AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0193600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193600 MtrunA17_Chr2g0283871 97.115 312 9 0 1 312 1 312 0.0 629
Msa0193600 MtrunA17_Chr4g0041151 50.000 318 106 7 11 311 19 300 2.21e-80 246
Msa0193600 MtrunA17_Chr8g0344681 40.728 302 142 10 19 309 64 339 5.66e-53 177
Msa0193600 MtrunA17_Chr2g0325841 32.075 371 162 9 11 299 34 396 1.19e-31 125
Msa0193600 MtrunA17_Chr1g0179531 37.624 101 57 3 23 122 133 228 8.26e-17 80.9
Msa0193600 MtrunA17_Chr6g0485241 36.170 94 55 2 23 115 130 219 2.48e-16 79.0
Msa0193600 MtrunA17_Chr1g0164461 36.735 98 55 2 18 115 33 123 3.25e-14 70.1
Msa0193600 MtrunA17_Chr3g0082261 37.755 98 54 2 18 115 33 123 7.18e-14 71.2
Msa0193600 MtrunA17_Chr2g0331931 36.752 117 67 3 14 128 263 374 1.70e-12 67.8
Msa0193600 MtrunA17_Chr4g0066271 31.915 94 62 2 22 114 116 208 3.43e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193600 AT3G58630.2 42.857 336 131 9 3 313 2 301 5.26e-67 212
Msa0193600 AT3G58630.1 42.857 336 131 9 3 313 2 301 9.62e-67 212
Msa0193600 AT3G14180.1 33.333 345 157 10 19 305 80 409 3.31e-48 167
Msa0193600 AT3G11100.1 37.500 296 119 7 19 314 18 247 2.56e-46 157
Msa0193600 AT5G05550.3 38.176 296 112 8 19 314 20 244 1.03e-45 155
Msa0193600 AT5G05550.1 38.176 296 112 8 19 314 20 244 1.44e-45 155
Msa0193600 AT5G05550.2 39.446 289 104 9 19 307 20 237 1.44e-44 152
Msa0193600 AT1G54060.1 51.020 98 44 2 19 116 90 183 1.99e-21 94.0
Msa0193600 AT3G54390.1 27.451 306 168 12 5 303 16 274 2.59e-20 89.7
Msa0193600 AT3G54390.2 27.451 306 168 12 5 303 32 290 3.94e-20 89.4
Msa0193600 AT3G10030.2 35.433 127 74 3 23 145 161 283 9.24e-20 90.1
Msa0193600 AT3G10030.1 35.433 127 74 3 23 145 161 283 9.59e-20 90.1
Msa0193600 AT3G24490.1 37.634 93 53 2 23 115 90 177 4.16e-16 78.2
Msa0193600 AT2G44730.1 22.684 313 197 10 13 300 56 348 4.91e-13 69.3

Find 125 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTACTTAAGCCTAATT+TGG 0.138542 2_1:-9425573 Msa0193600:three_prime_UTR
AGAGAGAATGAGAAGAAATT+AGG 0.167345 2_1:+9430259 None:intergenic
AATTTATCGAGGAGTAATTT+TGG 0.217786 2_1:-9425652 Msa0193600:three_prime_UTR
GCAGAGGATGCAGATGTTTA+TGG 0.218617 2_1:-9429347 Msa0193600:CDS
AATCCGGCATCGGAGAAATT+AGG 0.223362 2_1:+9430220 None:intergenic
GGTACGGTCGCCGGTGTATT+GGG 0.229132 2_1:+9430337 None:intergenic
CATCGGAAATTTGCTAATTC+TGG 0.236718 2_1:-9429775 Msa0193600:CDS
AGTTGCTGAATTAATTTATA+AGG 0.256607 2_1:+9425592 None:intergenic
CGGTACGGTCGCCGGTGTAT+TGG 0.291738 2_1:+9430336 None:intergenic
ATCGGAACACTCTAATGTTT+TGG 0.311243 2_1:-9425736 Msa0193600:three_prime_UTR
GAGAGAATGAGAAGAAATTA+GGG 0.314885 2_1:+9430260 None:intergenic
ACTGAGGCAGATGGTGGATT+TGG 0.320650 2_1:-9429407 Msa0193600:CDS
AACTTCTTAGCACTGAAATT+AGG 0.324747 2_1:+9429859 None:intergenic
GAAGTGGATGAAGGGGATAA+AGG 0.329017 2_1:-9429505 Msa0193600:CDS
GTAGAGGAAGAGGAAGGGAG+GGG 0.346774 2_1:-9429532 Msa0193600:CDS
AAGTAGAGGAAGAGGAAGGG+AGG 0.369131 2_1:-9429534 Msa0193600:CDS
CACTGAAACCGTTGCCCGCT+TGG 0.374209 2_1:+9425765 None:intergenic
TTCCACTCTCGTCGATGCAT+GGG 0.378747 2_1:-9430124 Msa0193600:CDS
GTTGCTGAATTAATTTATAA+GGG 0.378967 2_1:+9425593 None:intergenic
AAGTGGATGAAGGGGATAAA+GGG 0.379670 2_1:-9429504 Msa0193600:CDS
TCTGTGTGGCAGCCCAAATT+AGG 0.380646 2_1:+9425560 None:intergenic
GACCAACAATCCTCGCGAAC+GGG 0.390355 2_1:+9430159 None:intergenic
GCATCGGAGAAATTAGGGTT+AGG 0.393814 2_1:+9430226 None:intergenic
CTTCCACTCTCGTCGATGCA+TGG 0.395037 2_1:-9430125 Msa0193600:CDS
AGAGGTGGAAGTAGAGGAAG+AGG 0.405371 2_1:-9429542 Msa0193600:CDS
GGAGGAAGTTGAGGAGGAAG+AGG 0.407734 2_1:-9429560 Msa0193600:CDS
GTGGAATGTACCGCAATTGC+AGG 0.408758 2_1:+9429739 None:intergenic
GCGAAGGCGATAGAGAGTTT+TGG 0.411580 2_1:-9429460 Msa0193600:CDS
ATCCGGCATCGGAGAAATTA+GGG 0.411785 2_1:+9430221 None:intergenic
ATTAAGCGTGGAAAACCATC+TGG 0.413416 2_1:-9429301 Msa0193600:CDS
ATCAATTTCTTCACCGGTGG+CGG 0.426236 2_1:-9429836 Msa0193600:CDS
AACCCTAATTTCTCCGATGC+CGG 0.432438 2_1:-9430223 Msa0193600:exon
TAGAGGAAGAGGAAGGGAGG+GGG 0.434612 2_1:-9429531 Msa0193600:CDS
AGCTGCAGCCGCTGCTGCTG+CGG 0.440024 2_1:-9429617 Msa0193600:CDS
AAAGAATCGTGGTGAAAATC+CGG 0.442007 2_1:+9430204 None:intergenic
GGAAAACCATCTGGGTCTAA+TGG 0.443061 2_1:-9429292 Msa0193600:CDS
GGGGAGTGAAGTGGATGAAG+GGG 0.444075 2_1:-9429512 Msa0193600:CDS
GTAATCTTCGTCAGAAAGAT+TGG 0.446554 2_1:-9430074 Msa0193600:CDS
AAGGGGATAAAGGGAGAGAA+GGG 0.448917 2_1:-9429495 Msa0193600:CDS
GAGAGAAGGGATGAAGAGGT+TGG 0.450498 2_1:-9429482 Msa0193600:CDS
TCCCCGTTCGCGAGGATTGT+TGG 0.451755 2_1:-9430161 Msa0193600:CDS
GGCGGTGACACCGTCGCCTC+CGG 0.452209 2_1:-9429818 Msa0193600:CDS
AAGATATAGAAAAGGTTAAA+CGG 0.453825 2_1:+9430301 None:intergenic
ATCAGCTTCCGCAGCAGCAG+CGG 0.459138 2_1:+9429609 None:intergenic
GTGGAAGTAGAGGAAGAGGA+AGG 0.466313 2_1:-9429538 Msa0193600:CDS
TGATGAGGTGGAGGAAGTTG+AGG 0.467170 2_1:-9429569 Msa0193600:CDS
AGTAGAGGAAGAGGAAGGGA+GGG 0.467532 2_1:-9429533 Msa0193600:CDS
GAAGTTATCAATTTCTTCAC+CGG 0.471334 2_1:-9429842 Msa0193600:CDS
GATGCTGTTAACGCTCTTCA+TGG 0.472381 2_1:-9430039 Msa0193600:CDS
