Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346280 | XP_003595690.2 | 96.774 | 217 | 7 | 0 | 1 | 217 | 737 | 953 | 2.47e-137 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346280 | sp|F4JF14|ENOL1_ARATH | 42.035 | 226 | 107 | 6 | 1 | 216 | 742 | 953 | 7.73e-37 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346280 | G7IT11 | 96.774 | 217 | 7 | 0 | 1 | 217 | 737 | 953 | 1.18e-137 | 418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa1346280 | 0.804069 | 2.578127e-49 | -8.615850e-47 |
| Msa0005890 | Msa1346280 | 0.812738 | 3.645159e-51 | -8.615850e-47 |
| Msa0017510 | Msa1346280 | 0.828485 | 8.758923e-55 | -8.615850e-47 |
| Msa0028420 | Msa1346280 | 0.833628 | 4.780833e-56 | -8.615850e-47 |
| Msa0028580 | Msa1346280 | 0.806012 | 1.011531e-49 | -8.615850e-47 |
| Msa0028640 | Msa1346280 | 0.801130 | 1.041076e-48 | -8.615850e-47 |
| Msa0043620 | Msa1346280 | 0.806096 | 9.711923e-50 | -8.615850e-47 |
| Msa0074240 | Msa1346280 | 0.826319 | 2.895638e-54 | -8.615850e-47 |
| Msa0076250 | Msa1346280 | 0.852963 | 3.269748e-61 | -8.615850e-47 |
| Msa0089630 | Msa1346280 | 0.818591 | 1.809956e-52 | -8.615850e-47 |
| Msa0092790 | Msa1346280 | 0.804284 | 2.325496e-49 | -8.615850e-47 |
| Msa0094140 | Msa1346280 | 0.800041 | 1.735951e-48 | -8.615850e-47 |
| Msa1346280 | Msa1361400 | 0.825545 | 4.422464e-54 | -8.615850e-47 |
| Msa1346280 | Msa1361410 | 0.827469 | 1.537782e-54 | -8.615850e-47 |
| Msa1346280 | Msa1373100 | 0.817173 | 3.782968e-52 | -8.615850e-47 |
| Msa1346280 | Msa1374040 | 0.807540 | 4.808868e-50 | -8.615850e-47 |
| Msa1346280 | Msa1374550 | 0.833935 | 4.006784e-56 | -8.615850e-47 |
| Msa1346280 | Msa1391770 | 0.804378 | 2.223254e-49 | -8.615850e-47 |
| Msa1346280 | Msa1396030 | 0.808064 | 3.721262e-50 | -8.615850e-47 |
| Msa1346280 | Msa1402400 | 0.808442 | 3.091381e-50 | -8.615850e-47 |
| Msa1346280 | Msa1422950 | 0.817360 | 3.433943e-52 | -8.615850e-47 |
| Msa1346280 | Msa1440880 | 0.813230 | 2.843256e-51 | -8.615850e-47 |
| Msa1346280 | Msa1446810 | 0.818546 | 1.853118e-52 | -8.615850e-47 |
| Msa1346280 | Msa1446820 | 0.829850 | 4.087566e-55 | -8.615850e-47 |
| Msa1346280 | Msa1451160 | 0.843329 | 1.497864e-58 | -8.615850e-47 |
| Msa1346280 | Msa1464810 | 0.815889 | 7.334065e-52 | -8.615850e-47 |
| Msa1346280 | Msa1466540 | 0.809359 | 1.967858e-50 | -8.615850e-47 |
| Msa1346280 | Msa1466920 | 0.834617 | 2.703035e-56 | -8.615850e-47 |
| Msa0625720 | Msa1346280 | 0.803566 | 3.279273e-49 | -8.615850e-47 |
| Msa0626510 | Msa1346280 | 0.800680 | 1.286516e-48 | -8.615850e-47 |
| Msa0627450 | Msa1346280 | 0.811270 | 7.614165e-51 | -8.615850e-47 |
| Msa0637560 | Msa1346280 | 0.808485 | 3.026303e-50 | -8.615850e-47 |
| Msa0637580 | Msa1346280 | 0.801947 | 7.080691e-49 | -8.615850e-47 |
| Msa0639430 | Msa1346280 | 0.801377 | 9.265644e-49 | -8.615850e-47 |
| Msa0643080 | Msa1346280 | 0.827802 | 1.279579e-54 | -8.615850e-47 |
| Msa0650020 | Msa1346280 | 0.807012 | 6.223036e-50 | -8.615850e-47 |
| Msa0667050 | Msa1346280 | 0.801571 | 8.455574e-49 | -8.615850e-47 |
| Msa0677410 | Msa1346280 | 0.806352 | 8.577408e-50 | -8.615850e-47 |
