTA+CGG + chr5_4:41004219-41004238 Msa0851020:intron 20.0%
!! AATAAATCTAGCAATTCATT+TGG - chr5_4:41002982-41003001 None:intergenic 20.0%
!! AAATCAAAAAAGATGGAATA+TGG + chr5_4:41003139-41003158 Msa0851020:CDS 20.0%
!!! TTACAAATCGTTTTATCATT+TGG + chr5_4:41003236-41003255 Msa0851020:intron 20.0%
!! TAAAAAAAGATTGTCACAAA+TGG + chr5_4:41003582-41003601 Msa0851020:intron 20.0%
!!! TCTTTTTTTTTCAATGACTA+AGG + chr5_4:41003623-41003642 Msa0851020:intron 20.0%
!! AAATTTGTAGTAATTGTGTA+CGG + chr5_4:41004219-41004238 Msa0851020:intron 20.0%
! AACGATGTTATATTTATGCA+AGG - chr5_4:41002844-41002863 None:intergenic 25.0%
! GAATTTCATTTACTTCAAGA+AGG - chr5_4:41003110-41003129 None:intergenic 25.0%
! CTTGAAGTAAATGAAATTCA+AGG + chr5_4:41003111-41003130 Msa0851020:CDS 25.0%
!! CTTAAAGTGTCTATCAATTA+CGG - chr5_4:41003422-41003441 None:intergenic 25.0%
!! TTAAATAATGCAGGACTTTT+AGG - chr5_4:41003990-41004009 None:intergenic 25.0%
!!! GAAATGGTTTTAAATAATGC+AGG - chr5_4:41003999-41004018 None:intergenic 25.0%
! AATCATACTTAGATGTTGTT+AGG + chr5_4:41004066-41004085 Msa0851020:intron 25.0%
! TGAATAATATTGTAAGTCCA+TGG + chr5_4:41004101-41004120 Msa0851020:intron 25.0%
!! TAACAGTATATTTAAAGCCA+TGG - chr5_4:41004121-41004140 None:intergenic 25.0%
! TTTATGAAATAAGAGGACTT+AGG + chr5_4:41004146-41004165 Msa0851020:intron 25.0%
! GTCATTGTAAAGAATTAACT+TGG + chr5_4:41004174-41004193 Msa0851020:intron 25.0%
!! AAAGAATTAACTTGGTTAGT+TGG + chr5_4:41004182-41004201 Msa0851020:intron 25.0%
! AAAATTACGTGTATGATGAA+AGG - chr5_4:41004247-41004266 None:intergenic 25.0%
!!! TCAAACTAACTTGTGTTTTA+AGG + chr5_4:41004286-41004305 Msa0851020:intron 25.0%
!! CGGTAAAAATTTTGAATAGT+AGG + chr5_4:41004326-41004345 Msa0851020:intron 25.0%
! TCAATGGAAATAGAAGAATT+TGG - chr5_4:41004594-41004613 None:intergenic 25.0%
!! TCTTTCGTTTCTCATATTTT+CGG - chr5_4:41004715-41004734 None:intergenic 25.0%
! AAAATATGAGAAACGAAAGA+TGG + chr5_4:41004715-41004734 Msa0851020:intron 25.0%
! AACGATGTTATATTTATGCA+AGG - chr5_4:41002844-41002863 None:intergenic 25.0%
! GAATTTCATTTACTTCAAGA+AGG - chr5_4:41003110-41003129 None:intergenic 25.0%
! CTTGAAGTAAATGAAATTCA+AGG + chr5_4:41003111-41003130 Msa0851020:CDS 25.0%
!! CTTAAAGTGTCTATCAATTA+CGG - chr5_4:41003422-41003441 None:intergenic 25.0%
!! TTAAATAATGCAGGACTTTT+AGG - chr5_4:41003990-41004009 None:intergenic 25.0%
!!! GAAATGGTTTTAAATAATGC+AGG - chr5_4:41003999-41004018 None:intergenic 25.0%
! AATCATACTTAGATGTTGTT+AGG + chr5_4:41004066-41004085 Msa0851020:intron 25.0%
! TGAATAATATTGTAAGTCCA+TGG + chr5_4:41004101-41004120 Msa0851020:intron 25.0%
!! TAACAGTATATTTAAAGCCA+TGG - chr5_4:41004121-41004140 None:intergenic 25.0%
! TTTATGAAATAAGAGGACTT+AGG + chr5_4:41004146-41004165 Msa0851020:intron 25.0%
! GTCATTGTAAAGAATTAACT+TGG + chr5_4:41004174-41004193 Msa0851020:intron 25.0%
!! AAAGAATTAACTTGGTTAGT+TGG + chr5_4:41004182-41004201 Msa0851020:intron 25.0%
! AAAATTACGTGTATGATGAA+AGG - chr5_4:41004247-41004266 None:intergenic 25.0%
!!! TCAAACTAACTTGTGTTTTA+AGG + chr5_4:41004286-41004305 Msa0851020:intron 25.0%
!! CGGTAAAAATTTTGAATAGT+AGG + chr5_4:41004326-41004345 Msa0851020:intron 25.0%
! TCAATGGAAATAGAAGAATT+TGG - chr5_4:41004594-41004613 None:intergenic 25.0%
!! TCTTTCGTTTCTCATATTTT+CGG - chr5_4:41004715-41004734 None:intergenic 25.0%
! AAAATATGAGAAACGAAAGA+TGG + chr5_4:41004715-41004734 Msa0851020:intron 25.0%
GCTAGATTTATTTGAAGAGA+TGG + chr5_4:41002990-41003009 Msa0851020:CDS 30.0%