GCTAGGGTTACGGAATCTAA+TGG 0.474097 2_1:-9429934 Msa0193600:CDS
ACTGCTACGGTGATGGATGA+TGG 0.479955 2_1:-9429667 Msa0193600:CDS
GGAGGAAGAGGTGGAAGTAG+AGG 0.482006 2_1:-9429548 Msa0193600:CDS
GTACGGTCGCCGGTGTATTG+GGG 0.487704 2_1:+9430338 None:intergenic
GAAGGGGATAAAGGGAGAGA+AGG 0.489329 2_1:-9429496 Msa0193600:CDS
GGAAGTTGAGGAGGAAGAGG+TGG 0.492049 2_1:-9429557 Msa0193600:CDS
CATCGGAGAAATTAGGGTTA+GGG 0.496578 2_1:+9430227 None:intergenic
AAGGGAGAGAAGGGATGAAG+AGG 0.497380 2_1:-9429486 Msa0193600:CDS
TATGGATACTCAAGTTCAGC+TGG 0.498348 2_1:-9429329 Msa0193600:CDS
TGCTGCTGCGGAAGCTGATG+AGG 0.500517 2_1:-9429605 Msa0193600:CDS
TGGAAGTAGAGGAAGAGGAA+GGG 0.505354 2_1:-9429537 Msa0193600:CDS
CGGAAATTTGCTAATTCTGG+TGG 0.506455 2_1:-9429772 Msa0193600:CDS
CTCTTCCGTTGATTCCTCAT+CGG 0.506683 2_1:-9429792 Msa0193600:CDS
CGTGGCTGCGGCTACTGCTA+CGG 0.507470 2_1:-9429680 Msa0193600:CDS
ACTGTACTTAAGCCTAATTT+GGG 0.513594 2_1:-9425572 Msa0193600:three_prime_UTR
TGCGGCTACTGCTACGGTGA+TGG 0.518450 2_1:-9429674 Msa0193600:CDS
GGCGACGGTGTCACCGCCAC+CGG 0.524853 2_1:+9429823 None:intergenic
TACGGTCGCCGGTGTATTGG+GGG 0.535195 2_1:+9430339 None:intergenic
GAATTATTCTGCCGTGGCTG+CGG 0.538446 2_1:-9429692 Msa0193600:CDS
TGAGGTGGAGGAAGTTGAGG+AGG 0.539115 2_1:-9429566 Msa0193600:CDS
TGGTGAAATGTATGAGAGAG+TGG 0.540008 2_1:-9429440 Msa0193600:CDS
CTGCTACGGTGATGGATGAT+GGG 0.544392 2_1:-9429666 Msa0193600:CDS
TGATTACACGGTACGGTCGC+CGG 0.549018 2_1:+9430328 None:intergenic
GGAAGAGCCACCGGAGGCGA+CGG 0.553904 2_1:+9429808 None:intergenic
GCGGGCAACGGTTTCAGTGA+TGG 0.554914 2_1:-9425761 Msa0193600:three_prime_UTR
TGTATAATAGCTAGCCAAGC+GGG 0.557047 2_1:-9425779 Msa0193600:three_prime_UTR
ACAATCCTCGCGAACGGGGA+CGG 0.571999 2_1:+9430164 None:intergenic
TCGTCGATGCATGGGGTCGT+CGG 0.574131 2_1:-9430116 Msa0193600:CDS
CGTAGCAGTAGCCGCAGCCA+CGG 0.576525 2_1:+9429681 None:intergenic
ACGGTTTCAGTGATGGTGAT+CGG 0.576591 2_1:-9425754 Msa0193600:three_prime_UTR
TGACCAACAATCCTCGCGAA+CGG 0.577799 2_1:+9430158 None:intergenic
CTAAAGATCTTGAAGTGCAG+AGG 0.579375 2_1:-9429363 Msa0193600:CDS
TTAAACGGCGTGTGATTACA+CGG 0.580718 2_1:+9430316 None:intergenic
GGAATCAACGGAAGAGCCAC+CGG 0.582868 2_1:+9429799 None:intergenic
TGATGAGGATGATGAGGTGG+AGG 0.584183 2_1:-9429578 Msa0193600:CDS
ATCTCACCATTAGACCCAGA+TGG 0.584691 2_1:+9429286 None:intergenic
TTATTCATCACCTGCAATTG+CGG 0.591019 2_1:-9429749 Msa0193600:CDS
ATAGCTAGCCAAGCGGGCAA+CGG 0.600269 2_1:-9425773 Msa0193600:three_prime_UTR
CGAACGGGGACGGTGCGTGA+CGG 0.602447 2_1:+9430174 None:intergenic
GCAGAATAATTCCTCTTCTG+AGG 0.603793 2_1:+9429703 None:intergenic
TGGTGGATTTGGAGAAACAA+AGG 0.604782 2_1:-9429396 Msa0193600:CDS
ACGGGGACGGTGCGTGACGG+TGG 0.605580 2_1:+9430177 None:intergenic
ACCCCATGCATCGACGAGAG+TGG 0.606737 2_1:+9430122 None:intergenic
TTCAGCTGATACTGTCATGA+GGG 0.607610 2_1:-9425688 Msa0193600:three_prime_UTR
ACGCACCGTCCCCGTTCGCG+AGG 0.609985 2_1:-9430169 Msa0193600:CDS
TGATGATGAGGATGATGAGG+TGG 0.613041 2_1:-9429581 Msa0193600:CDS
GAAGAGGAATTATTCTGCCG+TGG 0.613185 2_1:-9429698 Msa0193600:CDS
TCGTGGTGAAAATCCGGCAT+CGG 0.613818 2_1:+9430210 None:intergenic
ACAGAAACTGAGGCAGATGG+TGG 0.614677 2_1:-9429413 Msa0193600:CDS
GGTGACACCGTCGCCTCCGG+TGG 0.615400 2_1:-9429815 Msa0193600:CDS
AATTTCCGATGAGGAATCAA+CGG 0.616061 2_1:+9429787 None:intergenic
AGGGATGAAGAGGTTGGCGA+AGG 0.617802 2_1:-9429476 Msa0193600:CDS
CGGTGGCGTTACCTCAGAAG+AGG 0.617929 2_1:-9429714 Msa0193600:CDS
CTTCAGCTGATACTGTCATG+AGG 0.627950 2_1:-9425689 Msa0193600:three_prime_UTR
GTTATCAATTTCTTCACCGG+TGG 0.628483 2_1:-9429839 Msa0193600:CDS
GAGTGGAAGAACAGAAACTG+AGG 0.631673 2_1:-9429423 Msa0193600:CDS
CGGCGTGTGATTACACGGTA+CGG 0.633049 2_1:+9430321 None:intergenic
AGAACAGAAACTGAGGCAGA+TGG 0.635950 2_1:-9429416 Msa0193600:CDS
TCCACTCTCGTCGATGCATG+GGG 0.638750 2_1:-9430123 Msa0193600:CDS
TGCGGTACATTCCACCGCGG+TGG 0.640964 2_1:-9429731 Msa0193600:CDS
GAATTAGCAAATTTCCGATG+AGG 0.643473 2_1:+9429778 None:intergenic
CTGAGGTAACGCCACCGCGG+TGG 0.646102 2_1:+9429720 None:intergenic
TTAAGCGTGGAAAACCATCT+GGG 0.647441 2_1:-9429300 Msa0193600:CDS
ATCAACGGAAGAGCCACCGG+AGG 0.652573 2_1:+9429802 None:intergenic
AGCTGATGAGGATGATGATG+AGG 0.655311 2_1:-9429593 Msa0193600:CDS
ACCAACAATCCTCGCGAACG+GGG 0.660501 2_1:+9430160 None:intergenic
CTTTCTGACGAAGATTACCA+CGG 0.666897 2_1:+9430079 None:intergenic
GGATGATGATGAGGATGATG+AGG 0.668977 2_1:-9429584 Msa0193600:CDS
TCTCTAAATAGAATTTATCG+AGG 0.684469 2_1:-9425663 Msa0193600:three_prime_UTR
ACATTAGAGTCAATTCTGTG+TGG 0.702246 2_1:+9425546 None:intergenic
ATGTATAATAGCTAGCCAAG+CGG 0.714706 2_1:-9425780 Msa0193600:three_prime_UTR
CGGTATCTTGAACTCAACCG+TGG 0.727584 2_1:-9430096 Msa0193600:CDS
CAGCTGGAGAGAATTAAGCG+TGG 0.736726 2_1:-9429313 Msa0193600:CDS
CTTCTGAGGTAACGCCACCG+CGG 0.741340 2_1:+9429717 None:intergenic
ACGGTGGTGTGAAAGAATCG+TGG 0.749435 2_1:+9430193 None:intergenic
AATTGCGGTACATTCCACCG+CGG 0.821763 2_1:-9429734 Msa0193600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAAATAGATTTTTTTTAA+TGG - chr2_1:9427363-9427382 Msa0193600:intron 10.0%