| Msa0683510 | Msa1346280 | 0.812679 | 3.754218e-51 | -8.615850e-47 |
| Msa0683570 | Msa1346280 | 0.802160 | 6.400433e-49 | -8.615850e-47 |
| Msa0691980 | Msa1346280 | 0.804982 | 1.663470e-49 | -8.615850e-47 |
| Msa0727710 | Msa1346280 | 0.808132 | 3.598730e-50 | -8.615850e-47 |
| Msa0739730 | Msa1346280 | 0.849365 | 3.389138e-60 | -8.615850e-47 |
| Msa0741240 | Msa1346280 | 0.820165 | 7.921644e-53 | -8.615850e-47 |
| Msa0785250 | Msa1346280 | 0.800648 | 1.305749e-48 | -8.615850e-47 |
| Msa0795870 | Msa1346280 | 0.810409 | 1.169632e-50 | -8.615850e-47 |
| Msa0828560 | Msa1346280 | 0.837498 | 5.018199e-57 | -8.615850e-47 |
| Msa0833650 | Msa1346280 | 0.803413 | 3.528161e-49 | -8.615850e-47 |
| Msa0124060 | Msa1346280 | 0.810558 | 1.085683e-50 | -8.615850e-47 |
| Msa0124280 | Msa1346280 | 0.853050 | 3.087550e-61 | -8.615850e-47 |
| Msa0146260 | Msa1346280 | 0.801422 | 9.072322e-49 | -8.615850e-47 |
| Msa0157290 | Msa1346280 | 0.828684 | 7.838343e-55 | -8.615850e-47 |
| Msa0168500 | Msa1346280 | 0.824623 | 7.301363e-54 | -8.615850e-47 |
| Msa0182190 | Msa1346280 | 0.805132 | 1.547503e-49 | -8.615850e-47 |
| Msa0200260 | Msa1346280 | 0.817096 | 3.936425e-52 | -8.615850e-47 |
| Msa0223080 | Msa1346280 | 0.825465 | 4.618804e-54 | -8.615850e-47 |
| Msa0225760 | Msa1346280 | 0.801295 | 9.632461e-49 | -8.615850e-47 |
| Msa0225860 | Msa1346280 | 0.807242 | 5.563085e-50 | -8.615850e-47 |
| Msa0230740 | Msa1346280 | 0.814202 | 1.737568e-51 | -8.615850e-47 |
| Msa1239920 | Msa1346280 | 0.802288 | 6.024218e-49 | -8.615850e-47 |
| Msa1253550 | Msa1346280 | 0.814229 | 1.713226e-51 | -8.615850e-47 |
| Msa1267900 | Msa1346280 | 0.804585 | 2.013051e-49 | -8.615850e-47 |
| Msa1276660 | Msa1346280 | 0.805612 | 1.227019e-49 | -8.615850e-47 |
| Msa1298370 | Msa1346280 | 0.810835 | 9.460441e-51 | -8.615850e-47 |
| Msa1300340 | Msa1346280 | 0.812496 | 4.117226e-51 | -8.615850e-47 |
| Msa1303240 | Msa1346280 | 0.834432 | 3.007702e-56 | -8.615850e-47 |
| Msa1303250 | Msa1346280 | 0.845167 | 4.807858e-59 | -8.615850e-47 |
| Msa1328710 | Msa1346280 | 0.822153 | 2.759190e-53 | -8.615850e-47 |
| Msa0370030 | Msa1346280 | 0.812788 | 3.554591e-51 | -8.615850e-47 |
| Msa0376350 | Msa1346280 | 0.821030 | 5.013149e-53 | -8.615850e-47 |
| Msa0378720 | Msa1346280 | 0.802904 | 4.496554e-49 | -8.615850e-47 |
| Msa0392420 | Msa1346280 | 0.802002 | 6.896102e-49 | -8.615850e-47 |
| Msa0392490 | Msa1346280 | 0.808858 | 2.519248e-50 | -8.615850e-47 |
| Msa0392510 | Msa1346280 | 0.803252 | 3.808925e-49 | -8.615850e-47 |
| Msa0403970 | Msa1346280 | 0.804707 | 1.898526e-49 | -8.615850e-47 |
| Msa0417880 | Msa1346280 | 0.812454 | 4.205546e-51 | -8.615850e-47 |
| Msa0424790 | Msa1346280 | 0.819788 | 9.662589e-53 | -8.615850e-47 |
| Msa0467490 | Msa1346280 | 0.808148 | 3.571604e-50 | -8.615850e-47 |
| Msa0475790 | Msa1346280 | 0.813836 | 2.092086e-51 | -8.615850e-47 |
| Msa0479170 | Msa1346280 | 0.816911 | 4.331696e-52 | -8.615850e-47 |
| Msa1004840 | Msa1346280 | 0.818216 | 2.201184e-52 | -8.615850e-47 |
| Msa1019430 | Msa1346280 | 0.821296 | 4.353886e-53 | -8.615850e-47 |