TTCATTTACTTCAAGAAGGA+TGG - chr5_4:41003106-41003125 None:intergenic 30.0%
GGACTTCAAATCAAAAAAGA+TGG + chr5_4:41003132-41003151 Msa0851020:CDS 30.0%
! AATGCTTTTGTGGTCAATAT+TGG + chr5_4:41003183-41003202 Msa0851020:CDS 30.0%
CGATTTGTAAGTAATTGTGT+TGG - chr5_4:41003226-41003245 None:intergenic 30.0%
AACTAGGTAATAGAGTGAAA+GGG + chr5_4:41003732-41003751 Msa0851020:intron 30.0%
! GGAAAATTTTCAATCCAGTT+GGG + chr5_4:41003753-41003772 Msa0851020:intron 30.0%
! TTTTCTGAATCTAAGAGCAA+AGG - chr5_4:41003804-41003823 None:intergenic 30.0%
CCTTCAAAAATTCATCAACA+CGG + chr5_4:41004504-41004523 Msa0851020:intron 30.0%
GCTAGATTTATTTGAAGAGA+TGG + chr5_4:41002990-41003009 Msa0851020:CDS 30.0%
TTCATTTACTTCAAGAAGGA+TGG - chr5_4:41003106-41003125 None:intergenic 30.0%
GGACTTCAAATCAAAAAAGA+TGG + chr5_4:41003132-41003151 Msa0851020:CDS 30.0%
! AATGCTTTTGTGGTCAATAT+TGG + chr5_4:41003183-41003202 Msa0851020:CDS 30.0%
CGATTTGTAAGTAATTGTGT+TGG - chr5_4:41003226-41003245 None:intergenic 30.0%
AACTAGGTAATAGAGTGAAA+GGG + chr5_4:41003732-41003751 Msa0851020:intron 30.0%
! GGAAAATTTTCAATCCAGTT+GGG + chr5_4:41003753-41003772 Msa0851020:intron 30.0%
! TTTTCTGAATCTAAGAGCAA+AGG - chr5_4:41003804-41003823 None:intergenic 30.0%
CCTTCAAAAATTCATCAACA+CGG + chr5_4:41004504-41004523 Msa0851020:intron 30.0%
AAGAGATGGATCAGTCAATA+AGG + chr5_4:41003004-41003023 Msa0851020:CDS 35.0%
TTAAGTCCAATCACTTGTTC+TGG - chr5_4:41003057-41003076 None:intergenic 35.0%
TACTTCAAGAAGGATGGTAA+GGG - chr5_4:41003100-41003119 None:intergenic 35.0%
TTACTTCAAGAAGGATGGTA+AGG - chr5_4:41003101-41003120 None:intergenic 35.0%
!! ACCACAAAAGCATTAGAAAG+GGG - chr5_4:41003177-41003196 None:intergenic 35.0%
!! GACCACAAAAGCATTAGAAA+GGG - chr5_4:41003178-41003197 None:intergenic 35.0%
!! TGACCACAAAAGCATTAGAA+AGG - chr5_4:41003179-41003198 None:intergenic 35.0%
GGTCAATATTGGAGATATGT+TGG + chr5_4:41003194-41003213 Msa0851020:CDS 35.0%
CAATATTGGAGATATGTTGG+AGG + chr5_4:41003197-41003216 Msa0851020:CDS 35.0%
GAACTAGGTAATAGAGTGAA+AGG + chr5_4:41003731-41003750 Msa0851020:intron 35.0%
! GGGAAAATTTTCAATCCAGT+TGG + chr5_4:41003752-41003771 Msa0851020:intron 35.0%
AGCAACAGTAAATTCAGAGA+AGG + chr5_4:41003893-41003912 Msa0851020:CDS 35.0%
!! CTTTTAGGAGTAACAAGACT+TGG - chr5_4:41003975-41003994 None:intergenic 35.0%
GACGTAATCTGCAATTGAAA+TGG - chr5_4:41004015-41004034 None:intergenic 35.0%
TCAATTGCAGATTACGTCAA+TGG + chr5_4:41004017-41004036 Msa0851020:CDS 35.0%
AAATAAGAGGACTTAGGCTT+TGG + chr5_4:41004152-41004171 Msa0851020:intron 35.0%
AGGACACATGTTAACAATGA+CGG + chr5_4:41004306-41004325 Msa0851020:intron 35.0%
!! CCTTAATCATTTTGTTGTCG+CGG - chr5_4:41004429-41004448 None:intergenic 35.0%
CGCGACAACAAAATGATTAA+GGG + chr5_4:41004427-41004446 Msa0851020:intron 35.0%
!! CCGTGTTGATGAATTTTTGA+AGG - chr5_4:41004507-41004526 None:intergenic 35.0%
TTCTATTTCCATTGATGCCA+CGG + chr5_4:41004599-41004618 Msa0851020:intron 35.0%
! AATCGAAGAGTTGATCAAGA+GGG + chr5_4:41004658-41004677 Msa0851020:CDS 35.0%
AAGAGATGGATCAGTCAATA+AGG + chr5_4:41003004-41003023 Msa0851020:CDS 35.0%
TTAAGTCCAATCACTTGTTC+TGG - chr5_4:41003057-41003076 None:intergenic 35.0%
TACTTCAAGAAGGATGGTAA+GGG - chr5_4:41003100-41003119 None:intergenic 35.0%
TTACTTCAAGAAGGATGGTA+AGG - chr5_4:41003101-41003120 None:intergenic 35.0%
!! ACCACAAAAGCATTAGAAAG+GGG - chr5_4:41003177-41003196 None:intergenic 35.0%
