AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0316810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316810 MtrunA17_Chr2g0289841 96.624 237 4 1 1 237 1 233 8.59e-168 462
Msa0316810 MtrunA17_Chr4g0075711 80.660 212 41 0 25 236 15 226 1.03e-121 345
Msa0316810 MtrunA17_Chr3g0120921 77.273 198 45 0 39 236 28 225 6.04e-114 325
Msa0316810 MtrunA17_Chr8g0377621 67.052 173 57 0 64 236 59 231 5.73e-87 257
Msa0316810 MtrunA17_Chr3g0122221 67.429 175 56 1 63 236 52 226 3.59e-84 250
Msa0316810 MtrunA17_Chr7g0261611 50.000 190 93 2 46 234 29 217 2.86e-63 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316810 AT3G07880.1 77.273 198 44 1 39 236 41 237 7.42e-114 326
Msa0316810 AT1G62450.1 71.429 203 56 1 37 237 21 223 7.27e-98 285
Msa0316810 AT1G12070.1 69.608 204 60 1 35 236 19 222 3.41e-94 275

Find 88 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGGATTTCCATCTTC+TGG 0.210863 2_4:-14074575 None:intergenic
AGCACAAATAACAATGATTA+AGG 0.217161 2_4:-14075972 None:intergenic
GTCAACCATAACATTGTTTC+AGG 0.229464 2_4:+14074653 Msa0316810:CDS
CAATAACCCATCAACGAAAA+AGG 0.251245 2_4:-14073466 None:intergenic
TAATGTCCTCTTTAATCTAA+TGG 0.282822 2_4:-14076248 None:intergenic
CTCATCATTGTTAAGATTAC+CGG 0.289882 2_4:-14076065 None:intergenic
CTTTCAAACCTCCCCTATTT+CGG 0.305783 2_4:+14073248 Msa0316810:five_prime_UTR
CAGATTAATGTTCACTTTCC+AGG 0.308843 2_4:+14074631 Msa0316810:CDS
ACAAATATGGTCCTTGTTCT+TGG 0.315249 2_4:+14076173 Msa0316810:three_prime_UTR
CAAAACCACTTCTCCTTCAA+TGG 0.315692 2_4:-14073508 None:intergenic
CCAGATGGTGTTGTCTCTTC+AGG 0.324079 2_4:-14075111 None:intergenic
AGAAAGGACTGGCAGTAATT+AGG 0.336601 2_4:+14075899 Msa0316810:exon
ACCAACACTGTGTGGAAAAC+TGG 0.339922 2_4:+14074686 Msa0316810:CDS
GGGTCCACAATGTACCTTAA+AGG 0.356936 2_4:+14073735 Msa0316810:CDS
GAAGGAGGTGGTGGTGGTGG+TGG 0.358005 2_4:+14073625 Msa0316810:CDS
TCGTGTGGTGATCCGAAATA+GGG 0.363310 2_4:-14073260 None:intergenic
GGATTTCCATCTTCTGGTAT+TGG 0.367712 2_4:-14074569 None:intergenic
ATGATGAGAGCTTGAGGAGG+TGG 0.368412 2_4:+14073876 Msa0316810:CDS
CCTGAAGAGACAACACCATC+TGG 0.386766 2_4:+14075111 Msa0316810:CDS
GTCGTGTGGTGATCCGAAAT+AGG 0.397479 2_4:-14073261 None:intergenic
AGGAAGATGATGATGAAGAT+AGG 0.399631 2_4:+14073701 Msa0316810:CDS
CTTTGGAAGATTCTACCAAC+TGG 0.405068 2_4:+14073417 Msa0316810:five_prime_UTR
AAAGTAAACCACAAACCCTT+TGG 0.405134 2_4:-14074590 None:intergenic
AGGCTCAGAATCTTCACTTC+TGG 0.405375 2_4:-14074509 None:intergenic
TGTGAGAAATTTAGAAACTC+TGG 0.409824 2_4:+14074484 Msa0316810:intron
ATGTTTGGGGTGCACAAATA+TGG 0.411114 2_4:+14076160 Msa0316810:three_prime_UTR
ATGGAAATCCAAAGGGTTTG+TGG 0.414134 2_4:+14074582 Msa0316810:CDS
GGTATTGGAAGAACTATATC+AGG 0.417145 2_4:-14074554 None:intergenic
AATGAAGGAGGTGGTGGTGG+TGG 0.419453 2_4:+14073622 Msa0316810:CDS
