AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1033920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033920 MtrunA17_Chr7g0259151 99.296 142 1 0 1 142 1 142 1.80e-100 284
Msa1033920 MtrunA17_Chr7g0268831 85.211 142 21 0 1 142 1 142 9.57e-86 246
Msa1033920 MtrunA17_Chr7g0273351 88.060 134 16 0 9 142 6 139 3.99e-83 240
Msa1033920 MtrunA17_Chr7g0273331 88.060 134 16 0 9 142 62 195 6.66e-82 239
Msa1033920 MtrunA17_Chr7g0273341 77.778 135 19 2 8 142 44 167 4.27e-67 200
Msa1033920 MtrunA17_Chr2g0319191 80.328 122 20 1 13 130 3 124 5.44e-67 199
Msa1033920 MtrunA17_Chr2g0319181 81.818 121 14 2 13 127 3 121 2.97e-66 197
Msa1033920 MtrunA17_Chr7g0272611 76.271 118 28 0 12 129 16 133 6.49e-60 181
Msa1033920 MtrunA17_Chr2g0327951 79.439 107 22 0 21 127 58 164 3.84e-58 178
Msa1033920 MtrunA17_Chr4g0035621 80.189 106 21 0 22 127 24 129 7.96e-58 176
Msa1033920 MtrunA17_Chr4g0031041 79.439 107 22 0 21 127 17 123 9.66e-58 176
Msa1033920 MtrunA17_Chr4g0031001 79.245 106 22 0 22 127 24 129 2.29e-57 175
Msa1033920 MtrunA17_Chr4g0031651 79.245 106 22 0 22 127 24 129 2.58e-57 175
Msa1033920 MtrunA17_Chr2g0327931 79.245 106 22 0 22 127 23 128 3.16e-57 175
Msa1033920 MtrunA17_Chr8g0379311 79.245 106 22 0 22 127 24 129 4.03e-57 174
Msa1033920 MtrunA17_Chr4g0032301 79.245 106 22 0 22 127 24 129 4.36e-57 174
Msa1033920 MtrunA17_Chr6g0449661 65.421 107 28 2 22 127 85 183 1.11e-40 134
Msa1033920 MtrunA17_Chr3g0119971 65.094 106 28 2 23 127 81 178 4.28e-40 133
Msa1033920 MtrunA17_Chr1g0148961 61.682 107 39 2 21 126 25 130 2.73e-38 126
Msa1033920 MtrunA17_Chr1g0148951 61.682 107 39 2 21 126 25 130 2.73e-38 126
Msa1033920 MtrunA17_Chr1g0211651 54.688 128 55 3 1 126 1 127 1.14e-37 125
Msa1033920 MtrunA17_Chr1g0184901 55.469 128 44 4 11 126 4 130 7.12e-37 123
Msa1033920 MtrunA17_Chr4g0031031 77.027 74 17 0 43 116 10 83 5.61e-35 117
Msa1033920 MtrunA17_Chr4g0024701 49.533 107 34 2 22 128 26 112 1.60e-25 93.6
Msa1033920 MtrunA17_Chr4g0000531 81.250 48 9 0 83 130 5 52 1.43e-22 84.3
Msa1033920 MtrunA17_Chr1g0183701 57.143 63 27 0 65 127 30 92 6.63e-18 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033920 AT1G54690.1 85.211 142 21 0 1 142 1 142 1.90e-85 246
Msa1033920 AT1G08880.1 83.803 142 23 0 1 142 1 142 1.58e-84 244
Msa1033920 AT4G27230.2 79.839 124 21 1 13 132 3 126 7.93e-67 199
Msa1033920 AT4G27230.1 79.839 124 21 1 13 132 3 126 7.93e-67 199
Msa1033920 AT5G54640.1 79.032 124 22 1 13 132 3 126 2.99e-66 197
Msa1033920 AT3G20670.1 79.032 124 22 1 13 132 3 126 2.12e-65 195
Msa1033920 AT1G51060.1 77.419 124 24 1 13 132 3 126 2.48e-65 195
Msa1033920 AT5G59870.1 72.059 136 32 3 4 134 2 136 1.41e-61 186
Msa1033920 AT5G27670.1 73.600 125 29 1 7 127 6 130 6.78e-57 174
Msa1033920 AT5G02560.1 78.505 107 23 0 21 127 23 129 1.91e-56 173
Msa1033920 AT5G02560.2 64.122 131 23 1 21 127 23 153 1.56e-50 159
Msa1033920 AT2G38810.1 62.037 108 37 3 21 126 27 132 2.10e-37 124
Msa1033920 AT2G38810.4 62.037 108 37 3 21 126 27 132 2.10e-37 124