| Msa1019470 | Msa1346280 | 0.820440 | 6.852312e-53 | -8.615850e-47 |
| Msa1041670 | Msa1346280 | 0.809897 | 1.507946e-50 | -8.615850e-47 |
| Msa1045140 | Msa1346280 | 0.809733 | 1.635486e-50 | -8.615850e-47 |
| Msa1050390 | Msa1346280 | 0.806009 | 1.012787e-49 | -8.615850e-47 |
| Msa1078170 | Msa1346280 | 0.831854 | 1.318402e-55 | -8.615850e-47 |
| Msa1093840 | Msa1346280 | 0.826200 | 3.090118e-54 | -8.615850e-47 |
| Msa1103990 | Msa1346280 | 0.820245 | 7.595430e-53 | -8.615850e-47 |
| Msa0243100 | Msa1346280 | 0.824375 | 8.350907e-54 | -8.615850e-47 |
| Msa0261340 | Msa1346280 | 0.825968 | 3.509918e-54 | -8.615850e-47 |
| Msa0287650 | Msa1346280 | 0.810106 | 1.359568e-50 | -8.615850e-47 |
| Msa0292400 | Msa1346280 | 0.800910 | 1.154885e-48 | -8.615850e-47 |
| Msa0298470 | Msa1346280 | 0.805705 | 1.173103e-49 | -8.615850e-47 |
| Msa0300270 | Msa1346280 | 0.805598 | 1.235340e-49 | -8.615850e-47 |
| Msa0300690 | Msa1346280 | 0.809052 | 2.289383e-50 | -8.615850e-47 |
| Msa0302160 | Msa1346280 | 0.827752 | 1.315347e-54 | -8.615850e-47 |
| Msa0302170 | Msa1346280 | 0.800937 | 1.140207e-48 | -8.615850e-47 |
| Msa0316810 | Msa1346280 | 0.806301 | 8.792400e-50 | -8.615850e-47 |
| Msa0339490 | Msa1346280 | 0.828325 | 9.573960e-55 | -8.615850e-47 |
| Msa0339500 | Msa1346280 | 0.832972 | 6.966641e-56 | -8.615850e-47 |
| Msa1123380 | Msa1346280 | 0.839263 | 1.759091e-57 | -8.615850e-47 |
| Msa1132840 | Msa1346280 | 0.807437 | 5.056502e-50 | -8.615850e-47 |
| Msa1139890 | Msa1346280 | 0.802671 | 5.022776e-49 | -8.615850e-47 |
| Msa1140690 | Msa1346280 | 0.811287 | 7.550085e-51 | -8.615850e-47 |
| Msa1157870 | Msa1346280 | 0.815423 | 9.317127e-52 | -8.615850e-47 |
| Msa1166560 | Msa1346280 | 0.812995 | 3.201464e-51 | -8.615850e-47 |
| Msa1186020 | Msa1346280 | 0.800714 | 1.266272e-48 | -8.615850e-47 |
| Msa1193290 | Msa1346280 | 0.820254 | 7.557142e-53 | -8.615850e-47 |
| Msa1199570 | Msa1346280 | 0.813102 | 3.033174e-51 | -8.615850e-47 |
| Msa1200890 | Msa1346280 | 0.803874 | 2.829886e-49 | -8.615850e-47 |
| Msa1209460 | Msa1346280 | 0.817009 | 4.117845e-52 | -8.615850e-47 |
| Msa1221060 | Msa1346280 | 0.831073 | 2.052184e-55 | -8.615850e-47 |
| Msa0487570 | Msa1346280 | 0.802123 | 6.512322e-49 | -8.615850e-47 |
| Msa0487630 | Msa1346280 | 0.816166 | 6.360289e-52 | -8.615850e-47 |
| Msa0498060 | Msa1346280 | 0.822661 | 2.102262e-53 | -8.615850e-47 |
| Msa0516170 | Msa1346280 | 0.811999 | 5.287085e-51 | -8.615850e-47 |
| Msa0529890 | Msa1346280 | 0.805817 | 1.111423e-49 | -8.615850e-47 |
| Msa0535040 | Msa1346280 | 0.814857 | 1.244443e-51 | -8.615850e-47 |
| Msa0547230 | Msa1346280 | 0.816030 | 6.822284e-52 | -8.615850e-47 |
| Msa0547720 | Msa1346280 | 0.813926 | 1.998322e-51 | -8.615850e-47 |
| Msa0569200 | Msa1346280 | 0.818868 | 1.565968e-52 | -8.615850e-47 |
| Msa0580370 | Msa1346280 | 0.804533 | 2.063837e-49 | -8.615850e-47 |
| Msa0843220 | Msa1346280 | 0.809754 | 1.618272e-50 | -8.615850e-47 |
| Msa0861510 | Msa1346280 | 0.807856 | 4.121078e-50 | -8.615850e-47 |
| Msa0861600 | Msa1346280 | 0.807995 | 3.848056e-50 | -8.615850e-47 |