AGGGAAAGAGAGAGAGGTGG+AGG 0.428643 2_4:-14073187 None:intergenic
GGAACAACTTGAAAAGGATA+AGG 0.428665 2_4:+14073756 Msa0316810:CDS
TCTTTGAGTACAACCATTGA+AGG 0.434934 2_4:+14073495 Msa0316810:five_prime_UTR
AGGTGGAAGGAACAGCTTCT+TGG 0.460032 2_4:+14073893 Msa0316810:CDS
AGTCTCAGTTTGAGGACTAA+AGG 0.467180 2_4:-14075073 None:intergenic
GATAGCAGTAAAGAAATGAT+TGG 0.472454 2_4:+14075048 Msa0316810:CDS
CTTAAAGGAACAACTTGAAA+AGG 0.479070 2_4:+14073750 Msa0316810:CDS
AGATGCCAAGAAGGCAGAGA+AGG 0.484178 2_4:-14073289 None:intergenic
TTGTGGTTTACTTTGAAAGA+AGG 0.487138 2_4:+14074599 Msa0316810:CDS
TTTAGGATGATGAGAGCTTG+AGG 0.494234 2_4:+14073870 Msa0316810:intron
GATAATGAAGGAGGTGGTGG+TGG 0.500855 2_4:+14073619 Msa0316810:CDS
TGAGACCTGAAACAATGTTA+TGG 0.506555 2_4:-14074658 None:intergenic
TGTGAAAAGTGATAAGGAAG+AGG 0.508987 2_4:+14073567 Msa0316810:CDS
TGATGATAACAAGTGCTACT+TGG 0.512860 2_4:+14075853 Msa0316810:CDS
TAAGAGAGGGAAAGAGAGAG+AGG 0.513591 2_4:-14073193 None:intergenic
TTTCTAATCCTGTCTGAGAC+CGG 0.514082 2_4:+14076046 Msa0316810:three_prime_UTR
GTTCTTCCAATACCAGAAGA+TGG 0.514303 2_4:+14074563 Msa0316810:CDS
TGAGAGAGAAAGTTTAAGAG+AGG 0.516276 2_4:-14073207 None:intergenic
GAGAGAGAAAGTTTAAGAGA+GGG 0.518831 2_4:-14073206 None:intergenic
GAAGATAGGAAGATTGAGTT+GGG 0.520070 2_4:+14073715 Msa0316810:CDS
ATCTGGGATGTTTGCTAGAG+GGG 0.521669 2_4:+14075128 Msa0316810:CDS
TGAAGATAGGAAGATTGAGT+TGG 0.526221 2_4:+14073714 Msa0316810:CDS
TGAGTGTAAGTCTCAGTTTG+AGG 0.527673 2_4:-14075081 None:intergenic
TAAGATTACCGGTCTCAGAC+AGG 0.539093 2_4:-14076054 None:intergenic
ACATATGAATCAATCAATGT+AGG 0.540113 2_4:-14075944 None:intergenic
GTGTGGAAAACTGGTATCAA+AGG 0.544247 2_4:+14074695 Msa0316810:CDS
GGCGTATTCAGCTAGAAGTA+AGG 0.544472 2_4:+14075149 Msa0316810:CDS
GAGAGGGAAAGAGAGAGAGG+TGG 0.549226 2_4:-14073190 None:intergenic
CCAGAAGATGGAAATCCAAA+GGG 0.550094 2_4:+14074575 Msa0316810:CDS
GAGTTCTGTTGCTGCTACTG+AGG 0.550601 2_4:+14073678 Msa0316810:CDS
ACCAGAAGATGGAAATCCAA+AGG 0.565847 2_4:+14074574 Msa0316810:CDS
CAAGAAGGCAGAGAAGGAAA+AGG 0.566078 2_4:-14073283 None:intergenic
AGGATGAAAAGATGCCAAGA+AGG 0.567991 2_4:-14073298 None:intergenic
TACAACCATTGAAGGAGAAG+TGG 0.568479 2_4:+14073503 Msa0316810:five_prime_UTR
AGTGTTGACATCAATGCTGT+TGG 0.578216 2_4:+14073917 Msa0316810:CDS
AGTGATAATGAAGGAGGTGG+TGG 0.578607 2_4:+14073616 Msa0316810:CDS
TATGAATCAATCAATGTAGG+AGG 0.579564 2_4:-14075941 None:intergenic
CATCTGGGATGTTTGCTAGA+GGG 0.580578 2_4:+14075127 Msa0316810:CDS
TGTTCCTTTAAGGTACATTG+TGG 0.585755 2_4:-14073739 None:intergenic
TGATAATGTGAAAAGTGATA+AGG 0.588267 2_4:+14073561 Msa0316810:CDS
CTGAAGAGACAACACCATCT+GGG 0.589031 2_4:+14075112 Msa0316810:CDS
AGGATGATGAGAGCTTGAGG+AGG 0.599532 2_4:+14073873 Msa0316810:intron
