AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0800660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800660 MtrunA17_Chr5g0406641 95.255 843 31 2 1 842 1 835 0.0 1648
Msa0800660 MtrunA17_Chr6g0484831 94.781 843 36 1 1 843 1 835 0.0 1619
Msa0800660 MtrunA17_Chr7g0215341 89.324 843 74 3 1 843 1 827 0.0 1506
Msa0800660 MtrunA17_Chr4g0007641 79.391 854 154 6 1 843 1 843 0.0 1375
Msa0800660 MtrunA17_Chr6g0464681 68.301 877 193 9 1 843 1 826 0.0 1176
Msa0800660 MtrunA17_Chr6g0486931 52.732 842 363 11 9 827 88 917 0.0 875
Msa0800660 MtrunA17_Chr8g0369361 50.128 782 359 10 60 826 9 774 0.0 781
Msa0800660 MtrunA17_Chr5g0427891 57.265 351 141 2 477 827 1 342 6.05e-136 408
Msa0800660 MtrunA17_Chr2g0302601 33.421 380 209 8 437 810 1215 1556 2.54e-56 211
Msa0800660 MtrunA17_Chr6g0477371 33.421 380 209 8 437 810 1206 1547 5.79e-55 207
Msa0800660 MtrunA17_Chr4g0017221 33.158 380 210 8 437 810 1190 1531 3.32e-54 204
Msa0800660 MtrunA17_Chr8g0364091 45.652 184 88 6 121 293 30 212 6.16e-40 147
Msa0800660 MtrunA17_Chr8g0364111 74.242 66 17 0 761 826 3 68 1.15e-27 107
Msa0800660 MtrunA17_Chr5g0427871 47.115 104 46 2 60 154 38 141 6.59e-23 95.5
Msa0800660 MtrunA17_Chr5g0427881 60.000 65 26 0 388 452 39 103 3.90e-22 92.0
Msa0800660 MtrunA17_Chr3g0087051 36.196 163 84 5 654 810 2 150 2.18e-20 89.0
Msa0800660 MtrunA17_Chr2g0306841 35.417 96 54 2 552 647 15 102 1.04e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800660 AT1G69770.1 52.302 847 357 13 1 823 1 824 0.0 831
Msa0800660 AT1G80740.1 50.552 815 345 10 43 830 2 785 0.0 811
Msa0800660 AT4G19020.1 51.026 780 352 7 58 826 521 1281 0.0 802
Msa0800660 AT4G19020.2 51.026 780 352 7 58 826 473 1233 0.0 801
Msa0800660 AT4G14140.3 35.263 380 196 10 433 803 1164 1502 7.05e-57 213
Msa0800660 AT4G14140.1 35.263 380 196 10 433 803 1164 1502 7.05e-57 213
Msa0800660 AT4G14140.2 35.263 380 196 10 433 803 1190 1528 8.73e-57 213
Msa0800660 AT4G08990.1 35.279 377 200 10 433 803 1157 1495 1.98e-55 208
Msa0800660 AT4G13610.1 32.817 387 200 10 433 811 1066 1400 5.58e-53 201
Msa0800660 AT5G49160.2 33.075 387 211 10 433 811 1091 1437 9.88e-52 197
Msa0800660 AT5G49160.1 33.075 387 211 10 433 811 1179 1525 1.20e-51 197

Find 205 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTTGCTGGTGGGTTTC+TGG 0.008640 5_3:-14162272 Msa0800660:CDS
TGCTTTGGAGCGTCTATTTC+TGG 0.092776 5_3:-14163478 Msa0800660:CDS
ACTTTACTGGATTTGTATTC+TGG 0.102309 5_3:-14163526 Msa0800660:CDS
CCAAAACATACGTGTGTTTC+TGG 0.107116 5_3:+14163283 None:intergenic
TTCAACCCGCTCAGTGTAAA+TGG 0.259279 5_3:+14165677 None:intergenic
GAAGCTTGAGTGGACTTTAC+TGG 0.259994 5_3:-14163539 Msa0800660:CDS
AGATATGATACCTTCTTCTT+TGG 0.269464 5_3:+14161093 None:intergenic
TAGACAACTTGGGTACTTAA+AGG 0.288833 5_3:+14159600 None:intergenic
CATTCGAGCTTGATAATTCA+TGG 0.289914 5_3:+14162222 None:intergenic
ATAGAAAACTCACTCGTTCT+TGG 0.312461 5_3:+14165232 None:intergenic
AGGAACGACGTCGTCTTGTT+TGG 0.324105 5_3:+14165439 None:intergenic
TGAAGTCTCGCTTTCTATTA+TGG 0.324543 5_3:+14163648 None:intergenic
AAATTTGCTGGTGGGTTTCT+GGG 0.327523 5_3:-14162271 Msa0800660:CDS
CCAGACTGCTATAAGCTTTG+TGG 0.329709 5_3:-14160286 Msa0800660:CDS
TTCAATATTTACAGTGTCTT+CGG 0.334695 5_3:+14164160 None:intergenic
CATACGGCCTTCCTCAATTT+CGG 0.344457 5_3:-14162180 Msa0800660:CDS
ATCCTTTAGATTGTTTAGTT+AGG 0.347736 5_3:-14163994 Msa0800660:CDS
CTAAGAACTCTGTCTTGTTC+TGG 0.348365 5_3:+14160340 None:intergenic
CCACCTTGTCAAGGTGTTAG+TGG 0.350266 5_3:-14162424 Msa0800660:CDS
ATGTCCACTGGCCTTTGCTT+TGG 0.354478 5_3:-14163493 Msa0800660:CDS
ACAAATGTCATTGCATAATC+TGG 0.361080 5_3:+14160810 None:intergenic
CTTTACTGGATTTGTATTCT+GGG 0.362248 5_3:-14163525 Msa0800660:CDS
TTAGTGGTTTCAATCGCTTC+AGG 0.364770 5_3:-14162408 Msa0800660:CDS
ATCCTCAAGGTTTAATGCCT+TGG 0.368420 5_3:+14161791 None:intergenic
GTTCCTGTGGCCCTTGCCCT+TGG 0.369274 5_3:-14159682 Msa0800660:CDS
GGGCTCCCATGTATCATAAC+TGG 0.370498 5_3:+14162803 None:intergenic
ACATTCATTCATACAATTCC+AGG 0.376011 5_3:+14159358 None:intergenic
CACTGAGCGGGTTGAAGTGC+CGG 0.383051 5_3:-14165670 Msa0800660:five_prime_UTR
TTCGCTTTCTTTCTTCTAGA+AGG 0.383626 5_3:+14165344 None:intergenic
TGAGCTTCATCGGCCGGAAT+AGG 0.388189 5_3:+14165278 None:intergenic
TTCCTAACTAAACAATCTAA+AGG 0.391710 5_3:+14163992 None:intergenic
TCTTCTTCAACGGGATTAAC+CGG 0.395326 5_3:+14165383 None:intergenic
AACACATACCTCTGTTTGAC+AGG 0.396020 5_3:+14160262 None:intergenic
GAAAGAGTGCATCTAAAATC+TGG 0.397497 5_3:-14160925 Msa0800660:CDS
TTCCATCAACCTTAGCTTCA+CGG 0.398033 5_3:+14165087 None:intergenic
AGACAACTTGGGTACTTAAA+GGG 0.412259 5_3:+14159601 None:intergenic
TCTAAAATCTGGAAAGCCTT+TGG 0.417831 5_3:-14160914 Msa0800660:intron
TCAACACTTTCAAGTGAATC+CGG 0.418845 5_3:-14163628 Msa0800660:CDS
GTAAAATATTGTTCTTCCTC+AGG 0.419858 5_3:+14164203 None:intergenic
AAGGGCCGAGCCTCATAATC+AGG 0.420289 5_3:-14160630 Msa0800660:intron
TTAGATTCTTTAATTTGAGT+TGG 0.421419 5_3:+14163562 None:intergenic
CATCAACTACATCTAAAGAA+TGG 0.427040 5_3:+14159575 None:intergenic
ATCCGACTCTGAGGTATTTG+AGG 0.427400 5_3:-14163000 Msa0800660:CDS
TACCGTGAAGCTAAGGTTGA+TGG 0.427590 5_3:-14165089 Msa0800660:CDS
CTTGCCCTTGGATACACATT+CGG 0.430430 5_3:-14159670 Msa0800660:CDS
TTCTTATCTTTCAGGTGCAT+TGG 0.437517 5_3:-14162839 Msa0800660:intron
TATCTTTCAGGTGCATTGGA+AGG 0.438453 5_3:-14162835 Msa0800660:intron
ATGTTAGCGAAAGTTAAATA+TGG 0.438654 5_3:+14163785 None:intergenic
GAAACCAGTTCTTCTTCAAC+GGG 0.439261 5_3:+14165374 None:intergenic
GCTGAACACAACAGGCCATT+TGG 0.441659 5_3:-14160692 Msa0800660:intron
TAATCCCGTTGAAGAAGAAC+TGG 0.445031 5_3:-14165378 Msa0800660:CDS
ATGAAAATGAAATCAAGATA+AGG 0.448948 5_3:+14159504 None:intergenic
TATCCAAGGGCAAGGGCCAC+AGG 0.450914 5_3:+14159679 None:intergenic
AAAGAATGGGCTAGACAACT+TGG 0.454064 5_3:+14159589 None:intergenic
ATCAACTACATCTAAAGAAT+GGG 0.455075 5_3:+14159576 None:intergenic
TGAAAATGAAATCAAGATAA+GGG 0.455636 5_3:+14159505 None:intergenic
TTTCTGGGGCGTTATGCTGT+GGG 0.456388 5_3:-14162256 Msa0800660:CDS
CTTCGTCGGAGAACCTATTC+CGG 0.456622 5_3:-14165291 Msa0800660:CDS
CTGGATTTGTATTCTGGGTG+TGG 0.458568 5_3:-14163520 Msa0800660:CDS
GAGAAGAGGAAAAGCGAAGC+GGG 0.458702 5_3:+14165600 None:intergenic
TAAAGAAAACAAGGTGGAAT+GGG 0.464628 5_3:-14160959 Msa0800660:CDS
ACAGATTCTGATTTGAATGC+TGG 0.467576 5_3:-14163068 Msa0800660:CDS
CCGATGAAGCTCAAAAGAAA+TGG 0.467775 5_3:-14165268 Msa0800660:CDS
ACAGGCCATTTGGTCGACTT+TGG 0.470283 5_3:-14160682 Msa0800660:intron
AATGTGTGTGCAGGTGATTA+AGG 0.470442 5_3:-14164074 Msa0800660:intron
CGAATGGGAATGATGGCTGC+AGG 0.476134 5_3:-14162205 Msa0800660:CDS
TTCGGCTCTGTAAAACCATT+GGG 0.476357 5_3:+14164178 None:intergenic
CAAACAATAACCTGATTATG+AGG 0.477324 5_3:+14160620 None:intergenic
CAAAACATACGTGTGTTTCT+GGG 0.479283 5_3:+14163284 None:intergenic
CCACAAAGCTTATAGCAGTC+TGG 0.481850 5_3:+14160286 None:intergenic
ACGATTCCAGTTATGATACA+TGG 0.482110 5_3:-14162809 Msa0800660:CDS
CGAGAGAATGCAAGGCTACA+AGG 0.483765 5_3:-14160313 Msa0800660:CDS