| Msa0861870 | Msa1346280 | 0.823417 | 1.400794e-53 | -8.615850e-47 |
| Msa0876550 | Msa1346280 | 0.802112 | 6.547371e-49 | -8.615850e-47 |
| Msa0876560 | Msa1346280 | 0.823404 | 1.410334e-53 | -8.615850e-47 |
| Msa0880140 | Msa1346280 | 0.824976 | 6.027371e-54 | -8.615850e-47 |
| Msa0896540 | Msa1346280 | 0.820751 | 5.812933e-53 | -8.615850e-47 |
| Msa0902510 | Msa1346280 | 0.816325 | 5.860849e-52 | -8.615850e-47 |
| Msa0941190 | Msa1346280 | 0.818256 | 2.155352e-52 | -8.615850e-47 |
| Msa0941820 | Msa1346280 | 0.802280 | 6.046909e-49 | -8.615850e-47 |
| Msa0944700 | Msa1346280 | 0.804754 | 1.855782e-49 | -8.615850e-47 |
| Msa0945110 | Msa1346280 | 0.807598 | 4.674246e-50 | -8.615850e-47 |
| Msa0948290 | Msa1346280 | 0.801012 | 1.100730e-48 | -8.615850e-47 |
| Msa0961690 | Msa1346280 | 0.826181 | 3.123120e-54 | -8.615850e-47 |
| Msa0967380 | Msa1346280 | 0.811740 | 6.018444e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346280 | MtrunA17_Chr2g0307941 | 96.774 | 217 | 7 | 0 | 1 | 217 | 737 | 953 | 2.28e-141 | 418 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346280 | AT3G42660.1 | 42.035 | 226 | 107 | 6 | 1 | 216 | 742 | 953 | 7.86e-38 | 139 |
Find 35 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCTGAAACTTCCAAATT+TGG | 0.195450 | tig0008586:-90648 | Msa1346280:CDS |
| TGATGACGATGCTTTCAATT+TGG | 0.265584 | tig0008586:-90894 | Msa1346280:CDS |
| ATACTTCCGTTAACATTTGC+AGG | 0.278775 | tig0008586:+90299 | None:intergenic |
| AATAGATGCTTTCGATGTTT+CGG | 0.338697 | tig0008586:+90406 | None:intergenic |
| TGACAAATCGGAGCCTAGTT+TGG | 0.385690 | tig0008586:-90171 | Msa1346280:CDS |
| AATAAACCTGCAAATGTTAA+CGG | 0.395713 | tig0008586:-90305 | Msa1346280:CDS |
| CTTGTTGGTGTCACCAAACT+AGG | 0.423697 | tig0008586:+90158 | None:intergenic |
| AGAAATGGATAATGCTGGTT+TGG | 0.423905 | tig0008586:-90930 | Msa1346280:CDS |
| GGTAGAGTATCTGATGTAAC+AGG | 0.434311 | tig0008586:+90443 | None:intergenic |
| AACCTCAAGGAAAACAGTTC+TGG | 0.464256 | tig0008586:-90467 | Msa1346280:CDS |
| GAAAGGTAAGGAGGCAATGC+AGG | 0.491246 | tig0008586:-90246 | Msa1346280:CDS |
| ACACAAGAGGCAGCTAAAGA+TGG | 0.492651 | tig0008586:-90332 | Msa1346280:CDS |
| AACGATGGTGCAGATAAGTT+TGG | 0.500738 | tig0008586:+90371 | None:intergenic |
| AATGGATTGGACGGTCTTGT+TGG | 0.505573 | tig0008586:+90143 | None:intergenic |
| CAGGCTCCTCCTCATCCACT+TGG | 0.506515 | tig0008586:-90227 | Msa1346280:CDS |
| CACAAGATAGATGCATACTA+AGG | 0.512296 | tig0008586:-90865 | Msa1346280:CDS |
| GGCTCCGATTTGTCAACTCC+AGG | 0.517692 | tig0008586:+90179 | None:intergenic |
| ATGGAAGAAATGGATAATGC+TGG | 0.520031 | tig0008586:-90935 | Msa1346280:CDS |
| GTTAACGGAAGTATGAAGTC+AGG | 0.525847 | tig0008586:-90290 | Msa1346280:CDS |
| TAAGCCTGGAGTTGACAAAT+CGG | 0.527134 | tig0008586:-90183 | Msa1346280:CDS |
| ACTGAGGAACCAAGTGGATG+AGG | 0.533039 | tig0008586:+90218 | None:intergenic |
| GTAAAGTCGACAAATAAGCC+TGG | 0.535418 | tig0008586:-90197 | Msa1346280:CDS |
| AAAATTCAATGACATATTGG+AGG | 0.564152 | tig0008586:-90621 | Msa1346280:intron |
| GATGAAACAAGTGACAAGAA+AGG | 0.573820 | tig0008586:-90263 | Msa1346280:CDS |