AAACAATGTTATGGTTGACC+TGG 0.602214 2_4:-14074649 None:intergenic
GTTGACATCAATGCTGTTGG+AGG 0.602320 2_4:+14073920 Msa0316810:CDS
CGTGTGGTGATCCGAAATAG+GGG 0.609821 2_4:-14073259 None:intergenic
TTTGGAAGATTCTACCAACT+GGG 0.610079 2_4:+14073418 Msa0316810:five_prime_UTR
TTCTGTTGCTGCTACTGAGG+AGG 0.610284 2_4:+14073681 Msa0316810:CDS
AGAAACAAGTAAAACACTGA+AGG 0.611286 2_4:-14076002 None:intergenic
TGAGAGCTTGAGGAGGTGGA+AGG 0.612840 2_4:+14073880 Msa0316810:CDS
CCATCTGGGATGTTTGCTAG+AGG 0.625157 2_4:+14075126 Msa0316810:CDS
GTTGAAGAAAGTGATAATGA+AGG 0.638901 2_4:+14073607 Msa0316810:CDS
CCTCTAGCAAACATCCCAGA+TGG 0.647489 2_4:-14075126 None:intergenic
GAAAGTGATAATGAAGGAGG+TGG 0.650808 2_4:+14073613 Msa0316810:CDS
TCAAGTACACCAACACTGTG+TGG 0.658417 2_4:+14074678 Msa0316810:CDS
GAAGAAAGTGATAATGAAGG+AGG 0.669435 2_4:+14073610 Msa0316810:CDS
GTAATCTTAACAATGATGAG+AGG 0.672415 2_4:+14076068 Msa0316810:three_prime_UTR
ATGCTATTATTCCAAGAACA+AGG 0.680928 2_4:-14076184 None:intergenic
CAGAGAAGGAAAAGGTCGTG+TGG 0.684242 2_4:-14073275 None:intergenic
GTGGTGATCCGAAATAGGGG+AGG 0.696813 2_4:-14073256 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAACAACATAATTAAA+AGG - chr2_4:14074325-14074344 None:intergenic 10.0%
!! AATAAATGTTCTAATAAATT+TGG + chr2_4:14075549-14075568 Msa0316810:intron 10.0%
!!! ATTATGTTGTTTATATAGAT+AGG + chr2_4:14074329-14074348 Msa0316810:intron 15.0%
!! ACATTTATTGAATTTATTGA+TGG - chr2_4:14075538-14075557 None:intergenic 15.0%
!!! TTTGTTTTTGTTGTGATTTT+AGG + chr2_4:14073853-14073872 Msa0316810:intron 20.0%
!!! AAACAGAATAAATGTCATTT+TGG + chr2_4:14074158-14074177 Msa0316810:intron 20.0%
!! TTAATGATTCAATTAGTACT+TGG - chr2_4:14074406-14074425 None:intergenic 20.0%
!! TACTACTACTAATATATGTT+TGG - chr2_4:14075285-14075304 None:intergenic 20.0%
!! ATTAGTAGTAGTATTATTGT+TGG + chr2_4:14075292-14075311 Msa0316810:intron 20.0%
!!! TTACATATTTTCACTTGTTT+GGG + chr2_4:14075465-14075484 Msa0316810:intron 20.0%
!! TAATTCAAATATCAGAAAAG+TGG - chr2_4:14075602-14075621 None:intergenic 20.0%
! AGAAAAATGAGATAAAGCAA+AGG - chr2_4:14073321-14073340 None:intergenic 25.0%
!! TTGAATTCTGAGAAAAAAGA+TGG + chr2_4:14073528-14073547 Msa0316810:exon 25.0%
!! TGAATTCTGAGAAAAAAGAT+GGG + chr2_4:14073529-14073548 Msa0316810:exon 25.0%
!! TGATAATGTGAAAAGTGATA+AGG + chr2_4:14073561-14073580 Msa0316810:CDS 25.0%
!!! TCTTTGAAGATTTTGAATTG+TGG + chr2_4:14074118-14074137 Msa0316810:intron 25.0%
!!! TCTGTTTTAGATAATGCTTT+AGG - chr2_4:14074145-14074164 None:intergenic 25.0%
!!! AATAAATGTCATTTTGGTCA+TGG + chr2_4:14074164-14074183 Msa0316810:intron 25.0%
!!! TCTGCATCATCTTTTATTTA+AGG + chr2_4:14074217-14074236 Msa0316810:intron 25.0%
!!! CATCTTTTATTTAAGGTCTT+AGG + chr2_4:14074224-14074243 Msa0316810:intron 25.0%
