Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050390 | XP_013447608.2 | 88.495 | 930 | 106 | 1 | 1 | 930 | 1 | 929 | 0.0 | 1598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050390 | sp|Q9LF24|LNG1_ARATH | 32.620 | 794 | 379 | 33 | 194 | 917 | 204 | 911 | 6.40e-67 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050390 | A0A396GV94 | 88.495 | 930 | 106 | 1 | 1 | 930 | 1 | 929 | 0.0 | 1598 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0118570 | Msa1050390 | 0.814060 | 1.867013e-51 | -8.615850e-47 |
| Msa0683570 | Msa1050390 | 0.823212 | 1.564138e-53 | -8.615850e-47 |
| Msa0738040 | Msa1050390 | 0.801511 | 8.699515e-49 | -8.615850e-47 |
| Msa0197930 | Msa1050390 | 0.802958 | 4.381628e-49 | -8.615850e-47 |
| Msa0475790 | Msa1050390 | 0.812077 | 5.084050e-51 | -8.615850e-47 |
| Msa1037920 | Msa1050390 | 0.810053 | 1.395288e-50 | -8.615850e-47 |
| Msa1050390 | Msa1066490 | 0.808017 | 3.807120e-50 | -8.615850e-47 |
| Msa1050390 | Msa1139810 | 0.805022 | 1.631678e-49 | -8.615850e-47 |
| Msa1050390 | Msa1303250 | 0.815108 | 1.094603e-51 | -8.615850e-47 |
| Msa1050390 | Msa1346280 | 0.806009 | 1.012787e-49 | -8.615850e-47 |
| Msa1050390 | Msa1459380 | 0.803936 | 2.747690e-49 | -8.615850e-47 |
| Msa0239570 | Msa1050390 | 0.808249 | 3.398433e-50 | -8.615850e-47 |
| Msa0316810 | Msa1050390 | 0.801241 | 9.879154e-49 | -8.615850e-47 |
| Msa0317280 | Msa1050390 | 0.813183 | 2.911912e-51 | -8.615850e-47 |
| Msa0582450 | Msa1050390 | 0.805805 | 1.117793e-49 | -8.615850e-47 |
| Msa0586190 | Msa1050390 | 0.803450 | 3.466604e-49 | -8.615850e-47 |
| Msa0896540 | Msa1050390 | 0.807535 | 4.820787e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050390 | MtrunA17_Chr7g0219501 | 88.495 | 930 | 106 | 1 | 1 | 930 | 1 | 929 | 0.0 | 1598 |
| Msa1050390 | MtrunA17_Chr6g0454791 | 44.214 | 1011 | 362 | 29 | 1 | 921 | 1 | 899 | 0.0 | 643 |
| Msa1050390 | MtrunA17_Chr3g0087021 | 31.603 | 1098 | 540 | 40 | 1 | 915 | 1 | 1070 | 8.39e-91 | 311 |
| Msa1050390 | MtrunA17_Chr7g0260511 | 30.242 | 248 | 122 | 9 | 670 | 914 | 434 | 633 | 1.02e-14 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050390 | AT1G74160.1 | 31.328 | 1047 | 547 | 37 | 1 | 915 | 1 | 1007 | 6.89e-91 | 311 |
| Msa1050390 | AT1G74160.3 | 30.684 | 906 | 479 | 32 | 124 | 915 | 5 | 875 | 6.55e-75 | 264 |
| Msa1050390 | AT1G74160.2 | 30.684 | 906 | 479 | 32 | 124 | 915 | 5 | 875 | 6.55e-75 | 264 |
| Msa1050390 | AT5G15580.1 | 32.620 | 794 | 379 | 33 | 194 | 917 | 204 | 911 | 6.51e-68 | 244 |
| Msa1050390 | AT1G18620.4 | 29.194 | 1055 | 533 | 40 | 1 | 926 | 1 | 970 | 6.78e-66 | 239 |
| Msa1050390 | AT1G18620.1 | 29.194 | 1055 | 533 | 40 | 1 | 926 | 1 | 970 | 6.78e-66 | 239 |
| Msa1050390 | AT1G18620.3 | 29.194 | 1055 | 533 | 40 | 1 | 926 | 1 | 970 | 6.78e-66 | 239 |
| Msa1050390 | AT1G18620.2 | 28.846 | 1040 | 526 | 40 | 16 | 926 | 52 | 1006 | 1.14e-61 | 227 |
| Msa1050390 | AT3G02170.1 | 30.357 | 784 | 396 | 32 | 194 | 912 | 205 | 903 | 4.41e-60 | 221 |
| Msa1050390 | AT1G18620.5 | 29.039 | 916 | 456 | 37 | 121 | 926 | 1 | 832 | 3.82e-53 | 200 |
| Msa1050390 | AT3G02170.2 | 30.220 | 546 | 272 | 22 | 194 | 709 | 205 | 671 | 3.31e-33 | 137 |
| Msa1050390 | AT3G02170.3 | 28.601 | 486 | 247 | 20 | 194 | 656 | 205 | 613 | 1.99e-23 | 106 |
Find 145 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTCTTTGTTGCCATTAT+TGG | 0.132998 | 7_2:+14941860 | None:intergenic |
| TCGAGTGCAGAGAATAATTT+TGG | 0.155783 | 7_2:+14938828 | None:intergenic |
| CAGGATAGAGATGAATATTT+TGG | 0.218585 | 7_2:-14940141 | Msa1050390:CDS |
| AAGTGCTCTTAGATCCTTTC+CGG | 0.221905 | 7_2:+14940779 | None:intergenic |
| AAGCCTTCTCTTTCTGTATA+TGG | 0.253219 | 7_2:-14940843 | Msa1050390:CDS |
| TCTAGCATAAATCGCGAATA+TGG | 0.253700 | 7_2:+14940957 | None:intergenic |
| GATGAACTAGTAAACAATTT+TGG | 0.267517 | 7_2:-14938414 | Msa1050390:CDS |
| TGAAGGATCGCAACACAATT+TGG | 0.267743 | 7_2:-14938521 | Msa1050390:CDS |
| TTCTGTAGAAGGATGATTAT+TGG | 0.269395 | 7_2:+14940542 | None:intergenic |
| AGATGCATTCTGAATGTATT+TGG | 0.275771 | 7_2:+14943831 | None:intergenic |
| CAAATCAAACTTCCATTTGT+TGG | 0.276978 | 7_2:+14940480 | None:intergenic |
| AACTTTAGCTTAGGAGTTAG+AGG | 0.289462 | 7_2:-14938356 | Msa1050390:three_prime_UTR |
| CTCGGACTTTGAACTTTAGA+AGG | 0.290816 | 7_2:+14940678 | None:intergenic |
| ATGATGTGAAGCAAATTTCT+AGG | 0.295299 | 7_2:-14938767 | Msa1050390:CDS |
| ATGATTTACAACCTCAAAAT+AGG | 0.299379 | 7_2:-14938602 | Msa1050390:CDS |
| CAAGAATTGCAGAAGCAAAT+TGG | 0.303246 | 7_2:-14943916 | Msa1050390:CDS |
| AATGTCATTTCTTCAGATTT+TGG | 0.303330 | 7_2:-14940078 | Msa1050390:CDS |
| ATATACATTTGTCTGTATTT+CGG | 0.304153 | 7_2:+14938183 | None:intergenic |
| TTACAGCGAGATACCGAATT+TGG | 0.307570 | 7_2:-14938490 | Msa1050390:CDS |
| AGATCCTTGCTTGCTATCTA+AGG | 0.317310 | 7_2:+14941295 | None:intergenic |
| GAAATCCACTTCAAGGTATA+AGG | 0.317352 | 7_2:-14941333 | Msa1050390:CDS |
| TTAGCGGGTCAAGAACTAAA+AGG | 0.333686 | 7_2:-14938660 | Msa1050390:CDS |
| CTCTCAGGTGTAACCAATAA+TGG | 0.335900 | 7_2:-14941873 | Msa1050390:intron |
| TAATTATTCCGTTAAATTCA+TGG | 0.339052 | 7_2:+14941636 | None:intergenic |
| GGTTCCCTCGAAACTATAAT+AGG | 0.348438 | 7_2:+14941422 | None:intergenic |