!! TTTATAATACATTTATAGTT+AGG - chr2_1:9429642-9429661 Msa0193600:CDS 10.0%
!! AAATTAAAATAGTGTAATTC+AGG + chr2_1:9427242-9427261 None:intergenic 15.0%
!! TACATGTAAATAGTTTAAAT+AGG - chr2_1:9427954-9427973 Msa0193600:intron 15.0%
!! ATTAGATTTATATCATTTGA+AGG + chr2_1:9428019-9428038 None:intergenic 15.0%
!! TAAATTATGTTTATTGAACT+GGG + chr2_1:9429180-9429199 None:intergenic 15.0%
!! TTCAATAAACATAATTTAGT+GGG - chr2_1:9429182-9429201 Msa0193600:intron 15.0%
!! TGTATTATAAATAAGTAAAC+TGG + chr2_1:9429633-9429652 None:intergenic 15.0%
!! GAAATAAACATTAAAACATA+TGG + chr2_1:9429776-9429795 None:intergenic 15.0%
!! AAGATATAGAAAAGGTTAAA+CGG + chr2_1:9425558-9425577 None:intergenic 20.0%
!! AAGAGAAAAAGATATAGAAA+AGG + chr2_1:9425566-9425585 None:intergenic 20.0%
!!! TACGATTAAGAAAAAGTATA+AGG - chr2_1:9425891-9425910 Msa0193600:intron 20.0%
!!! TGCTTTGATAAGTTTATTTT+TGG - chr2_1:9426768-9426787 Msa0193600:intron 20.0%
!!! GATAAGTTTATTTTTGGTTT+AGG - chr2_1:9426774-9426793 Msa0193600:intron 20.0%
!!! GTTTTAGTTTACTATTTTAC+AGG + chr2_1:9427470-9427489 None:intergenic 20.0%
!! TAATTATCTACATTCTTACT+TGG + chr2_1:9428060-9428079 None:intergenic 20.0%
!! AGAATTAGTTAAAGAAAACA+AGG + chr2_1:9428842-9428861 None:intergenic 20.0%
!!! CATTTTGATAAAAAGATGTA+AGG - chr2_1:9429078-9429097 Msa0193600:intron 20.0%
!!! ATAAGGTAAGTTTTAATTAG+AGG + chr2_1:9429154-9429173 None:intergenic 20.0%
!! CTAAATTATGTTTATTGAAC+TGG + chr2_1:9429181-9429200 None:intergenic 20.0%
!! GTTCAATAAACATAATTTAG+TGG - chr2_1:9429181-9429200 Msa0193600:intron 20.0%
!!! GAAAACCTGTATTTTAATTT+AGG + chr2_1:9429699-9429718 None:intergenic 20.0%
!! GTTGCTGAATTAATTTATAA+GGG + chr2_1:9430266-9430285 None:intergenic 20.0%
!! AGTTGCTGAATTAATTTATA+AGG + chr2_1:9430267-9430286 None:intergenic 20.0%
!!! ATGGTGTTTTGAATTCTAAT+TGG - chr2_1:9425941-9425960 Msa0193600:intron 25.0%
! TATCAAATCACAAGCTAAAA+GGG + chr2_1:9426637-9426656 None:intergenic 25.0%
! TTATCAAATCACAAGCTAAA+AGG + chr2_1:9426638-9426657 None:intergenic 25.0%
!!! TTTGTTTTTCAATGAGTGAA+TGG - chr2_1:9426694-9426713 Msa0193600:intron 25.0%
! TTGGTTTAGGAAAATAAATG+TGG - chr2_1:9426787-9426806 Msa0193600:intron 25.0%
!! AATGAATGAATGCTTTTGAT+TGG - chr2_1:9426845-9426864 Msa0193600:intron 25.0%
! CACAAAACATAAAGAACAAA+AGG + chr2_1:9427055-9427074 None:intergenic 25.0%
!! CTTTTGTTCTTTATGTTTTG+TGG - chr2_1:9427053-9427072 Msa0193600:intron 25.0%
!!! GTGTATTTTTGACTTTTAGA+TGG - chr2_1:9427185-9427204 Msa0193600:intron 25.0%
!! TCTATAACCATTTTGCAATA+AGG - chr2_1:9427293-9427312 Msa0193600:intron 25.0%
! TCTTAACTCTTATGTACAAT+GGG - chr2_1:9427332-9427351 Msa0193600:intron 25.0%
!! GCGTGTTTCTATAAATATAA+GGG - chr2_1:9427774-9427793 Msa0193600:intron 25.0%
! GAATATGTATATTTGACACA+AGG + chr2_1:9427848-9427867 None:intergenic 25.0%
!! AAGTCCTGAAATATTTTCAA+AGG - chr2_1:9427981-9428000 Msa0193600:intron 25.0%
!! TATGCCTTTGAAAATATTTC+AGG + chr2_1:9427988-9428007 None:intergenic 25.0%
! ATAAGTAAAAATGTTCCTTG+AGG - chr2_1:9428132-9428151 Msa0193600:intron 25.0%
! TAAGTAAAAATGTTCCTTGA+GGG - chr2_1:9428133-9428152 Msa0193600:intron 25.0%
! ATTCTATGAAATCATCTGTT+TGG - chr2_1:9428857-9428876 Msa0193600:intron 25.0%
! CGTGATTATTAAAAGAGATT+TGG - chr2_1:9428941-9428960 Msa0193600:intron 25.0%
! ATAAACATAATTTAGTGGGA+TGG - chr2_1:9429186-9429205 Msa0193600:intron 25.0%
!!! TTTTGTTTTCTGTTGCTATT+TGG - chr2_1:9429318-9429337 Msa0193600:CDS 25.0%
! ATTATGGATAAGTAGTTAGA+GGG - chr2_1:9429366-9429385 Msa0193600:CDS 25.0%
! AGTCTCCTAAATTAAAATAC+AGG - chr2_1:9429691-9429710 Msa0193600:CDS 25.0%
! ATTGTTCTTAAATTGTTGCA+AGG - chr2_1:9429962-9429981 Msa0193600:CDS 25.0%
!!! TAATGTTTTGGTTATGATCA+CGG - chr2_1:9430132-9430151 Msa0193600:CDS 25.0%
! TCTCTAAATAGAATTTATCG+AGG - chr2_1:9430193-9430212 Msa0193600:CDS 25.0%
!! AATTTATCGAGGAGTAATTT+TGG - chr2_1:9430204-9430223 Msa0193600:CDS 25.0%
GAGAGAATGAGAAGAAATTA+GGG + chr2_1:9425599-9425618 None:intergenic 30.0%
AGAGAGAATGAGAAGAAATT+AGG + chr2_1:9425600-9425619 None:intergenic 30.0%
AGTATAAGGTTGAAAAAGCT+AGG - chr2_1:9425905-9425924 Msa0193600:intron 30.0%
GTATAAGGTTGAAAAAGCTA+GGG - chr2_1:9425906-9425925 Msa0193600:intron 30.0%
!!! CTAATTGGCCTTTTTTTGAA+CGG - chr2_1:9425956-9425975 Msa0193600:intron 30.0%
ACATCTAACCGTTCAAAAAA+AGG + chr2_1:9425967-9425986 None:intergenic 30.0%
! AACTTCTTAGCACTGAAATT+AGG + chr2_1:9426000-9426019 None:intergenic 30.0%
GAAGTTATCAATTTCTTCAC+CGG - chr2_1:9426014-9426033 Msa0193600:intron 30.0%
!! TTTTAGGAGGAATTATTCTG+CGG - chr2_1:9426215-9426234 Msa0193600:intron 30.0%
ATCAAATCACAAGCTAAAAG+GGG + chr2_1:9426636-9426655 None:intergenic 30.0%
! AAACAAAAAACTAAGCACTG+CGG + chr2_1:9426675-9426694 None:intergenic 30.0%
AGAACAAAAGGTTGTTGTAT+TGG + chr2_1:9427043-9427062 None:intergenic 30.0%
! TGTTCTTTATGTTTTGTGGT+TGG - chr2_1:9427057-9427076 Msa0193600:intron 30.0%
GTCTTAACTCTTATGTACAA+TGG - chr2_1:9427331-9427350 Msa0193600:intron 30.0%
!! ATGGCAGTTTTGTATGTATT+TGG - chr2_1:9427571-9427590 Msa0193600:intron 30.0%
! GCATCATACATGTATTTTCA+AGG - chr2_1:9427593-9427612 Msa0193600:intron 30.0%