! AATTTCTCACAATAAACCAA+TGG - chr2_4:14074475-14074494 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAATCA+GGG + chr2_4:14074963-14074982 Msa0316810:intron 25.0%
!! CTTACATATTTTCACTTGTT+TGG + chr2_4:14075464-14075483 Msa0316810:intron 25.0%
!!! AATTACTTCTCTGAAATTCT+TGG + chr2_4:14075617-14075636 Msa0316810:intron 25.0%
! ACATATGAATCAATCAATGT+AGG - chr2_4:14075947-14075966 None:intergenic 25.0%
! AGCACAAATAACAATGATTA+AGG - chr2_4:14075975-14075994 None:intergenic 25.0%
!!! AAATTTGAGTTTTGCATGTT+TGG + chr2_4:14076145-14076164 Msa0316810:three_prime_UTR 25.0%
!!! AATTTGAGTTTTGCATGTTT+GGG + chr2_4:14076146-14076165 Msa0316810:three_prime_UTR 25.0%
! TTTCTTTTGTTACAAACCCA+AGG + chr2_4:14073379-14073398 Msa0316810:five_prime_UTR 30.0%
!! GAACAAGAAAAAAGTACCTT+GGG - chr2_4:14073398-14073417 None:intergenic 30.0%
!! AGAACAAGAAAAAAGTACCT+TGG - chr2_4:14073399-14073418 None:intergenic 30.0%
!!! GGTACTTTTTTCTTGTTCTT+TGG + chr2_4:14073400-14073419 Msa0316810:five_prime_UTR 30.0%
AATAACCCATCAACGAAAAA+GGG - chr2_4:14073468-14073487 None:intergenic 30.0%
! GTTGAAGAAAGTGATAATGA+AGG + chr2_4:14073607-14073626 Msa0316810:CDS 30.0%
!!! CTTTTCAAGTTGTTCCTTTA+AGG - chr2_4:14073752-14073771 None:intergenic 30.0%
CTTAAAGGAACAACTTGAAA+AGG + chr2_4:14073750-14073769 Msa0316810:CDS 30.0%
ACCTCATAATGAAAATCCAT+TGG + chr2_4:14074456-14074475 Msa0316810:intron 30.0%
!! ACCAATGGATTTTCATTATG+AGG - chr2_4:14074460-14074479 None:intergenic 30.0%
TGTGAGAAATTTAGAAACTC+TGG + chr2_4:14074484-14074503 Msa0316810:intron 30.0%
! TTGTGGTTTACTTTGAAAGA+AGG + chr2_4:14074599-14074618 Msa0316810:CDS 30.0%
GTAAGTGATTATGCGATAAA+CGG + chr2_4:14074936-14074955 Msa0316810:intron 30.0%
! GTTAAGTTGTTTATCCAATC+AGG + chr2_4:14074962-14074981 Msa0316810:intron 30.0%
ACATAAACTATTACCCTGAT+TGG - chr2_4:14074979-14074998 None:intergenic 30.0%
GTTTATGTCAAACCATAAAC+TGG + chr2_4:14074991-14075010 Msa0316810:intron 30.0%
TCAACTGTAACAAACAAACA+AGG - chr2_4:14075030-14075049 None:intergenic 30.0%
GATAGCAGTAAAGAAATGAT+TGG + chr2_4:14075048-14075067 Msa0316810:CDS 30.0%
AGATACTATGAATGTTGTGA+AGG + chr2_4:14075368-14075387 Msa0316810:intron 30.0%
AATATCAGAAAAGTGGTTGA+AGG - chr2_4:14075595-14075614 None:intergenic 30.0%
ATTGCTTCATTCAAAAGCAA+AGG - chr2_4:14075664-14075683 None:intergenic 30.0%
! CTACACTTTTGATATCAGAA+AGG + chr2_4:14075883-14075902 Msa0316810:CDS 30.0%
TATGAATCAATCAATGTAGG+AGG - chr2_4:14075944-14075963 None:intergenic 30.0%
AGAAACAAGTAAAACACTGA+AGG - chr2_4:14076005-14076024 None:intergenic 30.0%
CTCATCATTGTTAAGATTAC+CGG - chr2_4:14076068-14076087 None:intergenic 30.0%
GTAATCTTAACAATGATGAG+AGG + chr2_4:14076068-14076087 Msa0316810:three_prime_UTR 30.0%
!! AGGATTTTGAAGGATGAAAT+TGG + chr2_4:14076088-14076107 Msa0316810:three_prime_UTR 30.0%
!! ATTTGAGTTTTGCATGTTTG+GGG + chr2_4:14076147-14076166 Msa0316810:three_prime_UTR 30.0%