!! GACCACAAAAGCATTAGAAA+GGG - chr5_4:41003178-41003197 None:intergenic 35.0%
!! TGACCACAAAAGCATTAGAA+AGG - chr5_4:41003179-41003198 None:intergenic 35.0%
GGTCAATATTGGAGATATGT+TGG + chr5_4:41003194-41003213 Msa0851020:CDS 35.0%
CAATATTGGAGATATGTTGG+AGG + chr5_4:41003197-41003216 Msa0851020:CDS 35.0%
GAACTAGGTAATAGAGTGAA+AGG + chr5_4:41003731-41003750 Msa0851020:intron 35.0%
! GGGAAAATTTTCAATCCAGT+TGG + chr5_4:41003752-41003771 Msa0851020:intron 35.0%
AGCAACAGTAAATTCAGAGA+AGG + chr5_4:41003893-41003912 Msa0851020:CDS 35.0%
!! CTTTTAGGAGTAACAAGACT+TGG - chr5_4:41003975-41003994 None:intergenic 35.0%
GACGTAATCTGCAATTGAAA+TGG - chr5_4:41004015-41004034 None:intergenic 35.0%
TCAATTGCAGATTACGTCAA+TGG + chr5_4:41004017-41004036 Msa0851020:CDS 35.0%
AAATAAGAGGACTTAGGCTT+TGG + chr5_4:41004152-41004171 Msa0851020:intron 35.0%
AGGACACATGTTAACAATGA+CGG + chr5_4:41004306-41004325 Msa0851020:intron 35.0%
!! CCTTAATCATTTTGTTGTCG+CGG - chr5_4:41004429-41004448 None:intergenic 35.0%
CGCGACAACAAAATGATTAA+GGG + chr5_4:41004427-41004446 Msa0851020:intron 35.0%
!! CCGTGTTGATGAATTTTTGA+AGG - chr5_4:41004507-41004526 None:intergenic 35.0%
TTCTATTTCCATTGATGCCA+CGG + chr5_4:41004599-41004618 Msa0851020:intron 35.0%
! AATCGAAGAGTTGATCAAGA+GGG + chr5_4:41004658-41004677 Msa0851020:CDS 35.0%
! TCCAATCACTTGTTCTGGTT+GGG - chr5_4:41003052-41003071 None:intergenic 40.0%
GCATTAGAAAGGGGTTTGAT+GGG - chr5_4:41003168-41003187 None:intergenic 40.0%
AGCATTAGAAAGGGGTTTGA+TGG - chr5_4:41003169-41003188 None:intergenic 40.0%
! ACCCCTTTCTAATGCTTTTG+TGG + chr5_4:41003173-41003192 Msa0851020:CDS 40.0%
CTGAATCTAAGAGCAAAGGA+AGG - chr5_4:41003800-41003819 None:intergenic 40.0%
CAGTAAATTCAGAGAAGGAG+AGG + chr5_4:41003898-41003917 Msa0851020:CDS 40.0%
TGCATTTCACAGTCCTCATA+GGG + chr5_4:41003932-41003951 Msa0851020:CDS 40.0%
TACCTCTCAAGCAAGGTAAA+TGG + chr5_4:41004041-41004060 Msa0851020:intron 40.0%
ACCTCTCAAGCAAGGTAAAT+GGG + chr5_4:41004042-41004061 Msa0851020:intron 40.0%
CCGCGACAACAAAATGATTA+AGG + chr5_4:41004426-41004445 Msa0851020:intron 40.0%
TTCATCAACACGGAGTTCAA+AGG + chr5_4:41004514-41004533 Msa0851020:intron 40.0%
GCAGATTCTTTCGATGATTG+AGG - chr5_4:41004557-41004576 None:intergenic 40.0%
ATCGAAAGAATCTGCCAAGA+CGG + chr5_4:41004562-41004581 Msa0851020:intron 40.0%
! CAATCGAAGAGTTGATCAAG+AGG + chr5_4:41004657-41004676 Msa0851020:CDS 40.0%
! ATCGAAGAGTTGATCAAGAG+GGG + chr5_4:41004659-41004678 Msa0851020:CDS 40.0%
! TCGTTTCTCATATTTTCGGC+CGG - chr5_4:41004711-41004730 None:intergenic 40.0%
! AACGAAAGATGGATTCACCA+TGG + chr5_4:41004726-41004745 Msa0851020:intron 40.0%
! TCTGTTCACCTTTTCTTCGT+CGG - chr5_4:41004992-41005011 None:intergenic 40.0%
GAAATGCGGGAACATTTCAT+TGG - chr5_4:41005019-41005038 None:intergenic 40.0%
! TTCCTGTGATGATGAAATGC+GGG - chr5_4:41005032-41005051 None:intergenic 40.0%
! GTTCCTGTGATGATGAAATG+CGG - chr5_4:41005033-41005052 None:intergenic 40.0%
TTCATCATCACAGGAACCTT+AGG + chr5_4:41005036-41005055 Msa0851020:CDS 40.0%
TCATCATCACAGGAACCTTA+GGG + chr5_4:41005037-41005056 Msa0851020:CDS 40.0%
! TCCAATCACTTGTTCTGGTT+GGG - chr5_4:41003052-41003071 None:intergenic 40.0%
GCATTAGAAAGGGGTTTGAT+GGG - chr5_4:41003168-41003187 None:intergenic 40.0%
AGCATTAGAAAGGGGTTTGA+TGG - chr5_4:41003169-41003188 None:intergenic 40.0%
! ACCCCTTTCTAATGCTTTTG+TGG + chr5_4:41003173-41003192 Msa0851020:CDS 40.0%
CTGAATCTAAGAGCAAAGGA+AGG - chr5_4:41003800-41003819 None:intergenic 40.0%