| CGAAGACTAGAGAAGAAGTT+TGG | 0.351848 | 7_2:-14940294 | Msa1050390:CDS |
| AAAATTACCACAGAACCTTT+TGG | 0.354325 | 7_2:-14940423 | Msa1050390:CDS |
| TCTTGAAATTTGAATTTGTT+TGG | 0.368975 | 7_2:+14941595 | None:intergenic |
| AATCTTGTAACAAAGACTTT+TGG | 0.373576 | 7_2:+14940901 | None:intergenic |
| CGAATATGGTTTCACATTTG+TGG | 0.374413 | 7_2:+14940971 | None:intergenic |
| AAGGCTCGCAACTTGTCTAT+TGG | 0.375239 | 7_2:-14941248 | Msa1050390:CDS |
| GTTGAGGATGGAACACTCTA+AGG | 0.383373 | 7_2:-14939884 | Msa1050390:CDS |
| TGGTGTCCTCAAGGGATAGA+AGG | 0.384017 | 7_2:-14941007 | Msa1050390:CDS |
| AAGCAAATTGGTTGCATCAC+TGG | 0.387194 | 7_2:-14943904 | Msa1050390:CDS |
| ATACAAGAAACAACAAAGTT+TGG | 0.394649 | 7_2:-14941027 | Msa1050390:CDS |
| AAGCAAATTTCTAGGGCTAT+TGG | 0.395905 | 7_2:-14938759 | Msa1050390:CDS |
| ATTCAATAGGTGCATTCAAT+AGG | 0.399078 | 7_2:-14944025 | None:intergenic |
| GGATCTATTCGAGGGATTGA+TGG | 0.405075 | 7_2:-14941278 | Msa1050390:CDS |
| CTCCAGGACTCGACGCAAAC+TGG | 0.412806 | 7_2:-14941113 | Msa1050390:CDS |
| CTCGAAACTATAATAGGCCT+TGG | 0.420659 | 7_2:+14941428 | None:intergenic |
| AGAAAATGTTCTCCAACAAA+TGG | 0.426374 | 7_2:-14940492 | Msa1050390:CDS |
| AATTACTTCTATGTCACCTT+GGG | 0.433189 | 7_2:+14940035 | None:intergenic |
| TCGATATCTAACACCAAATT+CGG | 0.434103 | 7_2:+14938477 | None:intergenic |
| TCTGATATATACTTATGATC+AGG | 0.434935 | 7_2:+14938927 | None:intergenic |
| CAAGGTATAAGGAGCTTCCT+AGG | 0.437342 | 7_2:-14941322 | Msa1050390:CDS |
| CAGTGCTGTAGCTAAGTTGA+TGG | 0.439520 | 7_2:-14941147 | Msa1050390:CDS |
| TGAATTGACAGTTCTGTAGA+AGG | 0.442642 | 7_2:+14940531 | None:intergenic |
| ATGACATCCCATGAATTTAA+CGG | 0.443140 | 7_2:-14941644 | Msa1050390:CDS |
| ATTCAGAATGCATCTTCTTC+AGG | 0.444082 | 7_2:-14943823 | Msa1050390:intron |
| TGCTAGAACCGACGACTCCT+TGG | 0.454201 | 7_2:-14940941 | Msa1050390:CDS |
| ATGCATTGAAATCCACTTCA+AGG | 0.455597 | 7_2:-14941340 | Msa1050390:CDS |
| CAATTGGTAATTTACTACCT+TGG | 0.455682 | 7_2:+14940598 | None:intergenic |
| AATTATTCCGTTAAATTCAT+GGG | 0.457206 | 7_2:+14941637 | None:intergenic |
| GAAAATTCTGTCTCCTAAGT+AGG | 0.461544 | 7_2:-14938379 | Msa1050390:exon |
| TTGGTGAGATGAATTCTCAT+TGG | 0.470866 | 7_2:-14940122 | Msa1050390:CDS |
| CTAAGTAGGAACTTTAGCTT+AGG | 0.474220 | 7_2:-14938365 | Msa1050390:exon |
| AGAATTTGATAAGTCTATTG+TGG | 0.474991 | 7_2:-14938551 | Msa1050390:CDS |
| GAAGGAACTTGTTGACCAAA+AGG | 0.475747 | 7_2:+14940408 | None:intergenic |
| AGTAATTCAGCTCGATCAAT+CGG | 0.482866 | 7_2:-14940019 | Msa1050390:CDS |
| TCTATTGTGGAGAGATTTGA+AGG | 0.484032 | 7_2:-14938538 | Msa1050390:CDS |
| AAATTCTGCAAGAAATCGAT+TGG | 0.489450 | 7_2:-14938989 | Msa1050390:CDS |
| TGAATCCAAAGATTGTTTGA+AGG | 0.495015 | 7_2:-14943982 | Msa1050390:five_prime_UTR |
| CTCTAGTCTTCGACTAGCTA+TGG | 0.495800 | 7_2:+14940305 | None:intergenic |
| GATCGCCACCGTTTCATCAC+AGG | 0.501681 | 7_2:-14943865 | Msa1050390:CDS |
| TCAGAAATACTCATATCATC+AGG | 0.508998 | 7_2:-14938909 | Msa1050390:CDS |
| GAATTACTTCTATGTCACCT+TGG | 0.511835 | 7_2:+14940034 | None:intergenic |
| CTAAGCTAAAGTTCCTACTT+AGG | 0.513122 | 7_2:+14938366 | None:intergenic |
| AACAAAGTTTGGTGTCCTCA+AGG | 0.513188 | 7_2:-14941016 | Msa1050390:CDS |
| GTGAGATGAATTCTCATTGG+AGG | 0.513302 | 7_2:-14940119 | Msa1050390:CDS |
| AAAAGGTTTGAAATCTATGA+AGG | 0.514019 | 7_2:-14943947 | Msa1050390:CDS |
| TTGTTACAAGATTCTTCAAA+GGG | 0.514745 | 7_2:-14940891 | Msa1050390:CDS |
| TACTTCTATGTCACCTTGGG+TGG | 0.518392 | 7_2:+14940038 | None:intergenic |
| GCAGCATCAAGAACAGATAC+AGG | 0.519318 | 7_2:+14939829 | None:intergenic |
| TTTACATCAGGTTGCCTCCA+AGG | 0.520570 | 7_2:+14940924 | None:intergenic |
| CAAGGCCTATTATAGTTTCG+AGG | 0.520944 | 7_2:-14941427 | Msa1050390:CDS |
| GACTTCGAAAGAGTATGTAA+TGG | 0.522208 | 7_2:+14941401 | None:intergenic |
| TCTTGATGCTGCATTCTACA+AGG | 0.523094 | 7_2:-14939818 | Msa1050390:CDS |
| CAATGCATAGAGAAGCTAAA+GGG | 0.523631 | 7_2:-14941523 | Msa1050390:CDS |
| CAGATTCATCATCTGACACT+AGG | 0.524133 | 7_2:-14940725 | Msa1050390:CDS |
| TTTGTTACAAGATTCTTCAA+AGG | 0.525527 | 7_2:-14940892 | Msa1050390:CDS |
| TACATTTGAAGAGTTGAGGA+TGG | 0.526661 | 7_2:-14939896 | Msa1050390:CDS |
| ACAAAGTATCTCTATTTCAC+AGG | 0.528685 | 7_2:-14940160 | Msa1050390:CDS |
| TTAGCTTAGGAGTTAGAGGA+TGG | 0.529047 | 7_2:-14938352 | Msa1050390:three_prime_UTR |
| AAGCTCCTTATACCTTGAAG+TGG | 0.529178 | 7_2:+14941328 | None:intergenic |
| GAATCCAAAGATTGTTTGAA+GGG | 0.530380 | 7_2:-14943981 | Msa1050390:five_prime_UTR |
| TATATGGCGAAATTGAGAAA+AGG | 0.530544 | 7_2:-14940827 | Msa1050390:CDS |
| GATGGGACTAGAAGCTCTCC+AGG | 0.532515 | 7_2:-14941129 | Msa1050390:CDS |
| TGCGTTGTCCTGTGATGAAA+CGG | 0.534782 | 7_2:+14943857 | None:intergenic |
| AGAATACATTTGAAGAGTTG+AGG | 0.535315 | 7_2:-14939900 | Msa1050390:CDS |
| TAATTATTCTTATTTGCTGA+AGG | 0.536384 | 7_2:+14940390 | None:intergenic |
| CTTGCCCTCGGCTTTAGTCA+CGG | 0.542798 | 7_2:-14940640 | Msa1050390:CDS |
| AGCTATACATATAGTTTGAA+AGG | 0.547322 | 7_2:-14938288 | Msa1050390:three_prime_UTR |
| TTAATCGTGGAATCCGATGA+TGG | 0.549934 | 7_2:+14940243 | None:intergenic |
| AAAACATAGTAGCCAACTTG+TGG | 0.558320 | 7_2:-14940214 | Msa1050390:CDS |
| TGATGTGAAGCAAATTTCTA+GGG | 0.560378 | 7_2:-14938766 | Msa1050390:CDS |
| CTTTCCTTAGATAGCAAGCA+AGG | 0.561661 | 7_2:-14941299 | Msa1050390:CDS |
| GACCTGGTGAATGAAGTATC+TGG | 0.562726 | 7_2:+14938862 | None:intergenic |
| AGAAGAAGTTTGGAGTTGAG+AGG | 0.568396 | 7_2:-14940284 | Msa1050390:CDS |
| AAGGCCTATTATAGTTTCGA+GGG | 0.571141 | 7_2:-14941426 | Msa1050390:CDS |
| TAGAACCGACGACTCCTTGG+AGG | 0.571927 | 7_2:-14940938 | Msa1050390:CDS |
| AGCAAGCAAGGATCTATTCG+AGG | 0.572224 | 7_2:-14941287 | Msa1050390:CDS |
| CTACCTTGGATAGAATTCAA+CGG | 0.573889 | 7_2:+14940612 | None:intergenic |
| AACAGAAGCTTGGCCACCCA+AGG | 0.574495 | 7_2:-14940051 | Msa1050390:CDS |
| TTGTCTATTGGCTTGCAAAG+AGG | 0.574817 | 7_2:-14941236 | Msa1050390:CDS |
| ACTGATATTGGAAGAGTTAG+CGG | 0.579043 | 7_2:-14938676 | Msa1050390:CDS |
| TAGCGGGTCAAGAACTAAAA+GGG | 0.583097 | 7_2:-14938659 | Msa1050390:CDS |
| CTGATATTGGAAGAGTTAGC+GGG | 0.586321 | 7_2:-14938675 | Msa1050390:CDS |
| TGCACCAACTAGTCCATCAT+CGG | 0.588433 | 7_2:-14940256 | Msa1050390:CDS |
| TCGCCATATACAGAAAGAGA+AGG | 0.593211 | 7_2:+14940840 | None:intergenic |
| GAATCCGATGATGGACTAGT+TGG | 0.594180 | 7_2:+14940252 | None:intergenic |
| ACAAAGTTTGGTGTCCTCAA+GGG | 0.594669 | 7_2:-14941015 | Msa1050390:CDS |
| CGAAATTGAGAAAAGGTTGG+CGG | 0.595113 | 7_2:-14940820 | Msa1050390:CDS |
| AAATCTCCTCAAGAAAGTAG+TGG | 0.596296 | 7_2:-14940336 | Msa1050390:CDS |
| TGAAAGCTTTGTTCATCATG+AGG | 0.597883 | 7_2:-14938577 | Msa1050390:CDS |
| CATCAACTTAGCTACAGCAC+TGG | 0.601946 | 7_2:+14941148 | None:intergenic |
| AGTGCTGTAGCTAAGTTGAT+GGG | 0.603588 | 7_2:-14941146 | Msa1050390:CDS |
| TCAATGCATAGAGAAGCTAA+AGG | 0.608861 | 7_2:-14941524 | Msa1050390:CDS |
| GGTGTCCTCAAGGGATAGAA+GGG | 0.610290 | 7_2:-14941006 | Msa1050390:CDS |
| AGGGATTGATGGAGGAAACA+AGG | 0.612570 | 7_2:-14941267 | Msa1050390:CDS |
| CTCAACCGTGACTAAAGCCG+AGG | 0.613228 | 7_2:+14940635 | None:intergenic |
| AGAAGTTACTGATGATTCTG+TGG | 0.613843 | 7_2:+14941694 | None:intergenic |
| TGGCGAAATTGAGAAAAGGT+TGG | 0.614918 | 7_2:-14940823 | Msa1050390:CDS |
| TCAAGAACAGATACAGGACT+TGG | 0.615930 | 7_2:+14939835 | None:intergenic |
| GGTTGCCTCCAAGGAGTCGT+CGG | 0.619725 | 7_2:+14940933 | None:intergenic |
| TTGCTATCTAAGGAAAGCCT+AGG | 0.621537 | 7_2:+14941305 | None:intergenic |
| TTGTTGACCAAAAGGTTCTG+TGG | 0.622073 | 7_2:+14940416 | None:intergenic |
| AAGCACTGATGATGATAGTG+AGG | 0.622134 | 7_2:-14939027 | Msa1050390:CDS |
| AACCAGATACTTCATTCACC+AGG | 0.623701 | 7_2:-14938864 | Msa1050390:CDS |
| AAGTAGACAACTCCACAAGT+TGG | 0.630781 | 7_2:+14940202 | None:intergenic |
| GAGCCGTTGAATTCTATCCA+AGG | 0.631359 | 7_2:-14940615 | Msa1050390:CDS |
| TGTCATCACAAAACCAACAA+AGG | 0.637886 | 7_2:-14940577 | Msa1050390:CDS |
| GCAAGCAAGGATCTATTCGA+GGG | 0.648421 | 7_2:-14941286 | Msa1050390:CDS |
| TAATACAATGCAGAAACCAA+AGG | 0.649649 | 7_2:-14941835 | Msa1050390:intron |
| ATCGTCCCTTCTATCCCTTG+AGG | 0.652074 | 7_2:+14941001 | None:intergenic |
| AGGACTCGACGCAAACTGGT+CGG | 0.653999 | 7_2:-14941109 | Msa1050390:CDS |
| TCTATTCGAGGGATTGATGG+AGG | 0.655912 | 7_2:-14941275 | Msa1050390:CDS |
| TGATGATAGTGAGGAAAACT+CGG | 0.671981 | 7_2:-14939018 | Msa1050390:CDS |
| TCAACCGTGACTAAAGCCGA+GGG | 0.674100 | 7_2:+14940636 | None:intergenic |
| TTTGGGTTAATGATGTGACC+TGG | 0.681371 | 7_2:+14938846 | None:intergenic |
| ATTTGGTGTTAGATATCGAG+CGG | 0.685106 | 7_2:-14938473 | Msa1050390:CDS |
| GCTTGCAAAGAGGATATGAG+AGG | 0.687570 | 7_2:-14941226 | Msa1050390:CDS |
| TGAGAGGAACTCGAGCACAA+TGG | 0.691640 | 7_2:-14941210 | Msa1050390:CDS |
| AATGCATCATAAGAGAGTCG+CGG | 0.702250 | 7_2:+14941356 | None:intergenic |
| GTTGTCCTGTGATGAAACGG+TGG | 0.730923 | 7_2:+14943860 | None:intergenic |
| TGATAGTGAGGAAAACTCGG+TGG | 0.753935 | 7_2:-14939015 | Msa1050390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTGTATTTTTTATTTTTT+TGG | - | chr7_2:14938385-14938404 | Msa1050390:CDS | 10.0% |
| !! | TTTAATAAAAGGTAATTATT+GGG | + | chr7_2:14939340-14939359 | None:intergenic | 10.0% |
| !!! | TTTTAATAAAAGGTAATTAT+TGG | + | chr7_2:14939341-14939360 | None:intergenic | 10.0% |
| !! | AAAAAATATTATGATCAATT+TGG | - | chr7_2:14939739-14939758 | Msa1050390:intron | 10.0% |
| !! | TTGAAAAATTAACATAAATT+TGG | + | chr7_2:14942668-14942687 | None:intergenic | 10.0% |
| !!! | TTTTCTTTTGATATTTTTTG+AGG | - | chr7_2:14938844-14938863 | Msa1050390:CDS | 15.0% |
| !! | TTAATAAAAGGTAATTATTG+GGG | + | chr7_2:14939339-14939358 | None:intergenic | 15.0% |
| !!! | AAACATTCTTTTTTTTTTGT+TGG | - | chr7_2:14942243-14942262 | Msa1050390:intron | 15.0% |
| !! | AAAATTAACATAAATTTGGA+TGG | + | chr7_2:14942664-14942683 | None:intergenic | 15.0% |
| !!! | GAAAGTATAAAAATTCACAA+TGG | + | chr7_2:14939082-14939101 | None:intergenic | 20.0% |
| !! | TATGTTAAAATCTACATAGA+AGG | + | chr7_2:14939118-14939137 | None:intergenic | 20.0% |
| !! | ATTATGATATTTGTTTGACA+AGG | - | chr7_2:14939148-14939167 | Msa1050390:intron | 20.0% |
| !! | TTATGATATTTGTTTGACAA+GGG | - | chr7_2:14939149-14939168 | Msa1050390:intron | 20.0% |
| !! | AAATATACGACAAATATCTA+AGG | + | chr7_2:14939214-14939233 | None:intergenic | 20.0% |
| !!! | AGATATTTGTCGTATATTTT+TGG | - | chr7_2:14939215-14939234 | Msa1050390:intron | 20.0% |
| !! | TAATAAAAGGTAATTATTGG+GGG | + | chr7_2:14939338-14939357 | None:intergenic | 20.0% |
| !! | AGTCTATAGGAAAAAAATTA+TGG | + | chr7_2:14939545-14939564 | None:intergenic | 20.0% |
| !! | TATACTAAAAAGTTAGATGA+GGG | + | chr7_2:14940151-14940170 | None:intergenic | 20.0% |
| !! | TTATACTAAAAAGTTAGATG+AGG | + | chr7_2:14940152-14940171 | None:intergenic | 20.0% |
| !! | TATAAATTCTCCTTATAACA+AGG | - | chr7_2:14940167-14940186 | Msa1050390:CDS | 20.0% |
| !!! | TATTTTATTGCCTTGTTATA+AGG | + | chr7_2:14940180-14940199 | None:intergenic | 20.0% |
| !! | TAGTTTATTTATCTTACCTT+TGG | + | chr7_2:14940352-14940371 | None:intergenic | 20.0% |
| !! | AATTATTCCGTTAAATTCAT+GGG | + | chr7_2:14940534-14940553 | None:intergenic | 20.0% |
| !! | TAATTATTCCGTTAAATTCA+TGG | + | chr7_2:14940535-14940554 | None:intergenic | 20.0% |
| !!! | TCTTGAAATTTGAATTTGTT+TGG | + | chr7_2:14940576-14940595 | None:intergenic | 20.0% |
| !!! | TAATTATTCTTATTTGCTGA+AGG | + | chr7_2:14941781-14941800 | None:intergenic | 20.0% |
| !! | AAAAAAGAATGTTTAACAGT+TGG | + | chr7_2:14942237-14942256 | None:intergenic | 20.0% |
| !!! | TTTTCAATGTTATCAAATAG+CGG | - | chr7_2:14942681-14942700 | Msa1050390:intron | 20.0% |
| !!! | TTTTCTAAATCTTCTGTTAT+AGG | - | chr7_2:14943109-14943128 | Msa1050390:intron | 20.0% |
| !! | TCTAGTTAAAAAACTGATAT+TGG | - | chr7_2:14943480-14943499 | Msa1050390:intron | 20.0% |
| !! | ATATACATTTGTCTGTATTT+CGG | + | chr7_2:14943988-14944007 | None:intergenic | 20.0% |
| !! | AAAAGGTTTGAAATCTATGA+AGG | - | chr7_2:14938221-14938240 | Msa1050390:three_prime_UTR | 25.0% |
| ! | CTAAAAATTTGCCTTAAACA+TGG | + | chr7_2:14938532-14938551 | None:intergenic | 25.0% |
| !!! | GTCTAAAACGATTGTTTTAA+TGG | - | chr7_2:14938866-14938885 | Msa1050390:CDS | 25.0% |
| ! | ATGACTCATGTTACTAATTA+TGG | + | chr7_2:14938991-14939010 | None:intergenic | 25.0% |
| ! | TAAAATCTACATAGAAGGAA+AGG | + | chr7_2:14939113-14939132 | None:intergenic | 25.0% |
| ! | ATAAAAAGGTTCTCATATGA+TGG | - | chr7_2:14939246-14939265 | Msa1050390:intron | 25.0% |
| !! | ATATGATGGAGAAATTTCTT+AGG | - | chr7_2:14939260-14939279 | Msa1050390:intron | 25.0% |
| !!! | TTCCTATAGACTTTTGTTTT+TGG | - | chr7_2:14939553-14939572 | Msa1050390:intron | 25.0% |
| ! | AACCAAAAACAAAAGTCTAT+AGG | + | chr7_2:14939558-14939577 | None:intergenic | 25.0% |
| ! | TCATTGATAAGAGTTTAACT+TGG | - | chr7_2:14939617-14939636 | Msa1050390:intron | 25.0% |
| !!! | TTGGCTTACAAAAGTTTTAT+AGG | - | chr7_2:14939758-14939777 | Msa1050390:intron | 25.0% |
| ! | ATAGATTATAGAATCTACTC+AGG | + | chr7_2:14939790-14939809 | None:intergenic | 25.0% |
| ! | AATAAGTCAACTTTGTATCT+TGG | + | chr7_2:14939823-14939842 | None:intergenic | 25.0% |
| !! | AGATACAAAGTTGACTTATT+TGG | - | chr7_2:14939823-14939842 | Msa1050390:CDS | 25.0% |
| ! | TAGATATGAATCATATCTTG+AGG | + | chr7_2:14939872-14939891 | None:intergenic | 25.0% |
| !! | ATAATTCGACGTTTTTATAG+AGG | - | chr7_2:14939964-14939983 | Msa1050390:intron | 25.0% |
| !! | TAATTCGACGTTTTTATAGA+GGG | - | chr7_2:14939965-14939984 | Msa1050390:intron | 25.0% |
| ! | GATATTTGAACAACACAAAA+AGG | - | chr7_2:14939990-14940009 | Msa1050390:intron | 25.0% |
| ! | TGTATTCTCTAACTCAAAAT+TGG | - | chr7_2:14940207-14940226 | Msa1050390:CDS | 25.0% |
| ! | ATTAACCAAACAAGAAAAAG+AGG | - | chr7_2:14940682-14940701 | Msa1050390:CDS | 25.0% |
| ! | TTAACCAAACAAGAAAAAGA+GGG | - | chr7_2:14940683-14940702 | Msa1050390:CDS | 25.0% |
| !!! | TATGATCTCATTTTTATCTG+TGG | + | chr7_2:14941098-14941117 | None:intergenic | 25.0% |
| ! | ATACAAGAAACAACAAAGTT+TGG | - | chr7_2:14941141-14941160 | Msa1050390:CDS | 25.0% |
| !! | AATCTTGTAACAAAGACTTT+TGG | + | chr7_2:14941270-14941289 | None:intergenic | 25.0% |
| ! | TTTGTTACAAGATTCTTCAA+AGG | - | chr7_2:14941276-14941295 | Msa1050390:CDS | 25.0% |
| ! | TTGTTACAAGATTCTTCAAA+GGG | - | chr7_2:14941277-14941296 | Msa1050390:CDS | 25.0% |
| !!! | AATGTCATTTCTTCAGATTT+TGG | - | chr7_2:14942090-14942109 | Msa1050390:intron | 25.0% |
| ! | TCGAACGTTTCAAAAAATTT+AGG | - | chr7_2:14942402-14942421 | Msa1050390:intron | 25.0% |
| ! | AATTGTGACAATCTAATTCA+TGG | - | chr7_2:14942441-14942460 | Msa1050390:intron | 25.0% |
| ! | AACAAACTTAGGATTCATAT+TGG | + | chr7_2:14942527-14942546 | None:intergenic | 25.0% |
| ! | CAAATAGATACAACAAACTT+AGG | + | chr7_2:14942538-14942557 | None:intergenic | 25.0% |
| !!! | CTAAGTTTGTTGTATCTATT+TGG | - | chr7_2:14942536-14942555 | Msa1050390:intron | 25.0% |
| ! | TGATTAACTATGAAGAATCT+TGG | - | chr7_2:14942602-14942621 | Msa1050390:intron | 25.0% |
| ! | TAGAATCTTGAACTATTTGA+AGG | - | chr7_2:14942823-14942842 | Msa1050390:intron | 25.0% |
| !!! | TGATATATCGACTTATAATC+TGG | - | chr7_2:14942856-14942875 | Msa1050390:intron | 25.0% |
| ! | ATAAAGATTCATATCGTGAT+TGG | + | chr7_2:14942979-14942998 | None:intergenic | 25.0% |
| ! | TTAATGATTCCTTTGATCAA+TGG | + | chr7_2:14943025-14943044 | None:intergenic | 25.0% |
| ! | TAAAGACGTAAAATGTACAT+TGG | + | chr7_2:14943050-14943069 | None:intergenic | 25.0% |
| ! | TTACAAAAATCAACGTCAAA+AGG | - | chr7_2:14943067-14943086 | Msa1050390:intron | 25.0% |
| ! | TCTGATATATACTTATGATC+AGG | + | chr7_2:14943244-14943263 | None:intergenic | 25.0% |
| ! | ATGATTTACAACCTCAAAAT+AGG | - | chr7_2:14943566-14943585 | Msa1050390:intron | 25.0% |
| ! | AGAATTTGATAAGTCTATTG+TGG | - | chr7_2:14943617-14943636 | Msa1050390:intron | 25.0% |
| !! | GATGAACTAGTAAACAATTT+TGG | - | chr7_2:14943754-14943773 | Msa1050390:intron | 25.0% |
| ! | AGCTATACATATAGTTTGAA+AGG | - | chr7_2:14943880-14943899 | Msa1050390:CDS | 25.0% |
| !!! | TATCAGTATTGACTTTTACA+TGG | - | chr7_2:14944005-14944024 | Msa1050390:five_prime_UTR | 25.0% |
| !!! | ATCAGTATTGACTTTTACAT+GGG | - | chr7_2:14944006-14944025 | Msa1050390:five_prime_UTR | 25.0% |
| TGAATCCAAAGATTGTTTGA+AGG | - | chr7_2:14938186-14938205 | Msa1050390:three_prime_UTR | 30.0% | |
| GAATCCAAAGATTGTTTGAA+GGG | - | chr7_2:14938187-14938206 | Msa1050390:three_prime_UTR | 30.0% | |
| ! | TTTTCCCTTCAAACAATCTT+TGG | + | chr7_2:14938194-14938213 | None:intergenic | 30.0% |
| GAAGGGAAAATGTCAAAAAA+AGG | - | chr7_2:14938204-14938223 | Msa1050390:three_prime_UTR | 30.0% | |
| AGATGCATTCTGAATGTATT+TGG | + | chr7_2:14938340-14938359 | None:intergenic | 30.0% | |
| AACTCGATTGAAAATGCAAT+TGG | - | chr7_2:14938434-14938453 | Msa1050390:CDS | 30.0% | |
| TCAATTATATCGAGGGTTTA+TGG | - | chr7_2:14938929-14938948 | Msa1050390:CDS | 30.0% | |
| !! | TGTTTGACAAGGGTATTAAA+AGG | - | chr7_2:14939159-14939178 | Msa1050390:intron | 30.0% |
| !! | CAAGGGTATTAAAAGGAAAA+AGG | - | chr7_2:14939166-14939185 | Msa1050390:intron | 30.0% |
| !!! | ATTTGTCGTATATTTTTGGC+TGG | - | chr7_2:14939219-14939238 | Msa1050390:intron | 30.0% |
| !!! | TTTTGGCTGGCTTAATAAAA+AGG | - | chr7_2:14939232-14939251 | Msa1050390:intron | 30.0% |
| !!! | TTTTGTTTTTGGTTCTGAAG+AGG | - | chr7_2:14939564-14939583 | Msa1050390:intron | 30.0% |
| !! | GATAAGAGTTTAACTTGGTA+AGG | - | chr7_2:14939622-14939641 | Msa1050390:intron | 30.0% |
| TACATGGTTCAAATTCCATT+TGG | - | chr7_2:14939651-14939670 | Msa1050390:intron | 30.0% | |
| GATTCTATAATCTATGCAAC+TGG | - | chr7_2:14939795-14939814 | Msa1050390:CDS | 30.0% | |
| CTATCACTTAAGAGTTATGA+AGG | - | chr7_2:14939934-14939953 | Msa1050390:intron | 30.0% | |
| TAATACAATGCAGAAACCAA+AGG | - | chr7_2:14940333-14940352 | Msa1050390:CDS | 30.0% | |
| ATGACATCCCATGAATTTAA+CGG | - | chr7_2:14940524-14940543 | Msa1050390:CDS | 30.0% | |
| ! | TCAAGTGATACTTTTGAATG+TGG | + | chr7_2:14940602-14940621 | None:intergenic | 30.0% |
| !!! | AAAGACTTTTGGTTTACATC+AGG | + | chr7_2:14941259-14941278 | None:intergenic | 30.0% |
| TATATGGCGAAATTGAGAAA+AGG | - | chr7_2:14941341-14941360 | Msa1050390:CDS | 30.0% | |
| !! | AAGTCTTTTTGTTGTCTTCT+CGG | + | chr7_2:14941511-14941530 | None:intergenic | 30.0% |
| ! | CAATTGGTAATTTACTACCT+TGG | + | chr7_2:14941573-14941592 | None:intergenic | 30.0% |
| TTCTGTAGAAGGATGATTAT+TGG | + | chr7_2:14941629-14941648 | None:intergenic | 30.0% | |
| AGAAAATGTTCTCCAACAAA+TGG | - | chr7_2:14941676-14941695 | Msa1050390:CDS | 30.0% | |
| CAAATCAAACTTCCATTTGT+TGG | + | chr7_2:14941691-14941710 | None:intergenic | 30.0% | |
| ATTTGCAAGCAAAAAGCTAA+AGG | - | chr7_2:14941706-14941725 | Msa1050390:CDS | 30.0% | |
| ! | AAGCAAAAAGCTAAAGGTAT+CGG | - | chr7_2:14941712-14941731 | Msa1050390:CDS | 30.0% |
| ! | AAAATTACCACAGAACCTTT+TGG | - | chr7_2:14941745-14941764 | Msa1050390:intron | 30.0% |
| ! | ATGTTTTCTTCTGTTAATCG+TGG | + | chr7_2:14941941-14941960 | None:intergenic | 30.0% |
| ! | ACAAAGTATCTCTATTTCAC+AGG | - | chr7_2:14942008-14942027 | Msa1050390:intron | 30.0% |
| ! | CAGGATAGAGATGAATATTT+TGG | - | chr7_2:14942027-14942046 | Msa1050390:intron | 30.0% |
| AATTACTTCTATGTCACCTT+GGG | + | chr7_2:14942136-14942155 | None:intergenic | 30.0% | |
| GAAATCTAACTAACAATGCA+AGG | + | chr7_2:14942205-14942224 | None:intergenic | 30.0% | |
| AGAATACATTTGAAGAGTTG+AGG | - | chr7_2:14942268-14942287 | Msa1050390:intron | 30.0% | |
| CTAATCAATCACTACCTAAA+CGG | - | chr7_2:14942631-14942650 | Msa1050390:intron | 30.0% | |
| ! | TCTTTTCGCAATCAATAACA+TGG | - | chr7_2:14942753-14942772 | Msa1050390:intron | 30.0% |
| AAATTCTGCAAGAAATCGAT+TGG | - | chr7_2:14943179-14943198 | Msa1050390:intron | 30.0% | |
| TCAGAAATACTCATATCATC+AGG | - | chr7_2:14943259-14943278 | Msa1050390:intron | 30.0% | |
| ATGATGTGAAGCAAATTTCT+AGG | - | chr7_2:14943401-14943420 | Msa1050390:intron | 30.0% | |
| TGATGTGAAGCAAATTTCTA+GGG | - | chr7_2:14943402-14943421 | Msa1050390:intron | 30.0% | |
| ! | AAGCTTTCATTCCTATTTTG+AGG | + | chr7_2:14943580-14943599 | None:intergenic | 30.0% |
| TCGATATCTAACACCAAATT+CGG | + | chr7_2:14943694-14943713 | None:intergenic | 30.0% | |
| ! | GAACTAGTAAACAATTTTGG+TGG | - | chr7_2:14943757-14943776 | Msa1050390:intron | 30.0% |
| CAAGAATTGCAGAAGCAAAT+TGG | - | chr7_2:14938252-14938271 | Msa1050390:three_prime_UTR | 35.0% | |
| ATTCAGAATGCATCTTCTTC+AGG | - | chr7_2:14938345-14938364 | Msa1050390:three_prime_UTR | 35.0% | |
| ! | CGATGTTTGGTAACAAAGTT+CGG | - | chr7_2:14938466-14938485 | Msa1050390:CDS | 35.0% |
| CCTTAAACATGGATATGTGT+TGG | + | chr7_2:14938521-14938540 | None:intergenic | 35.0% | |
| CCAACACATATCCATGTTTA+AGG | - | chr7_2:14938518-14938537 | Msa1050390:CDS | 35.0% | |
| ACCGTCTTTCAATTATATCG+AGG | - | chr7_2:14938921-14938940 | Msa1050390:CDS | 35.0% | |
| CCCTCGATATAATTGAAAGA+CGG | + | chr7_2:14938925-14938944 | None:intergenic | 35.0% | |
| CCGTCTTTCAATTATATCGA+GGG | - | chr7_2:14938922-14938941 | Msa1050390:CDS | 35.0% | |
| GGTATTAAAAGGAAAAAGGC+TGG | - | chr7_2:14939170-14939189 | Msa1050390:intron | 35.0% | |
| ! | AGAACGTACGCTAGAAATTT+TGG | - | chr7_2:14939305-14939324 | Msa1050390:intron | 35.0% |
| TAACAGACTAGTATGAAGAG+TGG | + | chr7_2:14939386-14939405 | None:intergenic | 35.0% | |
| CTTGGTAAGGTCAAATTACA+TGG | - | chr7_2:14939635-14939654 | Msa1050390:intron | 35.0% | |
| CTAAGACTTGAATGACCAAA+TGG | + | chr7_2:14939669-14939688 | None:intergenic | 35.0% | |
| ! | CAAAATTTTGTTCCTCTCTC+AGG | - | chr7_2:14940280-14940299 | Msa1050390:CDS | 35.0% |
| AAGCTCTTTGTTGCCATTAT+TGG | + | chr7_2:14940311-14940330 | None:intergenic | 35.0% | |
| TAACATGTGACTATGAATGC+AGG | - | chr7_2:14940412-14940431 | Msa1050390:CDS | 35.0% | |
| AGAAGTTACTGATGATTCTG+TGG | + | chr7_2:14940477-14940496 | None:intergenic | 35.0% | |
| TCAATGCATAGAGAAGCTAA+AGG | - | chr7_2:14940644-14940663 | Msa1050390:CDS | 35.0% | |
| CAATGCATAGAGAAGCTAAA+GGG | - | chr7_2:14940645-14940664 | Msa1050390:CDS | 35.0% | |
| ! | ATGACCCTCTTTTTCTTGTT+TGG | + | chr7_2:14940690-14940709 | None:intergenic | 35.0% |
| AAACAAGAAAAAGAGGGTCA+TGG | - | chr7_2:14940689-14940708 | Msa1050390:CDS | 35.0% | |
| AAGGCCTATTATAGTTTCGA+GGG | - | chr7_2:14940742-14940761 | Msa1050390:CDS | 35.0% | |
| ! | GACTTCGAAAGAGTATGTAA+TGG | + | chr7_2:14940770-14940789 | None:intergenic | 35.0% |
| ! | GAAGTCGAAAAAAGCACATT+GGG | - | chr7_2:14940784-14940803 | Msa1050390:CDS | 35.0% |
| ATGCATTGAAATCCACTTCA+AGG | - | chr7_2:14940828-14940847 | Msa1050390:CDS | 35.0% | |
| GAAATCCACTTCAAGGTATA+AGG | - | chr7_2:14940835-14940854 | Msa1050390:CDS | 35.0% | |
| ! | GACGATCTTTTTGATGTTTC+TGG | + | chr7_2:14941001-14941020 | None:intergenic | 35.0% |
| CGAATATGGTTTCACATTTG+TGG | + | chr7_2:14941200-14941219 | None:intergenic | 35.0% | |
| TCTAGCATAAATCGCGAATA+TGG | + | chr7_2:14941214-14941233 | None:intergenic | 35.0% | |
| AAGCCTTCTCTTTCTGTATA+TGG | - | chr7_2:14941325-14941344 | Msa1050390:CDS | 35.0% | |
| CTACCTTGGATAGAATTCAA+CGG | + | chr7_2:14941559-14941578 | None:intergenic | 35.0% | |
| !!! | GTTGGTTTTGTGATGACAAT+TGG | + | chr7_2:14941589-14941608 | None:intergenic | 35.0% |
| TGTCATCACAAAACCAACAA+AGG | - | chr7_2:14941591-14941610 | Msa1050390:CDS | 35.0% | |
| !!! | GCTTTTCTAGTTACCTTTGT+TGG | + | chr7_2:14941607-14941626 | None:intergenic | 35.0% |
| TGAATTGACAGTTCTGTAGA+AGG | + | chr7_2:14941640-14941659 | None:intergenic | 35.0% | |
| AAATCTCCTCAAGAAAGTAG+TGG | - | chr7_2:14941832-14941851 | Msa1050390:intron | 35.0% | |
| ! | TTTTGTCCACTACTTTCTTG+AGG | + | chr7_2:14941841-14941860 | None:intergenic | 35.0% |
| AAAACATAGTAGCCAACTTG+TGG | - | chr7_2:14941954-14941973 | Msa1050390:intron | 35.0% | |
| TTGGTGAGATGAATTCTCAT+TGG | - | chr7_2:14942046-14942065 | Msa1050390:intron | 35.0% | |
| GAATTACTTCTATGTCACCT+TGG | + | chr7_2:14942137-14942156 | None:intergenic | 35.0% | |
| AGTAATTCAGCTCGATCAAT+CGG | - | chr7_2:14942149-14942168 | Msa1050390:intron | 35.0% | |
| TACATTTGAAGAGTTGAGGA+TGG | - | chr7_2:14942272-14942291 | Msa1050390:intron | 35.0% | |
| ATGTAAGTCGTATCTCGATT+TGG | - | chr7_2:14942484-14942503 | Msa1050390:intron | 35.0% | |
| CATGAATCTCTTCTTGAATG+TGG | - | chr7_2:14942561-14942580 | Msa1050390:intron | 35.0% | |
| !!! | ACATTTCATGGCGGATATTT+TGG | - | chr7_2:14942709-14942728 | Msa1050390:intron | 35.0% |
| !!! | GCGGATATTTTGGCTTATAA+TGG | - | chr7_2:14942719-14942738 | Msa1050390:intron | 35.0% |
| ! | TGATCAATGGATTCAGATCA+TGG | + | chr7_2:14943012-14943031 | None:intergenic | 35.0% |
| GATCTGAATCCATTGATCAA+AGG | - | chr7_2:14943013-14943032 | Msa1050390:intron | 35.0% | |
| ! | CGAGTGCAGAGAATAATTTT+GGG | + | chr7_2:14943342-14943361 | None:intergenic | 35.0% |
| ! | TCGAGTGCAGAGAATAATTT+TGG | + | chr7_2:14943343-14943362 | None:intergenic | 35.0% |
| !! | AAGCAAATTTCTAGGGCTAT+TGG | - | chr7_2:14943409-14943428 | Msa1050390:intron | 35.0% |
| ! | AGCTTTCTTTGCATTTTCTC+AGG | + | chr7_2:14943436-14943455 | None:intergenic | 35.0% |
| ACTGATATTGGAAGAGTTAG+CGG | - | chr7_2:14943492-14943511 | Msa1050390:intron | 35.0% | |
| !! | TGAAAGCTTTGTTCATCATG+AGG | - | chr7_2:14943591-14943610 | Msa1050390:intron | 35.0% |
| TCTATTGTGGAGAGATTTGA+AGG | - | chr7_2:14943630-14943649 | Msa1050390:intron | 35.0% | |
| !! | ATTTGGTGTTAGATATCGAG+CGG | - | chr7_2:14943695-14943714 | Msa1050390:intron | 35.0% |
| GAAAATTCTGTCTCCTAAGT+AGG | - | chr7_2:14943789-14943808 | Msa1050390:intron | 35.0% | |
| CTAAGCTAAAGTTCCTACTT+AGG | + | chr7_2:14943805-14943824 | None:intergenic | 35.0% | |
| ! | CTAAGTAGGAACTTTAGCTT+AGG | - | chr7_2:14943803-14943822 | Msa1050390:intron | 35.0% |
| ! | AACTTTAGCTTAGGAGTTAG+AGG | - | chr7_2:14943812-14943831 | Msa1050390:intron | 35.0% |
| AAGCAAATTGGTTGCATCAC+TGG | - | chr7_2:14938264-14938283 | Msa1050390:three_prime_UTR | 40.0% | |
| TTGGCGAAATACACGATGTT+TGG | - | chr7_2:14938453-14938472 | Msa1050390:CDS | 40.0% | |
| ACAATTGTGTTTACGTCTGC+AGG | - | chr7_2:14938489-14938508 | Msa1050390:CDS | 40.0% | |
| CAATTGTGTTTACGTCTGCA+GGG | - | chr7_2:14938490-14938509 | Msa1050390:CDS | 40.0% | |
| AACATGGATATGTGTTGGAC+CGG | + | chr7_2:14938516-14938535 | None:intergenic | 40.0% | |
| AGGAAAAAGGCTGGATGTAA+AGG | - | chr7_2:14939179-14939198 | Msa1050390:intron | 40.0% | |
| ! | TTATTGGTTACACCTGAGAG+AGG | + | chr7_2:14940295-14940314 | None:intergenic | 40.0% |
| CTCTCAGGTGTAACCAATAA+TGG | - | chr7_2:14940295-14940314 | Msa1050390:CDS | 40.0% | |
| CTCGAAACTATAATAGGCCT+TGG | + | chr7_2:14940743-14940762 | None:intergenic | 40.0% | |
| CAAGGCCTATTATAGTTTCG+AGG | - | chr7_2:14940741-14940760 | Msa1050390:CDS | 40.0% | |
| GGTTCCCTCGAAACTATAAT+AGG | + | chr7_2:14940749-14940768 | None:intergenic | 40.0% | |
| ! | CGAAGTCGAAAAAAGCACAT+TGG | - | chr7_2:14940783-14940802 | Msa1050390:CDS | 40.0% |
| AATGCATCATAAGAGAGTCG+CGG | + | chr7_2:14940815-14940834 | None:intergenic | 40.0% | |
| AAGCTCCTTATACCTTGAAG+TGG | + | chr7_2:14940843-14940862 | None:intergenic | 40.0% | |
| TTGCTATCTAAGGAAAGCCT+AGG | + | chr7_2:14940866-14940885 | None:intergenic | 40.0% | |
| CTTTCCTTAGATAGCAAGCA+AGG | - | chr7_2:14940869-14940888 | Msa1050390:CDS | 40.0% | |
| !! | AGATCCTTGCTTGCTATCTA+AGG | + | chr7_2:14940876-14940895 | None:intergenic | 40.0% |
| !! | TTGTCTATTGGCTTGCAAAG+AGG | - | chr7_2:14940932-14940951 | Msa1050390:CDS | 40.0% |
| !! | AGTGCTGTAGCTAAGTTGAT+GGG | - | chr7_2:14941022-14941041 | Msa1050390:CDS | 40.0% |
| !! | AACAAAGTTTGGTGTCCTCA+AGG | - | chr7_2:14941152-14941171 | Msa1050390:CDS | 40.0% |
| !! | ACAAAGTTTGGTGTCCTCAA+GGG | - | chr7_2:14941153-14941172 | Msa1050390:CDS | 40.0% |
| TCGCCATATACAGAAAGAGA+AGG | + | chr7_2:14941331-14941350 | None:intergenic | 40.0% | |
| TGGCGAAATTGAGAAAAGGT+TGG | - | chr7_2:14941345-14941364 | Msa1050390:CDS | 40.0% | |
| CGAAATTGAGAAAAGGTTGG+CGG | - | chr7_2:14941348-14941367 | Msa1050390:CDS | 40.0% | |
| GAACTCGAGTTCAAAAAGTC+CGG | - | chr7_2:14941370-14941389 | Msa1050390:CDS | 40.0% | |
| AAGTGCTCTTAGATCCTTTC+CGG | + | chr7_2:14941392-14941411 | None:intergenic | 40.0% | |
| CAGATTCATCATCTGACACT+AGG | - | chr7_2:14941443-14941462 | Msa1050390:CDS | 40.0% | |
| CTCGGACTTTGAACTTTAGA+AGG | + | chr7_2:14941493-14941512 | None:intergenic | 40.0% | |
| ACAACAAAAAGACTTGCCCT+CGG | - | chr7_2:14941516-14941535 | Msa1050390:CDS | 40.0% | |
| TTGTTGACCAAAAGGTTCTG+TGG | + | chr7_2:14941755-14941774 | None:intergenic | 40.0% | |
| !! | GAAGGAACTTGTTGACCAAA+AGG | + | chr7_2:14941763-14941782 | None:intergenic | 40.0% |
| CGAAGACTAGAGAAGAAGTT+TGG | - | chr7_2:14941874-14941893 | Msa1050390:intron | 40.0% | |
| ! | AGAAGAAGTTTGGAGTTGAG+AGG | - | chr7_2:14941884-14941903 | Msa1050390:intron | 40.0% |
| TTAATCGTGGAATCCGATGA+TGG | + | chr7_2:14941928-14941947 | None:intergenic | 40.0% | |
| AAGTAGACAACTCCACAAGT+TGG | + | chr7_2:14941969-14941988 | None:intergenic | 40.0% | |
| GTGAGATGAATTCTCATTGG+AGG | - | chr7_2:14942049-14942068 | Msa1050390:intron | 40.0% | |
| TCAAGAACAGATACAGGACT+TGG | + | chr7_2:14942336-14942355 | None:intergenic | 40.0% | |
| TCTTGATGCTGCATTCTACA+AGG | - | chr7_2:14942350-14942369 | Msa1050390:intron | 40.0% | |
| ! | GATTTCGTTTTCACTGGAGA+TGG | + | chr7_2:14942384-14942403 | None:intergenic | 40.0% |
| ! | ACGTTCGATTTCGTTTTCAC+TGG | + | chr7_2:14942390-14942409 | None:intergenic | 40.0% |
| ATATCCGCCATGAAATGTCA+AGG | + | chr7_2:14942707-14942726 | None:intergenic | 40.0% | |
| AACCAGATACTTCATTCACC+AGG | - | chr7_2:14943304-14943323 | Msa1050390:intron | 40.0% | |
| ! | TTTGGGTTAATGATGTGACC+TGG | + | chr7_2:14943325-14943344 | None:intergenic | 40.0% |
| CTGATATTGGAAGAGTTAGC+GGG | - | chr7_2:14943493-14943512 | Msa1050390:intron | 40.0% | |
| ! | TTAGCGGGTCAAGAACTAAA+AGG | - | chr7_2:14943508-14943527 | Msa1050390:intron | 40.0% |
| ! | TAGCGGGTCAAGAACTAAAA+GGG | - | chr7_2:14943509-14943528 | Msa1050390:intron | 40.0% |
| TGAAGGATCGCAACACAATT+TGG | - | chr7_2:14943647-14943666 | Msa1050390:intron | 40.0% | |
| TTACAGCGAGATACCGAATT+TGG | - | chr7_2:14943678-14943697 | Msa1050390:intron | 40.0% | |
| !! | ACAATTTTGGTGGTCATTGC+AGG | - | chr7_2:14943767-14943786 | Msa1050390:intron | 40.0% |
| TTAGCTTAGGAGTTAGAGGA+TGG | - | chr7_2:14943816-14943835 | Msa1050390:intron | 40.0% | |
| TGCGTTGTCCTGTGATGAAA+CGG | + | chr7_2:14938314-14938333 | None:intergenic | 45.0% | |
| CAAGGTATAAGGAGCTTCCT+AGG | - | chr7_2:14940846-14940865 | Msa1050390:CDS | 45.0% | |
| AGCAAGCAAGGATCTATTCG+AGG | - | chr7_2:14940881-14940900 | Msa1050390:CDS | 45.0% | |
| GCAAGCAAGGATCTATTCGA+GGG | - | chr7_2:14940882-14940901 | Msa1050390:CDS | 45.0% | |
| GGATCTATTCGAGGGATTGA+TGG | - | chr7_2:14940890-14940909 | Msa1050390:CDS | 45.0% | |
| TCTATTCGAGGGATTGATGG+AGG | - | chr7_2:14940893-14940912 | Msa1050390:CDS | 45.0% | |
| AGGGATTGATGGAGGAAACA+AGG | - | chr7_2:14940901-14940920 | Msa1050390:CDS | 45.0% | |
| AAGGCTCGCAACTTGTCTAT+TGG | - | chr7_2:14940920-14940939 | Msa1050390:CDS | 45.0% | |
| GCTTGCAAAGAGGATATGAG+AGG | - | chr7_2:14940942-14940961 | Msa1050390:CDS | 45.0% | |
| CATCAACTTAGCTACAGCAC+TGG | + | chr7_2:14941023-14941042 | None:intergenic | 45.0% | |
| ! | CAGTGCTGTAGCTAAGTTGA+TGG | - | chr7_2:14941021-14941040 | Msa1050390:CDS | 45.0% |
| ! | TTTACATCAGGTTGCCTCCA+AGG | + | chr7_2:14941247-14941266 | None:intergenic | 45.0% |
| CGAGTTCAAAAAGTCCGGAA+AGG | - | chr7_2:14941375-14941394 | Msa1050390:CDS | 45.0% | |
| GAGCCGTTGAATTCTATCCA+AGG | - | chr7_2:14941553-14941572 | Msa1050390:CDS | 45.0% | |
| ! | CTCTAGTCTTCGACTAGCTA+TGG | + | chr7_2:14941866-14941885 | None:intergenic | 45.0% |
| TGCACCAACTAGTCCATCAT+CGG | - | chr7_2:14941912-14941931 | Msa1050390:intron | 45.0% | |
| !! | GAATCCGATGATGGACTAGT+TGG | + | chr7_2:14941919-14941938 | None:intergenic | 45.0% |
| ! | TTTTGGCAGCAACAGAAGCT+TGG | - | chr7_2:14942107-14942126 | Msa1050390:intron | 45.0% |
| TACTTCTATGTCACCTTGGG+TGG | + | chr7_2:14942133-14942152 | None:intergenic | 45.0% | |
| GTTGAGGATGGAACACTCTA+AGG | - | chr7_2:14942284-14942303 | Msa1050390:intron | 45.0% | |
| GCAGCATCAAGAACAGATAC+AGG | + | chr7_2:14942342-14942361 | None:intergenic | 45.0% | |
| ! | TTCGTTTTCACTGGAGATGG+CGG | + | chr7_2:14942381-14942400 | None:intergenic | 45.0% |
| ATAGCGGCCTTGACATTTCA+TGG | - | chr7_2:14942697-14942716 | Msa1050390:intron | 45.0% | |
| ! | TGATAGTGAGGAAAACTCGG+TGG | - | chr7_2:14943153-14943172 | Msa1050390:intron | 45.0% |
| ! | GACCTGGTGAATGAAGTATC+TGG | + | chr7_2:14943309-14943328 | None:intergenic | 45.0% |
| !!! | TTTTTTTGTTTTTTAATAAA+AGG | + | chr7_2:14939351-14939370 | None:intergenic | 5.0% |
| GTTGTCCTGTGATGAAACGG+TGG | + | chr7_2:14938311-14938330 | None:intergenic | 50.0% | |
| AAGACGGTCGAAGTTGCTCA+AGG | + | chr7_2:14938909-14938928 | None:intergenic | 50.0% | |
| TGAGAGGAACTCGAGCACAA+TGG | - | chr7_2:14940958-14940977 | Msa1050390:CDS | 50.0% | |
| TGGTGTCCTCAAGGGATAGA+AGG | - | chr7_2:14941161-14941180 | Msa1050390:CDS | 50.0% | |
| GGTGTCCTCAAGGGATAGAA+GGG | - | chr7_2:14941162-14941181 | Msa1050390:CDS | 50.0% | |
| ATCGTCCCTTCTATCCCTTG+AGG | + | chr7_2:14941170-14941189 | None:intergenic | 50.0% | |
| TCAACCGTGACTAAAGCCGA+GGG | + | chr7_2:14941535-14941554 | None:intergenic | 50.0% | |
| TGGATGGCTACACTCCGTTT+AGG | + | chr7_2:14942648-14942667 | None:intergenic | 50.0% | |
| GATCGCCACCGTTTCATCAC+AGG | - | chr7_2:14938303-14938322 | Msa1050390:three_prime_UTR | 55.0% | |
| TGTGTTTACGTCTGCAGGGC+CGG | - | chr7_2:14938494-14938513 | Msa1050390:CDS | 55.0% | |
| CGGTCGAAGTTGCTCAAGGT+CGG | + | chr7_2:14938905-14938924 | None:intergenic | 55.0% | |
| ACCAACGCGTAGACTCTCCA+AGG | - | chr7_2:14940723-14940742 | Msa1050390:CDS | 55.0% | |
| GATGGGACTAGAAGCTCTCC+AGG | - | chr7_2:14941039-14941058 | Msa1050390:CDS | 55.0% | |
| AGGACTCGACGCAAACTGGT+CGG | - | chr7_2:14941059-14941078 | Msa1050390:CDS | 55.0% | |
| TGCTAGAACCGACGACTCCT+TGG | - | chr7_2:14941227-14941246 | Msa1050390:CDS | 55.0% | |
| TAGAACCGACGACTCCTTGG+AGG | - | chr7_2:14941230-14941249 | Msa1050390:CDS | 55.0% | |
| ! | CTTGCCCTCGGCTTTAGTCA+CGG | - | chr7_2:14941528-14941547 | Msa1050390:CDS | 55.0% |
| CTCAACCGTGACTAAAGCCG+AGG | + | chr7_2:14941536-14941555 | None:intergenic | 55.0% | |
| AACAGAAGCTTGGCCACCCA+AGG | - | chr7_2:14942117-14942136 | Msa1050390:intron | 55.0% | |
| GCGGCCTTGACATTTCATGG+CGG | - | chr7_2:14942700-14942719 | Msa1050390:intron | 55.0% | |
| GCCTTGGAGAGTCTACGCGT+TGG | + | chr7_2:14940727-14940746 | None:intergenic | 60.0% | |
| CTCCAGGACTCGACGCAAAC+TGG | - | chr7_2:14941055-14941074 | Msa1050390:CDS | 60.0% | |
| GACCAGTTTGCGTCGAGTCC+TGG | + | chr7_2:14941060-14941079 | None:intergenic | 60.0% | |
| GGTTGCCTCCAAGGAGTCGT+CGG | + | chr7_2:14941238-14941257 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 14938153 | 14944037 | 14938153 | ID=Msa1050390;Name=Msa1050390 |
| chr7_2 | mRNA | 14938153 | 14944037 | 14938153 | ID=Msa1050390-mRNA-1;Parent=Msa1050390;Name=Msa1050390-mRNA-1;_AED=0.03;_eAED=0.03;_QI=60|1|0.8|1|1|1|5|227|931 |
| chr7_2 | exon | 14938153 | 14939059 | 14938153 | ID=Msa1050390-mRNA-1:exon:3583;Parent=Msa1050390-mRNA-1 |
| chr7_2 | exon | 14939767 | 14939920 | 14939767 | ID=Msa1050390-mRNA-1:exon:3582;Parent=Msa1050390-mRNA-1 |
| chr7_2 | exon | 14940002 | 14941756 | 14940002 | ID=Msa1050390-mRNA-1:exon:3581;Parent=Msa1050390-mRNA-1 |
| chr7_2 | exon | 14941836 | 14941888 | 14941836 | ID=Msa1050390-mRNA-1:exon:3580;Parent=Msa1050390-mRNA-1 |
| chr7_2 | exon | 14943824 | 14944037 | 14943824 | ID=Msa1050390-mRNA-1:exon:3579;Parent=Msa1050390-mRNA-1 |
| chr7_2 | five_prime_UTR | 14943978 | 14944037 | 14943978 | ID=Msa1050390-mRNA-1:five_prime_utr;Parent=Msa1050390-mRNA-1 |
| chr7_2 | CDS | 14943824 | 14943977 | 14943824 | ID=Msa1050390-mRNA-1:cds;Parent=Msa1050390-mRNA-1 |
| chr7_2 | CDS | 14941836 | 14941888 | 14941836 | ID=Msa1050390-mRNA-1:cds;Parent=Msa1050390-mRNA-1 |
| chr7_2 | CDS | 14940002 | 14941756 | 14940002 | ID=Msa1050390-mRNA-1:cds;Parent=Msa1050390-mRNA-1 |
| chr7_2 | CDS | 14939767 | 14939920 | 14939767 | ID=Msa1050390-mRNA-1:cds;Parent=Msa1050390-mRNA-1 |
| chr7_2 | CDS | 14938380 | 14939059 | 14938380 | ID=Msa1050390-mRNA-1:cds;Parent=Msa1050390-mRNA-1 |
| chr7_2 | three_prime_UTR | 14938153 | 14938379 | 14938153 | ID=Msa1050390-mRNA-1:three_prime_utr;Parent=Msa1050390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