Msa1033920 AT2G38810.3 62.037 108 37 3 21 126 27 132 2.10e-37 124
Msa1033920 AT2G38810.2 62.037 108 37 3 21 126 27 132 2.10e-37 124
Msa1033920 AT1G52740.1 60.000 105 40 2 23 126 27 130 7.01e-37 123
Msa1033920 AT3G54560.1 60.377 106 38 3 23 126 29 132 4.80e-36 121
Msa1033920 AT3G54560.2 60.377 106 38 3 23 126 29 132 4.80e-36 121
Msa1033920 AT4G13570.1 50.538 93 42 3 30 120 28 118 1.07e-21 84.3
Msa1033920 AT4G13570.2 50.000 92 42 3 31 120 35 124 3.92e-21 82.8

Find 65 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAACGGACTTGGTGGTTT+TGG 0.182132 7_1:+69302487 None:intergenic
TTCTTTCCAGCCACCTTCTT+TGG 0.190245 7_1:+69302076 None:intergenic
TTTGCCCCTTCCACCTTTCT+TGG 0.205738 7_1:+69302511 None:intergenic
GCTGGAAAGAAGGGAGAAAT+TGG 0.339055 7_1:-69302064 Msa1033920:CDS
CCTTCTTTGGCAACAAAGTC+TGG 0.341613 7_1:+69302089 None:intergenic
TGTTGGATCGTTAAAATGTT+AGG 0.342558 7_1:-69301999 Msa1033920:three_prime_UTR
TAGGGGTTTAATGTAGCATT+TGG 0.358115 7_1:-69302022 Msa1033920:three_prime_UTR
CGATGCGGCCAACGGGGAAC+TGG 0.364040 7_1:+69302444 None:intergenic
ACATCAAAGTACACTCTCTT+TGG 0.365869 7_1:+69302869 None:intergenic
AGAACGGCGGAGAGGTAAAC+AGG 0.367840 7_1:+69302371 None:intergenic
GTTTCGTTCTTGATTCTGAT+TGG 0.382483 7_1:+69302650 None:intergenic
AACAAAGTCTGGTGAATGTT+AGG 0.388717 7_1:+69302100 None:intergenic
TATTCTCAACGTGTTGGATC+TGG 0.390278 7_1:-69302398 Msa1033920:CDS
GCTTGATCTGGAAACGGACT+TGG 0.398049 7_1:+69302478 None:intergenic
TGAAGAATTGAGCAAATTGT+TGG 0.398697 7_1:-69302155 Msa1033920:CDS
GTTGGCTTTGGTTTATATAG+AGG 0.398990 7_1:+69302628 None:intergenic
AAGCGAGCGATGCGGCCAAC+GGG 0.403212 7_1:+69302437 None:intergenic
GAGAATAACGACCTGCTTTG+AGG 0.406903 7_1:+69302414 None:intergenic
CCAGACTTTGTTGCCAAAGA+AGG 0.415982 7_1:-69302089 Msa1033920:CDS
GGCTTTGCTTGATCTGGAAA+CGG 0.440381 7_1:+69302472 None:intergenic
GAGACCGGCTTTGCTTGATC+TGG 0.448607 7_1:+69302466 None:intergenic
AAGTTTAATTGAGTTGGCTT+TGG 0.455144 7_1:+69302616 None:intergenic
CGTTCCTCACAGCTAGTTGA+AGG 0.456555 7_1:+69302179 None:intergenic
TTTAATGTAGCATTTGGTGT+TGG 0.463658 7_1:-69302016 Msa1033920:three_prime_UTR
AAAGAAGGTGGCTGGAAAGA+AGG 0.474142 7_1:-69302074 Msa1033920:CDS
GATTAGGTTAGGATTAATGT+TGG 0.482420 7_1:-69301922 Msa1033920:three_prime_UTR
TTGTTGCCAAAGAAGGTGGC+TGG 0.488184 7_1:-69302082 Msa1033920:CDS
AGAAATTGGATCTGTTAGTC+AGG 0.492158 7_1:-69302050 Msa1033920:CDS
ATCGCTCGCTTCCTCAAAGC+AGG 0.500822 7_1:-69302425 Msa1033920:CDS
GAAGAATTGAGCAAATTGTT+GGG 0.504162 7_1:-69302154 Msa1033920:CDS
GTTGTGAAGTTTAATTGAGT+TGG 0.512047 7_1:+69302610 None:intergenic
TGATTCTGATTGGCTTAGAG+AGG 0.517754 7_1:+69302660 None:intergenic
TGATCTGGAAACGGACTTGG+TGG 0.521894 7_1:+69302481 None:intergenic
CACGCCAGCGAAACTTGAAA+AGG 0.523341 7_1:-69302758 Msa1033920:five_prime_UTR
GCCAACGGGGAACTGGAGAC+CGG 0.528668 7_1:+69302451 None:intergenic
CAACAACCAAGAAAGGTGGA+AGG 0.537155 7_1:-69302517 Msa1033920:CDS
GAAGCGAGCGATGCGGCCAA+CGG 0.540733 7_1:+69302436 None:intergenic
ACAGCTAGTTGAAGGTGCCT+TGG 0.544219 7_1:+69302187 None:intergenic
AACAACCAAGAAAGGTGGAA+GGG 0.559634 7_1:-69302516 Msa1033920:CDS
GCAACAGCAACAACCAAGAA+AGG 0.559755 7_1:-69302524 Msa1033920:CDS
GGTCGTTATTCTCAACGTGT+TGG 0.559902 7_1:-69302404 Msa1033920:CDS
GGACATGTGACTATTGCTAA+TGG 0.560318 7_1:-69302133 Msa1033920:CDS
ACAACCAAGAAAGGTGGAAG+GGG 0.560784 7_1:-69302515 Msa1033920:CDS
GACTTTGTTGCCAAAGAAGG+TGG 0.566455 7_1:-69302086 Msa1033920:CDS
AAGAAGGTGGCTGGAAAGAA+GGG 0.567889 7_1:-69302073 Msa1033920:CDS
GCCGGTCTCCAGTTCCCCGT+TGG 0.568530 7_1:-69302452 Msa1033920:CDS
GTTTCCAGATCAAGCAAAGC+CGG 0.580006 7_1:-69302470 Msa1033920:CDS
GGCGCAGAGGTATTCAAGAA+CGG 0.601101 7_1:+69302355 None:intergenic
CAAGGGATAACAAGAAGACA+AGG 0.618509 7_1:-69302216 Msa1033920:CDS
AATTGGCTGGTAATGCTGCA+AGG 0.630027 7_1:-69302234 Msa1033920:CDS
AGCGAGCGATGCGGCCAACG+GGG 0.630212 7_1:+69302438 None:intergenic
TGTTTATACTAGCAATAGAG+AGG 0.630482 7_1:-69302849 Msa1033920:five_prime_UTR
ATTGGCTGGTAATGCTGCAA+GGG 0.637236 7_1:-69302233 Msa1033920:CDS
ACAGCAACAACCAAGAAAGG+TGG 0.649404 7_1:-69302521 Msa1033920:CDS
CTTTGAGGAAGCGAGCGATG+CGG 0.656929 7_1:+69302429 None:intergenic
TCTTGAATACCTCTGCGCCG+AGG 0.661590 7_1:-69302351 Msa1033920:intron
CATGTGACTATTGCTAATGG+TGG 0.673088 7_1:-69302130 Msa1033920:CDS
GAACGGCGGAGAGGTAAACA+GGG 0.687773 7_1:+69302372 None:intergenic
GGTATTCAAGAACGGCGGAG+AGG 0.689904 7_1:+69302363 None:intergenic
GGCACCTTCAACTAGCTGTG+AGG 0.707498 7_1:-69302183 Msa1033920:CDS
AGAAGACAAGGATTGTACCA+AGG 0.714311 7_1:-69302204 Msa1033920:CDS
TGGCTTAGAGAGGTTTCACG+CGG 0.717037 7_1:+69302670 None:intergenic
TTTCACGCGGATCGCCAACG+TGG 0.727732 7_1:+69302683 None:intergenic
GCAGAGGTATTCAAGAACGG+CGG 0.737402 7_1:+69302358 None:intergenic
AACGGCGGAGAGGTAAACAG+GGG 0.752615 7_1:+69302373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACCGTTTATATTAATTTT+TGG - chr7_1:69302629-69302648 Msa1033920:five_prime_UTR 15.0%
!!! AACCGTTTATATTAATTTTT+GGG - chr7_1:69302630-69302649 Msa1033920:five_prime_UTR 15.0%
!!! TAACCGTTTATATTAATTTT+TGG - chr7_1:69302629-69302648 Msa1033920:five_prime_UTR 15.0%
!!! AACCGTTTATATTAATTTTT+GGG - chr7_1:69302630-69302649 Msa1033920:five_prime_UTR 15.0%
!! TTCAAAACAGAAAAAAACAA+TGG - chr7_1:69302346-69302365 Msa1033920:intron 20.0%
!! CACCCAAAAATTAATATAAA+CGG + chr7_1:69302635-69302654 None:intergenic 20.0%
!! TTCAAAACAGAAAAAAACAA+TGG - chr7_1:69302346-69302365 Msa1033920:intron 20.0%
!! CACCCAAAAATTAATATAAA+CGG + chr7_1:69302635-69302654 None:intergenic 20.0%
!!! CGTTTATATTAATTTTTGGG+TGG - chr7_1:69302633-69302652 Msa1033920:five_prime_UTR 25.0%
!!! ATATTAATTTTTGGGTGGTT+AGG - chr7_1:69302638-69302657 Msa1033920:five_prime_UTR 25.0%
!!! TGTGTTCTTATTTTGAGATT+AGG - chr7_1:69302963-69302982 Msa1033920:five_prime_UTR 25.0%
!!! TCTTATTTTGAGATTAGGTT+AGG - chr7_1:69302968-69302987 Msa1033920:five_prime_UTR 25.0%
!!! CGTTTATATTAATTTTTGGG+TGG - chr7_1:69302633-69302652 Msa1033920:five_prime_UTR 25.0%
!!! ATATTAATTTTTGGGTGGTT+AGG - chr7_1:69302638-69302657 Msa1033920:five_prime_UTR 25.0%
!!! TGTGTTCTTATTTTGAGATT+AGG - chr7_1:69302963-69302982 Msa1033920:five_prime_UTR 25.0%
!!! TCTTATTTTGAGATTAGGTT+AGG - chr7_1:69302968-69302987 Msa1033920:five_prime_UTR 25.0%
TGTTTATACTAGCAATAGAG+AGG - chr7_1:69302052-69302071 Msa1033920:CDS 30.0%
!!! AAACAAGTTTGAGTTTTGAG+CGG + chr7_1:69302191-69302210 None:intergenic 30.0%
!!! CAAAACTCAAACTTGTTTTG+CGG - chr7_1:69302193-69302212 Msa1033920:CDS 30.0%
!! AAGTTTAATTGAGTTGGCTT+TGG + chr7_1:69302288-69302307 None:intergenic 30.0%
GTTGTGAAGTTTAATTGAGT+TGG + chr7_1:69302294-69302313 None:intergenic 30.0%
AAGGCAAAGAAAAATTACCT+CGG + chr7_1:69302570-69302589 None:intergenic 30.0%
AAAATAACACTCGAGGATTA+AGG + chr7_1:69302589-69302608 None:intergenic 30.0%
TGAAGAATTGAGCAAATTGT+TGG - chr7_1:69302746-69302765 Msa1033920:five_prime_UTR 30.0%
GAAGAATTGAGCAAATTGTT+GGG - chr7_1:69302747-69302766 Msa1033920:five_prime_UTR 30.0%
!! TTTAATGTAGCATTTGGTGT+TGG - chr7_1:69302885-69302904 Msa1033920:five_prime_UTR 30.0%
TGTTGGATCGTTAAAATGTT+AGG - chr7_1:69302902-69302921 Msa1033920:five_prime_UTR 30.0%
GATTAGGTTAGGATTAATGT+TGG - chr7_1:69302979-69302998 Msa1033920:five_prime_UTR 30.0%
TGTTTATACTAGCAATAGAG+AGG - chr7_1:69302052-69302071 Msa1033920:CDS 30.0%
!!! AAACAAGTTTGAGTTTTGAG+CGG + chr7_1:69302191-69302210 None:intergenic 30.0%
!!! CAAAACTCAAACTTGTTTTG+CGG - chr7_1:69302193-69302212 Msa1033920:CDS 30.0%
!! AAGTTTAATTGAGTTGGCTT+TGG + chr7_1:69302288-69302307 None:intergenic 30.0%
GTTGTGAAGTTTAATTGAGT+TGG + chr7_1:69302294-69302313 None:intergenic 30.0%
AAGGCAAAGAAAAATTACCT+CGG + chr7_1:69302570-69302589 None:intergenic 30.0%
AAAATAACACTCGAGGATTA+AGG + chr7_1:69302589-69302608 None:intergenic 30.0%
TGAAGAATTGAGCAAATTGT+TGG - chr7_1:69302746-69302765 Msa1033920:five_prime_UTR 30.0%
GAAGAATTGAGCAAATTGTT+GGG - chr7_1:69302747-69302766 Msa1033920:five_prime_UTR 30.0%
!! TTTAATGTAGCATTTGGTGT+TGG - chr7_1:69302885-69302904 Msa1033920:five_prime_UTR 30.0%
TGTTGGATCGTTAAAATGTT+AGG - chr7_1:69302902-69302921 Msa1033920:five_prime_UTR 30.0%
GATTAGGTTAGGATTAATGT+TGG - chr7_1:69302979-69302998 Msa1033920:five_prime_UTR 30.0%
ACATCAAAGTACACTCTCTT+TGG + chr7_1:69302035-69302054 None:intergenic 35.0%
!!! AACAAGTTTGAGTTTTGAGC+GGG + chr7_1:69302190-69302209 None:intergenic 35.0%
GTTTCGTTCTTGATTCTGAT+TGG + chr7_1:69302254-69302273 None:intergenic 35.0%
!! GTTGGCTTTGGTTTATATAG+AGG + chr7_1:69302276-69302295 None:intergenic 35.0%
CAAACTCAAAATAACACTCG+AGG + chr7_1:69302596-69302615 None:intergenic 35.0%
!!! ATTTTTGGGTGGTTAGGTTT+TGG - chr7_1:69302644-69302663 Msa1033920:five_prime_UTR 35.0%
AACAAAGTCTGGTGAATGTT+AGG + chr7_1:69302804-69302823 None:intergenic 35.0%
AGAAATTGGATCTGTTAGTC+AGG - chr7_1:69302851-69302870 Msa1033920:five_prime_UTR 35.0%
! ATCTGTTAGTCAGGAGTTTT+AGG - chr7_1:69302860-69302879 Msa1033920:five_prime_UTR 35.0%
! TCTGTTAGTCAGGAGTTTTA+GGG - chr7_1:69302861-69302880 Msa1033920:five_prime_UTR 35.0%
TAGGGGTTTAATGTAGCATT+TGG - chr7_1:69302879-69302898 Msa1033920:five_prime_UTR 35.0%
ACATCAAAGTACACTCTCTT+TGG + chr7_1:69302035-69302054 None:intergenic 35.0%
!!! AACAAGTTTGAGTTTTGAGC+GGG + chr7_1:69302190-69302209 None:intergenic 35.0%
GTTTCGTTCTTGATTCTGAT+TGG + chr7_1:69302254-69302273 None:intergenic 35.0%
!! GTTGGCTTTGGTTTATATAG+AGG + chr7_1:69302276-69302295 None:intergenic 35.0%
CAAACTCAAAATAACACTCG+AGG + chr7_1:69302596-69302615 None:intergenic 35.0%
!!! ATTTTTGGGTGGTTAGGTTT+TGG - chr7_1:69302644-69302663 Msa1033920:five_prime_UTR 35.0%
AACAAAGTCTGGTGAATGTT+AGG + chr7_1:69302804-69302823 None:intergenic 35.0%
AGAAATTGGATCTGTTAGTC+AGG - chr7_1:69302851-69302870 Msa1033920:five_prime_UTR 35.0%
! ATCTGTTAGTCAGGAGTTTT+AGG - chr7_1:69302860-69302879 Msa1033920:five_prime_UTR 35.0%
! TCTGTTAGTCAGGAGTTTTA+GGG - chr7_1:69302861-69302880 Msa1033920:five_prime_UTR 35.0%
TAGGGGTTTAATGTAGCATT+TGG - chr7_1:69302879-69302898 Msa1033920:five_prime_UTR 35.0%
!! TTTTGATTGCCGCTCAAAAG+CGG - chr7_1:69302086-69302105 Msa1033920:CDS 40.0%
!! TGATTCTGATTGGCTTAGAG+AGG + chr7_1:69302244-69302263 None:intergenic 40.0%
AACAACCAAGAAAGGTGGAA+GGG - chr7_1:69302385-69302404 Msa1033920:CDS 40.0%
TATTCTCAACGTGTTGGATC+TGG - chr7_1:69302503-69302522 Msa1033920:CDS 40.0%
CAAGGGATAACAAGAAGACA+AGG - chr7_1:69302685-69302704 Msa1033920:five_prime_UTR 40.0%
AGAAGACAAGGATTGTACCA+AGG - chr7_1:69302697-69302716 Msa1033920:five_prime_UTR 40.0%
GGACATGTGACTATTGCTAA+TGG - chr7_1:69302768-69302787 Msa1033920:five_prime_UTR 40.0%
CATGTGACTATTGCTAATGG+TGG - chr7_1:69302771-69302790 Msa1033920:five_prime_UTR 40.0%
!! CTGTTAGTCAGGAGTTTTAG+GGG - chr7_1:69302862-69302881 Msa1033920:five_prime_UTR 40.0%
!! TTTTGATTGCCGCTCAAAAG+CGG - chr7_1:69302086-69302105 Msa1033920:CDS 40.0%
!! TGATTCTGATTGGCTTAGAG+AGG + chr7_1:69302244-69302263 None:intergenic 40.0%
AACAACCAAGAAAGGTGGAA+GGG - chr7_1:69302385-69302404 Msa1033920:CDS 40.0%
TATTCTCAACGTGTTGGATC+TGG - chr7_1:69302503-69302522 Msa1033920:CDS 40.0%
CAAGGGATAACAAGAAGACA+AGG - chr7_1:69302685-69302704 Msa1033920:five_prime_UTR 40.0%
AGAAGACAAGGATTGTACCA+AGG - chr7_1:69302697-69302716 Msa1033920:five_prime_UTR 40.0%
GGACATGTGACTATTGCTAA+TGG - chr7_1:69302768-69302787 Msa1033920:five_prime_UTR 40.0%
CATGTGACTATTGCTAATGG+TGG - chr7_1:69302771-69302790 Msa1033920:five_prime_UTR 40.0%
!! CTGTTAGTCAGGAGTTTTAG+GGG - chr7_1:69302862-69302881 Msa1033920:five_prime_UTR 40.0%
!! TTCGTGAATCCGCTTTTGAG+CGG + chr7_1:69302098-69302117 None:intergenic 45.0%
GCAACAGCAACAACCAAGAA+AGG - chr7_1:69302377-69302396 Msa1033920:CDS 45.0%
ACAGCAACAACCAAGAAAGG+TGG - chr7_1:69302380-69302399 Msa1033920:CDS 45.0%
CAACAACCAAGAAAGGTGGA+AGG - chr7_1:69302384-69302403 Msa1033920:CDS 45.0%
ACAACCAAGAAAGGTGGAAG+GGG - chr7_1:69302386-69302405 Msa1033920:CDS 45.0%
!!! GAAACGGACTTGGTGGTTTT+GGG + chr7_1:69302416-69302435 None:intergenic 45.0%
GGCTTTGCTTGATCTGGAAA+CGG + chr7_1:69302432-69302451 None:intergenic 45.0%
GTTTCCAGATCAAGCAAAGC+CGG - chr7_1:69302431-69302450 Msa1033920:CDS 45.0%
GAGAATAACGACCTGCTTTG+AGG + chr7_1:69302490-69302509 None:intergenic 45.0%
GGTCGTTATTCTCAACGTGT+TGG - chr7_1:69302497-69302516 Msa1033920:CDS 45.0%
!!! GGGTGGTTAGGTTTTGGAAT+TGG - chr7_1:69302650-69302669 Msa1033920:five_prime_UTR 45.0%
!!! GGTTAGGTTTTGGAATTGGC+TGG - chr7_1:69302654-69302673 Msa1033920:five_prime_UTR 45.0%
! AATTGGCTGGTAATGCTGCA+AGG - chr7_1:69302667-69302686 Msa1033920:five_prime_UTR 45.0%
! ATTGGCTGGTAATGCTGCAA+GGG - chr7_1:69302668-69302687 Msa1033920:five_prime_UTR 45.0%
CCTTCTTTGGCAACAAAGTC+TGG + chr7_1:69302815-69302834 None:intergenic 45.0%
CCAGACTTTGTTGCCAAAGA+AGG - chr7_1:69302812-69302831 Msa1033920:five_prime_UTR 45.0%
GACTTTGTTGCCAAAGAAGG+TGG - chr7_1:69302815-69302834 Msa1033920:five_prime_UTR 45.0%
TTCTTTCCAGCCACCTTCTT+TGG + chr7_1:69302828-69302847 None:intergenic 45.0%
AAAGAAGGTGGCTGGAAAGA+AGG - chr7_1:69302827-69302846 Msa1033920:five_prime_UTR 45.0%
AAGAAGGTGGCTGGAAAGAA+GGG - chr7_1:69302828-69302847 Msa1033920:five_prime_UTR 45.0%
GCTGGAAAGAAGGGAGAAAT+TGG - chr7_1:69302837-69302856 Msa1033920:five_prime_UTR 45.0%
!! TTCGTGAATCCGCTTTTGAG+CGG + chr7_1:69302098-69302117 None:intergenic 45.0%
GCAACAGCAACAACCAAGAA+AGG - chr7_1:69302377-69302396 Msa1033920:CDS 45.0%
ACAGCAACAACCAAGAAAGG+TGG - chr7_1:69302380-69302399 Msa1033920:CDS 45.0%
CAACAACCAAGAAAGGTGGA+AGG - chr7_1:69302384-69302403 Msa1033920:CDS 45.0%
ACAACCAAGAAAGGTGGAAG+GGG - chr7_1:69302386-69302405 Msa1033920:CDS 45.0%
!!! GAAACGGACTTGGTGGTTTT+GGG + chr7_1:69302416-69302435 None:intergenic 45.0%
GGCTTTGCTTGATCTGGAAA+CGG + chr7_1:69302432-69302451 None:intergenic 45.0%
GTTTCCAGATCAAGCAAAGC+CGG - chr7_1:69302431-69302450 Msa1033920:CDS 45.0%
GAGAATAACGACCTGCTTTG+AGG + chr7_1:69302490-69302509 None:intergenic 45.0%
GGTCGTTATTCTCAACGTGT+TGG - chr7_1:69302497-69302516 Msa1033920:CDS 45.0%
!!! GGGTGGTTAGGTTTTGGAAT+TGG - chr7_1:69302650-69302669 Msa1033920:five_prime_UTR 45.0%
!!! GGTTAGGTTTTGGAATTGGC+TGG - chr7_1:69302654-69302673 Msa1033920:five_prime_UTR 45.0%
! AATTGGCTGGTAATGCTGCA+AGG - chr7_1:69302667-69302686 Msa1033920:five_prime_UTR 45.0%
! ATTGGCTGGTAATGCTGCAA+GGG - chr7_1:69302668-69302687 Msa1033920:five_prime_UTR 45.0%
CCTTCTTTGGCAACAAAGTC+TGG + chr7_1:69302815-69302834 None:intergenic 45.0%
CCAGACTTTGTTGCCAAAGA+AGG - chr7_1:69302812-69302831 Msa1033920:five_prime_UTR 45.0%
GACTTTGTTGCCAAAGAAGG+TGG - chr7_1:69302815-69302834 Msa1033920:five_prime_UTR 45.0%
TTCTTTCCAGCCACCTTCTT+TGG + chr7_1:69302828-69302847 None:intergenic 45.0%
AAAGAAGGTGGCTGGAAAGA+AGG - chr7_1:69302827-69302846 Msa1033920:five_prime_UTR 45.0%
AAGAAGGTGGCTGGAAAGAA+GGG - chr7_1:69302828-69302847 Msa1033920:five_prime_UTR 45.0%
GCTGGAAAGAAGGGAGAAAT+TGG - chr7_1:69302837-69302856 Msa1033920:five_prime_UTR 45.0%
!!! CTTTTCAAGTTTCGCTGGCG+TGG + chr7_1:69302145-69302164 None:intergenic 50.0%
CACGCCAGCGAAACTTGAAA+AGG - chr7_1:69302143-69302162 Msa1033920:CDS 50.0%
!!! CACGCCTTTTCAAGTTTCGC+TGG + chr7_1:69302150-69302169 None:intergenic 50.0%
TGGCTTAGAGAGGTTTCACG+CGG + chr7_1:69302234-69302253 None:intergenic 50.0%
TTTGCCCCTTCCACCTTTCT+TGG + chr7_1:69302393-69302412 None:intergenic 50.0%
!!! GGAAACGGACTTGGTGGTTT+TGG + chr7_1:69302417-69302436 None:intergenic 50.0%
! TGATCTGGAAACGGACTTGG+TGG + chr7_1:69302423-69302442 None:intergenic 50.0%
! GCTTGATCTGGAAACGGACT+TGG + chr7_1:69302426-69302445 None:intergenic 50.0%
!! GCAGAGGTATTCAAGAACGG+CGG + chr7_1:69302546-69302565 None:intergenic 50.0%
!! GGCGCAGAGGTATTCAAGAA+CGG + chr7_1:69302549-69302568 None:intergenic 50.0%
GAAAAATTACCTCGGCGCAG+AGG + chr7_1:69302562-69302581 None:intergenic 50.0%
!! ACAGCTAGTTGAAGGTGCCT+TGG + chr7_1:69302717-69302736 None:intergenic 50.0%
CGTTCCTCACAGCTAGTTGA+AGG + chr7_1:69302725-69302744 None:intergenic 50.0%
TTGTTGCCAAAGAAGGTGGC+TGG - chr7_1:69302819-69302838 Msa1033920:five_prime_UTR 50.0%
!!! CTTTTCAAGTTTCGCTGGCG+TGG + chr7_1:69302145-69302164 None:intergenic 50.0%
CACGCCAGCGAAACTTGAAA+AGG - chr7_1:69302143-69302162 Msa1033920:CDS 50.0%
!!! CACGCCTTTTCAAGTTTCGC+TGG + chr7_1:69302150-69302169 None:intergenic 50.0%
TGGCTTAGAGAGGTTTCACG+CGG + chr7_1:69302234-69302253 None:intergenic 50.0%
TTTGCCCCTTCCACCTTTCT+TGG + chr7_1:69302393-69302412 None:intergenic 50.0%
!!! GGAAACGGACTTGGTGGTTT+TGG + chr7_1:69302417-69302436 None:intergenic 50.0%
! TGATCTGGAAACGGACTTGG+TGG + chr7_1:69302423-69302442 None:intergenic 50.0%
! GCTTGATCTGGAAACGGACT+TGG + chr7_1:69302426-69302445 None:intergenic 50.0%
!! GCAGAGGTATTCAAGAACGG+CGG + chr7_1:69302546-69302565 None:intergenic 50.0%
!! GGCGCAGAGGTATTCAAGAA+CGG + chr7_1:69302549-69302568 None:intergenic 50.0%
GAAAAATTACCTCGGCGCAG+AGG + chr7_1:69302562-69302581 None:intergenic 50.0%
!! ACAGCTAGTTGAAGGTGCCT+TGG + chr7_1:69302717-69302736 None:intergenic 50.0%
CGTTCCTCACAGCTAGTTGA+AGG + chr7_1:69302725-69302744 None:intergenic 50.0%
TTGTTGCCAAAGAAGGTGGC+TGG - chr7_1:69302819-69302838 Msa1033920:five_prime_UTR 50.0%
!!! CTTGTTTTGCGGTGCCACGT+TGG - chr7_1:69302204-69302223 Msa1033920:CDS 55.0%
! GAGACCGGCTTTGCTTGATC+TGG + chr7_1:69302438-69302457 None:intergenic 55.0%
! CTTTGAGGAAGCGAGCGATG+CGG + chr7_1:69302475-69302494 None:intergenic 55.0%
ATCGCTCGCTTCCTCAAAGC+AGG - chr7_1:69302476-69302495 Msa1033920:CDS 55.0%
AACGGCGGAGAGGTAAACAG+GGG + chr7_1:69302531-69302550 None:intergenic 55.0%
GAACGGCGGAGAGGTAAACA+GGG + chr7_1:69302532-69302551 None:intergenic 55.0%
AGAACGGCGGAGAGGTAAAC+AGG + chr7_1:69302533-69302552 None:intergenic 55.0%
GGTATTCAAGAACGGCGGAG+AGG + chr7_1:69302541-69302560 None:intergenic 55.0%
TCTTGAATACCTCTGCGCCG+AGG - chr7_1:69302550-69302569 Msa1033920:exon 55.0%
GGCACCTTCAACTAGCTGTG+AGG - chr7_1:69302718-69302737 Msa1033920:five_prime_UTR 55.0%
!!! CTTGTTTTGCGGTGCCACGT+TGG - chr7_1:69302204-69302223 Msa1033920:CDS 55.0%
! GAGACCGGCTTTGCTTGATC+TGG + chr7_1:69302438-69302457 None:intergenic 55.0%
! CTTTGAGGAAGCGAGCGATG+CGG + chr7_1:69302475-69302494 None:intergenic 55.0%
ATCGCTCGCTTCCTCAAAGC+AGG - chr7_1:69302476-69302495 Msa1033920:CDS 55.0%
AACGGCGGAGAGGTAAACAG+GGG + chr7_1:69302531-69302550 None:intergenic 55.0%
GAACGGCGGAGAGGTAAACA+GGG + chr7_1:69302532-69302551 None:intergenic 55.0%
AGAACGGCGGAGAGGTAAAC+AGG + chr7_1:69302533-69302552 None:intergenic 55.0%
GGTATTCAAGAACGGCGGAG+AGG + chr7_1:69302541-69302560 None:intergenic 55.0%
TCTTGAATACCTCTGCGCCG+AGG - chr7_1:69302550-69302569 Msa1033920:exon 55.0%
GGCACCTTCAACTAGCTGTG+AGG - chr7_1:69302718-69302737 Msa1033920:five_prime_UTR 55.0%
TTTCACGCGGATCGCCAACG+TGG + chr7_1:69302221-69302240 None:intergenic 60.0%
TTTCACGCGGATCGCCAACG+TGG + chr7_1:69302221-69302240 None:intergenic 60.0%
GCCAACGGGGAACTGGAGAC+CGG + chr7_1:69302453-69302472 None:intergenic 65.0%
AAGCGAGCGATGCGGCCAAC+GGG + chr7_1:69302467-69302486 None:intergenic 65.0%
GAAGCGAGCGATGCGGCCAA+CGG + chr7_1:69302468-69302487 None:intergenic 65.0%
GCCAACGGGGAACTGGAGAC+CGG + chr7_1:69302453-69302472 None:intergenic 65.0%
AAGCGAGCGATGCGGCCAAC+GGG + chr7_1:69302467-69302486 None:intergenic 65.0%
GAAGCGAGCGATGCGGCCAA+CGG + chr7_1:69302468-69302487 None:intergenic 65.0%
GCCGGTCTCCAGTTCCCCGT+TGG - chr7_1:69302449-69302468 Msa1033920:CDS 70.0%
CGATGCGGCCAACGGGGAAC+TGG + chr7_1:69302460-69302479 None:intergenic 70.0%
AGCGAGCGATGCGGCCAACG+GGG + chr7_1:69302466-69302485 None:intergenic 70.0%
GCCGGTCTCCAGTTCCCCGT+TGG - chr7_1:69302449-69302468 Msa1033920:CDS 70.0%
CGATGCGGCCAACGGGGAAC+TGG + chr7_1:69302460-69302479 None:intergenic 70.0%
AGCGAGCGATGCGGCCAACG+GGG + chr7_1:69302466-69302485 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 69301860 69303063 69301860 ID=Msa1033920;Name=Msa1033920
chr7_1 mRNA 69301860 69303063 69301860 ID=Msa1033920-mRNA-1;Parent=Msa1033920;Name=Msa1033920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=505|1|1|1|1|1|2|182|142
chr7_1 exon 69301860 69302263 69301860 ID=Msa1033920-mRNA-1:exon:16278;Parent=Msa1033920-mRNA-1
chr7_1 exon 69302352 69303063 69302352 ID=Msa1033920-mRNA-1:exon:16277;Parent=Msa1033920-mRNA-1
chr7_1 five_prime_UTR 69302559 69303063 69302559 ID=Msa1033920-mRNA-1:five_prime_utr;Parent=Msa1033920-mRNA-1
chr7_1 CDS 69302352 69302558 69302352 ID=Msa1033920-mRNA-1:cds;Parent=Msa1033920-mRNA-1
chr7_1 CDS 69302042 69302263 69302042 ID=Msa1033920-mRNA-1:cds;Parent=Msa1033920-mRNA-1
chr7_1 three_prime_UTR 69301860 69302041 69301860 ID=Msa1033920-mRNA-1:three_prime_utr;Parent=Msa1033920-mRNA-1
Gene Sequence

>Msa1033920

ATGGCTTCAGATGCAACAGCAACAACCAAGAAAGGTGGAAGGGGCAAACCCAAAACCACCAAGTCCGTTTCCAGATCAAGCAAAGCCGGTCTCCAGTTCCCCGTTGGCCGCATCGCTCGCTTCCTCAAAGCAGGTCGTTATTCTCAACGTGTTGGATCTGGTTCCCCTGTTTACCTCTCCGCCGTTCTTGAATACCTCTGCGCCGAGGTTTTGGAATTGGCTGGTAATGCTGCAAGGGATAACAAGAAGACAAGGATTGTACCAAGGCACCTTCAACTAGCTGTGAGGAACGATGAAGAATTGAGCAAATTGTTGGGACATGTGACTATTGCTAATGGTGGTGTTTTGCCTAACATTCACCAGACTTTGTTGCCAAAGAAGGTGGCTGGAAAGAAGGGAGAAATTGGATCTGTTAGTCAGGAGTTTTAG

Protein sequence

>Msa1033920

MASDATATTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARFLKAGRYSQRVGSGSPVYLSAVLEYLCAEVLELAGNAARDNKKTRIVPRHLQLAVRNDEELSKLLGHVTIANGGVLPNIHQTLLPKKVAGKKGEIGSVSQEF*