!!! GAGTGTTATTGTTTTTATGC+CGG - chr2_1:9427673-9427692 Msa0193600:intron 30.0%
! GGCGTGTTTCTATAAATATA+AGG - chr2_1:9427773-9427792 Msa0193600:intron 30.0%
TATCTAGCAAACATGTTTAG+TGG - chr2_1:9427918-9427937 Msa0193600:intron 30.0%
TCTACATTCTTACTTGGATA+TGG + chr2_1:9428054-9428073 None:intergenic 30.0%
! TGGATATTGTGATGTTGATT+GGG + chr2_1:9428461-9428480 None:intergenic 30.0%
!! AAGGTAATGGCTTTAGATTT+AGG - chr2_1:9428507-9428526 Msa0193600:intron 30.0%
! AGCTTTATAAAGAAGGTTCA+GGG + chr2_1:9428710-9428729 None:intergenic 30.0%
! AAGCTTTATAAAGAAGGTTC+AGG + chr2_1:9428711-9428730 None:intergenic 30.0%
! AACTGCAAGCTTTATAAAGA+AGG + chr2_1:9428717-9428736 None:intergenic 30.0%
TTATTAGAGTACAACTCCAA+TGG + chr2_1:9428745-9428764 None:intergenic 30.0%
TAAAGAAAACAAGGCAAACA+TGG + chr2_1:9428833-9428852 None:intergenic 30.0%
TATGAAATCATCTGTTTGGA+GGG - chr2_1:9428861-9428880 Msa0193600:intron 30.0%
TAGAAAGAGAAATAAGCCAA+AGG - chr2_1:9428909-9428928 Msa0193600:intron 30.0%
! TTTTTATCAAAATGTCAGCG+TGG + chr2_1:9429072-9429091 None:intergenic 30.0%
TATTGAATATCCAAGCATCA+GGG + chr2_1:9429109-9429128 None:intergenic 30.0%
TTATTGAATATCCAAGCATC+AGG + chr2_1:9429110-9429129 None:intergenic 30.0%
TTTATTGAACTGGGCATATA+AGG + chr2_1:9429171-9429190 None:intergenic 30.0%
TAATATATCCAATAACCACC+TGG - chr2_1:9429216-9429235 Msa0193600:intron 30.0%
ACTATACAGTTTCTTTCACT+TGG + chr2_1:9429291-9429310 None:intergenic 30.0%
AGTGAAAGAAACTGTATAGT+TGG - chr2_1:9429291-9429310 Msa0193600:CDS 30.0%
GTGAAAGAAACTGTATAGTT+GGG - chr2_1:9429292-9429311 Msa0193600:CDS 30.0%
! CTTCTTTTTCCTCTTGATTA+TGG - chr2_1:9429350-9429369 Msa0193600:CDS 30.0%
ACTACTTATCCATAATCAAG+AGG + chr2_1:9429362-9429381 None:intergenic 30.0%
GATTATGGATAAGTAGTTAG+AGG - chr2_1:9429365-9429384 Msa0193600:CDS 30.0%
! GAAAAGATGAAGTGTTTGAA+TGG - chr2_1:9429510-9429529 Msa0193600:CDS 30.0%
GTGTTTGAATGGAAATTTGA+TGG - chr2_1:9429521-9429540 Msa0193600:CDS 30.0%
TGATGGTAGTTATCGTATAT+TGG - chr2_1:9429538-9429557 Msa0193600:CDS 30.0%
ATAAGTAAACTGGAACTGTT+AGG + chr2_1:9429623-9429642 None:intergenic 30.0%
! GGTTTTCATGAATGTTATTG+CGG - chr2_1:9429712-9429731 Msa0193600:CDS 30.0%
! CATGTTTGGTTTCTTTCTAT+GGG - chr2_1:9429735-9429754 Msa0193600:CDS 30.0%
! GTTTCTTTCTATGGGTTTTA+TGG - chr2_1:9429743-9429762 Msa0193600:CDS 30.0%
!!! TTTACCATGTGTTTTTGGAA+AGG - chr2_1:9429803-9429822 Msa0193600:CDS 30.0%
GTAGTAAAACATAGTCGTTA+TGG - chr2_1:9429939-9429958 Msa0193600:CDS 30.0%
!!! AATGTTTTGGTTATGATCAC+GGG - chr2_1:9430133-9430152 Msa0193600:CDS 30.0%
AACTGTACTTAAGCCTAATT+TGG - chr2_1:9430283-9430302 Msa0193600:five_prime_UTR 30.0%
ACTGTACTTAAGCCTAATTT+GGG - chr2_1:9430284-9430303 Msa0193600:five_prime_UTR 30.0%
AAAGAATCGTGGTGAAAATC+CGG + chr2_1:9425655-9425674 None:intergenic 35.0%
GTAATCTTCGTCAGAAAGAT+TGG - chr2_1:9425782-9425801 Msa0193600:three_prime_UTR 35.0%
!!! GAACGGTTAGATGTTTTGAT+TGG - chr2_1:9425973-9425992 Msa0193600:intron 35.0%
AATTTCCGATGAGGAATCAA+CGG + chr2_1:9426072-9426091 None:intergenic 35.0%
GAATTAGCAAATTTCCGATG+AGG + chr2_1:9426081-9426100 None:intergenic 35.0%
!! CATCGGAAATTTGCTAATTC+TGG - chr2_1:9426081-9426100 Msa0193600:intron 35.0%
TTATTCATCACCTGCAATTG+CGG - chr2_1:9426107-9426126 Msa0193600:intron 35.0%
!!! TGATGGATGATGGGTATTTT+AGG - chr2_1:9426199-9426218 Msa0193600:intron 35.0%
TCATATTTGACAGTACACTC+AGG - chr2_1:9427094-9427113 Msa0193600:intron 35.0%
CATATTTGACAGTACACTCA+GGG - chr2_1:9427095-9427114 Msa0193600:intron 35.0%
!! TTGACTTTTAGATGGTGTTG+TGG - chr2_1:9427193-9427212 Msa0193600:intron 35.0%
GCGTTTACCTTATTGCAAAA+TGG + chr2_1:9427303-9427322 None:intergenic 35.0%
ACTCTTATGTACAATGGGTA+AGG - chr2_1:9427337-9427356 Msa0193600:intron 35.0%
!!! TTGAGTTCATTTTGAAGCAG+TGG - chr2_1:9427526-9427545 Msa0193600:intron 35.0%
!!! TGAGTTCATTTTGAAGCAGT+GGG - chr2_1:9427527-9427546 Msa0193600:intron 35.0%
!! TTTGTTGGTTTGTCTTGTGA+TGG - chr2_1:9427552-9427571 Msa0193600:intron 35.0%
AAAATCAAGTCAGTCTACAC+CGG + chr2_1:9427695-9427714 None:intergenic 35.0%
AAAATGTTCCTTGAGGGAAT+AGG - chr2_1:9428139-9428158 Msa0193600:intron 35.0%
AATTGTAGTTAGTCAGAGCT+AGG + chr2_1:9428303-9428322 None:intergenic 35.0%
! GGATATTGTGATGTTGATTG+GGG + chr2_1:9428460-9428479 None:intergenic 35.0%
GTGGATATTGTGATGTTGAT+TGG + chr2_1:9428462-9428481 None:intergenic 35.0%
AATATCCACATATGCACTGA+GGG - chr2_1:9428473-9428492 Msa0193600:intron 35.0%
!! CTAAAAGGTACCATCTCTTT+GGG + chr2_1:9428533-9428552 None:intergenic 35.0%
!! TCTAAAAGGTACCATCTCTT+TGG + chr2_1:9428534-9428553 None:intergenic 35.0%
!! CCTGCATAAAGGTATCTAAA+AGG + chr2_1:9428548-9428567 None:intergenic 35.0%
! CCTTTTAGATACCTTTATGC+AGG - chr2_1:9428545-9428564 Msa0193600:intron 35.0%
ACTAACTGACCATGTTAACT+AGG - chr2_1:9428609-9428628 Msa0193600:intron 35.0%
TCTCACATTCCTAGTTAACA+TGG + chr2_1:9428621-9428640 None:intergenic 35.0%
GCTTTATAAAGAAGGTTCAG+GGG + chr2_1:9428709-9428728 None:intergenic 35.0%
TACTCTAATAACACACCTGT+TGG - chr2_1:9428754-9428773 Msa0193600:intron 35.0%
GAATTGCTACCATGTGATTA+GGG - chr2_1:9428776-9428795 Msa0193600:intron 35.0%