| GTTTCGGCCTTGCTACTGCT+AGG | 0.582630 | tig0008586:+90422 | None:intergenic |
| AACAAGTGACAAGAAAGGTA+AGG | 0.591817 | tig0008586:-90258 | Msa1346280:CDS |
| TACTCTACCTAGCAGTAGCA+AGG | 0.601773 | tig0008586:-90429 | Msa1346280:CDS |
| GAGGAACCAAGTGGATGAGG+AGG | 0.613107 | tig0008586:+90221 | None:intergenic |
| TCACTGGAGAAATCAATGAA+AGG | 0.622381 | tig0008586:-90689 | Msa1346280:CDS |
| CTTATTTGTCGACTTTACTG+AGG | 0.629325 | tig0008586:+90202 | None:intergenic |
| GACTACGGAAACCAACCTCA+AGG | 0.639976 | tig0008586:-90480 | Msa1346280:CDS |
| AACGGAAGTATGAAGTCAGG+AGG | 0.653379 | tig0008586:-90287 | Msa1346280:CDS |
| AAGTGACAAGAAAGGTAAGG+AGG | 0.659061 | tig0008586:-90255 | Msa1346280:CDS |
| GACTTTACTGAGGAACCAAG+TGG | 0.673337 | tig0008586:+90212 | None:intergenic |
| AAAATATATTCATTTCATCG+AGG | 0.698984 | tig0008586:+90112 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTAACAATCTTATA+CGG | - | tig0008586:90481-90500 | Msa1346280:CDS | 10.0% |
| !! | TATATATTAACAATCTTATA+CGG | - | tig0008586:90481-90500 | Msa1346280:CDS | 10.0% |
| !! | AATAGTATTCATATTTCAAA+TGG | - | tig0008586:90308-90327 | Msa1346280:CDS | 15.0% |
| !! | TAAGATTGTTAATATATAGA+AGG | + | tig0008586:90479-90498 | None:intergenic | 15.0% |
| !! | AATAGTATTCATATTTCAAA+TGG | - | tig0008586:90308-90327 | Msa1346280:CDS | 15.0% |
| !! | TAAGATTGTTAATATATAGA+AGG | + | tig0008586:90479-90498 | None:intergenic | 15.0% |
| !!! | ACTATTCTCTTTTATAATTC+AGG | + | tig0008586:90294-90313 | None:intergenic | 20.0% |
| !! | ATATTTCAAATGGATATTTC+AGG | - | tig0008586:90318-90337 | Msa1346280:CDS | 20.0% |
| !!! | CAATATGTCATTGAATTTTT+CGG | + | tig0008586:90448-90467 | None:intergenic | 20.0% |
| !!! | TTATTTTTCTTTATGAACGA+TGG | + | tig0008586:90717-90736 | None:intergenic | 20.0% |
| !! | AAAGAAAAATAAAACACAAG+AGG | - | tig0008586:90725-90744 | Msa1346280:CDS | 20.0% |
| !!! | ACTATTCTCTTTTATAATTC+AGG | + | tig0008586:90294-90313 | None:intergenic | 20.0% |
| !! | ATATTTCAAATGGATATTTC+AGG | - | tig0008586:90318-90337 | Msa1346280:CDS | 20.0% |
| !!! | CAATATGTCATTGAATTTTT+CGG | + | tig0008586:90448-90467 | None:intergenic | 20.0% |
| !!! | TTATTTTTCTTTATGAACGA+TGG | + | tig0008586:90717-90736 | None:intergenic | 20.0% |
| !! | AAAGAAAAATAAAACACAAG+AGG | - | tig0008586:90725-90744 | Msa1346280:CDS | 20.0% |
| !!! | TATAATTCAGGTTGCAATAA+AGG | + | tig0008586:90282-90301 | None:intergenic | 25.0% |
| ! | CGAAAAATTCAATGACATAT+TGG | - | tig0008586:90446-90465 | Msa1346280:CDS | 25.0% |
| ! | AAAATTCAATGACATATTGG+AGG | - | tig0008586:90449-90468 | Msa1346280:CDS | 25.0% |
| ! | AATAAACCTGCAAATGTTAA+CGG | - | tig0008586:90765-90784 | Msa1346280:intron | 25.0% |
| !!! | TATAATTCAGGTTGCAATAA+AGG | + | tig0008586:90282-90301 | None:intergenic | 25.0% |
| ! | CGAAAAATTCAATGACATAT+TGG | - | tig0008586:90446-90465 | Msa1346280:CDS | 25.0% |
| ! | AAAATTCAATGACATATTGG+AGG | - | tig0008586:90449-90468 | Msa1346280:CDS | 25.0% |
| ! | AATAAACCTGCAAATGTTAA+CGG | - | tig0008586:90765-90784 | Msa1346280:intron | 25.0% |
| TCAGAAAAAGATGGAAGAAA+TGG | - | tig0008586:90125-90144 | Msa1346280:CDS | 30.0% | |
| !! | TTGAATTTTTCGGCCAAATT+TGG | + | tig0008586:90438-90457 | None:intergenic | 30.0% |
| TTCAAACACAAGGAATTACA+AGG | + | tig0008586:90540-90559 | None:intergenic | 30.0% | |
| ! | TAATTCCTTGTGTTTGAAAC+AGG | - | tig0008586:90542-90561 | Msa1346280:intron | 30.0% |
| CAGTGAAGTTAAAAAGACTA+CGG | - | tig0008586:90575-90594 | Msa1346280:intron | 30.0% | |
| AATAGATGCTTTCGATGTTT+CGG | + | tig0008586:90667-90686 | None:intergenic | 30.0% | |
| TCAGAAAAAGATGGAAGAAA+TGG | - | tig0008586:90125-90144 | Msa1346280:CDS | 30.0% | |
| !! | TTGAATTTTTCGGCCAAATT+TGG | + | tig0008586:90438-90457 | None:intergenic | 30.0% |
| TTCAAACACAAGGAATTACA+AGG | + | tig0008586:90540-90559 | None:intergenic | 30.0% | |
| ! | TAATTCCTTGTGTTTGAAAC+AGG | - | tig0008586:90542-90561 | Msa1346280:intron | 30.0% |
| CAGTGAAGTTAAAAAGACTA+CGG | - | tig0008586:90575-90594 | Msa1346280:intron | 30.0% | |
| AATAGATGCTTTCGATGTTT+CGG | + | tig0008586:90667-90686 | None:intergenic | 30.0% | |
| ATGGAAGAAATGGATAATGC+TGG | - | tig0008586:90135-90154 | Msa1346280:CDS | 35.0% | |
| ! | AGAAATGGATAATGCTGGTT+TGG | - | tig0008586:90140-90159 | Msa1346280:CDS | 35.0% |
| ! | TGATGACGATGCTTTCAATT+TGG | - | tig0008586:90176-90195 | Msa1346280:CDS | 35.0% |
| CACAAGATAGATGCATACTA+AGG | - | tig0008586:90205-90224 | Msa1346280:CDS | 35.0% | |
| TCACTGGAGAAATCAATGAA+AGG | - | tig0008586:90381-90400 | Msa1346280:CDS | 35.0% | |
| !! | AGCTCTGAAACTTCCAAATT+TGG | - | tig0008586:90422-90441 | Msa1346280:CDS | 35.0% |
| CAATCTTATACGGTACAGAA+AGG | - | tig0008586:90491-90510 | Msa1346280:CDS | 35.0% | |
| ATACTTCCGTTAACATTTGC+AGG | + | tig0008586:90774-90793 | None:intergenic | 35.0% | |
| GATGAAACAAGTGACAAGAA+AGG | - | tig0008586:90807-90826 | Msa1346280:intron | 35.0% | |
| AACAAGTGACAAGAAAGGTA+AGG | - | tig0008586:90812-90831 | Msa1346280:intron | 35.0% | |
| !! | CTTATTTGTCGACTTTACTG+AGG | + | tig0008586:90871-90890 | None:intergenic | 35.0% |
| !! | GACTTCAAAAATGGATTGGA+CGG | + | tig0008586:90939-90958 | None:intergenic | 35.0% |
| TTCATCGAGGACTTCAAAAA+TGG | + | tig0008586:90948-90967 | None:intergenic | 35.0% | |
| ATGGAAGAAATGGATAATGC+TGG | - | tig0008586:90135-90154 | Msa1346280:CDS | 35.0% | |
| ! | AGAAATGGATAATGCTGGTT+TGG | - | tig0008586:90140-90159 | Msa1346280:CDS | 35.0% |
| ! | TGATGACGATGCTTTCAATT+TGG | - | tig0008586:90176-90195 | Msa1346280:CDS | 35.0% |
| CACAAGATAGATGCATACTA+AGG | - | tig0008586:90205-90224 | Msa1346280:CDS | 35.0% | |
| TCACTGGAGAAATCAATGAA+AGG | - | tig0008586:90381-90400 | Msa1346280:CDS | 35.0% | |
| !! | AGCTCTGAAACTTCCAAATT+TGG | - | tig0008586:90422-90441 | Msa1346280:CDS | 35.0% |
| CAATCTTATACGGTACAGAA+AGG | - | tig0008586:90491-90510 | Msa1346280:CDS | 35.0% | |
| ATACTTCCGTTAACATTTGC+AGG | + | tig0008586:90774-90793 | None:intergenic | 35.0% | |
| GATGAAACAAGTGACAAGAA+AGG | - | tig0008586:90807-90826 | Msa1346280:intron | 35.0% | |
| AACAAGTGACAAGAAAGGTA+AGG | - | tig0008586:90812-90831 | Msa1346280:intron | 35.0% | |
| !! | CTTATTTGTCGACTTTACTG+AGG | + | tig0008586:90871-90890 | None:intergenic | 35.0% |
| !! | GACTTCAAAAATGGATTGGA+CGG | + | tig0008586:90939-90958 | None:intergenic | 35.0% |
| TTCATCGAGGACTTCAAAAA+TGG | + | tig0008586:90948-90967 | None:intergenic | 35.0% | |
| AGGTTGCAATAAAGGAAGAG+AGG | + | tig0008586:90274-90293 | None:intergenic | 40.0% | |
| ! | ACTTGTCAAGCTTTTGTCAC+TGG | - | tig0008586:90365-90384 | Msa1346280:CDS | 40.0% |
| CCTTTCCTGTTTCAAACACA+AGG | + | tig0008586:90550-90569 | None:intergenic | 40.0% | |
| ! | CCTTGTGTTTGAAACAGGAA+AGG | - | tig0008586:90547-90566 | Msa1346280:intron | 40.0% |
| ! | AGAACTGTTTTCCTTGAGGT+TGG | + | tig0008586:90604-90623 | None:intergenic | 40.0% |
| AACCTCAAGGAAAACAGTTC+TGG | - | tig0008586:90603-90622 | Msa1346280:intron | 40.0% | |
| ! | GGTAGAGTATCTGATGTAAC+AGG | + | tig0008586:90630-90649 | None:intergenic | 40.0% |
| AACGATGGTGCAGATAAGTT+TGG | + | tig0008586:90702-90721 | None:intergenic | 40.0% | |
| ! | GTTAACGGAAGTATGAAGTC+AGG | - | tig0008586:90780-90799 | Msa1346280:intron | 40.0% |
| AAGTGACAAGAAAGGTAAGG+AGG | - | tig0008586:90815-90834 | Msa1346280:intron | 40.0% | |
| GTAAAGTCGACAAATAAGCC+TGG | - | tig0008586:90873-90892 | Msa1346280:CDS | 40.0% | |
| TAAGCCTGGAGTTGACAAAT+CGG | - | tig0008586:90887-90906 | Msa1346280:CDS | 40.0% | |
| CGAGGACTTCAAAAATGGAT+TGG | + | tig0008586:90943-90962 | None:intergenic | 40.0% | |
| TGAAGTCCTCGATGAAATGA+AGG | - | tig0008586:90952-90971 | Msa1346280:exon | 40.0% | |
| AGGTTGCAATAAAGGAAGAG+AGG | + | tig0008586:90274-90293 | None:intergenic | 40.0% | |
| ! | ACTTGTCAAGCTTTTGTCAC+TGG | - | tig0008586:90365-90384 | Msa1346280:CDS | 40.0% |
| CCTTTCCTGTTTCAAACACA+AGG | + | tig0008586:90550-90569 | None:intergenic | 40.0% | |
| ! | CCTTGTGTTTGAAACAGGAA+AGG | - | tig0008586:90547-90566 | Msa1346280:intron | 40.0% |
| ! | AGAACTGTTTTCCTTGAGGT+TGG | + | tig0008586:90604-90623 | None:intergenic | 40.0% |
| AACCTCAAGGAAAACAGTTC+TGG | - | tig0008586:90603-90622 | Msa1346280:intron | 40.0% | |
| ! | GGTAGAGTATCTGATGTAAC+AGG | + | tig0008586:90630-90649 | None:intergenic | 40.0% |
| AACGATGGTGCAGATAAGTT+TGG | + | tig0008586:90702-90721 | None:intergenic | 40.0% | |
| ! | GTTAACGGAAGTATGAAGTC+AGG | - | tig0008586:90780-90799 | Msa1346280:intron | 40.0% |
| AAGTGACAAGAAAGGTAAGG+AGG | - | tig0008586:90815-90834 | Msa1346280:intron | 40.0% | |
| GTAAAGTCGACAAATAAGCC+TGG | - | tig0008586:90873-90892 | Msa1346280:CDS | 40.0% | |
| TAAGCCTGGAGTTGACAAAT+CGG | - | tig0008586:90887-90906 | Msa1346280:CDS | 40.0% | |
| CGAGGACTTCAAAAATGGAT+TGG | + | tig0008586:90943-90962 | None:intergenic | 40.0% | |
| ! | GTCCAGAACTGTTTTCCTTG+AGG | + | tig0008586:90608-90627 | None:intergenic | 45.0% |
| TACTCTACCTAGCAGTAGCA+AGG | - | tig0008586:90641-90660 | Msa1346280:CDS | 45.0% | |
| ACACAAGAGGCAGCTAAAGA+TGG | - | tig0008586:90738-90757 | Msa1346280:intron | 45.0% | |
| ! | AACGGAAGTATGAAGTCAGG+AGG | - | tig0008586:90783-90802 | Msa1346280:intron | 45.0% |
| GACTTTACTGAGGAACCAAG+TGG | + | tig0008586:90861-90880 | None:intergenic | 45.0% | |
| TGACAAATCGGAGCCTAGTT+TGG | - | tig0008586:90899-90918 | Msa1346280:CDS | 45.0% | |