CTTATCAGTTGCACGGACAT+TGG 0.484986 5_3:+14163603 None:intergenic
GTTTCTGGGGCGTTATGCTG+TGG 0.485630 5_3:-14162257 Msa0800660:CDS
CTCACTCGTTCTTGGTGTAT+CGG 0.487063 5_3:+14165240 None:intergenic
TCCGTGCAACTGATAAGAAA+GGG 0.491671 5_3:-14163597 Msa0800660:CDS
GTCTCGCTTTCTATTATGGC+AGG 0.492921 5_3:+14163652 None:intergenic
TTGCCACATTCCAAAGAAGA+AGG 0.494632 5_3:-14161103 Msa0800660:intron
TTAGATGTAGTTGATGATGA+TGG 0.499460 5_3:-14159568 Msa0800660:CDS
CTTCGGCTCTGTAAAACCAT+TGG 0.499873 5_3:+14164177 None:intergenic
GCCATTTGGTCGACTTTGGT+GGG 0.501789 5_3:-14160678 Msa0800660:CDS
AGCAATGATGAAAGGAGCTA+TGG 0.503765 5_3:-14161632 Msa0800660:CDS
ATGAATTATCAAGCTCGAAT+GGG 0.503860 5_3:-14162220 Msa0800660:CDS
CTTACTTTAAAATAAAGTCC+TGG 0.505726 5_3:+14162927 None:intergenic
GGGTGTGGAGCTATGTCCAC+TGG 0.507514 5_3:-14163505 Msa0800660:CDS
AAAGAAAGCGAAGCAATCTT+CGG 0.511714 5_3:-14165333 Msa0800660:CDS
TTATGCTGTGGGCCGTCTAG+TGG 0.511914 5_3:-14162245 Msa0800660:CDS
CATGAATTATCAAGCTCGAA+TGG 0.511989 5_3:-14162221 Msa0800660:CDS
GTCCGTGCAACTGATAAGAA+AGG 0.513074 5_3:-14163598 Msa0800660:CDS
CCCCTTTCTTATCAGTTGCA+CGG 0.513311 5_3:+14163596 None:intergenic
CACTAATGAAAATTGTCAGC+TGG 0.514015 5_3:-14161814 Msa0800660:CDS
TTAAAGAAAACAAGGTGGAA+TGG 0.514535 5_3:-14160960 Msa0800660:CDS
CACCACAAATAAAATCAGCT+TGG 0.514779 5_3:+14162449 None:intergenic
ACATTCGGTTTAGCAATTCA+AGG 0.515197 5_3:-14159655 Msa0800660:CDS
GTTCTTACTTCAAACTCAGT+GGG 0.517126 5_3:+14161957 None:intergenic
GGCCATTTGGTCGACTTTGG+TGG 0.517220 5_3:-14160679 Msa0800660:CDS
ATCTTTCAGGTGCATTGGAA+GGG 0.520919 5_3:-14162834 Msa0800660:intron
ATGATGGCTGCAGGGTCATA+CGG 0.524006 5_3:-14162196 Msa0800660:CDS
AAAACACGCATCCGAAATTG+AGG 0.524141 5_3:+14162169 None:intergenic
TCATCGGTATTTAATTTCAA+AGG 0.524186 5_3:+14161138 None:intergenic
TTCTCCATCAGAACATACTT+AGG 0.525692 5_3:+14162310 None:intergenic
TGTGACGAGTTTGTACTGAA+TGG 0.527233 5_3:-14163101 Msa0800660:CDS
TCCCACCAAAGTCGACCAAA+TGG 0.528934 5_3:+14160677 None:intergenic
TAATGCAGGTACATGCAAGT+TGG 0.531949 5_3:-14159718 Msa0800660:intron
GATCATTAATTGCATCCTCA+AGG 0.533889 5_3:+14161778 None:intergenic
GAACTCTGTCTTGTTCTGGA+TGG 0.534548 5_3:+14160344 None:intergenic
TTCTGGCATTAAGCTTGTGA+CGG 0.535368 5_3:-14163461 Msa0800660:intron
TGAAAATTGTCAGCTGGCCA+AGG 0.535950 5_3:-14161808 Msa0800660:CDS
ATACCTTCTTCTTTGGAATG+TGG 0.536325 5_3:+14161100 None:intergenic
GAGTGAGGATGAAAGTTTGA+AGG 0.536508 5_3:-14165123 Msa0800660:CDS
TTTAAGTCTCCTAAAAGAGT+GGG 0.536611 5_3:-14163132 Msa0800660:CDS
AATTTCCATTTACACTGAGC+GGG 0.537479 5_3:-14165682 None:intergenic
GAAGCCTAAGTATGTTCTGA+TGG 0.538220 5_3:-14162314 Msa0800660:CDS
GGCAAACTTCAGGGACCTCA+AGG 0.539453 5_3:-14160992 Msa0800660:CDS
CTCGATACAACCTCATGAGT+TGG 0.540046 5_3:+14161990 None:intergenic
GTTTCACTACCGTGAAGCTA+AGG 0.540874 5_3:-14165096 Msa0800660:CDS
AGAAACCAGTTCTTCTTCAA+CGG 0.541839 5_3:+14165373 None:intergenic
GGATTACATCGCTACGATTG+TGG 0.542274 5_3:-14164240 Msa0800660:CDS
TATATCAGATTAAAGAGAAG+TGG 0.544554 5_3:-14161581 Msa0800660:intron
TGACTTGAAGAAATGGGCTG+TGG 0.544856 5_3:-14163347 Msa0800660:intron
ATGCAATGACATTTGTTCGT+GGG 0.548444 5_3:-14160803 Msa0800660:CDS
AGTTGCACGGACATTGGACC+CGG 0.551087 5_3:+14163609 None:intergenic
AACATACCTCAAGCCCTCGA+TGG 0.552579 5_3:+14162782 None:intergenic
TCAAGCTCGAATGGGAATGA+TGG 0.553083 5_3:-14162212 Msa0800660:CDS
AGATGCACTCTTTCAACAGA+GGG 0.553687 5_3:+14160934 None:intergenic
CTAAACCGAATGTGTATCCA+AGG 0.555284 5_3:+14159665 None:intergenic
AGACTACTCTCCATCTGCTA+TGG 0.555425 5_3:-14162972 Msa0800660:CDS
TTGTGTCTACTGTTGTAACA+AGG 0.557248 5_3:-14160649 Msa0800660:CDS
GCAATTCAAGGACTCTCTGA+TGG 0.560406 5_3:-14159643 Msa0800660:CDS
GGGAGCCCATCGAGGGCTTG+AGG 0.565566 5_3:-14162788 Msa0800660:intron
CGAATGTGTATCCAAGGGCA+AGG 0.566219 5_3:+14159671 None:intergenic
ACATACCTCAAGCCCTCGAT+GGG 0.566713 5_3:+14162783 None:intergenic
TCGTTCCTCGTTCTTCTCAA+CGG 0.569879 5_3:-14165424 Msa0800660:CDS
ACTGAGCGGGTTGAAGTGCC+GGG 0.573761 5_3:-14165669 Msa0800660:five_prime_UTR
TGTGGTGGGCCACCTTGTCA+AGG 0.574035 5_3:-14162433 Msa0800660:CDS
AAGAATCTAAGAAGCTTGAG+TGG 0.574067 5_3:-14163549 Msa0800660:CDS
GTGGTGAGACTTACAGGAAG+AGG 0.574419 5_3:+14162576 None:intergenic
AATTTGCTGGTGGGTTTCTG+GGG 0.576721 5_3:-14162270 Msa0800660:CDS
GTGGTATGCTGTATGATCAC+AGG 0.577358 5_3:-14161161 Msa0800660:CDS
CATTCATTCATACAATTCCA+GGG 0.577583 5_3:+14159359 None:intergenic
CATAAATACATACTTAGAAG+AGG 0.580332 5_3:+14160779 None:intergenic
CAACACTTTCAAGTGAATCC+GGG 0.580699 5_3:-14163627 Msa0800660:CDS
ATTGGGATCACCATAGCAGA+TGG 0.582193 5_3:+14162962 None:intergenic
ATGATGATAGCAATGATGAA+AGG 0.582237 5_3:-14161640 Msa0800660:CDS
GGAAAAGACATGGATTAATG+AGG 0.584597 5_3:+14159529 None:intergenic
TTAGTATTCGAGAGAATGCA+AGG 0.585626 5_3:-14160321 Msa0800660:CDS
TCCGACGATGCATTCTTCGT+CGG 0.587008 5_3:-14165305 Msa0800660:CDS
CGCTCCAAAGCAAAGGCCAG+TGG 0.588179 5_3:+14163489 None:intergenic
GCAATGATGAAAGGAGCTAT+GGG 0.589376 5_3:-14161631 Msa0800660:CDS
GACAACTTGGGTACTTAAAG+GGG 0.589664 5_3:+14159602 None:intergenic
CTTTAACAAGCACTCCCTTG+AGG 0.595401 5_3:+14160977 None:intergenic
ATATATAAATGAAAGAGAAG+AGG 0.596509 5_3:+14165586 None:intergenic
GCAAACTCTCTCATAGTCAT+CGG 0.597622 5_3:+14161122 None:intergenic
CGATTCCAGTTATGATACAT+GGG 0.597731 5_3:-14162808 Msa0800660:CDS
AAATAGACGCTCCAAAGCAA+AGG 0.600764 5_3:+14163482 None:intergenic
AAGCAATGGCCTTACTTCAG+TGG 0.602447 5_3:+14162129 None:intergenic
ACTTTCGCTAACATTGACAA+TGG 0.603027 5_3:-14163776 Msa0800660:intron
AAATGCAGTTGCTGTTCCTG+TGG 0.603453 5_3:-14159695 Msa0800660:CDS
AACCTCAAATACCTCAGAGT+CGG 0.604058 5_3:+14162998 None:intergenic
GGAGGATAATGCTTATGTCA+AGG 0.604274 5_3:-14165051 Msa0800660:intron
AGAAGCTGATGATGAAGCGA+TGG 0.605443 5_3:-14163030 Msa0800660:CDS
CAATTTCCATTTACACTGAG+CGG 0.606867 5_3:-14165683 None:intergenic
AGATAAGGGTGGAAAAGACA+TGG 0.607414 5_3:+14159519 None:intergenic
TGCAGGTGATTAAGGACCAT+GGG 0.609611 5_3:-14164066 Msa0800660:intron
GATAATTCATGGCCACTAGA+CGG 0.613254 5_3:+14162233 None:intergenic
GATACATGGGAGCCCATCGA+GGG 0.613692 5_3:-14162795 Msa0800660:CDS
AATAACCTGATTATGAGGCT+CGG 0.618623 5_3:+14160625 None:intergenic
TATGCAATGACATTTGTTCG+TGG 0.619188 5_3:-14160804 Msa0800660:CDS
TGATCATACAGCATACCACT+TGG 0.622966 5_3:+14161165 None:intergenic
AAATGAAATCAAGATAAGGG+TGG 0.624158 5_3:+14159508 None:intergenic
GAATGCTGGCAAAGAAGCTG+AGG 0.624902 5_3:-14163054 Msa0800660:CDS
CACGCATCCGAAATTGAGGA+AGG 0.628287 5_3:+14162173 None:intergenic
AAGAATGGGCTAGACAACTT+GGG 0.629534 5_3:+14159590 None:intergenic
TCCGACGAAGAATGCATCGT+CGG 0.629828 5_3:+14165304 None:intergenic
AGTTCTTACTTCAAACTCAG+TGG 0.631096 5_3:+14161956 None:intergenic
TGAGTTGGTAACGGATATGA+CGG 0.631314 5_3:+14162005 None:intergenic
TAGATGCACTCTTTCAACAG+AGG 0.633772 5_3:+14160933 None:intergenic
GAATGGGAATGATGGCTGCA+GGG 0.641368 5_3:-14162204 Msa0800660:CDS
GGATAATTCATCCGACTCTG+AGG 0.644647 5_3:-14163009 Msa0800660:CDS