AATTGCTACCATGTGATTAG+GGG - chr2_1:9428777-9428796 Msa0193600:intron 35.0%
CTATGAAATCATCTGTTTGG+AGG - chr2_1:9428860-9428879 Msa0193600:intron 35.0%
AATCACGCATATACTTCCTT+TGG + chr2_1:9428928-9428947 None:intergenic 35.0%
! AAAATACTTATGGTGGTGTG+TGG + chr2_1:9429028-9429047 None:intergenic 35.0%
CATCAGGAAAATACTTATGG+TGG + chr2_1:9429035-9429054 None:intergenic 35.0%
AGGCATCAGGAAAATACTTA+TGG + chr2_1:9429038-9429057 None:intergenic 35.0%
CATAATTTAGTGGGATGGTT+TGG - chr2_1:9429191-9429210 Msa0193600:intron 35.0%
!! GTTTTGACAAGTAGCTGATA+TGG - chr2_1:9429408-9429427 Msa0193600:CDS 35.0%
TAACATCAGAGAGATGAGAT+TGG - chr2_1:9429438-9429457 Msa0193600:CDS 35.0%
! GCATGTTTGGTTTCTTTCTA+TGG - chr2_1:9429734-9429753 Msa0193600:CDS 35.0%
! AGTGCTTTACCATGTGTTTT+TGG - chr2_1:9429798-9429817 Msa0193600:CDS 35.0%
CTATCCTTTCCAAAAACACA+TGG + chr2_1:9429810-9429829 None:intergenic 35.0%
AGTAGTTATTGTGTGATACC+TGG - chr2_1:9429828-9429847 Msa0193600:CDS 35.0%
GACATTACAATGATGCAACA+AGG + chr2_1:9429871-9429890 None:intergenic 35.0%
ATTGTTGCAAGGATTTATCG+TGG - chr2_1:9429973-9429992 Msa0193600:CDS 35.0%
AAACACATGACATGTAAGTG+GGG + chr2_1:9430016-9430035 None:intergenic 35.0%
GAAACACATGACATGTAAGT+GGG + chr2_1:9430017-9430036 None:intergenic 35.0%
AGAAACACATGACATGTAAG+TGG + chr2_1:9430018-9430037 None:intergenic 35.0%
ATGTATAATAGCTAGCCAAG+CGG - chr2_1:9430076-9430095 Msa0193600:CDS 35.0%
! ATCGGAACACTCTAATGTTT+TGG - chr2_1:9430120-9430139 Msa0193600:CDS 35.0%
ACATTAGAGTCAATTCTGTG+TGG + chr2_1:9430313-9430332 None:intergenic 35.0%
TTAAACGGCGTGTGATTACA+CGG + chr2_1:9425543-9425562 None:intergenic 40.0%
CATCGGAGAAATTAGGGTTA+GGG + chr2_1:9425632-9425651 None:intergenic 40.0%
CTTTCTGACGAAGATTACCA+CGG + chr2_1:9425780-9425799 None:intergenic 40.0%
! ATCTGTGCGATGAGTTTTCT+TGG + chr2_1:9425848-9425867 None:intergenic 40.0%
GGTTGAAAAAGCTAGGGTTA+CGG - chr2_1:9425912-9425931 Msa0193600:intron 40.0%
GTTATCAATTTCTTCACCGG+TGG - chr2_1:9426017-9426036 Msa0193600:intron 40.0%
!! CGGAAATTTGCTAATTCTGG+TGG - chr2_1:9426084-9426103 Msa0193600:intron 40.0%
GCAGAATAATTCCTCTTCTG+AGG + chr2_1:9426156-9426175 None:intergenic 40.0%
!!! TGGATGATGGGTATTTTAGG+AGG - chr2_1:9426202-9426221 Msa0193600:intron 40.0%
AAGTGGATGAAGGGGATAAA+GGG - chr2_1:9426352-9426371 Msa0193600:intron 40.0%
TGGTGAAATGTATGAGAGAG+TGG - chr2_1:9426416-9426435 Msa0193600:intron 40.0%
!! TGGTGGATTTGGAGAAACAA+AGG - chr2_1:9426460-9426479 Msa0193600:intron 40.0%
CTAAAGATCTTGAAGTGCAG+AGG - chr2_1:9426493-9426512 Msa0193600:intron 40.0%
TATGGATACTCAAGTTCAGC+TGG - chr2_1:9426527-9426546 Msa0193600:intron 40.0%
ATTAAGCGTGGAAAACCATC+TGG - chr2_1:9426555-9426574 Msa0193600:intron 40.0%
TTAAGCGTGGAAAACCATCT+GGG - chr2_1:9426556-9426575 Msa0193600:intron 40.0%
!! TGAATGGTGTTATGCATGAC+AGG - chr2_1:9426710-9426729 Msa0193600:intron 40.0%
!! GAATGGTGTTATGCATGACA+GGG - chr2_1:9426711-9426730 Msa0193600:intron 40.0%
!! ATTGGCTGTTTCTAGTGCTA+TGG - chr2_1:9426863-9426882 Msa0193600:intron 40.0%
GTCAATCAGCAAGCCAAATT+GGG + chr2_1:9427140-9427159 None:intergenic 40.0%
TGTCAATCAGCAAGCCAAAT+TGG + chr2_1:9427141-9427160 None:intergenic 40.0%
TGATTGACATCGATGGGATT+TGG - chr2_1:9427152-9427171 Msa0193600:intron 40.0%
TTGCTCAGAATGCTTGTCAA+GGG + chr2_1:9427445-9427464 None:intergenic 40.0%
!!! GAGTTCATTTTGAAGCAGTG+GGG - chr2_1:9427528-9427547 Msa0193600:intron 40.0%
!! TCAACAGCATCTTGTTTCTG+TGG - chr2_1:9427626-9427645 Msa0193600:intron 40.0%
TCTTTCGTGTACGGATATAG+TGG - chr2_1:9427752-9427771 Msa0193600:intron 40.0%
CAGTTCACAATTCACAGACA+AGG - chr2_1:9428170-9428189 Msa0193600:intron 40.0%
!! TCTCATTGGAGGTTGTTTTC+AGG + chr2_1:9428208-9428227 None:intergenic 40.0%
!! TTCGAGCATCGTTTTCTCAT+TGG + chr2_1:9428222-9428241 None:intergenic 40.0%
!!! CTTGGGTTCTTTTTTTCACC+TGG + chr2_1:9428410-9428429 None:intergenic 40.0%
CAGGTGAAAAAAAGAACCCA+AGG - chr2_1:9428408-9428427 Msa0193600:intron 40.0%
CAATATCCACATATGCACTG+AGG - chr2_1:9428472-9428491 Msa0193600:intron 40.0%
GGACACTAACATGAAGGTAA+TGG - chr2_1:9428494-9428513 Msa0193600:intron 40.0%
TAGATTTAGGCCCAAAGAGA+TGG - chr2_1:9428520-9428539 Msa0193600:intron 40.0%
! TTGCTGTTAAGCCTGCATAA+AGG + chr2_1:9428559-9428578 None:intergenic 40.0%
TGCGATTGTTGCATATTGCA+AGG - chr2_1:9428644-9428663 Msa0193600:intron 40.0%
ACTATGTACAGATCAGTGGT+TGG + chr2_1:9428672-9428691 None:intergenic 40.0%
AACCACTGATCTGTACATAG+TGG - chr2_1:9428671-9428690 Msa0193600:intron 40.0%
ACCACTGATCTGTACATAGT+GGG - chr2_1:9428672-9428691 Msa0193600:intron 40.0%
GGAATTGCTACCATGTGATT+AGG - chr2_1:9428775-9428794 Msa0193600:intron 40.0%
ATTGCTACCATGTGATTAGG+GGG - chr2_1:9428778-9428797 Msa0193600:intron 40.0%
! TGTTTGGAGGGTTGATTAGA+AGG - chr2_1:9428873-9428892 Msa0193600:intron 40.0%
! GGAAGAAAGATTAAGGCATC+AGG + chr2_1:9429051-9429070 None:intergenic 40.0%
TCAGCGTGGAAGAAAGATTA+AGG + chr2_1:9429058-9429077 None:intergenic 40.0%
! GGCTTTTGCTGAAATAGTGA+TGG - chr2_1:9429459-9429478 Msa0193600:CDS 40.0%
TTACACCGTTTCAGTTGGAT+TGG - chr2_1:9429565-9429584 Msa0193600:CDS 40.0%
TACACCGTTTCAGTTGGATT+GGG - chr2_1:9429566-9429585 Msa0193600:CDS 40.0%