| !! | CTTGTTGGTGTCACCAAACT+AGG | + | tig0008586:90915-90934 | None:intergenic | 45.0% |
| !! | AATGGATTGGACGGTCTTGT+TGG | + | tig0008586:90930-90949 | None:intergenic | 45.0% |
| ! | GTCCAGAACTGTTTTCCTTG+AGG | + | tig0008586:90608-90627 | None:intergenic | 45.0% |
| TACTCTACCTAGCAGTAGCA+AGG | - | tig0008586:90641-90660 | Msa1346280:CDS | 45.0% | |
| ACACAAGAGGCAGCTAAAGA+TGG | - | tig0008586:90738-90757 | Msa1346280:intron | 45.0% | |
| ! | AACGGAAGTATGAAGTCAGG+AGG | - | tig0008586:90783-90802 | Msa1346280:intron | 45.0% |
| GACTTTACTGAGGAACCAAG+TGG | + | tig0008586:90861-90880 | None:intergenic | 45.0% | |
| TGACAAATCGGAGCCTAGTT+TGG | - | tig0008586:90899-90918 | Msa1346280:CDS | 45.0% | |
| !! | CTTGTTGGTGTCACCAAACT+AGG | + | tig0008586:90915-90934 | None:intergenic | 45.0% |
| !! | AATGGATTGGACGGTCTTGT+TGG | + | tig0008586:90930-90949 | None:intergenic | 45.0% |
| GACTACGGAAACCAACCTCA+AGG | - | tig0008586:90590-90609 | Msa1346280:intron | 50.0% | |
| GAAAGGTAAGGAGGCAATGC+AGG | - | tig0008586:90824-90843 | Msa1346280:intron | 50.0% | |
| ACTGAGGAACCAAGTGGATG+AGG | + | tig0008586:90855-90874 | None:intergenic | 50.0% | |
| GACTACGGAAACCAACCTCA+AGG | - | tig0008586:90590-90609 | Msa1346280:intron | 50.0% | |
| GAAAGGTAAGGAGGCAATGC+AGG | - | tig0008586:90824-90843 | Msa1346280:intron | 50.0% | |
| ACTGAGGAACCAAGTGGATG+AGG | + | tig0008586:90855-90874 | None:intergenic | 50.0% | |
| GTTTCGGCCTTGCTACTGCT+AGG | + | tig0008586:90651-90670 | None:intergenic | 55.0% | |
| GAGGAACCAAGTGGATGAGG+AGG | + | tig0008586:90852-90871 | None:intergenic | 55.0% | |
| ! | GGCTCCGATTTGTCAACTCC+AGG | + | tig0008586:90894-90913 | None:intergenic | 55.0% |
| GTTTCGGCCTTGCTACTGCT+AGG | + | tig0008586:90651-90670 | None:intergenic | 55.0% | |
| GAGGAACCAAGTGGATGAGG+AGG | + | tig0008586:90852-90871 | None:intergenic | 55.0% | |
| ! | GGCTCCGATTTGTCAACTCC+AGG | + | tig0008586:90894-90913 | None:intergenic | 55.0% |
| CAGGCTCCTCCTCATCCACT+TGG | - | tig0008586:90843-90862 | Msa1346280:CDS | 60.0% | |
| CAGGCTCCTCCTCATCCACT+TGG | - | tig0008586:90843-90862 | Msa1346280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0008586 | gene | 90121 | 90971 | 90121 | ID=Msa1346280;Name=Msa1346280 |
| tig0008586 | mRNA | 90121 | 90971 | 90121 | ID=Msa1346280-mRNA-1;Parent=Msa1346280;Name=Msa1346280-mRNA-1;_AED=0.01;_eAED=0.01;_QI=14|1|0.66|1|1|1|3|0|217 |
| tig0008586 | exon | 90121 | 90528 | 90121 | ID=Msa1346280-mRNA-1:exon:5432;Parent=Msa1346280-mRNA-1 |
| tig0008586 | exon | 90622 | 90752 | 90622 | ID=Msa1346280-mRNA-1:exon:5431;Parent=Msa1346280-mRNA-1 |
| tig0008586 | exon | 90843 | 90971 | 90843 | ID=Msa1346280-mRNA-1:exon:5430;Parent=Msa1346280-mRNA-1 |
| tig0008586 | five_prime_UTR | 90958 | 90971 | 90958 | ID=Msa1346280-mRNA-1:five_prime_utr;Parent=Msa1346280-mRNA-1 |
| tig0008586 | CDS | 90843 | 90957 | 90843 | ID=Msa1346280-mRNA-1:cds;Parent=Msa1346280-mRNA-1 |
| tig0008586 | CDS | 90622 | 90752 | 90622 | ID=Msa1346280-mRNA-1:cds;Parent=Msa1346280-mRNA-1 |
| tig0008586 | CDS | 90121 | 90528 | 90121 | ID=Msa1346280-mRNA-1:cds;Parent=Msa1346280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