CAGTAAATTCAGAGAAGGAG+AGG + chr5_4:41003898-41003917 Msa0851020:CDS 40.0%
TGCATTTCACAGTCCTCATA+GGG + chr5_4:41003932-41003951 Msa0851020:CDS 40.0%
TACCTCTCAAGCAAGGTAAA+TGG + chr5_4:41004041-41004060 Msa0851020:intron 40.0%
ACCTCTCAAGCAAGGTAAAT+GGG + chr5_4:41004042-41004061 Msa0851020:intron 40.0%
CCGCGACAACAAAATGATTA+AGG + chr5_4:41004426-41004445 Msa0851020:intron 40.0%
TTCATCAACACGGAGTTCAA+AGG + chr5_4:41004514-41004533 Msa0851020:intron 40.0%
GCAGATTCTTTCGATGATTG+AGG - chr5_4:41004557-41004576 None:intergenic 40.0%
ATCGAAAGAATCTGCCAAGA+CGG + chr5_4:41004562-41004581 Msa0851020:intron 40.0%
! CAATCGAAGAGTTGATCAAG+AGG + chr5_4:41004657-41004676 Msa0851020:CDS 40.0%
! ATCGAAGAGTTGATCAAGAG+GGG + chr5_4:41004659-41004678 Msa0851020:CDS 40.0%
! TCGTTTCTCATATTTTCGGC+CGG - chr5_4:41004711-41004730 None:intergenic 40.0%
! AACGAAAGATGGATTCACCA+TGG + chr5_4:41004726-41004745 Msa0851020:intron 40.0%
! TCTGTTCACCTTTTCTTCGT+CGG - chr5_4:41004992-41005011 None:intergenic 40.0%
GAAATGCGGGAACATTTCAT+TGG - chr5_4:41005019-41005038 None:intergenic 40.0%
! TTCCTGTGATGATGAAATGC+GGG - chr5_4:41005032-41005051 None:intergenic 40.0%
! GTTCCTGTGATGATGAAATG+CGG - chr5_4:41005033-41005052 None:intergenic 40.0%
TTCATCATCACAGGAACCTT+AGG + chr5_4:41005036-41005055 Msa0851020:CDS 40.0%
TCATCATCACAGGAACCTTA+GGG + chr5_4:41005037-41005056 Msa0851020:CDS 40.0%
! CCAATCACTTGTTCTGGTTG+GGG - chr5_4:41003051-41003070 None:intergenic 45.0%
GTCCAATCACTTGTTCTGGT+TGG - chr5_4:41003053-41003072 None:intergenic 45.0%
GGACTTAATCCTCACTCTGA+TGG + chr5_4:41003069-41003088 Msa0851020:CDS 45.0%
GTGTGGCAGATTCTAAGCAA+TGG + chr5_4:41003846-41003865 Msa0851020:intron 45.0%
TTGCTCTATGTTCGATGCTC+TGG - chr5_4:41003878-41003897 None:intergenic 45.0%
CTGCATTTCACAGTCCTCAT+AGG + chr5_4:41003931-41003950 Msa0851020:CDS 45.0%
GCATTTCACAGTCCTCATAG+GGG + chr5_4:41003933-41003952 Msa0851020:CDS 45.0%
AGTCCTCATAGGGGTGATAT+AGG + chr5_4:41003942-41003961 Msa0851020:CDS 45.0%
CAATGGATACCTCTCAAGCA+AGG + chr5_4:41004034-41004053 Msa0851020:CDS 45.0%
TCCCATTTACCTTGCTTGAG+AGG - chr5_4:41004046-41004065 None:intergenic 45.0%
ACACCCTGCTGAAATAGTCA+CGG + chr5_4:41004473-41004492 Msa0851020:intron 45.0%
CTTCCGTGACTATTTCAGCA+GGG - chr5_4:41004479-41004498 None:intergenic 45.0%
TCTTCCGTGACTATTTCAGC+AGG - chr5_4:41004480-41004499 None:intergenic 45.0%
ATCAACACGGAGTTCAAAGG+AGG + chr5_4:41004517-41004536 Msa0851020:intron 45.0%
AAGAATCTGCCAAGACGGAT+AGG + chr5_4:41004567-41004586 Msa0851020:intron 45.0%
GAATTTGGACCTATCCGTCT+TGG - chr5_4:41004579-41004598 None:intergenic 45.0%
!! AATCATTGGTGTCATGACCG+TGG - chr5_4:41004619-41004638 None:intergenic 45.0%
CAATGATTGCTACCAGCTCA+GGG + chr5_4:41004631-41004650 Msa0851020:intron 45.0%
! TCGAAGAGTTGATCAAGAGG+GGG + chr5_4:41004660-41004679 Msa0851020:CDS 45.0%
ATTCACCATGGAAAACCTCC+CGG + chr5_4:41004738-41004757 Msa0851020:intron 45.0%
TCTTAGGGGATTCACTTCAC+CGG - chr5_4:41004760-41004779 None:intergenic 45.0%
GAAGTGAATCCCCTAAGAAG+AGG + chr5_4:41004762-41004781 Msa0851020:intron 45.0%
ACGACGCTTATTACCTTCCT+CGG - chr5_4:41004815-41004834 None:intergenic 45.0%
! TAATAAGCGTCGTGGACAGA+GGG + chr5_4:41004822-41004841 Msa0851020:CDS 45.0%
TTTCTTCGTCGGTGAAACCT+AGG - chr5_4:41004981-41005000 None:intergenic 45.0%
AGGTTTCACCGACGAAGAAA+AGG + chr5_4:41004981-41005000 Msa0851020:CDS 45.0%
GACGAAGAAAAGGTGAACAG+AGG + chr5_4:41004991-41005010 Msa0851020:CDS 45.0%