TGAACCCAATCCAACTGAAA+CGG + chr2_1:9429573-9429592 None:intergenic 40.0%
ATGTCACCTGTCTTGATCAT+GGG - chr2_1:9429592-9429611 Msa0193600:CDS 40.0%
AGTAAACTGGAACTGTTAGG+AGG + chr2_1:9429620-9429639 None:intergenic 40.0%
GAATGTTATTGCGGCATGTT+TGG - chr2_1:9429721-9429740 Msa0193600:CDS 40.0%
!!! TGTGTGATACCTGGTTTTGA+TGG - chr2_1:9429837-9429856 Msa0193600:CDS 40.0%
!!! GATACCTGGTTTTGATGGTA+TGG - chr2_1:9429842-9429861 Msa0193600:CDS 40.0%
TGTATAATAGCTAGCCAAGC+GGG - chr2_1:9430077-9430096 Msa0193600:CDS 40.0%
TTCAGCTGATACTGTCATGA+GGG - chr2_1:9430168-9430187 Msa0193600:CDS 40.0%
GCATCGGAGAAATTAGGGTT+AGG + chr2_1:9425633-9425652 None:intergenic 45.0%
AACCCTAATTTCTCCGATGC+CGG - chr2_1:9425633-9425652 Msa0193600:three_prime_UTR 45.0%
! ATCCGGCATCGGAGAAATTA+GGG + chr2_1:9425638-9425657 None:intergenic 45.0%
! AATCCGGCATCGGAGAAATT+AGG + chr2_1:9425639-9425658 None:intergenic 45.0%
GATGCTGTTAACGCTCTTCA+TGG - chr2_1:9425817-9425836 Msa0193600:intron 45.0%
GCTAGGGTTACGGAATCTAA+TGG - chr2_1:9425922-9425941 Msa0193600:intron 45.0%
ATCAATTTCTTCACCGGTGG+CGG - chr2_1:9426020-9426039 Msa0193600:intron 45.0%
!! CTCTTCCGTTGATTCCTCAT+CGG - chr2_1:9426064-9426083 Msa0193600:intron 45.0%
GAAGAGGAATTATTCTGCCG+TGG - chr2_1:9426158-9426177 Msa0193600:intron 45.0%
! AGCTGATGAGGATGATGATG+AGG - chr2_1:9426263-9426282 Msa0193600:intron 45.0%
! GGATGATGATGAGGATGATG+AGG - chr2_1:9426272-9426291 Msa0193600:intron 45.0%
! TGATGATGAGGATGATGAGG+TGG - chr2_1:9426275-9426294 Msa0193600:intron 45.0%
TGGAAGTAGAGGAAGAGGAA+GGG - chr2_1:9426319-9426338 Msa0193600:intron 45.0%
GAAGTGGATGAAGGGGATAA+AGG - chr2_1:9426351-9426370 Msa0193600:intron 45.0%
AAGGGGATAAAGGGAGAGAA+GGG - chr2_1:9426361-9426380 Msa0193600:intron 45.0%
GAGTGGAAGAACAGAAACTG+AGG - chr2_1:9426433-9426452 Msa0193600:intron 45.0%
AGAACAGAAACTGAGGCAGA+TGG - chr2_1:9426440-9426459 Msa0193600:intron 45.0%
GCAGAGGATGCAGATGTTTA+TGG - chr2_1:9426509-9426528 Msa0193600:intron 45.0%
GGAAAACCATCTGGGTCTAA+TGG - chr2_1:9426564-9426583 Msa0193600:intron 45.0%
ATCTCACCATTAGACCCAGA+TGG + chr2_1:9426573-9426592 None:intergenic 45.0%
! GTTATGCATGACAGGGCTTT+TGG - chr2_1:9426718-9426737 Msa0193600:intron 45.0%
ATTTGACAGTACACTCAGGG+TGG - chr2_1:9427098-9427117 Msa0193600:intron 45.0%
! GCTTGCTGATTGACATCGAT+GGG - chr2_1:9427146-9427165 Msa0193600:intron 45.0%
CTTGCTCAGAATGCTTGTCA+AGG + chr2_1:9427446-9427465 None:intergenic 45.0%
!! TTGAAGCAGTGGGGTTTTGT+TGG - chr2_1:9427537-9427556 Msa0193600:intron 45.0%
CCGTACACGAAAGAACAACA+GGG + chr2_1:9427746-9427765 None:intergenic 45.0%
CCCTGTTGTTCTTTCGTGTA+CGG - chr2_1:9427743-9427762 Msa0193600:intron 45.0%
TCCGTACACGAAAGAACAAC+AGG + chr2_1:9427747-9427766 None:intergenic 45.0%
!! GAGCATCGTTTTCTCATTGG+AGG + chr2_1:9428219-9428238 None:intergenic 45.0%
CAAGTGGAAAGCCAGAAGTT+CGG - chr2_1:9428262-9428281 Msa0193600:intron 45.0%
ACTGAGGGACACTAACATGA+AGG - chr2_1:9428488-9428507 Msa0193600:intron 45.0%
AGCAAGCCAATGAGCTTCAA+GGG - chr2_1:9428574-9428593 Msa0193600:intron 45.0%
CCACTGATCTGTACATAGTG+GGG - chr2_1:9428673-9428692 Msa0193600:intron 45.0%
AGCTTGCAGTTAGCTACCAT+TGG - chr2_1:9428726-9428745 Msa0193600:intron 45.0%
CACATGGTAGCAATTCCAAC+AGG + chr2_1:9428772-9428791 None:intergenic 45.0%
GGTGATTTCACGACTTGAAC+AGG + chr2_1:9428812-9428831 None:intergenic 45.0%
! TAAGGTTGATCCCTGATGCT+TGG - chr2_1:9429096-9429115 Msa0193600:intron 45.0%
TTGCACCTGGATACCAACTA+CGG + chr2_1:9429246-9429265 None:intergenic 45.0%
TCCAGGTGCAATGCAAATGT+AGG - chr2_1:9429255-9429274 Msa0193600:intron 45.0%
TCCTACATTTGCATTGCACC+TGG + chr2_1:9429259-9429278 None:intergenic 45.0%
GCAATGCAAATGTAGGAGTG+AGG - chr2_1:9429262-9429281 Msa0193600:intron 45.0%
TGGATAAGTAGTTAGAGGGC+TGG - chr2_1:9429370-9429389 Msa0193600:CDS 45.0%
GTTAGAGGGCTGGAAAAGTT+AGG - chr2_1:9429380-9429399 Msa0193600:CDS 45.0%
TTGCTGAAATAGTGATGGCC+TGG - chr2_1:9429464-9429483 Msa0193600:CDS 45.0%
GTGTCTTACACCGTTTCAGT+TGG - chr2_1:9429560-9429579 Msa0193600:CDS 45.0%
CATGTCACCTGTCTTGATCA+TGG - chr2_1:9429591-9429610 Msa0193600:CDS 45.0%
GCATCCATACCATCAAAACC+AGG + chr2_1:9429849-9429868 None:intergenic 45.0%
! ACGGTTTCAGTGATGGTGAT+CGG - chr2_1:9430102-9430121 Msa0193600:CDS 45.0%
CTTCAGCTGATACTGTCATG+AGG - chr2_1:9430167-9430186 Msa0193600:CDS 45.0%
TCGTGGTGAAAATCCGGCAT+CGG + chr2_1:9425649-9425668 None:intergenic 50.0%
ACGGTGGTGTGAAAGAATCG+TGG + chr2_1:9425666-9425685 None:intergenic 50.0%
TGACCAACAATCCTCGCGAA+CGG + chr2_1:9425701-9425720 None:intergenic 50.0%
TTCCACTCTCGTCGATGCAT+GGG - chr2_1:9425732-9425751 Msa0193600:three_prime_UTR 50.0%
CGGTATCTTGAACTCAACCG+TGG - chr2_1:9425760-9425779 Msa0193600:three_prime_UTR 50.0%
GTGGAATGTACCGCAATTGC+AGG + chr2_1:9426120-9426139 None:intergenic 50.0%
AATTGCGGTACATTCCACCG+CGG - chr2_1:9426122-9426141 Msa0193600:intron 50.0%
GAATTATTCTGCCGTGGCTG+CGG - chr2_1:9426164-9426183 Msa0193600:intron 50.0%
!! ACTGCTACGGTGATGGATGA+TGG - chr2_1:9426189-9426208 Msa0193600:intron 50.0%
!! CTGCTACGGTGATGGATGAT+GGG - chr2_1:9426190-9426209 Msa0193600:intron 50.0%