ATGCTATTATTCCAAGAACA+AGG - chr2_4:14076187-14076206 None:intergenic 30.0%
GAGAGAGAAAGTTTAAGAGA+GGG - chr2_4:14073209-14073228 None:intergenic 35.0%
TGAGAGAGAAAGTTTAAGAG+AGG - chr2_4:14073210-14073229 None:intergenic 35.0%
TTTGGAAGATTCTACCAACT+GGG + chr2_4:14073418-14073437 Msa0316810:five_prime_UTR 35.0%
AAAAACAAAAACGACCCAGT+TGG - chr2_4:14073435-14073454 None:intergenic 35.0%
!! ATTTGTCCCTTTTTCGTTGA+TGG + chr2_4:14073459-14073478 Msa0316810:five_prime_UTR 35.0%
!! TTTGTCCCTTTTTCGTTGAT+GGG + chr2_4:14073460-14073479 Msa0316810:five_prime_UTR 35.0%
CAATAACCCATCAACGAAAA+AGG - chr2_4:14073469-14073488 None:intergenic 35.0%
TCTTTGAGTACAACCATTGA+AGG + chr2_4:14073495-14073514 Msa0316810:five_prime_UTR 35.0%
TGTGAAAAGTGATAAGGAAG+AGG + chr2_4:14073567-14073586 Msa0316810:CDS 35.0%
! GAAGAAAGTGATAATGAAGG+AGG + chr2_4:14073610-14073629 Msa0316810:CDS 35.0%
! AGGAAGATGATGATGAAGAT+AGG + chr2_4:14073701-14073720 Msa0316810:CDS 35.0%
TGAAGATAGGAAGATTGAGT+TGG + chr2_4:14073714-14073733 Msa0316810:CDS 35.0%
GAAGATAGGAAGATTGAGTT+GGG + chr2_4:14073715-14073734 Msa0316810:CDS 35.0%
!! TGTTCCTTTAAGGTACATTG+TGG - chr2_4:14073742-14073761 None:intergenic 35.0%
GGAACAACTTGAAAAGGATA+AGG + chr2_4:14073756-14073775 Msa0316810:CDS 35.0%
! GCATTTTCTGCATTGTTTGT+TGG + chr2_4:14074055-14074074 Msa0316810:intron 35.0%
GAAAAACAAGCAACACTAGA+AGG - chr2_4:14074303-14074322 None:intergenic 35.0%
! TATCAGCAGCTTTTATTGCA+AGG - chr2_4:14074532-14074551 None:intergenic 35.0%
! GGTATTGGAAGAACTATATC+AGG - chr2_4:14074557-14074576 None:intergenic 35.0%
AAAGTAAACCACAAACCCTT+TGG - chr2_4:14074593-14074612 None:intergenic 35.0%
CAGATTAATGTTCACTTTCC+AGG + chr2_4:14074631-14074650 Msa0316810:CDS 35.0%
AAACAATGTTATGGTTGACC+TGG - chr2_4:14074652-14074671 None:intergenic 35.0%
GTCAACCATAACATTGTTTC+AGG + chr2_4:14074653-14074672 Msa0316810:CDS 35.0%
TGAGACCTGAAACAATGTTA+TGG - chr2_4:14074661-14074680 None:intergenic 35.0%
TAGCTCTTGATTCATCGTTA+AGG - chr2_4:14075202-14075221 None:intergenic 35.0%
ATCAAGAGCTAGTGTATGTT+TGG + chr2_4:14075211-14075230 Msa0316810:intron 35.0%
! TTTTCTTAACTCATAGCAGC+TGG - chr2_4:14075411-14075430 None:intergenic 35.0%
TTGAATGAAGCAATTGACAG+AGG + chr2_4:14075670-14075689 Msa0316810:intron 35.0%
! TGATGATAACAAGTGCTACT+TGG + chr2_4:14075853-14075872 Msa0316810:CDS 35.0%
! CTTTTGATATCAGAAAGGAC+TGG + chr2_4:14075888-14075907 Msa0316810:CDS 35.0%
! CAATGATGAGAGGATTTTGA+AGG + chr2_4:14076078-14076097 Msa0316810:three_prime_UTR 35.0%
ACAAATATGGTCCTTGTTCT+TGG + chr2_4:14076173-14076192 Msa0316810:three_prime_UTR 35.0%
CTTTCAAACCTCCCCTATTT+CGG + chr2_4:14073248-14073267 Msa0316810:five_prime_UTR 40.0%
AGGATGAAAAGATGCCAAGA+AGG - chr2_4:14073301-14073320 None:intergenic 40.0%
! CTTTGGAAGATTCTACCAAC+TGG + chr2_4:14073417-14073436 Msa0316810:five_prime_UTR 40.0%
TACAACCATTGAAGGAGAAG+TGG + chr2_4:14073503-14073522 Msa0316810:five_prime_UTR 40.0%
CAAAACCACTTCTCCTTCAA+TGG - chr2_4:14073511-14073530 None:intergenic 40.0%
! GAAAGTGATAATGAAGGAGG+TGG + chr2_4:14073613-14073632 Msa0316810:CDS 40.0%
! TTTAGGATGATGAGAGCTTG+AGG + chr2_4:14073870-14073889 Msa0316810:intron 40.0%
!! AGTGTTGACATCAATGCTGT+TGG + chr2_4:14073917-14073936 Msa0316810:CDS 40.0%
GTTCTTCCAATACCAGAAGA+TGG + chr2_4:14074563-14074582 Msa0316810:CDS 40.0%
GGATTTCCATCTTCTGGTAT+TGG - chr2_4:14074572-14074591 None:intergenic 40.0%
ACCAGAAGATGGAAATCCAA+AGG + chr2_4:14074574-14074593 Msa0316810:CDS 40.0%
CCAGAAGATGGAAATCCAAA+GGG + chr2_4:14074575-14074594 Msa0316810:CDS 40.0%
ATGGAAATCCAAAGGGTTTG+TGG + chr2_4:14074582-14074601 Msa0316810:CDS 40.0%
GTGTGGAAAACTGGTATCAA+AGG + chr2_4:14074695-14074714 Msa0316810:CDS 40.0%
TCATATCAATCCCTCTCTCA+GGG + chr2_4:14074722-14074741 Msa0316810:intron 40.0%
TCAACAATGAGGCCAGTTTA+TGG - chr2_4:14075006-14075025 None:intergenic 40.0%
ACAAACAAGGCTCAACAATG+AGG - chr2_4:14075017-14075036 None:intergenic 40.0%
AGTCTCAGTTTGAGGACTAA+AGG - chr2_4:14075076-14075095 None:intergenic 40.0%
TGAGTGTAAGTCTCAGTTTG+AGG - chr2_4:14075084-14075103 None:intergenic 40.0%
GAGCTAGTGTATGTTTGGAT+TGG + chr2_4:14075216-14075235 Msa0316810:intron 40.0%
! CTAGTGTATGTTTGGATTGG+CGG + chr2_4:14075219-14075238 Msa0316810:intron 40.0%
TGTATTTGGCCACTATGGTT+TGG + chr2_4:14075242-14075261 Msa0316810:intron 40.0%
TGAGTTTGACCAAACCATAG+TGG - chr2_4:14075254-14075273 None:intergenic 40.0%
TGTCTGTGTCAATGCTTCAT+AGG - chr2_4:14075735-14075754 None:intergenic 40.0%
! AGAAAGGACTGGCAGTAATT+AGG + chr2_4:14075899-14075918 Msa0316810:exon 40.0%
! TTTCTAATCCTGTCTGAGAC+CGG + chr2_4:14076046-14076065 Msa0316810:three_prime_UTR 40.0%
! ATGTTTGGGGTGCACAAATA+TGG + chr2_4:14076160-14076179 Msa0316810:three_prime_UTR 40.0%
TAAGAGAGGGAAAGAGAGAG+AGG - chr2_4:14073196-14073215 None:intergenic 45.0%
TCGTGTGGTGATCCGAAATA+GGG - chr2_4:14073263-14073282 None:intergenic 45.0%
CAAGAAGGCAGAGAAGGAAA+AGG - chr2_4:14073286-14073305 None:intergenic 45.0%
! CTTTTCCTTCTCTGCCTTCT+TGG + chr2_4:14073284-14073303 Msa0316810:five_prime_UTR 45.0%
! AGTGATAATGAAGGAGGTGG+TGG + chr2_4:14073616-14073635 Msa0316810:CDS 45.0%
GGGTCCACAATGTACCTTAA+AGG + chr2_4:14073735-14073754 Msa0316810:CDS 45.0%
GTTGACATCAATGCTGTTGG+AGG + chr2_4:14073920-14073939 Msa0316810:CDS 45.0%
AGGCTCAGAATCTTCACTTC+TGG - chr2_4:14074512-14074531 None:intergenic 45.0%
CCCTTTGGATTTCCATCTTC+TGG - chr2_4:14074578-14074597 None:intergenic 45.0%
TCAAGTACACCAACACTGTG+TGG + chr2_4:14074678-14074697 Msa0316810:CDS 45.0%
ACCAACACTGTGTGGAAAAC+TGG + chr2_4:14074686-14074705 Msa0316810:CDS 45.0%
! ACCAGTTTTCCACACAGTGT+TGG - chr2_4:14074690-14074709 None:intergenic 45.0%
CTCATATCAATCCCTCTCTC+AGG + chr2_4:14074721-14074740 Msa0316810:intron 45.0%
TCAAAACATGCCCTGAGAGA+GGG - chr2_4:14074735-14074754 None:intergenic 45.0%
ATCAAAACATGCCCTGAGAG+AGG - chr2_4:14074736-14074755 None:intergenic 45.0%
CTGAAGAGACAACACCATCT+GGG + chr2_4:14075112-14075131 Msa0316810:CDS 45.0%
! CATCTGGGATGTTTGCTAGA+GGG + chr2_4:14075127-14075146 Msa0316810:CDS 45.0%
! ATCTGGGATGTTTGCTAGAG+GGG + chr2_4:14075128-14075147 Msa0316810:CDS 45.0%
GGCGTATTCAGCTAGAAGTA+AGG + chr2_4:14075149-14075168 Msa0316810:CDS 45.0%
!! GTTTGGATTGGCGGTGTATT+TGG + chr2_4:14075228-14075247 Msa0316810:intron 45.0%
! AGCTGGCAAATGAAAGGTGT+AGG - chr2_4:14075394-14075413 None:intergenic 45.0%
CATAGCAGCTGGCAAATGAA+AGG - chr2_4:14075400-14075419 None:intergenic 45.0%
TAAGATTACCGGTCTCAGAC+AGG - chr2_4:14076057-14076076 None:intergenic 45.0%
CGTGTGGTGATCCGAAATAG+GGG - chr2_4:14073262-14073281 None:intergenic 50.0%
GTCGTGTGGTGATCCGAAAT+AGG - chr2_4:14073264-14073283 None:intergenic 50.0%
CAGAGAAGGAAAAGGTCGTG+TGG - chr2_4:14073278-14073297 None:intergenic 50.0%
AGATGCCAAGAAGGCAGAGA+AGG - chr2_4:14073292-14073311 None:intergenic 50.0%
! GATAATGAAGGAGGTGGTGG+TGG + chr2_4:14073619-14073638 Msa0316810:CDS 50.0%
GAGTTCTGTTGCTGCTACTG+AGG + chr2_4:14073678-14073697 Msa0316810:CDS 50.0%
TTCTGTTGCTGCTACTGAGG+AGG + chr2_4:14073681-14073700 Msa0316810:CDS 50.0%
AGGATGATGAGAGCTTGAGG+AGG + chr2_4:14073873-14073892 Msa0316810:intron 50.0%
ATGATGAGAGCTTGAGGAGG+TGG + chr2_4:14073876-14073895 Msa0316810:CDS 50.0%
AGGTGGAAGGAACAGCTTCT+TGG + chr2_4:14073893-14073912 Msa0316810:CDS 50.0%
!! CCAGATGGTGTTGTCTCTTC+AGG - chr2_4:14075114-14075133 None:intergenic 50.0%
CCTGAAGAGACAACACCATC+TGG + chr2_4:14075111-14075130 Msa0316810:CDS 50.0%
CCTCTAGCAAACATCCCAGA+TGG - chr2_4:14075129-14075148 None:intergenic 50.0%
! CCATCTGGGATGTTTGCTAG+AGG + chr2_4:14075126-14075145 Msa0316810:CDS 50.0%
AAGAGTTAGTGAGCCTGAGC+TGG + chr2_4:14075430-14075449 Msa0316810:intron 50.0%
AGCAGATAAGAGTCCAGCTC+AGG - chr2_4:14075446-14075465 None:intergenic 50.0%
CATTGACACAGACACGACAC+TGG + chr2_4:14075741-14075760 Msa0316810:intron 50.0%
AGGGAAAGAGAGAGAGGTGG+AGG - chr2_4:14073190-14073209 None:intergenic 55.0%
GAGAGGGAAAGAGAGAGAGG+TGG - chr2_4:14073193-14073212 None:intergenic 55.0%
GTGGTGATCCGAAATAGGGG+AGG - chr2_4:14073259-14073278 None:intergenic 55.0%
!! AATGAAGGAGGTGGTGGTGG+TGG + chr2_4:14073622-14073641 Msa0316810:CDS 55.0%
TGAGAGCTTGAGGAGGTGGA+AGG + chr2_4:14073880-14073899 Msa0316810:CDS 55.0%
GGCGGTGTATTTGGCCACTA+TGG + chr2_4:14075237-14075256 Msa0316810:intron 55.0%
!! GAAGGAGGTGGTGGTGGTGG+TGG + chr2_4:14073625-14073644 Msa0316810:CDS 65.0%
!! GAGGTGGTGGTGGTGGTGGT+GGG + chr2_4:14073629-14073648 Msa0316810:CDS 65.0%
!! AGGTGGTGGTGGTGGTGGTG+GGG + chr2_4:14073630-14073649 Msa0316810:CDS 65.0%
!! GGAGGTGGTGGTGGTGGTGG+TGG + chr2_4:14073628-14073647 Msa0316810:CDS 70.0%
!! GGTGGTGGTGGTGGTGGTGG+GGG + chr2_4:14073631-14073650 Msa0316810:CDS 70.0%
!! GGTGGTGGTGGTGGTGGGGG+TGG + chr2_4:14073634-14073653 Msa0316810:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 14073144 14076257 14073144 ID=Msa0316810;Name=Msa0316810
chr2_4 mRNA 14073144 14076257 14073144 ID=Msa0316810-mRNA-1;Parent=Msa0316810;Name=Msa0316810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=403|1|1|1|1|1|5|341|237
chr2_4 exon 14073144 14073777 14073144 ID=Msa0316810-mRNA-1:exon:5325;Parent=Msa0316810-mRNA-1
chr2_4 exon 14073875 14073941 14073875 ID=Msa0316810-mRNA-1:exon:5326;Parent=Msa0316810-mRNA-1
chr2_4 exon 14074498 14074716 14074498 ID=Msa0316810-mRNA-1:exon:5327;Parent=Msa0316810-mRNA-1
chr2_4 exon 14075046 14075170 14075046 ID=Msa0316810-mRNA-1:exon:5328;Parent=Msa0316810-mRNA-1
chr2_4 exon 14075845 14076257 14075845 ID=Msa0316810-mRNA-1:exon:5329;Parent=Msa0316810-mRNA-1
chr2_4 five_prime_UTR 14073144 14073546 14073144 ID=Msa0316810-mRNA-1:five_prime_utr;Parent=Msa0316810-mRNA-1
chr2_4 CDS 14073547 14073777 14073547 ID=Msa0316810-mRNA-1:cds;Parent=Msa0316810-mRNA-1
chr2_4 CDS 14073875 14073941 14073875 ID=Msa0316810-mRNA-1:cds;Parent=Msa0316810-mRNA-1
chr2_4 CDS 14074498 14074716 14074498 ID=Msa0316810-mRNA-1:cds;Parent=Msa0316810-mRNA-1
chr2_4 CDS 14075046 14075170 14075046 ID=Msa0316810-mRNA-1:cds;Parent=Msa0316810-mRNA-1
chr2_4 CDS 14075845 14075916 14075845 ID=Msa0316810-mRNA-1:cds;Parent=Msa0316810-mRNA-1
chr2_4 three_prime_UTR 14075917 14076257 14075917 ID=Msa0316810-mRNA-1:three_prime_utr;Parent=Msa0316810-mRNA-1
Gene Sequence

>Msa0316810

ATGGGTCTTGATGATGATAATGTGAAAAGTGATAAGGAAGAGGAGAAGAGTTCTCGTGTTGTTGAAGAAAGTGATAATGAAGGAGGTGGTGGTGGTGGTGGTGGGGGTGGCGATAGCAGATACATGAGTGAGAGTTCTGTTGCTGCTACTGAGGAGGAAGATGATGATGAAGATAGGAAGATTGAGTTGGGTCCACAATGTACCTTAAAGGAACAACTTGAAAAGGATAAGGATGATGAGAGCTTGAGGAGGTGGAAGGAACAGCTTCTTGGAAGTGTTGACATCAATGCTGTTGGAGAAACTCTGGAGCCAGAAGTGAAGATTCTGAGCCTTGCAATAAAAGCTGCTGATAGACCTGATATAGTTCTTCCAATACCAGAAGATGGAAATCCAAAGGGTTTGTGGTTTACTTTGAAAGAAGGTAGCAAATACAGATTAATGTTCACTTTCCAGGTCAACCATAACATTGTTTCAGGTCTCAAGTACACCAACACTGTGTGGAAAACTGGTATCAAAGTTGATAGCAGTAAAGAAATGATTGGAACCTTTAGTCCTCAAACTGAGACTTACACTCATGAGATGCCTGAAGAGACAACACCATCTGGGATGTTTGCTAGAGGGGCGTATTCAGCTAGAAGTAAGTTTGTTGATGATGATAACAAGTGCTACTTGGAGATCAACTACACTTTTGATATCAGAAAGGACTGGCAGTAA

Protein sequence

>Msa0316810

MGLDDDNVKSDKEEEKSSRVVEESDNEGGGGGGGGGGDSRYMSESSVAATEEEDDDEDRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDINAVGETLEPEVKILSLAIKAADRPDIVLPIPEDGNPKGLWFTLKEGSKYRLMFTFQVNHNIVSGLKYTNTVWKTGIKVDSSKEMIGTFSPQTETYTHEMPEETTPSGMFARGAYSARSKFVDDDNKCYLEINYTFDIRKDWQ*