TTCCCGCATTTCATCATCAC+AGG + chr5_4:41005027-41005046 Msa0851020:CDS 45.0%
! CCAATCACTTGTTCTGGTTG+GGG - chr5_4:41003051-41003070 None:intergenic 45.0%
GTCCAATCACTTGTTCTGGT+TGG - chr5_4:41003053-41003072 None:intergenic 45.0%
GGACTTAATCCTCACTCTGA+TGG + chr5_4:41003069-41003088 Msa0851020:CDS 45.0%
GTGTGGCAGATTCTAAGCAA+TGG + chr5_4:41003846-41003865 Msa0851020:intron 45.0%
TTGCTCTATGTTCGATGCTC+TGG - chr5_4:41003878-41003897 None:intergenic 45.0%
CTGCATTTCACAGTCCTCAT+AGG + chr5_4:41003931-41003950 Msa0851020:CDS 45.0%
GCATTTCACAGTCCTCATAG+GGG + chr5_4:41003933-41003952 Msa0851020:CDS 45.0%
AGTCCTCATAGGGGTGATAT+AGG + chr5_4:41003942-41003961 Msa0851020:CDS 45.0%
CAATGGATACCTCTCAAGCA+AGG + chr5_4:41004034-41004053 Msa0851020:CDS 45.0%
TCCCATTTACCTTGCTTGAG+AGG - chr5_4:41004046-41004065 None:intergenic 45.0%
ACACCCTGCTGAAATAGTCA+CGG + chr5_4:41004473-41004492 Msa0851020:intron 45.0%
CTTCCGTGACTATTTCAGCA+GGG - chr5_4:41004479-41004498 None:intergenic 45.0%
TCTTCCGTGACTATTTCAGC+AGG - chr5_4:41004480-41004499 None:intergenic 45.0%
ATCAACACGGAGTTCAAAGG+AGG + chr5_4:41004517-41004536 Msa0851020:intron 45.0%
AAGAATCTGCCAAGACGGAT+AGG + chr5_4:41004567-41004586 Msa0851020:intron 45.0%
GAATTTGGACCTATCCGTCT+TGG - chr5_4:41004579-41004598 None:intergenic 45.0%
!! AATCATTGGTGTCATGACCG+TGG - chr5_4:41004619-41004638 None:intergenic 45.0%
CAATGATTGCTACCAGCTCA+GGG + chr5_4:41004631-41004650 Msa0851020:intron 45.0%
! TCGAAGAGTTGATCAAGAGG+GGG + chr5_4:41004660-41004679 Msa0851020:CDS 45.0%
ATTCACCATGGAAAACCTCC+CGG + chr5_4:41004738-41004757 Msa0851020:intron 45.0%
TCTTAGGGGATTCACTTCAC+CGG - chr5_4:41004760-41004779 None:intergenic 45.0%
GAAGTGAATCCCCTAAGAAG+AGG + chr5_4:41004762-41004781 Msa0851020:intron 45.0%
ACGACGCTTATTACCTTCCT+CGG - chr5_4:41004815-41004834 None:intergenic 45.0%
! TAATAAGCGTCGTGGACAGA+GGG + chr5_4:41004822-41004841 Msa0851020:CDS 45.0%
TTTCTTCGTCGGTGAAACCT+AGG - chr5_4:41004981-41005000 None:intergenic 45.0%
AGGTTTCACCGACGAAGAAA+AGG + chr5_4:41004981-41005000 Msa0851020:CDS 45.0%
GACGAAGAAAAGGTGAACAG+AGG + chr5_4:41004991-41005010 Msa0851020:CDS 45.0%
TTCCCGCATTTCATCATCAC+AGG + chr5_4:41005027-41005046 Msa0851020:CDS 45.0%
!!! AGAAAATTTTATTAAAAAAA+GGG - chr5_4:41003711-41003730 None:intergenic 5.0%
!!! AGAAAATTTTATTAAAAAAA+GGG - chr5_4:41003711-41003730 None:intergenic 5.0%
! ACTTGTTCTGGTTGGGGACA+TGG - chr5_4:41003045-41003064 None:intergenic 50.0%
CCCCAACCAGAACAAGTGAT+TGG + chr5_4:41003048-41003067 Msa0851020:CDS 50.0%
GGGTATCTTGACATCCCAAC+TGG - chr5_4:41003770-41003789 None:intergenic 50.0%
!! GAGCAAAGGAAGGCATCAGA+GGG - chr5_4:41003790-41003809 None:intergenic 50.0%
!! AGAGCAAAGGAAGGCATCAG+AGG - chr5_4:41003791-41003810 None:intergenic 50.0%
GGACCTATATCACCCCTATG+AGG - chr5_4:41003948-41003967 None:intergenic 50.0%
!! GGAGTAACAAGACTTGGTGC+TGG - chr5_4:41003969-41003988 None:intergenic 50.0%
GGGTGTAGTCAGTGAATCAG+AGG - chr5_4:41004459-41004478 None:intergenic 50.0%
TGTCATGACCGTGGCATCAA+TGG - chr5_4:41004610-41004629 None:intergenic 50.0%
CCTGAGCTGGTAGCAATCAT+TGG - chr5_4:41004633-41004652 None:intergenic 50.0%
CCAATGATTGCTACCAGCTC+AGG + chr5_4:41004630-41004649 Msa0851020:intron 50.0%
CTTAGGGGATTCACTTCACC+GGG - chr5_4:41004759-41004778 None:intergenic 50.0%
TGGGGGAACACCTCTTCTTA+GGG - chr5_4:41004775-41004794 None:intergenic 50.0%
CGACGCTTATTACCTTCCTC+GGG - chr5_4:41004814-41004833 None:intergenic 50.0%
! GAGGAAGGTAATAAGCGTCG+TGG + chr5_4:41004814-41004833 Msa0851020:CDS 50.0%
! GTAATAAGCGTCGTGGACAG+AGG + chr5_4:41004821-41004840 Msa0851020:CDS 50.0%
! AATAAGCGTCGTGGACAGAG+GGG + chr5_4:41004823-41004842 Msa0851020:CDS 50.0%
ATTAGTGAAGTTCCGCGGAG+TGG - chr5_4:41004875-41004894 None:intergenic 50.0%
ACTCCGCGGAACTTCACTAA+TGG + chr5_4:41004874-41004893 Msa0851020:CDS 50.0%
! GTGCCATTAGTGAAGTTCCG+CGG - chr5_4:41004880-41004899 None:intergenic 50.0%
ACTTCACTAATGGCACGACC+AGG + chr5_4:41004884-41004903 Msa0851020:CDS 50.0%
GAGGAAATGTGCCCAACTCA+TGG + chr5_4:41004906-41004925 Msa0851020:CDS 50.0%
AGCGTGTACTGCCATGAGTT+GGG - chr5_4:41004920-41004939 None:intergenic 50.0%
TCGTCGGTGAAACCTAGGAT+GGG - chr5_4:41004976-41004995 None:intergenic 50.0%
TTCGTCGGTGAAACCTAGGA+TGG - chr5_4:41004977-41004996 None:intergenic 50.0%
! ACTTGTTCTGGTTGGGGACA+TGG - chr5_4:41003045-41003064 None:intergenic 50.0%
CCCCAACCAGAACAAGTGAT+TGG + chr5_4:41003048-41003067 Msa0851020:CDS 50.0%
GGGTATCTTGACATCCCAAC+TGG - chr5_4:41003770-41003789 None:intergenic 50.0%
!! GAGCAAAGGAAGGCATCAGA+GGG - chr5_4:41003790-41003809 None:intergenic 50.0%
!! AGAGCAAAGGAAGGCATCAG+AGG - chr5_4:41003791-41003810 None:intergenic 50.0%
GGACCTATATCACCCCTATG+AGG - chr5_4:41003948-41003967 None:intergenic 50.0%
!! GGAGTAACAAGACTTGGTGC+TGG - chr5_4:41003969-41003988 None:intergenic 50.0%
GGGTGTAGTCAGTGAATCAG+AGG - chr5_4:41004459-41004478 None:intergenic 50.0%
TGTCATGACCGTGGCATCAA+TGG - chr5_4:41004610-41004629 None:intergenic 50.0%
CCTGAGCTGGTAGCAATCAT+TGG - chr5_4:41004633-41004652 None:intergenic 50.0%
CCAATGATTGCTACCAGCTC+AGG + chr5_4:41004630-41004649 Msa0851020:intron 50.0%
CTTAGGGGATTCACTTCACC+GGG - chr5_4:41004759-41004778 None:intergenic 50.0%
TGGGGGAACACCTCTTCTTA+GGG - chr5_4:41004775-41004794 None:intergenic 50.0%
CGACGCTTATTACCTTCCTC+GGG - chr5_4:41004814-41004833 None:intergenic 50.0%
! GAGGAAGGTAATAAGCGTCG+TGG + chr5_4:41004814-41004833 Msa0851020:CDS 50.0%
! GTAATAAGCGTCGTGGACAG+AGG + chr5_4:41004821-41004840 Msa0851020:CDS 50.0%
! AATAAGCGTCGTGGACAGAG+GGG + chr5_4:41004823-41004842 Msa0851020:CDS 50.0%
ATTAGTGAAGTTCCGCGGAG+TGG - chr5_4:41004875-41004894 None:intergenic 50.0%
ACTCCGCGGAACTTCACTAA+TGG + chr5_4:41004874-41004893 Msa0851020:CDS 50.0%
! GTGCCATTAGTGAAGTTCCG+CGG - chr5_4:41004880-41004899 None:intergenic 50.0%
ACTTCACTAATGGCACGACC+AGG + chr5_4:41004884-41004903 Msa0851020:CDS 50.0%
GAGGAAATGTGCCCAACTCA+TGG + chr5_4:41004906-41004925 Msa0851020:CDS 50.0%
AGCGTGTACTGCCATGAGTT+GGG - chr5_4:41004920-41004939 None:intergenic 50.0%
TCGTCGGTGAAACCTAGGAT+GGG - chr5_4:41004976-41004995 None:intergenic 50.0%
TTCGTCGGTGAAACCTAGGA+TGG - chr5_4:41004977-41004996 None:intergenic 50.0%
! TGTTCTGGTTGGGGACATGG+AGG - chr5_4:41003042-41003061 None:intergenic 55.0%
AGGGCAACACCATCAGAGTG+AGG - chr5_4:41003081-41003100 None:intergenic 55.0%
GGAAGTTGAACCGCTTCACG+AGG + chr5_4:41004681-41004700 Msa0851020:CDS 55.0%
! AACCGCTTCACGAGGTACTC+CGG + chr5_4:41004689-41004708 Msa0851020:intron 55.0%
! CTTCACCGGGAGGTTTTCCA+TGG - chr5_4:41004746-41004765 None:intergenic 55.0%
GGGGGAACACCTCTTCTTAG+GGG - chr5_4:41004774-41004793 None:intergenic 55.0%
CTGGGGGAACACCTCTTCTT+AGG - chr5_4:41004776-41004795 None:intergenic 55.0%
AGGGGACAAGGAGCCATCAT+GGG + chr5_4:41004841-41004860 Msa0851020:CDS 55.0%
AGTGGCGAATCCTCCCATGA+TGG - chr5_4:41004857-41004876 None:intergenic 55.0%
TCACTAATGGCACGACCAGG+AGG + chr5_4:41004887-41004906 Msa0851020:CDS 55.0%
GAGTTGGGCACATTTCCTCC+TGG - chr5_4:41004905-41004924 None:intergenic 55.0%
CAGCGTGTACTGCCATGAGT+TGG - chr5_4:41004921-41004940 None:intergenic 55.0%
CATGGCAGTACACGCTGCTA+CGG + chr5_4:41004924-41004943 Msa0851020:CDS 55.0%
GGGACAACTAGACCCATCCT+AGG + chr5_4:41004961-41004980 Msa0851020:CDS 55.0%
ACCTTAGGGCATGACGTACC+AGG + chr5_4:41005051-41005070 Msa0851020:CDS 55.0%
ACCTGGTACGTCATGCCCTA+AGG - chr5_4:41005055-41005074 None:intergenic 55.0%
! TGTTCTGGTTGGGGACATGG+AGG - chr5_4:41003042-41003061 None:intergenic 55.0%
AGGGCAACACCATCAGAGTG+AGG - chr5_4:41003081-41003100 None:intergenic 55.0%
GGAAGTTGAACCGCTTCACG+AGG + chr5_4:41004681-41004700 Msa0851020:CDS 55.0%
! AACCGCTTCACGAGGTACTC+CGG + chr5_4:41004689-41004708 Msa0851020:intron 55.0%
! CTTCACCGGGAGGTTTTCCA+TGG - chr5_4:41004746-41004765 None:intergenic 55.0%
GGGGGAACACCTCTTCTTAG+GGG - chr5_4:41004774-41004793 None:intergenic 55.0%
CTGGGGGAACACCTCTTCTT+AGG - chr5_4:41004776-41004795 None:intergenic 55.0%
AGGGGACAAGGAGCCATCAT+GGG + chr5_4:41004841-41004860 Msa0851020:CDS 55.0%
AGTGGCGAATCCTCCCATGA+TGG - chr5_4:41004857-41004876 None:intergenic 55.0%
TCACTAATGGCACGACCAGG+AGG + chr5_4:41004887-41004906 Msa0851020:CDS 55.0%
GAGTTGGGCACATTTCCTCC+TGG - chr5_4:41004905-41004924 None:intergenic 55.0%
CAGCGTGTACTGCCATGAGT+TGG - chr5_4:41004921-41004940 None:intergenic 55.0%
CATGGCAGTACACGCTGCTA+CGG + chr5_4:41004924-41004943 Msa0851020:CDS 55.0%
GGGACAACTAGACCCATCCT+AGG + chr5_4:41004961-41004980 Msa0851020:CDS 55.0%
ACCTTAGGGCATGACGTACC+AGG + chr5_4:41005051-41005070 Msa0851020:CDS 55.0%
ACCTGGTACGTCATGCCCTA+AGG - chr5_4:41005055-41005074 None:intergenic 55.0%
CTTCGATTGCGTCCCTGAGC+TGG - chr5_4:41004646-41004665 None:intergenic 60.0%
AGGGGATTCACTTCACCGGG+AGG - chr5_4:41004756-41004775 None:intergenic 60.0%
!! GAAGAGGTGTTCCCCCAGAC+AGG + chr5_4:41004778-41004797 Msa0851020:intron 60.0%
GCGTGACTCTTCCTGTCTGG+GGG - chr5_4:41004792-41004811 None:intergenic 60.0%
GGCGTGACTCTTCCTGTCTG+GGG - chr5_4:41004793-41004812 None:intergenic 60.0%
GGGCGTGACTCTTCCTGTCT+GGG - chr5_4:41004794-41004813 None:intergenic 60.0%
GAGGGGACAAGGAGCCATCA+TGG + chr5_4:41004840-41004859 Msa0851020:CDS 60.0%
GGACAAGGAGCCATCATGGG+AGG + chr5_4:41004844-41004863 Msa0851020:CDS 60.0%
GCTGCTACGGCGAGACCAAA+GGG + chr5_4:41004937-41004956 Msa0851020:CDS 60.0%
GGTCTAGTTGTCCCGCCCTT+TGG - chr5_4:41004955-41004974 None:intergenic 60.0%
CTTCGATTGCGTCCCTGAGC+TGG - chr5_4:41004646-41004665 None:intergenic 60.0%
AGGGGATTCACTTCACCGGG+AGG - chr5_4:41004756-41004775 None:intergenic 60.0%
!! GAAGAGGTGTTCCCCCAGAC+AGG + chr5_4:41004778-41004797 Msa0851020:intron 60.0%
GCGTGACTCTTCCTGTCTGG+GGG - chr5_4:41004792-41004811 None:intergenic 60.0%
GGCGTGACTCTTCCTGTCTG+GGG - chr5_4:41004793-41004812 None:intergenic 60.0%
GGGCGTGACTCTTCCTGTCT+GGG - chr5_4:41004794-41004813 None:intergenic 60.0%
GAGGGGACAAGGAGCCATCA+TGG + chr5_4:41004840-41004859 Msa0851020:CDS 60.0%
GGACAAGGAGCCATCATGGG+AGG + chr5_4:41004844-41004863 Msa0851020:CDS 60.0%
GCTGCTACGGCGAGACCAAA+GGG + chr5_4:41004937-41004956 Msa0851020:CDS 60.0%
GGTCTAGTTGTCCCGCCCTT+TGG - chr5_4:41004955-41004974 None:intergenic 60.0%
! GGCCGGAGTACCTCGTGAAG+CGG - chr5_4:41004694-41004713 None:intergenic 65.0%
CGGGCGTGACTCTTCCTGTC+TGG - chr5_4:41004795-41004814 None:intergenic 65.0%
GACAGGAAGAGTCACGCCCG+AGG + chr5_4:41004795-41004814 Msa0851020:intron 65.0%
GGAAGAGTCACGCCCGAGGA+AGG + chr5_4:41004799-41004818 Msa0851020:CDS 65.0%
CGTCGTGGACAGAGGGGACA+AGG + chr5_4:41004829-41004848 Msa0851020:CDS 65.0%
TGGGAGGATTCGCCACTCCG+CGG + chr5_4:41004860-41004879 Msa0851020:CDS 65.0%
CGCTGCTACGGCGAGACCAA+AGG + chr5_4:41004936-41004955 Msa0851020:CDS 65.0%
GCTACGGCGAGACCAAAGGG+CGG + chr5_4:41004940-41004959 Msa0851020:CDS 65.0%
CTACGGCGAGACCAAAGGGC+GGG + chr5_4:41004941-41004960 Msa0851020:CDS 65.0%
! GGCCGGAGTACCTCGTGAAG+CGG - chr5_4:41004694-41004713 None:intergenic 65.0%
CGGGCGTGACTCTTCCTGTC+TGG - chr5_4:41004795-41004814 None:intergenic 65.0%
GACAGGAAGAGTCACGCCCG+AGG + chr5_4:41004795-41004814 Msa0851020:intron 65.0%
GGAAGAGTCACGCCCGAGGA+AGG + chr5_4:41004799-41004818 Msa0851020:CDS 65.0%
CGTCGTGGACAGAGGGGACA+AGG + chr5_4:41004829-41004848 Msa0851020:CDS 65.0%
TGGGAGGATTCGCCACTCCG+CGG + chr5_4:41004860-41004879 Msa0851020:CDS 65.0%
CGCTGCTACGGCGAGACCAA+AGG + chr5_4:41004936-41004955 Msa0851020:CDS 65.0%
GCTACGGCGAGACCAAAGGG+CGG + chr5_4:41004940-41004959 Msa0851020:CDS 65.0%
CTACGGCGAGACCAAAGGGC+GGG + chr5_4:41004941-41004960 Msa0851020:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 41002827 41005080 41002827 ID=Msa0851020;Name=Msa0851020
chr5_4 mRNA 41002827 41005080 41002827 ID=Msa0851020-mRNA-1;Parent=Msa0851020;Name=Msa0851020-mRNA-1;_AED=0.31;_eAED=0.31;_QI=128|0.33|0.25|0.5|1|1|4|0|266
chr5_4 exon 41002827 41003218 41002827 ID=Msa0851020-mRNA-1:exon:12926;Parent=Msa0851020-mRNA-1
chr5_4 exon 41003855 41004055 41003855 ID=Msa0851020-mRNA-1:exon:12927;Parent=Msa0851020-mRNA-1
chr5_4 exon 41004652 41004702 41004652 ID=Msa0851020-mRNA-1:exon:12928;Parent=Msa0851020-mRNA-1
chr5_4 exon 41004796 41005080 41004796 ID=Msa0851020-mRNA-1:exon:12929;Parent=Msa0851020-mRNA-1
chr5_4 five_prime_UTR 41002827 41002954 41002827 ID=Msa0851020-mRNA-1:five_prime_utr;Parent=Msa0851020-mRNA-1
chr5_4 CDS 41002955 41003218 41002955 ID=Msa0851020-mRNA-1:cds;Parent=Msa0851020-mRNA-1
chr5_4 CDS 41003855 41004055 41003855 ID=Msa0851020-mRNA-1:cds;Parent=Msa0851020-mRNA-1
chr5_4 CDS 41004652 41004702 41004652 ID=Msa0851020-mRNA-1:cds;Parent=Msa0851020-mRNA-1
chr5_4 CDS 41004796 41005080 41004796 ID=Msa0851020-mRNA-1:cds;Parent=Msa0851020-mRNA-1
Gene Sequence

>Msa0851020

ATGACTAAAGCTCTAAAGCTTCAACCAAATGAATTGCTAGATTTATTTGAAGAGATGGATCAGTCAATAAGGATGAATTACTATCCTCCATGTCCCCAACCAGAACAAGTGATTGGACTTAATCCTCACTCTGATGGTGTTGCCCTTACCATCCTTCTTGAAGTAAATGAAATTCAAGGACTTCAAATCAAAAAAGATGGAATATGGATTCCCATCAAACCCCTTTCTAATGCTTTTGTGGTCAATATTGGAGATATGTTGGAGATTCTAAGCAATGGAACATACCAGAGCATCGAACATAGAGCAACAGTAAATTCAGAGAAGGAGAGGATCTCATTTGCTGCATTTCACAGTCCTCATAGGGGTGATATAGGTCCAGCACCAAGTCTTGTTACTCCTAAAAGTCCTGCATTATTTAAAACCATTTCAATTGCAGATTACGTCAATGGATACCTCTCAAGCAAGGGACGCAATCGAAGAGTTGATCAAGAGGGGGAAGTTGAACCGCTTCACGAGACAGGAAGAGTCACGCCCGAGGAAGGTAATAAGCGTCGTGGACAGAGGGGACAAGGAGCCATCATGGGAGGATTCGCCACTCCGCGGAACTTCACTAATGGCACGACCAGGAGGAAATGTGCCCAACTCATGGCAGTACACGCTGCTACGGCGAGACCAAAGGGCGGGACAACTAGACCCATCCTAGGTTTCACCGACGAAGAAAAGGTGAACAGAGGCTCCAATGAAATGTTCCCGCATTTCATCATCACAGGAACCTTAGGGCATGACGTACCAGGTGCATAA
Protein sequence

>Msa0851020

MTKALKLQPNELLDLFEEMDQSIRMNYYPPCPQPEQVIGLNPHSDGVALTILLEVNEIQGLQIKKDGIWIPIKPLSNAFVVNIGDMLEILSNGTYQSIEHRATVNSEKERISFAAFHSPHRGDIGPAPSLVTPKSPALFKTISIADYVNGYLSSKGRNRRVDQEGEVEPLHETGRVTPEEGNKRRGQRGQGAIMGGFATPRNFTNGTTRRKCAQLMAVHAATARPKGGTTRPILGFTDEEKVNRGSNEMFPHFIITGTLGHDVPGA*