TGATGAGGATGATGAGGTGG+AGG - chr2_1:9426278-9426297 Msa0193600:intron 50.0%
TGATGAGGTGGAGGAAGTTG+AGG - chr2_1:9426287-9426306 Msa0193600:intron 50.0%
AGAGGTGGAAGTAGAGGAAG+AGG - chr2_1:9426314-9426333 Msa0193600:intron 50.0%
GTGGAAGTAGAGGAAGAGGA+AGG - chr2_1:9426318-9426337 Msa0193600:intron 50.0%
AAGTAGAGGAAGAGGAAGGG+AGG - chr2_1:9426322-9426341 Msa0193600:intron 50.0%
AGTAGAGGAAGAGGAAGGGA+GGG - chr2_1:9426323-9426342 Msa0193600:intron 50.0%
GAAGGGGATAAAGGGAGAGA+AGG - chr2_1:9426360-9426379 Msa0193600:intron 50.0%
AAGGGAGAGAAGGGATGAAG+AGG - chr2_1:9426370-9426389 Msa0193600:intron 50.0%
GAGAGAAGGGATGAAGAGGT+TGG - chr2_1:9426374-9426393 Msa0193600:intron 50.0%
! GCGAAGGCGATAGAGAGTTT+TGG - chr2_1:9426396-9426415 Msa0193600:intron 50.0%
ACAGAAACTGAGGCAGATGG+TGG - chr2_1:9426443-9426462 Msa0193600:intron 50.0%
!! ACTGAGGCAGATGGTGGATT+TGG - chr2_1:9426449-9426468 Msa0193600:intron 50.0%
CAGCTGGAGAGAATTAAGCG+TGG - chr2_1:9426543-9426562 Msa0193600:intron 50.0%
! CTTTTGGACCCGAGAACAGT+GGG - chr2_1:9426734-9426753 Msa0193600:intron 50.0%
ACCTTGAGACCCACTGTTCT+CGG + chr2_1:9426746-9426765 None:intergenic 50.0%
TGCCAGATGCGAACCCAATT+TGG - chr2_1:9427124-9427143 Msa0193600:intron 50.0%
AGCCAAATTGGGTTCGCATC+TGG + chr2_1:9427129-9427148 None:intergenic 50.0%
!! GGCTTGCTGATTGACATCGA+TGG - chr2_1:9427145-9427164 Msa0193600:intron 50.0%
TGACATCGATGGGATTTGGC+TGG - chr2_1:9427156-9427175 Msa0193600:intron 50.0%
CCATCTGACCTATTCCCTCA+AGG + chr2_1:9428150-9428169 None:intergenic 50.0%
CCTTGAGGGAATAGGTCAGA+TGG - chr2_1:9428147-9428166 Msa0193600:intron 50.0%
! CTGGCTTTCCACTTGCTTGT+CGG + chr2_1:9428257-9428276 None:intergenic 50.0%
TTTGCTTGCAGCCGAACTTC+TGG + chr2_1:9428276-9428295 None:intergenic 50.0%
TTTCACCTGGCTGAGTCTGT+GGG + chr2_1:9428397-9428416 None:intergenic 50.0%
! TTTTCACCTGGCTGAGTCTG+TGG + chr2_1:9428398-9428417 None:intergenic 50.0%
GATGACAGGCAGTCTACCTT+GGG + chr2_1:9428427-9428446 None:intergenic 50.0%
TGATGACAGGCAGTCTACCT+TGG + chr2_1:9428428-9428447 None:intergenic 50.0%
AGGTAGACTGCCTGTCATCA+TGG - chr2_1:9428428-9428447 Msa0193600:intron 50.0%
AGTGTCCCTCAGTGCATATG+TGG + chr2_1:9428481-9428500 None:intergenic 50.0%
CAGCAAGCCAATGAGCTTCA+AGG - chr2_1:9428573-9428592 Msa0193600:intron 50.0%
GCAAGCCAATGAGCTTCAAG+GGG - chr2_1:9428575-9428594 Msa0193600:intron 50.0%
CCAATGAGCTTCAAGGGGTT+GGG - chr2_1:9428580-9428599 Msa0193600:intron 50.0%
CCCCACTATGTACAGATCAG+TGG + chr2_1:9428676-9428695 None:intergenic 50.0%
GATGTGACCCCCTAATCACA+TGG + chr2_1:9428788-9428807 None:intergenic 50.0%
AACTGTCTATCAGCTGCGCT+GGG - chr2_1:9428990-9429009 Msa0193600:intron 50.0%
AAAACCGTCCACAAGGATCC+AGG + chr2_1:9429485-9429504 None:intergenic 50.0%
! TCCTTGTGGACGGTTTTCTG+TGG - chr2_1:9429488-9429507 Msa0193600:CDS 50.0%
TCCACAGAAAACCGTCCACA+AGG + chr2_1:9429492-9429511 None:intergenic 50.0%
GAGGATCCCATGATCAAGAC+AGG + chr2_1:9429601-9429620 None:intergenic 50.0%
CATGACATGTAAGTGGGGTG+AGG + chr2_1:9430011-9430030 None:intergenic 50.0%
TCTGTGTGGCAGCCCAAATT+AGG + chr2_1:9430299-9430318 None:intergenic 50.0%
AGCCAGTTCCCCCAATACAC+CGG - chr2_1:9425509-9425528 Msa0193600:three_prime_UTR 55.0%
TGATTACACGGTACGGTCGC+CGG + chr2_1:9425531-9425550 None:intergenic 55.0%
CGGCGTGTGATTACACGGTA+CGG + chr2_1:9425538-9425557 None:intergenic 55.0%
ACCAACAATCCTCGCGAACG+GGG + chr2_1:9425699-9425718 None:intergenic 55.0%
GACCAACAATCCTCGCGAAC+GGG + chr2_1:9425700-9425719 None:intergenic 55.0%
CTTCCACTCTCGTCGATGCA+TGG - chr2_1:9425731-9425750 Msa0193600:three_prime_UTR 55.0%
TCCACTCTCGTCGATGCATG+GGG - chr2_1:9425733-9425752 Msa0193600:three_prime_UTR 55.0%
GGAATCAACGGAAGAGCCAC+CGG + chr2_1:9426060-9426079 None:intergenic 55.0%
TGAGGTGGAGGAAGTTGAGG+AGG - chr2_1:9426290-9426309 Msa0193600:intron 55.0%
GGAGGAAGTTGAGGAGGAAG+AGG - chr2_1:9426296-9426315 Msa0193600:intron 55.0%
GGAAGTTGAGGAGGAAGAGG+TGG - chr2_1:9426299-9426318 Msa0193600:intron 55.0%
GGAGGAAGAGGTGGAAGTAG+AGG - chr2_1:9426308-9426327 Msa0193600:intron 55.0%
GTAGAGGAAGAGGAAGGGAG+GGG - chr2_1:9426324-9426343 Msa0193600:intron 55.0%
TAGAGGAAGAGGAAGGGAGG+GGG - chr2_1:9426325-9426344 Msa0193600:intron 55.0%
AGGGGGAGTGAAGTGGATGA+AGG - chr2_1:9426342-9426361 Msa0193600:intron 55.0%
GGGGGAGTGAAGTGGATGAA+GGG - chr2_1:9426343-9426362 Msa0193600:intron 55.0%
GGGGAGTGAAGTGGATGAAG+GGG - chr2_1:9426344-9426363 Msa0193600:intron 55.0%
AGGGATGAAGAGGTTGGCGA+AGG - chr2_1:9426380-9426399 Msa0193600:intron 55.0%
! GCTTTTGGACCCGAGAACAG+TGG - chr2_1:9426733-9426752 Msa0193600:intron 55.0%
CCTTGAGACCCACTGTTCTC+GGG + chr2_1:9426745-9426764 None:intergenic 55.0%
CGCAATCACCGACAAGCAAG+TGG - chr2_1:9428246-9428265 Msa0193600:intron 55.0%
GGGGTTCAGACCATGATGAC+AGG + chr2_1:9428441-9428460 None:intergenic 55.0%
GCCAATGAGCTTCAAGGGGT+TGG - chr2_1:9428579-9428598 Msa0193600:intron 55.0%
CCCAACCCCTTGAAGCTCAT+TGG + chr2_1:9428583-9428602 None:intergenic 55.0%
CAACTGTCTATCAGCTGCGC+TGG - chr2_1:9428989-9429008 Msa0193600:intron 55.0%
CAGCTGCGCTGGGTAAGTAA+AGG - chr2_1:9429000-9429019 Msa0193600:intron 55.0%
ACCTGGATACCAACTACGGC+TGG + chr2_1:9429242-9429261 None:intergenic 55.0%