ACAACCTCATGAGTTGGTAA+CGG 0.650609 5_3:+14161996 None:intergenic
GCAAACTTCAGGGACCTCAA+GGG 0.650920 5_3:-14160991 Msa0800660:CDS
GAATGTGTATCCAAGGGCAA+GGG 0.651696 5_3:+14159672 None:intergenic
GGCCAAGGCATTAAACCTTG+AGG 0.652857 5_3:-14161793 Msa0800660:CDS
TGTGTCTACTGTTGTAACAA+GGG 0.655093 5_3:-14160648 Msa0800660:CDS
TTAAAGGGGAGAGTTGTCAA+AGG 0.658649 5_3:+14159616 None:intergenic
GACTCTCAAAGTGCACCAAG+TGG 0.659799 5_3:-14161180 Msa0800660:CDS
TTCTTACTTCAAACTCAGTG+GGG 0.660921 5_3:+14161958 None:intergenic
CCGTGCAACTGATAAGAAAG+GGG 0.670667 5_3:-14163596 Msa0800660:CDS
TCGTTCTTGGTGTATCGGTG+AGG 0.672316 5_3:+14165245 None:intergenic
GTGCAGGTGATTAAGGACCA+TGG 0.674534 5_3:-14164067 Msa0800660:intron
ATATCAAAATAGAAGTCACA+AGG 0.681018 5_3:+14163821 None:intergenic
AGAGAAGAGGAAAAGCGAAG+CGG 0.681303 5_3:+14165599 None:intergenic
GATGCACTCTTTCAACAGAG+GGG 0.682334 5_3:+14160935 None:intergenic
ATATCCGTTACCAACTCATG+AGG 0.683219 5_3:-14162000 Msa0800660:CDS
CCACTAACACCTTGACAAGG+TGG 0.683957 5_3:+14162424 None:intergenic
TAAACCGAATGTGTATCCAA+GGG 0.685117 5_3:+14159666 None:intergenic
TGATACATGGGAGCCCATCG+AGG 0.686118 5_3:-14162796 Msa0800660:CDS
TTTGTGGCCCTGTCAAACAG+AGG 0.688111 5_3:-14160270 Msa0800660:intron
ACACATACCTCTGTTTGACA+GGG 0.690367 5_3:+14160263 None:intergenic
AGTGCTTGTTAAAGAAAACA+AGG 0.696627 5_3:-14160968 Msa0800660:CDS
TTCTTCCGTTGAGAAGAACG+AGG 0.699637 5_3:+14165419 None:intergenic
TCAAAATAGAAGTCACAAGG+AGG 0.707483 5_3:+14163824 None:intergenic
GGAGATGTTTGAAACTCCTG+AGG 0.713389 5_3:-14164219 Msa0800660:CDS
GCTTGTTAAAGAAAACAAGG+TGG 0.727180 5_3:-14160965 Msa0800660:CDS
AAACCACTAACACCTTGACA+AGG 0.729461 5_3:+14162421 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTATATA+TGG - chr5_3:14160086-14160105 Msa0800660:intron 0.0%
!!! ACTATCTAAATATTTTTAAA+TGG - chr5_3:14162798-14162817 Msa0800660:CDS 10.0%
!! TTTATTTGAACAAAAAAATA+TGG - chr5_3:14165601-14165620 Msa0800660:five_prime_UTR 10.0%
!!! TTATTTTATATATGGTTCAT+TGG - chr5_3:14160094-14160113 Msa0800660:intron 15.0%
!! TTTATTTCATGTTGAAAATT+TGG - chr5_3:14160427-14160446 Msa0800660:intron 15.0%
!! TCAACATTAAATCAAATAAA+AGG + chr5_3:14160462-14160481 None:intergenic 15.0%
!!! TTTTACTGATTTTATAATCT+TGG - chr5_3:14161489-14161508 Msa0800660:intron 15.0%
!! TAATAATTAACTACACAATA+AGG + chr5_3:14161973-14161992 None:intergenic 15.0%
!!! ATGAAAGATTTTGTTATAAA+TGG - chr5_3:14162248-14162267 Msa0800660:CDS 15.0%
!!! TTTTGTTATAAATGGATATA+AGG - chr5_3:14162256-14162275 Msa0800660:CDS 15.0%
!!! TCTAAATATTTTTAAATGGA+AGG - chr5_3:14162802-14162821 Msa0800660:CDS 15.0%
!!! TATTTATGTACATCTATTTT+AGG - chr5_3:14164102-14164121 Msa0800660:intron 15.0%
!!! ATTTTATCATATGAAGTATT+TGG - chr5_3:14164791-14164810 Msa0800660:intron 15.0%
!! ATGATTTAATATTCACATTT+CGG - chr5_3:14165557-14165576 Msa0800660:five_prime_UTR 15.0%
!! ATATATAAATGAAAGAGAAG+AGG + chr5_3:14159283-14159302 None:intergenic 20.0%
!!! AAGTGCTTTTTTTTTTTGTT+AGG + chr5_3:14159358-14159377 None:intergenic 20.0%
!!! TGTTGAAAATTTGATGTTTT+AGG - chr5_3:14159887-14159906 Msa0800660:intron 20.0%
!!! GTTGAAAATTTGATGTTTTA+GGG - chr5_3:14159888-14159907 Msa0800660:intron 20.0%
!!! TTTGATTCATGTTGAAATTT+TGG - chr5_3:14160192-14160211 Msa0800660:intron 20.0%
!! TCAACATTAAATCAAAAGAA+AGG + chr5_3:14160227-14160246 None:intergenic 20.0%
!!! AATGTTGAAAATTGTGTTTT+TGG - chr5_3:14160239-14160258 Msa0800660:intron 20.0%
!!! TTGATTTCATGTTGATAATT+TGG - chr5_3:14160306-14160325 Msa0800660:CDS 20.0%
!! TCAACATGATATCAAATAAA+AGG + chr5_3:14160341-14160360 None:intergenic 20.0%
!!! AATGTTGAAAATTGTGTTTT+AGG - chr5_3:14160239-14160258 Msa0800660:intron 20.0%
!!! AATTTTAACTCTTGTGTTTT+GGG - chr5_3:14160727-14160746 Msa0800660:intron 20.0%
!! TCAACATAAAAAATTTGGTA+AGG + chr5_3:14161167-14161186 None:intergenic 20.0%
!! CACAATCAACATAAAAAATT+TGG + chr5_3:14161172-14161191 None:intergenic 20.0%
!!! CAAATTTTTTATGTTGATTG+TGG - chr5_3:14161170-14161189 Msa0800660:CDS 20.0%
!!! TTAGATTCTTTAATTTGAGT+TGG + chr5_3:14161307-14161326 None:intergenic 20.0%
!!! TAATTTGCATAATGTTTCTT+TGG - chr5_3:14161437-14161456 Msa0800660:intron 20.0%
!! CTATAAATTTCTTATCTTTC+AGG - chr5_3:14162019-14162038 Msa0800660:intron 20.0%
!!! ATAGTCAATATCTTGATAAT+TGG + chr5_3:14162110-14162129 None:intergenic 20.0%
!! AAACTATATTCACAATGTAT+TGG + chr5_3:14163140-14163159 None:intergenic 20.0%
!!! TATACAACATTGTTTTAAAG+AGG + chr5_3:14164324-14164343 None:intergenic 20.0%
!!! TCTTATCTTTTTGTTGAAAT+TGG - chr5_3:14164637-14164656 Msa0800660:intron 20.0%
!!! TTTTTGTTGAAATTGGTAAA+TGG - chr5_3:14164644-14164663 Msa0800660:intron 20.0%
!! GTGCAATTTAGTAATAAATA+TGG + chr5_3:14164921-14164940 None:intergenic 20.0%
!! TTAGGTGTAATATTTCTTAT+TGG - chr5_3:14164981-14165000 Msa0800660:intron 20.0%
!! TGAAAATGAAATCAAGATAA+GGG + chr5_3:14165364-14165383 None:intergenic 20.0%
!! ATGAAAATGAAATCAAGATA+AGG + chr5_3:14165365-14165384 None:intergenic 20.0%
!! AACAAAAAAATATGGCAAAT+GGG - chr5_3:14165609-14165628 Msa0800660:five_prime_UTR 20.0%
!! TGATGGAATTTTATATAAGC+TGG - chr5_3:14159794-14159813 Msa0800660:intron 25.0%
!! TTATTTCTTTGATTGCATGT+TGG - chr5_3:14159912-14159931 Msa0800660:intron 25.0%
! TATGATTTCGTGTTGAAAAT+TGG - chr5_3:14160001-14160020 Msa0800660:intron 25.0%
! ATGATTTCGTGTTGAAAATT+GGG - chr5_3:14160002-14160021 Msa0800660:intron 25.0%
!! ATGTTGAAAACTGTGTTTTA+TGG - chr5_3:14160127-14160146 Msa0800660:intron 25.0%
!!! CATGTTGAAATTTTGGTTTT+AGG - chr5_3:14160199-14160218 Msa0800660:intron 25.0%
! TTGGATTCATTTCTTTGATT+TGG - chr5_3:14160258-14160277 Msa0800660:intron 25.0%
!!! CATGTTGATAATTTGGTTTT+AGG - chr5_3:14160313-14160332 Msa0800660:CDS 25.0%
! TAGGATTCATTTCTTTGATT+TGG - chr5_3:14160372-14160391 Msa0800660:intron 25.0%
!!! CATGTTGAAAATTTGGTTTT+AGG - chr5_3:14160434-14160453 Msa0800660:intron 25.0%
! TTCAATATTTACAGTGTCTT+CGG + chr5_3:14160709-14160728 None:intergenic 25.0%
!!! GAATTTTAACTCTTGTGTTT+TGG - chr5_3:14160726-14160745 Msa0800660:intron 25.0%
!!! TTTAGGGTTATTGTTGATTT+TGG - chr5_3:14160762-14160781 Msa0800660:intron 25.0%
! ATCCTTTAGATTGTTTAGTT+AGG - chr5_3:14160872-14160891 Msa0800660:intron 25.0%
! TTCCTAACTAAACAATCTAA+AGG + chr5_3:14160877-14160896 None:intergenic 25.0%
!!! ATGTTGATTTTGTTTACTAC+AGG - chr5_3:14160999-14161018 Msa0800660:intron 25.0%
! ATATCAAAATAGAAGTCACA+AGG + chr5_3:14161048-14161067 None:intergenic 25.0%
! ATGTTAGCGAAAGTTAAATA+TGG + chr5_3:14161084-14161103 None:intergenic 25.0%
!!! TTGTTTTTGACTTGAAGAAA+TGG - chr5_3:14161512-14161531 Msa0800660:intron 25.0%
!!! TGTTTTTGACTTGAAGAAAT+GGG - chr5_3:14161513-14161532 Msa0800660:intron 25.0%
!!! CTTACTTTAAAATAAAGTCC+TGG + chr5_3:14161942-14161961 None:intergenic 25.0%
! AGTTAATTATTATCAGCTAG+TGG - chr5_3:14161981-14162000 Msa0800660:CDS 25.0%
! TCTTAAGTAAAGCAAAGTTA+GGG + chr5_3:14162138-14162157 None:intergenic 25.0%
! ATCTTAAGTAAAGCAAAGTT+AGG + chr5_3:14162139-14162158 None:intergenic 25.0%
!!! TTATTTTTTTCATCCTCCAA+CGG + chr5_3:14162496-14162515 None:intergenic 25.0%
! AAAACTAGTACTATAAGCAA+TGG + chr5_3:14162754-14162773 None:intergenic 25.0%
!!! TATTTTTGAAAATCAGTACG+AGG + chr5_3:14163267-14163286 None:intergenic 25.0%
! TATATCAGATTAAAGAGAAG+TGG - chr5_3:14163285-14163304 Msa0800660:intron 25.0%
! ATTTATCAGCTAAAATGTAC+TGG - chr5_3:14163479-14163498 Msa0800660:CDS 25.0%
! TATAACTAGAATTGTGTATG+TGG - chr5_3:14163545-14163564 Msa0800660:CDS 25.0%
!! TCATCGGTATTTAATTTCAA+AGG + chr5_3:14163731-14163750 None:intergenic 25.0%
! CATAAATACATACTTAGAAG+AGG + chr5_3:14164090-14164109 None:intergenic 25.0%
!!! TTTTAAAGAGGTTTTGCAAT+GGG + chr5_3:14164312-14164331 None:intergenic 25.0%
! CATAGATATGTGAAAATTTG+TGG + chr5_3:14164752-14164771 None:intergenic 25.0%
! ATAATAGCTTAATCAGTTGT+TGG + chr5_3:14164889-14164908 None:intergenic 25.0%
!! TTCTTATTGGTCTAACAATA+TGG - chr5_3:14164994-14165013 Msa0800660:intron 25.0%
! AATAGTTACATCTTTAATGC+AGG - chr5_3:14165134-14165153 Msa0800660:intron 25.0%
! ATCAACTACATCTAAAGAAT+GGG + chr5_3:14165293-14165312 None:intergenic 25.0%
! NNNNNNAGCCAAGAATATTC+AGG - chr5_3:14165484-14165503 Msa0800660:exon 25.0%
! GAACAAAAAAATATGGCAAA+TGG - chr5_3:14165608-14165627 Msa0800660:five_prime_UTR 25.0%
!! TTTCACTACTTTTCATTTCC+CGG + chr5_3:14159218-14159237 None:intergenic 30.0%
GAAGAAATCCAAAAAATCTC+CGG - chr5_3:14159464-14159483 Msa0800660:intron 30.0%
! TGGAATTTTATATAAGCTGG+AGG - chr5_3:14159797-14159816 Msa0800660:intron 30.0%
TATGGTTCGTTTCTTTGATT+TGG - chr5_3:14160145-14160164 Msa0800660:intron 30.0%
!! TCATTTCTTTGATTTGGTGT+TGG - chr5_3:14160264-14160283 Msa0800660:intron 30.0%
! CATGTTGAAAACTGTGTTTT+AGG - chr5_3:14160126-14160145 Msa0800660:intron 30.0%
!! GATTCATTTCTTTGATTTGG+TGG - chr5_3:14160261-14160280 Msa0800660:intron 30.0%
! TTGTTTGCTGAATGTTGTTT+AGG - chr5_3:14160587-14160606 Msa0800660:intron 30.0%
! TGTTTGCTGAATGTTGTTTA+GGG - chr5_3:14160588-14160607 Msa0800660:intron 30.0%
GTAAAATATTGTTCTTCCTC+AGG + chr5_3:14160666-14160685 None:intergenic 30.0%
! AACAATATTTTACTGCCCAA+TGG - chr5_3:14160673-14160692 Msa0800660:CDS 30.0%
ACTTTACTGGATTTGTATTC+TGG - chr5_3:14161340-14161359 Msa0800660:intron 30.0%
CTTTACTGGATTTGTATTCT+GGG - chr5_3:14161341-14161360 Msa0800660:intron 30.0%
!!! TTGGTTCATTTTAACTTTGC+TGG - chr5_3:14161456-14161475 Msa0800660:intron 30.0%
TCACCTGAATTTAACATTTC+GGG + chr5_3:14161692-14161711 None:intergenic 30.0%
CTCACCTGAATTTAACATTT+CGG + chr5_3:14161693-14161712 None:intergenic 30.0%
AGACTTAAAAAGTCTTCTGT+GGG + chr5_3:14161723-14161742 None:intergenic 30.0%
!! TTTTAAGTCTCCTAAAAGAG+TGG - chr5_3:14161733-14161752 Msa0800660:intron 30.0%
TTTAAGTCTCCTAAAAGAGT+GGG - chr5_3:14161734-14161753 Msa0800660:intron 30.0%
CTTAAGTAAAGCAAAGTTAG+GGG + chr5_3:14162137-14162156 None:intergenic 30.0%
TAGCTATAAGCCTTAAGTAA+CGG + chr5_3:14162166-14162185 None:intergenic 30.0%
TTGAGTACAAGTCAATAATG+AGG + chr5_3:14162317-14162336 None:intergenic 30.0%
GAGAATTGATAAACCATTAG+AGG + chr5_3:14162352-14162371 None:intergenic 30.0%
!! AAGCTGATTTTATTTGTGGT+GGG - chr5_3:14162419-14162438 Msa0800660:CDS 30.0%
!!! GTAGACATTTTGAAATTTGC+TGG - chr5_3:14162583-14162602 Msa0800660:intron 30.0%
!!! ACATTTTGAAATTTGCTGGT+GGG - chr5_3:14162587-14162606 Msa0800660:intron 30.0%
ATGAATTATCAAGCTCGAAT+GGG - chr5_3:14162646-14162665 Msa0800660:intron 30.0%
GAACTTTACTATCACAACAT+GGG + chr5_3:14162978-14162997 None:intergenic 30.0%
AGAACTTTACTATCACAACA+TGG + chr5_3:14162979-14162998 None:intergenic 30.0%
AACAAAATCAACATACTGGT+GGG + chr5_3:14163115-14163134 None:intergenic 30.0%
ATGATGATAGCAATGATGAA+AGG - chr5_3:14163226-14163245 Msa0800660:intron 30.0%
!!! TTTGAGTTTTGAAGTAGTCT+TGG - chr5_3:14163325-14163344 Msa0800660:CDS 30.0%
GATTGTATGAATCTTACTCT+AGG + chr5_3:14163456-14163475 None:intergenic 30.0%
TCCTTCATCATTAAACTGAA+CGG - chr5_3:14163615-14163634 Msa0800660:CDS 30.0%
AGATATGATACCTTCTTCTT+TGG + chr5_3:14163776-14163795 None:intergenic 30.0%
! AGTGCTTGTTAAAGAAAACA+AGG - chr5_3:14163898-14163917 Msa0800660:intron 30.0%
TTAAAGAAAACAAGGTGGAA+TGG - chr5_3:14163906-14163925 Msa0800660:intron 30.0%
TAAAGAAAACAAGGTGGAAT+GGG - chr5_3:14163907-14163926 Msa0800660:intron 30.0%
TACTAATCTTGTCTTGTCTT+AGG - chr5_3:14163975-14163994 Msa0800660:CDS 30.0%
ACTAATCTTGTCTTGTCTTA+GGG - chr5_3:14163976-14163995 Msa0800660:CDS 30.0%
ACAAATGTCATTGCATAATC+TGG + chr5_3:14164059-14164078 None:intergenic 30.0%
CAAACAATAACCTGATTATG+AGG + chr5_3:14164249-14164268 None:intergenic 30.0%
!!! GTTTTAAAGAGGTTTTGCAA+TGG + chr5_3:14164313-14164332 None:intergenic 30.0%
TGTGAAAATTTGTGGATACA+AGG + chr5_3:14164744-14164763 None:intergenic 30.0%
! ATATGAAGTATTTGGAGACA+AGG - chr5_3:14164799-14164818 Msa0800660:intron 30.0%
CATCAACTACATCTAAAGAA+TGG + chr5_3:14165294-14165313 None:intergenic 30.0%
!! TTAGATGTAGTTGATGATGA+TGG - chr5_3:14165298-14165317 Msa0800660:CDS 30.0%
AAATGAAATCAAGATAAGGG+TGG + chr5_3:14165361-14165380 None:intergenic 30.0%
CATTCATTCATACAATTCCA+GGG + chr5_3:14165510-14165529 None:intergenic 30.0%
ACATTCATTCATACAATTCC+AGG + chr5_3:14165511-14165530 None:intergenic 30.0%
!!! GATTTACGAACGCGTTTTTT+AGG + chr5_3:14159405-14159424 None:intergenic 35.0%
AGAAACCAGTTCTTCTTCAA+CGG + chr5_3:14159496-14159515 None:intergenic 35.0%
TTCGCTTTCTTTCTTCTAGA+AGG + chr5_3:14159525-14159544 None:intergenic 35.0%
AAAGAAAGCGAAGCAATCTT+CGG - chr5_3:14159533-14159552 Msa0800660:three_prime_UTR 35.0%
! CCATTTCTTTTGAGCTTCAT+CGG + chr5_3:14159601-14159620 None:intergenic 35.0%
ATAGAAAACTCACTCGTTCT+TGG + chr5_3:14159637-14159656 None:intergenic 35.0%
TGTTGAGAACTTTCTGCTTT+AGG - chr5_3:14159969-14159988 Msa0800660:intron 35.0%
GTTGAGAACTTTCTGCTTTA+GGG - chr5_3:14159970-14159989 Msa0800660:intron 35.0%
!! TCGTTTCTTTGATTTGGTGA+TGG - chr5_3:14160151-14160170 Msa0800660:intron 35.0%
!! TCATTTCTTTGATTTGGTGG+TGG - chr5_3:14160378-14160397 Msa0800660:intron 35.0%
AAACAACACAGTATTCAGCA+TGG + chr5_3:14160516-14160535 None:intergenic 35.0%
! ATGCTGAATACTGTGTTGTT+TGG - chr5_3:14160515-14160534 Msa0800660:intron 35.0%
!! TGCTGAATACTGTGTTGTTT+GGG - chr5_3:14160516-14160535 Msa0800660:intron 35.0%
! GTTTGCTGAATGTTGTTTAG+GGG - chr5_3:14160589-14160608 Msa0800660:intron 35.0%
! TTTGCTGAATGTTGTTTAGG+GGG - chr5_3:14160590-14160609 Msa0800660:intron 35.0%
! TTGGGTTTGTTTAGCTGTTT+AGG - chr5_3:14160745-14160764 Msa0800660:intron 35.0%
! TGGGTTTGTTTAGCTGTTTA+GGG - chr5_3:14160746-14160765 Msa0800660:intron 35.0%
! TTTTGTCAACTAGATTCCCA+TGG + chr5_3:14160819-14160838 None:intergenic 35.0%
GGAATCTAGTTGACAAAAAG+AGG - chr5_3:14160821-14160840 Msa0800660:intron 35.0%
TCAAAATAGAAGTCACAAGG+AGG + chr5_3:14161045-14161064 None:intergenic 35.0%
ACTTTCGCTAACATTGACAA+TGG - chr5_3:14161090-14161109 Msa0800660:intron 35.0%
TGAAGTCTCGCTTTCTATTA+TGG + chr5_3:14161221-14161240 None:intergenic 35.0%
! TCAACACTTTCAAGTGAATC+CGG - chr5_3:14161238-14161257 Msa0800660:intron 35.0%
AAGAATCTAAGAAGCTTGAG+TGG - chr5_3:14161317-14161336 Msa0800660:intron 35.0%
CAAAACATACGTGTGTTTCT+GGG + chr5_3:14161585-14161604 None:intergenic 35.0%
CTTCCCGAAATGTTAAATTC+AGG - chr5_3:14161686-14161705 Msa0800660:intron 35.0%
CGAAATGTTAAATTCAGGTG+AGG - chr5_3:14161691-14161710 Msa0800660:intron 35.0%
GAGACTTAAAAAGTCTTCTG+TGG + chr5_3:14161724-14161743 None:intergenic 35.0%
! ACAGATTCTGATTTGAATGC+TGG - chr5_3:14161798-14161817 Msa0800660:CDS 35.0%
!! CCTGGTTTTTCATCTTCATT+GGG + chr5_3:14161924-14161943 None:intergenic 35.0%
!! TCCTGGTTTTTCATCTTCAT+TGG + chr5_3:14161925-14161944 None:intergenic 35.0%
! TTCTTATCTTTCAGGTGCAT+TGG - chr5_3:14162027-14162046 Msa0800660:intron 35.0%
ACGATTCCAGTTATGATACA+TGG - chr5_3:14162057-14162076 Msa0800660:intron 35.0%
CGATTCCAGTTATGATACAT+GGG - chr5_3:14162058-14162077 Msa0800660:intron 35.0%
TAAGATTTGCCCGTTACTTA+AGG - chr5_3:14162153-14162172 Msa0800660:CDS 35.0%
AGCTATAAGCCTTAAGTAAC+GGG + chr5_3:14162165-14162184 None:intergenic 35.0%
TACAAGTCAATAATGAGGAG+TGG + chr5_3:14162312-14162331 None:intergenic 35.0%
AACCATTAGAGGTGAAAGAA+GGG + chr5_3:14162341-14162360 None:intergenic 35.0%
AAACCATTAGAGGTGAAAGA+AGG + chr5_3:14162342-14162361 None:intergenic 35.0%
TACTACTTTATGCTCGTACA+GGG - chr5_3:14162394-14162413 Msa0800660:CDS 35.0%
CACCACAAATAAAATCAGCT+TGG + chr5_3:14162420-14162439 None:intergenic 35.0%
!! CAAGCTGATTTTATTTGTGG+TGG - chr5_3:14162418-14162437 Msa0800660:CDS 35.0%
TTCTCCATCAGAACATACTT+AGG + chr5_3:14162559-14162578 None:intergenic 35.0%
!!! GACATTTTGAAATTTGCTGG+TGG - chr5_3:14162586-14162605 Msa0800660:intron 35.0%
! CATTCGAGCTTGATAATTCA+TGG + chr5_3:14162647-14162666 None:intergenic 35.0%
CATGAATTATCAAGCTCGAA+TGG - chr5_3:14162645-14162664 Msa0800660:intron 35.0%
TTCTTACTTCAAACTCAGTG+GGG + chr5_3:14162911-14162930 None:intergenic 35.0%
GTTCTTACTTCAAACTCAGT+GGG + chr5_3:14162912-14162931 None:intergenic 35.0%
AGTTCTTACTTCAAACTCAG+TGG + chr5_3:14162913-14162932 None:intergenic 35.0%
! TTGTGCCTTTTTCTTAGACA+AGG - chr5_3:14162950-14162969 Msa0800660:CDS 35.0%
! AAGTTCTAATCAATGCGATC+TGG - chr5_3:14162992-14163011 Msa0800660:CDS 35.0%
! AGTTCTAATCAATGCGATCT+GGG - chr5_3:14162993-14163012 Msa0800660:CDS 35.0%
! TCTGGGTACTTTTATAATGC+AGG - chr5_3:14163010-14163029 Msa0800660:CDS 35.0%
! CAGCTGACAATTTTCATTAG+TGG + chr5_3:14163054-14163073 None:intergenic 35.0%
CACTAATGAAAATTGTCAGC+TGG - chr5_3:14163052-14163071 Msa0800660:CDS 35.0%
GATCATTAATTGCATCCTCA+AGG + chr5_3:14163091-14163110 None:intergenic 35.0%
GAACAAAATCAACATACTGG+TGG + chr5_3:14163116-14163135 None:intergenic 35.0%
GGTGAACAAAATCAACATAC+TGG + chr5_3:14163119-14163138 None:intergenic 35.0%
! TCGGGTTTCTTTTATCAAAC+AGG - chr5_3:14163197-14163216 Msa0800660:intron 35.0%
CCTTCATCATTAAACTGAAC+GGG - chr5_3:14163616-14163635 Msa0800660:CDS 35.0%
!! ATACCTTCTTCTTTGGAATG+TGG + chr5_3:14163769-14163788 None:intergenic 35.0%
! TTGTGCTTGCTTGTCTTTTT+AGG - chr5_3:14163850-14163869 Msa0800660:intron 35.0%
! TGTGCTTGCTTGTCTTTTTA+GGG - chr5_3:14163851-14163870 Msa0800660:intron 35.0%
! GCTTGTTAAAGAAAACAAGG+TGG - chr5_3:14163901-14163920 Msa0800660:intron 35.0%
! GAAAGAGTGCATCTAAAATC+TGG - chr5_3:14163941-14163960 Msa0800660:intron 35.0%
! TCTAAAATCTGGAAAGCCTT+TGG - chr5_3:14163952-14163971 Msa0800660:intron 35.0%
CAAGACAAGATTAGTACCAA+AGG + chr5_3:14163971-14163990 None:intergenic 35.0%
TATGCAATGACATTTGTTCG+TGG - chr5_3:14164062-14164081 Msa0800660:CDS 35.0%
ATGCAATGACATTTGTTCGT+GGG - chr5_3:14164063-14164082 Msa0800660:CDS 35.0%
TTGTGTCTACTGTTGTAACA+AGG - chr5_3:14164217-14164236 Msa0800660:CDS 35.0%
TGTGTCTACTGTTGTAACAA+GGG - chr5_3:14164218-14164237 Msa0800660:CDS 35.0%
AATAACCTGATTATGAGGCT+CGG + chr5_3:14164244-14164263 None:intergenic 35.0%
TGAGAAATGTTATTGACCTC+AGG - chr5_3:14164344-14164363 Msa0800660:intron 35.0%
ATGCTAACATGATAATCCTG+AGG + chr5_3:14164363-14164382 None:intergenic 35.0%
ATCTGACCATGTTCTTTGTT+TGG - chr5_3:14164399-14164418 Msa0800660:intron 35.0%
ACAAGTCCAAACAAAGAACA+TGG + chr5_3:14164408-14164427 None:intergenic 35.0%
TTAGTATTCGAGAGAATGCA+AGG - chr5_3:14164545-14164564 Msa0800660:intron 35.0%
GAAATTGGTAAATGGAGAAC+TGG - chr5_3:14164652-14164671 Msa0800660:intron 35.0%
ATTCCAATCTCCAAATGGAA+GGG + chr5_3:14164845-14164864 None:intergenic 35.0%
AACAGATTCCAATCTCCAAA+TGG + chr5_3:14164850-14164869 None:intergenic 35.0%
! TTGTTGGTTAAGGAATTGGA+AGG + chr5_3:14164873-14164892 None:intergenic 35.0%
! TCAGTTGTTGGTTAAGGAAT+TGG + chr5_3:14164877-14164896 None:intergenic 35.0%
! GCTTAATCAGTTGTTGGTTA+AGG + chr5_3:14164883-14164902 None:intergenic 35.0%
AAGTTCTTTACTGATCCCTT+AGG + chr5_3:14164961-14164980 None:intergenic 35.0%
! GGGATCAGTAAAGAACTTTT+AGG - chr5_3:14164963-14164982 Msa0800660:intron 35.0%
TGCCATGCTATACATAATGA+CGG + chr5_3:14165111-14165130 None:intergenic 35.0%
TAAACCGAATGTGTATCCAA+GGG + chr5_3:14165203-14165222 None:intergenic 35.0%
ACATTCGGTTTAGCAATTCA+AGG - chr5_3:14165211-14165230 Msa0800660:intron 35.0%
AGACAACTTGGGTACTTAAA+GGG + chr5_3:14165268-14165287 None:intergenic 35.0%
TAGACAACTTGGGTACTTAA+AGG + chr5_3:14165269-14165288 None:intergenic 35.0%
! GGAAAAGACATGGATTAATG+AGG + chr5_3:14165340-14165359 None:intergenic 35.0%
!!! GCGTTTTTTAGGCATTGTTG+AGG + chr5_3:14159394-14159413 None:intergenic 40.0%
!!! GGGATTAACCGGAGATTTTT+TGG + chr5_3:14159475-14159494 None:intergenic 40.0%
TCTTCTTCAACGGGATTAAC+CGG + chr5_3:14159486-14159505 None:intergenic 40.0%
TAATCCCGTTGAAGAAGAAC+TGG - chr5_3:14159488-14159507 Msa0800660:intron 40.0%
GAAACCAGTTCTTCTTCAAC+GGG + chr5_3:14159495-14159514 None:intergenic 40.0%
CCGATGAAGCTCAAAAGAAA+TGG - chr5_3:14159598-14159617 Msa0800660:CDS 40.0%
! GTTTTGTAGTGAATCGAGTG+AGG - chr5_3:14159728-14159747 Msa0800660:intron 40.0%
GAGTGAGGATGAAAGTTTGA+AGG - chr5_3:14159743-14159762 Msa0800660:intron 40.0%
TTCCATCAACCTTAGCTTCA+CGG + chr5_3:14159782-14159801 None:intergenic 40.0%
GGAGGATAATGCTTATGTCA+AGG - chr5_3:14159815-14159834 Msa0800660:intron 40.0%
!! TTTGATTTGGTGGTGGAGAA+TGG - chr5_3:14160385-14160404 Msa0800660:intron 40.0%
TTCGGCTCTGTAAAACCATT+GGG + chr5_3:14160691-14160710 None:intergenic 40.0%
GGTAATTTGAATGTGTGTGC+AGG - chr5_3:14160783-14160802 Msa0800660:intron 40.0%
AATGTGTGTGCAGGTGATTA+AGG - chr5_3:14160792-14160811 Msa0800660:CDS 40.0%
! CTACACAAAGCACTTACATC+AGG + chr5_3:14160922-14160941 None:intergenic 40.0%
! CAACACTTTCAAGTGAATCC+GGG - chr5_3:14161239-14161258 Msa0800660:intron 40.0%
TCCGTGCAACTGATAAGAAA+GGG - chr5_3:14161269-14161288 Msa0800660:intron 40.0%
AAATAGACGCTCCAAAGCAA+AGG + chr5_3:14161387-14161406 None:intergenic 40.0%
TTCTGGCATTAAGCTTGTGA+CGG - chr5_3:14161405-14161424 Msa0800660:intron 40.0%
CCAAAACATACGTGTGTTTC+TGG + chr5_3:14161586-14161605 None:intergenic 40.0%
! CCAGAAACACACGTATGTTT+TGG - chr5_3:14161583-14161602 Msa0800660:CDS 40.0%
! AAAGCTTAGCCCACTCTTTT+AGG + chr5_3:14161746-14161765 None:intergenic 40.0%
TGTGACGAGTTTGTACTGAA+TGG - chr5_3:14161765-14161784 Msa0800660:intron 40.0%
AACCTCAAATACCTCAGAGT+CGG + chr5_3:14161871-14161890 None:intergenic 40.0%
CCCAATGAAGATGAAAAACC+AGG - chr5_3:14161921-14161940 Msa0800660:intron 40.0%
! TATCTTTCAGGTGCATTGGA+AGG - chr5_3:14162031-14162050 Msa0800660:intron 40.0%
! ATCTTTCAGGTGCATTGGAA+GGG - chr5_3:14162032-14162051 Msa0800660:intron 40.0%
ACCATTAGAGGTGAAAGAAG+GGG + chr5_3:14162340-14162359 None:intergenic 40.0%
GTACTACTTTATGCTCGTAC+AGG - chr5_3:14162393-14162412 Msa0800660:CDS 40.0%
!! GGCCAAGCTGATTTTATTTG+TGG - chr5_3:14162415-14162434 Msa0800660:CDS 40.0%
AAACCACTAACACCTTGACA+AGG + chr5_3:14162448-14162467 None:intergenic 40.0%
TTAGTGGTTTCAATCGCTTC+AGG - chr5_3:14162458-14162477 Msa0800660:intron 40.0%
GAAGCCTAAGTATGTTCTGA+TGG - chr5_3:14162552-14162571 Msa0800660:intron 40.0%
!! AAATTTGCTGGTGGGTTTCT+GGG - chr5_3:14162595-14162614 Msa0800660:CDS 40.0%
GATAATTCATGGCCACTAGA+CGG + chr5_3:14162636-14162655 None:intergenic 40.0%
AAAACACGCATCCGAAATTG+AGG + chr5_3:14162700-14162719 None:intergenic 40.0%
! TTCGGATGCGTGTTTTTCTT+TGG - chr5_3:14162704-14162723 Msa0800660:intron 40.0%
! TCGGATGCGTGTTTTTCTTT+GGG - chr5_3:14162705-14162724 Msa0800660:intron 40.0%
!! TGAGTTGGTAACGGATATGA+CGG + chr5_3:14162864-14162883 None:intergenic 40.0%
ATATCCGTTACCAACTCATG+AGG - chr5_3:14162866-14162885 Msa0800660:intron 40.0%
!! ACAACCTCATGAGTTGGTAA+CGG + chr5_3:14162873-14162892 None:intergenic 40.0%
GGGTTCCTTGTCTAAGAAAA+AGG + chr5_3:14162958-14162977 None:intergenic 40.0%
ATCCTCAAGGTTTAATGCCT+TGG + chr5_3:14163078-14163097 None:intergenic 40.0%
AGCAATGATGAAAGGAGCTA+TGG - chr5_3:14163234-14163253 Msa0800660:intron 40.0%
GCAATGATGAAAGGAGCTAT+GGG - chr5_3:14163235-14163254 Msa0800660:intron 40.0%
! AACTGCATTTTCTCTCACTC+TGG - chr5_3:14163515-14163534 Msa0800660:CDS 40.0%
GCATGTTGTTACATGTCACA+TGG - chr5_3:14163573-14163592 Msa0800660:CDS 40.0%
CCCGTTCAGTTTAATGATGA+AGG + chr5_3:14163619-14163638 None:intergenic 40.0%
! TGTGTTTTCTACTCCAGAGA+TGG - chr5_3:14163649-14163668 Msa0800660:CDS 40.0%
GCAGAATAATTCACCATCTC+TGG + chr5_3:14163665-14163684 None:intergenic 40.0%
TGATCATACAGCATACCACT+TGG + chr5_3:14163704-14163723 None:intergenic 40.0%
GCAAACTCTCTCATAGTCAT+CGG + chr5_3:14163747-14163766 None:intergenic 40.0%
TTGCCACATTCCAAAGAAGA+AGG - chr5_3:14163763-14163782 Msa0800660:intron 40.0%
! GTGCTTGCTTGTCTTTTTAG+GGG - chr5_3:14163852-14163871 Msa0800660:intron 40.0%
!! TGCTTGCTTGTCTTTTTAGG+GGG - chr5_3:14163853-14163872 Msa0800660:intron 40.0%
!! TTTTTAGGGGGCAAACTTCA+GGG - chr5_3:14163865-14163884 Msa0800660:intron 40.0%
AGATGCACTCTTTCAACAGA+GGG + chr5_3:14163935-14163954 None:intergenic 40.0%
TAGATGCACTCTTTCAACAG+AGG + chr5_3:14163936-14163955 None:intergenic 40.0%
CCTGTGGAAAAAAAAGGTAG+TGG + chr5_3:14164034-14164053 None:intergenic 40.0%
!!! CCACTACCTTTTTTTTCCAC+AGG - chr5_3:14164031-14164050 Msa0800660:CDS 40.0%
CTGGAACCTGTGGAAAAAAA+AGG + chr5_3:14164040-14164059 None:intergenic 40.0%
! ATTGCATAATCTGGAACCTG+TGG + chr5_3:14164050-14164069 None:intergenic 40.0%
ATGTATCTGCTGAACACAAC+AGG - chr5_3:14164166-14164185 Msa0800660:intron 40.0%
! TAAAGAGGTTTTGCAATGGG+AGG + chr5_3:14164309-14164328 None:intergenic 40.0%
ACCTGGAAATGGAATGACAT+GGG + chr5_3:14164496-14164515 None:intergenic 40.0%
AACCTGGAAATGGAATGACA+TGG + chr5_3:14164497-14164516 None:intergenic 40.0%
! CTAAGAACTCTGTCTTGTTC+TGG + chr5_3:14164529-14164548 None:intergenic 40.0%
ACACATACCTCTGTTTGACA+GGG + chr5_3:14164606-14164625 None:intergenic 40.0%
AACACATACCTCTGTTTGAC+AGG + chr5_3:14164607-14164626 None:intergenic 40.0%
! ACAGAGGTATGTGTTTGAAC+TGG - chr5_3:14164612-14164631 Msa0800660:intron 40.0%
! GAAGTATTTGGAGACAAGGA+TGG - chr5_3:14164803-14164822 Msa0800660:intron 40.0%
GATTCCAATCTCCAAATGGA+AGG + chr5_3:14164846-14164865 None:intergenic 40.0%
ACTGCTCAATAACTCTCCTA+AGG - chr5_3:14164942-14164961 Msa0800660:intron 40.0%
CTGCTCAATAACTCTCCTAA+GGG - chr5_3:14164943-14164962 Msa0800660:intron 40.0%
TCCCGTCATTATGTATAGCA+TGG - chr5_3:14165106-14165125 Msa0800660:CDS 40.0%
GCCATGCTATACATAATGAC+GGG + chr5_3:14165110-14165129 None:intergenic 40.0%
TAATGCAGGTACATGCAAGT+TGG - chr5_3:14165148-14165167 Msa0800660:intron 40.0%
CTAAACCGAATGTGTATCCA+AGG + chr5_3:14165204-14165223 None:intergenic 40.0%
TTAAAGGGGAGAGTTGTCAA+AGG + chr5_3:14165253-14165272 None:intergenic 40.0%
GACAACTTGGGTACTTAAAG+GGG + chr5_3:14165267-14165286 None:intergenic 40.0%
!! AAGAATGGGCTAGACAACTT+GGG + chr5_3:14165279-14165298 None:intergenic 40.0%
!! AAAGAATGGGCTAGACAACT+TGG + chr5_3:14165280-14165299 None:intergenic 40.0%
AGATAAGGGTGGAAAAGACA+TGG + chr5_3:14165350-14165369 None:intergenic 40.0%
AGAGAAGAGGAAAAGCGAAG+CGG + chr5_3:14159270-14159289 None:intergenic 45.0%
TCGTTCCTCGTTCTTCTCAA+CGG - chr5_3:14159442-14159461 Msa0800660:intron 45.0%
TTCTTCCGTTGAGAAGAACG+AGG + chr5_3:14159450-14159469 None:intergenic 45.0%
! TTCTTTTGAGCTTCATCGGC+CGG + chr5_3:14159597-14159616 None:intergenic 45.0%
! CTCACTCGTTCTTGGTGTAT+CGG + chr5_3:14159629-14159648 None:intergenic 45.0%
GTTTCACTACCGTGAAGCTA+AGG - chr5_3:14159770-14159789 Msa0800660:intron 45.0%
TACCGTGAAGCTAAGGTTGA+TGG - chr5_3:14159777-14159796 Msa0800660:intron 45.0%
! AATGTTGTTTAGGGGGAGGA+AGG - chr5_3:14160597-14160616 Msa0800660:intron 45.0%
GGATTACATCGCTACGATTG+TGG - chr5_3:14160626-14160645 Msa0800660:intron 45.0%
! GGAGATGTTTGAAACTCCTG+AGG - chr5_3:14160647-14160666 Msa0800660:CDS 45.0%
CTTCGGCTCTGTAAAACCAT+TGG + chr5_3:14160692-14160711 None:intergenic 45.0%
TGCAGGTGATTAAGGACCAT+GGG - chr5_3:14160800-14160819 Msa0800660:CDS 45.0%
GTCTCGCTTTCTATTATGGC+AGG + chr5_3:14161217-14161236 None:intergenic 45.0%
CTTATCAGTTGCACGGACAT+TGG + chr5_3:14161266-14161285 None:intergenic 45.0%
GTCCGTGCAACTGATAAGAA+AGG - chr5_3:14161268-14161287 Msa0800660:intron 45.0%
CCCCTTTCTTATCAGTTGCA+CGG + chr5_3:14161273-14161292 None:intergenic 45.0%
CCGTGCAACTGATAAGAAAG+GGG - chr5_3:14161270-14161289 Msa0800660:intron 45.0%
! GAAGCTTGAGTGGACTTTAC+TGG - chr5_3:14161327-14161346 Msa0800660:intron 45.0%
CTGGATTTGTATTCTGGGTG+TGG - chr5_3:14161346-14161365 Msa0800660:intron 45.0%
!! TGCTTTGGAGCGTCTATTTC+TGG - chr5_3:14161388-14161407 Msa0800660:intron 45.0%
!! TGACTTGAAGAAATGGGCTG+TGG - chr5_3:14161519-14161538 Msa0800660:intron 45.0%
! AGAAGCTGATGATGAAGCGA+TGG - chr5_3:14161836-14161855 Msa0800660:CDS 45.0%
GGATAATTCATCCGACTCTG+AGG - chr5_3:14161857-14161876 Msa0800660:intron 45.0%
!! ATCCGACTCTGAGGTATTTG+AGG - chr5_3:14161866-14161885 Msa0800660:intron 45.0%
AGACTACTCTCCATCTGCTA+TGG - chr5_3:14161894-14161913 Msa0800660:intron 45.0%
ATTGGGATCACCATAGCAGA+TGG + chr5_3:14161907-14161926 None:intergenic 45.0%
ACCCCTTCTTTCACCTCTAA+TGG - chr5_3:14162336-14162355 Msa0800660:CDS 45.0%
!! GAAATTTGCTGGTGGGTTTC+TGG - chr5_3:14162594-14162613 Msa0800660:CDS 45.0%
!! AATTTGCTGGTGGGTTTCTG+GGG - chr5_3:14162596-14162615 Msa0800660:CDS 45.0%
TCAAGCTCGAATGGGAATGA+TGG - chr5_3:14162654-14162673 Msa0800660:intron 45.0%
CATACGGCCTTCCTCAATTT+CGG - chr5_3:14162686-14162705 Msa0800660:intron 45.0%
! CGGATGCGTGTTTTTCTTTG+GGG - chr5_3:14162706-14162725 Msa0800660:intron 45.0%
! AAGCAATGGCCTTACTTCAG+TGG + chr5_3:14162740-14162759 None:intergenic 45.0%
CTCGATACAACCTCATGAGT+TGG + chr5_3:14162879-14162898 None:intergenic 45.0%
TGAAAATTGTCAGCTGGCCA+AGG - chr5_3:14163058-14163077 Msa0800660:CDS 45.0%
GTGGTATGCTGTATGATCAC+AGG - chr5_3:14163705-14163724 Msa0800660:intron 45.0%
!! CTTTTTAGGGGGCAAACTTC+AGG - chr5_3:14163864-14163883 Msa0800660:intron 45.0%
CTTTAACAAGCACTCCCTTG+AGG + chr5_3:14163892-14163911 None:intergenic 45.0%
GATGCACTCTTTCAACAGAG+GGG + chr5_3:14163934-14163953 None:intergenic 45.0%
TCCCATGTCATTCCATTTCC+AGG - chr5_3:14164492-14164511 Msa0800660:intron 45.0%
GATGGAGAAGAACCTGGAAA+TGG + chr5_3:14164507-14164526 None:intergenic 45.0%
! GAACTCTGTCTTGTTCTGGA+TGG + chr5_3:14164525-14164544 None:intergenic 45.0%
CCACAAAGCTTATAGCAGTC+TGG + chr5_3:14164583-14164602 None:intergenic 45.0%
CCAGACTGCTATAAGCTTTG+TGG - chr5_3:14164580-14164599 Msa0800660:intron 45.0%
GTTCAGTCTTCCCTTCCATT+TGG - chr5_3:14164832-14164851 Msa0800660:intron 45.0%
CTTCCCTTCCATTTGGAGAT+TGG - chr5_3:14164839-14164858 Msa0800660:intron 45.0%
! AAATGCAGTTGCTGTTCCTG+TGG - chr5_3:14165171-14165190 Msa0800660:intron 45.0%
GAATGTGTATCCAAGGGCAA+GGG + chr5_3:14165197-14165216 None:intergenic 45.0%
CTTGCCCTTGGATACACATT+CGG - chr5_3:14165196-14165215 Msa0800660:intron 45.0%
GCAATTCAAGGACTCTCTGA+TGG - chr5_3:14165223-14165242 Msa0800660:intron 45.0%
TTCCAGGGCCTGAATATTCT+TGG + chr5_3:14165495-14165514 None:intergenic 45.0%
GAGAAGAGGAAAAGCGAAGC+GGG + chr5_3:14159269-14159288 None:intergenic 50.0%
! AGGAACGACGTCGTCTTGTT+TGG + chr5_3:14159430-14159449 None:intergenic 50.0%
TCCGACGATGCATTCTTCGT+CGG - chr5_3:14159561-14159580 Msa0800660:CDS 50.0%
TCCGACGAAGAATGCATCGT+CGG + chr5_3:14159565-14159584 None:intergenic 50.0%
CTTCGTCGGAGAACCTATTC+CGG - chr5_3:14159575-14159594 Msa0800660:CDS 50.0%
! TCGTTCTTGGTGTATCGGTG+AGG + chr5_3:14159624-14159643 None:intergenic 50.0%
! GCTGAATGTTGTTTAGGGGG+AGG - chr5_3:14160593-14160612 Msa0800660:intron 50.0%
TTAGGGGGAGGAAGGAAAAG+AGG - chr5_3:14160605-14160624 Msa0800660:intron 50.0%
GTGCAGGTGATTAAGGACCA+TGG - chr5_3:14160799-14160818 Msa0800660:CDS 50.0%
! GGCAGGTGCTGTATCAATCA+GGG + chr5_3:14161200-14161219 None:intergenic 50.0%
! TGGCAGGTGCTGTATCAATC+AGG + chr5_3:14161201-14161220 None:intergenic 50.0%
!! ATGTCCACTGGCCTTTGCTT+TGG - chr5_3:14161373-14161392 Msa0800660:intron 50.0%
GAATGCTGGCAAAGAAGCTG+AGG - chr5_3:14161812-14161831 Msa0800660:CDS 50.0%
GGGCTCCCATGTATCATAAC+TGG + chr5_3:14162066-14162085 None:intergenic 50.0%
ACATACCTCAAGCCCTCGAT+GGG + chr5_3:14162086-14162105 None:intergenic 50.0%
AACATACCTCAAGCCCTCGA+TGG + chr5_3:14162087-14162106 None:intergenic 50.0%
GTGGTGAGACTTACAGGAAG+AGG + chr5_3:14162293-14162312 None:intergenic 50.0%
TGAGGAGTGGTGAGACTTAC+AGG + chr5_3:14162299-14162318 None:intergenic 50.0%
CCACTAACACCTTGACAAGG+TGG + chr5_3:14162445-14162464 None:intergenic 50.0%
! CCACCTTGTCAAGGTGTTAG+TGG - chr5_3:14162442-14162461 Msa0800660:CDS 50.0%
CAGGAACAAAAATGCGCCGT+TGG - chr5_3:14162477-14162496 Msa0800660:intron 50.0%
GAACAAAAATGCGCCGTTGG+AGG - chr5_3:14162480-14162499 Msa0800660:intron 50.0%
!! TTTCTGGGGCGTTATGCTGT+GGG - chr5_3:14162610-14162629 Msa0800660:CDS 50.0%
GAATGGGAATGATGGCTGCA+GGG - chr5_3:14162662-14162681 Msa0800660:intron 50.0%
ATGATGGCTGCAGGGTCATA+CGG - chr5_3:14162670-14162689 Msa0800660:intron 50.0%
CACGCATCCGAAATTGAGGA+AGG + chr5_3:14162696-14162715 None:intergenic 50.0%
GAGCTCTTGCCACTGAAGTA+AGG - chr5_3:14162728-14162747 Msa0800660:intron 50.0%
! GGCCAAGGCATTAAACCTTG+AGG - chr5_3:14163073-14163092 Msa0800660:CDS 50.0%
GACTCTCAAAGTGCACCAAG+TGG - chr5_3:14163686-14163705 Msa0800660:intron 50.0%
GCAAACTTCAGGGACCTCAA+GGG - chr5_3:14163875-14163894 Msa0800660:intron 50.0%
GCTGAACACAACAGGCCATT+TGG - chr5_3:14164174-14164193 Msa0800660:CDS 50.0%
! ACAGGCCATTTGGTCGACTT+TGG - chr5_3:14164184-14164203 Msa0800660:CDS 50.0%
! GCCATTTGGTCGACTTTGGT+GGG - chr5_3:14164188-14164207 Msa0800660:CDS 50.0%
TCCCACCAAAGTCGACCAAA+TGG + chr5_3:14164192-14164211 None:intergenic 50.0%
! GTTCTGGATGGAGAAGAACC+TGG + chr5_3:14164513-14164532 None:intergenic 50.0%
CGAGAGAATGCAAGGCTACA+AGG - chr5_3:14164553-14164572 Msa0800660:intron 50.0%
TTTGTGGCCCTGTCAAACAG+AGG - chr5_3:14164596-14164615 Msa0800660:intron 50.0%
CGAATGTGTATCCAAGGGCA+AGG + chr5_3:14165198-14165217 None:intergenic 50.0%
AGCCAAGAATATTCAGGCCC+TGG - chr5_3:14165490-14165509 Msa0800660:five_prime_UTR 50.0%
TGAGCTTCATCGGCCGGAAT+AGG + chr5_3:14159591-14159610 None:intergenic 55.0%
AGTTGCACGGACATTGGACC+CGG + chr5_3:14161260-14161279 None:intergenic 55.0%
TGATACATGGGAGCCCATCG+AGG - chr5_3:14162070-14162089 Msa0800660:intron 55.0%
GATACATGGGAGCCCATCGA+GGG - chr5_3:14162071-14162090 Msa0800660:intron 55.0%
!! GTTTCTGGGGCGTTATGCTG+TGG - chr5_3:14162609-14162628 Msa0800660:CDS 55.0%
TTATGCTGTGGGCCGTCTAG+TGG - chr5_3:14162621-14162640 Msa0800660:CDS 55.0%
CGAATGGGAATGATGGCTGC+AGG - chr5_3:14162661-14162680 Msa0800660:intron 55.0%
GGCAAACTTCAGGGACCTCA+AGG - chr5_3:14163874-14163893 Msa0800660:intron 55.0%
! GGCCATTTGGTCGACTTTGG+TGG - chr5_3:14164187-14164206 Msa0800660:CDS 55.0%
AAGGGCCGAGCCTCATAATC+AGG - chr5_3:14164236-14164255 Msa0800660:CDS 55.0%
!! CACTGAGCGGGTTGAAGTGC+CGG - chr5_3:14159196-14159215 Msa0800660:three_prime_UTR 60.0%
!! ACTGAGCGGGTTGAAGTGCC+GGG - chr5_3:14159197-14159216 Msa0800660:three_prime_UTR 60.0%
GGGTGTGGAGCTATGTCCAC+TGG - chr5_3:14161361-14161380 Msa0800660:intron 60.0%
CGCTCCAAAGCAAAGGCCAG+TGG + chr5_3:14161380-14161399 None:intergenic 60.0%
!! TGTGGTGGGCCACCTTGTCA+AGG - chr5_3:14162433-14162452 Msa0800660:CDS 60.0%
TATCCAAGGGCAAGGGCCAC+AGG + chr5_3:14165190-14165209 None:intergenic 60.0%
GTTCCTGTGGCCCTTGCCCT+TGG - chr5_3:14165184-14165203 Msa0800660:intron 65.0%
GGGAGCCCATCGAGGGCTTG+AGG - chr5_3:14162078-14162097 Msa0800660:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 14159192 14165696 14159192 ID=Msa0800660;Name=Msa0800660
chr5_3 mRNA 14159192 14165696 14159192 ID=Msa0800660-mRNA-1;Parent=Msa0800660;Name=Msa0800660-mRNA-1;_AED=0.13;_eAED=0.13;_QI=207|0.95|0.95|1|0.90|0.86|22|226|843
chr5_3 exon 14159192 14159304 14159192 ID=Msa0800660-mRNA-1:exon:5901;Parent=Msa0800660-mRNA-1
chr5_3 exon 14159345 14159398 14159345 ID=Msa0800660-mRNA-1:exon:5900;Parent=Msa0800660-mRNA-1
chr5_3 exon 14159499 14159732 14159499 ID=Msa0800660-mRNA-1:exon:5899;Parent=Msa0800660-mRNA-1
chr5_3 exon 14160271 14160374 14160271 ID=Msa0800660-mRNA-1:exon:5898;Parent=Msa0800660-mRNA-1
chr5_3 exon 14160631 14160700 14160631 ID=Msa0800660-mRNA-1:exon:5897;Parent=Msa0800660-mRNA-1
chr5_3 exon 14160792 14160835 14160792 ID=Msa0800660-mRNA-1:exon:5896;Parent=Msa0800660-mRNA-1
chr5_3 exon 14160915 14161016 14160915 ID=Msa0800660-mRNA-1:exon:5895;Parent=Msa0800660-mRNA-1
chr5_3 exon 14161104 14161222 14161104 ID=Msa0800660-mRNA-1:exon:5894;Parent=Msa0800660-mRNA-1
chr5_3 exon 14161582 14161669 14161582 ID=Msa0800660-mRNA-1:exon:5893;Parent=Msa0800660-mRNA-1
chr5_3 exon 14161770 14161856 14161770 ID=Msa0800660-mRNA-1:exon:5892;Parent=Msa0800660-mRNA-1
chr5_3 exon 14161941 14162033 14161941 ID=Msa0800660-mRNA-1:exon:5891;Parent=Msa0800660-mRNA-1
chr5_3 exon 14162144 14162473 14162144 ID=Msa0800660-mRNA-1:exon:5890;Parent=Msa0800660-mRNA-1
chr5_3 exon 14162590 14162656 14162590 ID=Msa0800660-mRNA-1:exon:5889;Parent=Msa0800660-mRNA-1
chr5_3 exon 14162789 14162847 14162789 ID=Msa0800660-mRNA-1:exon:5888;Parent=Msa0800660-mRNA-1
chr5_3 exon 14162932 14163180 14162932 ID=Msa0800660-mRNA-1:exon:5887;Parent=Msa0800660-mRNA-1
chr5_3 exon 14163294 14163359 14163294 ID=Msa0800660-mRNA-1:exon:5886;Parent=Msa0800660-mRNA-1
chr5_3 exon 14163462 14163676 14163462 ID=Msa0800660-mRNA-1:exon:5885;Parent=Msa0800660-mRNA-1
chr5_3 exon 14163777 14163867 14163777 ID=Msa0800660-mRNA-1:exon:5884;Parent=Msa0800660-mRNA-1
chr5_3 exon 14163964 14164083 14163964 ID=Msa0800660-mRNA-1:exon:5883;Parent=Msa0800660-mRNA-1
chr5_3 exon 14164172 14164279 14164172 ID=Msa0800660-mRNA-1:exon:5882;Parent=Msa0800660-mRNA-1
chr5_3 exon 14165052 14165151 14165052 ID=Msa0800660-mRNA-1:exon:5881;Parent=Msa0800660-mRNA-1
chr5_3 exon 14165245 14165696 14165245 ID=Msa0800660-mRNA-1:exon:5880;Parent=Msa0800660-mRNA-1
chr5_3 five_prime_UTR 14165490 14165696 14165490 ID=Msa0800660-mRNA-1:five_prime_utr;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14165245 14165489 14165245 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14165052 14165151 14165052 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14164172 14164279 14164172 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14163964 14164083 14163964 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14163777 14163867 14163777 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14163462 14163676 14163462 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14163294 14163359 14163294 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14162932 14163180 14162932 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14162789 14162847 14162789 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14162590 14162656 14162590 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14162144 14162473 14162144 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14161941 14162033 14161941 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14161770 14161856 14161770 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14161582 14161669 14161582 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14161104 14161222 14161104 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14160915 14161016 14160915 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14160792 14160835 14160792 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14160631 14160700 14160631 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14160271 14160374 14160271 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 CDS 14159558 14159732 14159558 ID=Msa0800660-mRNA-1:cds;Parent=Msa0800660-mRNA-1
chr5_3 three_prime_UTR 14159499 14159557 14159499 ID=Msa0800660-mRNA-1:three_prime_utr;Parent=Msa0800660-mRNA-1
chr5_3 three_prime_UTR 14159345 14159398 14159345 ID=Msa0800660-mRNA-1:three_prime_utr;Parent=Msa0800660-mRNA-1
chr5_3 three_prime_UTR 14159192 14159304 14159192 ID=Msa0800660-mRNA-1:three_prime_utr;Parent=Msa0800660-mRNA-1
Gene Sequence

>Msa0800660

ATGCCTAAAAAACGCGTTCGTAAATCTTCCAAACAAGACGACGTCGTTCCTCGTTCTTCTCAACGGAAGAAATCCAAAAAATCTCCGGTTAATCCCGTTGAAGAAGAACTGGTTTCTCTTCTTCCTTCTAGAAGAAAGAAAGCGAAGCAATCTTCGGTCAATTCCGACGATGCATTCTTCGTCGGAGAACCTATTCCGGCCGATGAAGCTCAAAAGAAATGGCCTCACCGATACACCAAGAACGATGAATCGAGTGAGGATGAAAGTTTGAAGGCGAAGTTTCACTACCGTGAAGCTAAGGTTGATGGAATTTTATATAAGCTGGAGGATAATGCTTATGTCAAGGGGGAGGAAGGAAAAGAGGATTACATCGCTACGATTGTGGAGATGTTTGAAACTCCTGAGGAAGAACAATATTTTACTGCCCAATGGTTTTACAGAGCCGAAGACACTGTGATTAAGGACCATGGGAATCTAGTTGACAAAAAGAGGATTTTTAAATCTGATGTAAAAGATGAAAATCCTTTAGATTGTTTAGTTAGGAAAATAAACATTGTACAAATTTCTCCTGATGCTGCAAAAAAGAAGAAATTTCCTCCTTGTGACTTCTATTTTGATATGAAGTACACTGTGCCATATTTAACTTTCGCTAACATTGACAATGCACCTGCCATAATAGAAAGCGAGACTTCAACACTTTCAAGTGAATCCGGGTCCAATGTCCGTGCAACTGATAAGAAAGGGGTTAAAGAAAAACCAACTCAAATTAAAGAATCTAAGAAGCTTGAGTGGACTTTACTGGATTTGTATTCTGGGTGTGGAGCTATGTCCACTGGCCTTTGCTTTGGAGCGTCTATTTCTGGCATTAAGCTTGTGACGAAATGGGCTGTGGATATAAATGAACATGCTTGCGAGAGTCTAAAGCTGAATCACCCAGAAACACACGTGAGGAATGAACCCACAGAAGACTTTTTAAGTCTCCTAAAAGAGTGGGCTAAGCTTTGTGACGAGTTTGTACTGAATGGAGCAGAAAGTACAGATTCTGATTTGAATGCTGGCAAAGAAGCTGAGGAAGAAGCTGATGATGAAGCGATGGATAATTCATCCGACTCTGAGGTATTTGAGGTTGAAAGACTACTCTCCATCTGCTATGGTGATCCCAATGAAGATGAAAAACCAGGACTTTATTTTAAAGTGCATTGGAAGGGTTACGATTCCAGTTATGATACATGGGAGCCCATCGAGGGCTTGAGCGAGTGTAAAGATGCTATGAAAGATTTTGTTATAAATGGATATAAGGAAAAGATACTGCCTCTTCCTGGCCAAGCTGATTTTATTTGTGGTGGGCCACCTTGTCAAGGTGTTAGTGGTTTCAATCGCTTCAGGAACAAAAATGCGCCGTTGGAGGATGAAAAAAATAAGCAATTAATTGTTTACATGAACATTATTGATTTCTTGAAGCCTAAGTATGTTCTGATGGAGAATGTTGTAGACATTTTGAAATTTGCTGGTGGGTTTCTGGGGCGTTATGCTGTGGGCCGTCTAGTGGCCATGAATTATCAAGCTCGAATGGGAATGATGGCTGCAGGGTCATACGGCCTTCCTCAATTTCGGATGCGTGTTTTTCTTTGGGGAGCTCTTGCCACTGAAAAATTACCGTCATATCCGTTACCAACTCATGAGGTTGTATCGAGATCAGTCATCCCCACTGAGTTTGAAGTAAGAACTGATAGAAATAGAGATGAAATTACAGTTGCATATTCCACTAATGAAAATTGTCAGCTGGCCAAGGCATTAAACCTTGAGGATGCAATTAATGATCTCCCACCAGTTGAAAATGATGATAGCAATGATGAAAGGAGCTATGGGACTACTCCTCGTACTGATTTTCAAAAATATATCAGATTAAAGAGAAGTGAGATGGTGAATTATTCTGCTGACTCTCAAAGTGCACCAAGTGGTATGCTGTATGATCACAGGCCTTTGAAATTAAATACCGATGACTATGAGAGAGTTTGCCACATTCCAAAGAAGAAGGGGGCAAACTTCAGGGACCTCAAGGGAGTGCTTGTTAAAGAAAACAAGGTGGAATGGGACCCCTCTGTTGAAAGAGTGCATCTAAAATCTGGAAAGCCTTTGGTTCCAGATTATGCAATGACATTTGTTCGTGGGACCTCTTCTAAGCCATTTGGTCGACTTTGGTGGGACGAAATTGTGTCTACTGTTGTAACAAGGGCCGAGCCTCATAATCAGGTTCTTCTCCATCCAGAACAAGACAGAGTTCTTAGTATTCGAGAGAATGCAAGGCTACAAGGATTTCCAGACTGCTATAAGCTTTGTGGCCCTGTCAAACAGAGGTACATGCAAGTTGGAAATGCAGTTGCTGTTCCTGTGGCCCTTGCCCTTGGATACACATTCGGTTTAGCAATTCAAGGACTCTCTGATGGCAGTCCTTTGACAACTCTCCCCTTTAAGTACCCAAGTTGTCTAGCCCATTCTTTAGATGTAGTTGATGATGATGGCTCAAGCTGA
Protein sequence

>Msa0800660

MPKKRVRKSSKQDDVVPRSSQRKKSKKSPVNPVEEELVSLLPSRRKKAKQSSVNSDDAFFVGEPIPADEAQKKWPHRYTKNDESSEDESLKAKFHYREAKVDGILYKLEDNAYVKGEEGKEDYIATIVEMFETPEEEQYFTAQWFYRAEDTVIKDHGNLVDKKRIFKSDVKDENPLDCLVRKINIVQISPDAAKKKKFPPCDFYFDMKYTVPYLTFANIDNAPAIIESETSTLSSESGSNVRATDKKGVKEKPTQIKESKKLEWTLLDLYSGCGAMSTGLCFGASISGIKLVTKWAVDINEHACESLKLNHPETHVRNEPTEDFLSLLKEWAKLCDEFVLNGAESTDSDLNAGKEAEEEADDEAMDNSSDSEVFEVERLLSICYGDPNEDEKPGLYFKVHWKGYDSSYDTWEPIEGLSECKDAMKDFVINGYKEKILPLPGQADFICGGPPCQGVSGFNRFRNKNAPLEDEKNKQLIVYMNIIDFLKPKYVLMENVVDILKFAGGFLGRYAVGRLVAMNYQARMGMMAAGSYGLPQFRMRVFLWGALATEKLPSYPLPTHEVVSRSVIPTEFEVRTDRNRDEITVAYSTNENCQLAKALNLEDAINDLPPVENDDSNDERSYGTTPRTDFQKYIRLKRSEMVNYSADSQSAPSGMLYDHRPLKLNTDDYERVCHIPKKKGANFRDLKGVLVKENKVEWDPSVERVHLKSGKPLVPDYAMTFVRGTSSKPFGRLWWDEIVSTVVTRAEPHNQVLLHPEQDRVLSIRENARLQGFPDCYKLCGPVKQRYMQVGNAVAVPVALALGYTFGLAIQGLSDGSPLTTLPFKYPSCLAHSLDVVDDDGSS*