AGTGATGGCCTGGATCCTTG+TGG - chr2_1:9429474-9429493 Msa0193600:CDS 55.0%
ATGGCCTGGATCCTTGTGGA+CGG - chr2_1:9429478-9429497 Msa0193600:CDS 55.0%
ATAGCTAGCCAAGCGGGCAA+CGG - chr2_1:9430083-9430102 Msa0193600:CDS 55.0%
TACGGTCGCCGGTGTATTGG+GGG + chr2_1:9425520-9425539 None:intergenic 60.0%
GTACGGTCGCCGGTGTATTG+GGG + chr2_1:9425521-9425540 None:intergenic 60.0%
GGTACGGTCGCCGGTGTATT+GGG + chr2_1:9425522-9425541 None:intergenic 60.0%
ACAATCCTCGCGAACGGGGA+CGG + chr2_1:9425695-9425714 None:intergenic 60.0%
TCCCCGTTCGCGAGGATTGT+TGG - chr2_1:9425695-9425714 Msa0193600:three_prime_UTR 60.0%
! ACCCCATGCATCGACGAGAG+TGG + chr2_1:9425737-9425756 None:intergenic 60.0%
TCGTCGATGCATGGGGTCGT+CGG - chr2_1:9425740-9425759 Msa0193600:three_prime_UTR 60.0%
ATCAACGGAAGAGCCACCGG+AGG + chr2_1:9426057-9426076 None:intergenic 60.0%
!! CTTCTGAGGTAACGCCACCG+CGG + chr2_1:9426142-9426161 None:intergenic 60.0%
CGGTGGCGTTACCTCAGAAG+AGG - chr2_1:9426142-9426161 Msa0193600:intron 60.0%
TGCGGCTACTGCTACGGTGA+TGG - chr2_1:9426182-9426201 Msa0193600:intron 60.0%
ATCAGCTTCCGCAGCAGCAG+CGG + chr2_1:9426250-9426269 None:intergenic 60.0%
TGCTGCTGCGGAAGCTGATG+AGG - chr2_1:9426251-9426270 Msa0193600:intron 60.0%
CCCGAGAACAGTGGGTCTCA+AGG - chr2_1:9426742-9426761 Msa0193600:intron 60.0%
ACTCACCCACAGACTCAGCC+AGG - chr2_1:9428389-9428408 Msa0193600:intron 60.0%
! ACGGCTGGCCAGGTGGTTAT+TGG + chr2_1:9429227-9429246 None:intergenic 60.0%
! GATACCAACTACGGCTGGCC+AGG + chr2_1:9429237-9429256 None:intergenic 60.0%
! GCCAGCCGTAGTTGGTATCC+AGG - chr2_1:9429238-9429257 Msa0193600:intron 60.0%
CACTGAAACCGTTGCCCGCT+TGG + chr2_1:9430094-9430113 None:intergenic 60.0%
GCGGGCAACGGTTTCAGTGA+TGG - chr2_1:9430095-9430114 Msa0193600:CDS 60.0%
CGCCGGTGTATTGGGGGAAC+TGG + chr2_1:9425514-9425533 None:intergenic 65.0%
CGGTACGGTCGCCGGTGTAT+TGG + chr2_1:9425523-9425542 None:intergenic 65.0%
TGCGGTACATTCCACCGCGG+TGG - chr2_1:9426125-9426144 Msa0193600:intron 65.0%
CGTAGCAGTAGCCGCAGCCA+CGG + chr2_1:9426178-9426197 None:intergenic 65.0%
CGTGGCTGCGGCTACTGCTA+CGG - chr2_1:9426176-9426195 Msa0193600:intron 65.0%
GGAAGGGAGGGGGAGTGAAG+TGG - chr2_1:9426335-9426354 Msa0193600:intron 65.0%
ACCACCTGGCCAGCCGTAGT+TGG - chr2_1:9429230-9429249 Msa0193600:intron 65.0%
! ACCAACTACGGCTGGCCAGG+TGG + chr2_1:9429234-9429253 None:intergenic 65.0%
CGAACGGGGACGGTGCGTGA+CGG + chr2_1:9425685-9425704 None:intergenic 70.0%
GGAAGAGCCACCGGAGGCGA+CGG + chr2_1:9426051-9426070 None:intergenic 70.0%
CTGAGGTAACGCCACCGCGG+TGG + chr2_1:9426139-9426158 None:intergenic 70.0%
AGCTGCAGCCGCTGCTGCTG+CGG - chr2_1:9426239-9426258 Msa0193600:intron 70.0%
ACGGGGACGGTGCGTGACGG+TGG + chr2_1:9425682-9425701 None:intergenic 75.0%
ACGCACCGTCCCCGTTCGCG+AGG - chr2_1:9425687-9425706 Msa0193600:three_prime_UTR 75.0%
!! GGCGACGGTGTCACCGCCAC+CGG + chr2_1:9426036-9426055 None:intergenic 75.0%
GGCGGTGACACCGTCGCCTC+CGG - chr2_1:9426038-9426057 Msa0193600:intron 75.0%
GGTGACACCGTCGCCTCCGG+TGG - chr2_1:9426041-9426060 Msa0193600:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 9425504 9430374 9425504 ID=Msa0193600;Name=Msa0193600
chr2_1 mRNA 9425504 9430374 9425504 ID=Msa0193600-mRNA-1;Parent=Msa0193600;Name=Msa0193600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=145|0|0.5|1|0|0.5|2|301|315
chr2_1 exon 9425504 9425804 9425504 ID=Msa0193600-mRNA-1:exon:4347;Parent=Msa0193600-mRNA-1
chr2_1 exon 9429282 9430374 9429282 ID=Msa0193600-mRNA-1:exon:4346;Parent=Msa0193600-mRNA-1
chr2_1 five_prime_UTR 9430230 9430374 9430230 ID=Msa0193600-mRNA-1:five_prime_utr;Parent=Msa0193600-mRNA-1
chr2_1 CDS 9429282 9430229 9429282 ID=Msa0193600-mRNA-1:cds;Parent=Msa0193600-mRNA-1
chr2_1 three_prime_UTR 9425504 9425804 9425504 ID=Msa0193600-mRNA-1:three_prime_utr;Parent=Msa0193600-mRNA-1
Gene Sequence

>Msa0193600

ATGCCGGATTTTCACCACGATTCTTTCACACCACCGTCACGCACCGTCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCCACTCTCGTCGATGCATGGGGTCGTCGGTATCTTGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACCAAGAAAACTCATCGCACAGATGTTCAGTGTAAGAATCGAATCGATACGATTAAGAAAAAGTATAAGGTTGAAAAAGCTAGGGTTACGGAATCTAATGGTGTTTTGAATTCTAATTGGCCTTTTTTTGAACGGTTAGATGTTTTGATTGGACCTAATTTCAGTGCTAAGAAGTTATCAATTTCTTCACCGGTGGCGGTGACACCGTCGCCTCCGGTGGCTCTTCCGTTGATTCCTCATCGGAAATTTGCTAATTCTGGTGGTTATTCATCACCTGCAATTGCGGTACATTCCACCGCGGTGGCGTTACCTCAGAAGAGGAATTATTCTGCCGTGGCTGCGGCTACTGCTACGGTGATGGATGATGGGTATTTTAGGAGGAATTATTCTGCGGTAGCTGCAGCCGCTGCTGCTGCGGAAGCTGATGAGGATGATGATGAGGATGATGAGGTGGAGGAAGTTGAGGAGGAAGAGGTGGAAGTAGAGGAAGAGGAAGGGAGGGGGAGTGAAGTGGATGAAGGGGATAAAGGGAGAGAAGGGATGAAGAGGTTGGCGAAGGCGATAGAGAGTTTTGGTGAAATGTATGAGAGAGTGGAAGAACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGATACTCAAGTTCAGCTGGAGAGAATTAAGCGTGGAAAACCATCTGGGTCTAATGGTGAGATATAA

Protein sequence

>Msa0193600

MPDFHHDSFTPPSRTVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLNSNWPFFERLDVLIGPNFSAKKLSISSPVAVTPSPPVALPLIPHRKFANSGGYSSPAIAVHSTAVALPQKRNYSAVAAATATVMDDGYFRRNYSAVAAAAAAAEADEDDDEDDEVEEVEEEEVEVEEEEGRGSEVDEGDKGREGMKRLAKAIESFGEMYERVEEQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKPSGSNGEI*