Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537530 | XP_013455135.1 | 98.467 | 261 | 4 | 0 | 1 | 261 | 1 | 261 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537530 | sp|Q5PP62|SPX3_ARATH | 61.597 | 263 | 79 | 5 | 1 | 260 | 1 | 244 | 3.65e-104 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537530 | A0A072UJ94 | 98.467 | 261 | 4 | 0 | 1 | 261 | 1 | 261 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0065010 | Msa0537530 | 0.807553 | 4.778728e-50 | -8.615850e-47 |
| Msa0101180 | Msa0537530 | 0.804293 | 2.316265e-49 | -8.615850e-47 |
| Msa0126770 | Msa0537530 | 0.816691 | 4.853068e-52 | -8.615850e-47 |
| Msa0171850 | Msa0537530 | 0.813034 | 3.139034e-51 | -8.615850e-47 |
| Msa0212750 | Msa0537530 | -0.810810 | 9.580469e-51 | -8.615850e-47 |
| Msa0221600 | Msa0537530 | 0.818905 | 1.535927e-52 | -8.615850e-47 |
| Msa0384670 | Msa0537530 | 0.808894 | 2.475016e-50 | -8.615850e-47 |
| Msa0403190 | Msa0537530 | 0.804111 | 2.526852e-49 | -8.615850e-47 |
| Msa0431770 | Msa0537530 | 0.807183 | 5.724273e-50 | -8.615850e-47 |
| Msa0434770 | Msa0537530 | 0.804713 | 1.893249e-49 | -8.615850e-47 |
| Msa0478580 | Msa0537530 | 0.824738 | 6.859458e-54 | -8.615850e-47 |
| Msa0241740 | Msa0537530 | 0.809441 | 1.889234e-50 | -8.615850e-47 |
| Msa0534080 | Msa0537530 | 0.821127 | 4.761490e-53 | -8.615850e-47 |
| Msa0537530 | Msa0578090 | 0.809466 | 1.866391e-50 | -8.615850e-47 |
| Msa0537530 | Msa0619180 | 0.819745 | 9.883290e-53 | -8.615850e-47 |
| Msa0537530 | Msa0634060 | 0.948879 | 3.918926e-107 | -8.615850e-47 |
| Msa0537530 | Msa0659990 | 0.801736 | 7.822587e-49 | -8.615850e-47 |
| Msa0537530 | Msa0687230 | 0.806996 | 6.272077e-50 | -8.615850e-47 |
| Msa0537530 | Msa0704800 | 0.824654 | 7.180366e-54 | -8.615850e-47 |
| Msa0537530 | Msa0742510 | 0.809092 | 2.244754e-50 | -8.615850e-47 |
| Msa0537530 | Msa0795660 | 0.817296 | 3.548697e-52 | -8.615850e-47 |
| Msa0537530 | Msa0921870 | 0.803550 | 3.304541e-49 | -8.615850e-47 |
| Msa0537530 | Msa0942230 | 0.805949 | 1.042641e-49 | -8.615850e-47 |
| Msa0537530 | Msa1057420 | 0.803416 | 3.523282e-49 | -8.615850e-47 |
| Msa0537530 | Msa1057430 | 0.803528 | 3.339548e-49 | -8.615850e-47 |
| Msa0537530 | Msa1071660 | 0.808393 | 3.165558e-50 | -8.615850e-47 |
| Msa0537530 | Msa1083880 | 0.812730 | 3.660368e-51 | -8.615850e-47 |
| Msa0537530 | Msa1114040 | 0.820163 | 7.929376e-53 | -8.615850e-47 |
| Msa0537530 | Msa1144970 | 0.801652 | 8.139277e-49 | -8.615850e-47 |
| Msa0537530 | Msa1158770 | 0.802635 | 5.108806e-49 | -8.615850e-47 |
| Msa0537530 | Msa1253810 | 0.828135 | 1.063543e-54 | -8.615850e-47 |
| Msa0537530 | Msa1296300 | 0.813613 | 2.342872e-51 | -8.615850e-47 |
| Msa0537530 | Msa1323990 | 0.820207 | 7.750350e-53 | -8.615850e-47 |
| Msa0537530 | Msa1329450 | 0.823868 | 1.098604e-53 | -8.615850e-47 |
| Msa0537530 | Msa1372310 | 0.802936 | 4.427339e-49 | -8.615850e-47 |
| Msa0537530 | Msa1421620 | 0.800669 | 1.293203e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537530 | MtrunA17_Chr4g0012631 | 98.467 | 261 | 4 | 0 | 1 | 261 | 1 | 261 | 0.0 | 526 |
| Msa0537530 | MtrunA17_Chr4g0063731 | 50.538 | 279 | 86 | 6 | 1 | 241 | 1 | 265 | 5.55e-75 | 229 |
| Msa0537530 | MtrunA17_Chr1g0149301 | 45.000 | 280 | 103 | 7 | 1 | 242 | 1 | 267 | 2.27e-68 | 212 |
| Msa0537530 | MtrunA17_Chr8g0372781 | 41.852 | 270 | 128 | 4 | 1 | 241 | 1 | 270 | 6.95e-65 | 204 |
| Msa0537530 | MtrunA17_Chr3g0137851 | 46.063 | 254 | 103 | 5 | 1 | 235 | 1 | 239 | 1.75e-63 | 199 |
| Msa0537530 | MtrunA17_Chr7g0231141 | 57.143 | 91 | 36 | 2 | 135 | 225 | 5 | 92 | 1.79e-26 | 99.4 |
| Msa0537530 | MtrunA17_Chr7g0231151 | 55.422 | 83 | 26 | 1 | 1 | 83 | 1 | 72 | 1.21e-21 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537530 | AT2G45130.1 | 61.597 | 263 | 79 | 5 | 1 | 260 | 1 | 244 | 3.71e-105 | 305 |
| Msa0537530 | AT5G20150.1 | 52.941 | 255 | 99 | 3 | 1 | 247 | 1 | 242 | 7.53e-82 | 246 |
| Msa0537530 | AT2G26660.1 | 45.324 | 278 | 102 | 5 | 1 | 241 | 1 | 265 | 1.73e-72 | 224 |
| Msa0537530 | AT5G15330.1 | 40.484 | 289 | 121 | 5 | 1 | 241 | 1 | 286 | 4.19e-64 | 203 |
| Msa0537530 | AT5G15330.2 | 40.484 | 289 | 121 | 5 | 1 | 241 | 70 | 355 | 1.93e-63 | 204 |
Find 43 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGAGAGTAGTTGATTTA+TGG | 0.123610 | 4_1:-16217630 | Msa0537530:CDS |
| TATTAAATCGGTTGTGAAAA+AGG | 0.191039 | 4_1:+16216833 | None:intergenic |
| CGGAAACACTGCATCGATTA+TGG | 0.197845 | 4_1:+16216785 | None:intergenic |
| CATAATCGATGCAGTGTTTC+CGG | 0.213369 | 4_1:-16216784 | Msa0537530:CDS |
| CAGCATTAAGCTGAAATAAT+TGG | 0.251302 | 4_1:+16216586 | None:intergenic |
| TCATTGCTAAATGGTTCAAT+TGG | 0.324342 | 4_1:-16222757 | Msa0537530:CDS |
| TGCTGCTGTTCCAATTGTTT+AGG | 0.325418 | 4_1:-16216568 | None:intergenic |
| CAAGAGAGTAGTTGATTTAT+GGG | 0.330113 | 4_1:-16217629 | Msa0537530:CDS |
| TAAGTTCAATGGATTCTTCA+TGG | 0.343337 | 4_1:-16222683 | Msa0537530:CDS |
| TTTGTAACATTATGAAATTT+GGG | 0.384253 | 4_1:-16222888 | None:intergenic |
| TCTGAAGGTTGACTACCATT+TGG | 0.385458 | 4_1:+16217604 | None:intergenic |
| AATGAGATTGATAAGTTCAA+TGG | 0.385635 | 4_1:-16222694 | Msa0537530:CDS |
| GCACCAACATCATTGCTAAA+TGG | 0.386868 | 4_1:-16222766 | Msa0537530:CDS |
| CACGAGTTTCGATATTAAAT+CGG | 0.396690 | 4_1:+16216821 | None:intergenic |
| ATATTTGGATCCTAAACAAT+TGG | 0.403412 | 4_1:+16216558 | None:intergenic |
| AGCAGATTATAAGGAGGAAA+TGG | 0.405461 | 4_1:-16217581 | Msa0537530:CDS |
| ACCTTCAGAAGCAGATTATA+AGG | 0.405825 | 4_1:-16217590 | Msa0537530:CDS |
| TTCAAGATACTTTGCCAGAA+TGG | 0.415009 | 4_1:-16222846 | Msa0537530:CDS |
| CGATGCAGTGTTTCCGGTCG+AGG | 0.430694 | 4_1:-16216778 | Msa0537530:CDS |
| CTAAATGGTTCAATTGGGTA+TGG | 0.441996 | 4_1:-16222751 | Msa0537530:CDS |
| AGAAGCAAAAGAAGCTATAG+TGG | 0.443949 | 4_1:-16216736 | Msa0537530:CDS |
| GGATTTCATTATCCGACATA+AGG | 0.447163 | 4_1:-16222650 | Msa0537530:intron |
| CTTTCAGCTTCTTCCTCGAC+CGG | 0.451775 | 4_1:+16216765 | None:intergenic |
| TCCTTATAATCTGCTTCTGA+AGG | 0.457313 | 4_1:+16217589 | None:intergenic |
| TATAGCAACATTAACTATAC+AGG | 0.462115 | 4_1:-16217502 | Msa0537530:intron |
| TGGGAAGAGACTCAAGCAAC+AGG | 0.471625 | 4_1:-16222869 | Msa0537530:CDS |
| AATTGGATGAGATCAGAATC+TGG | 0.480120 | 4_1:+16216603 | None:intergenic |
| CATTGCTAAATGGTTCAATT+GGG | 0.483411 | 4_1:-16222756 | Msa0537530:CDS |
| GTTGATTTATGGGGACCAAA+TGG | 0.503225 | 4_1:-16217619 | Msa0537530:CDS |
| AATTTAGTATTACCTTATGT+CGG | 0.519716 | 4_1:+16222638 | None:intergenic |
| ACAATGCAAGAAATGAGAAA+AGG | 0.524951 | 4_1:-16216669 | Msa0537530:CDS |
| TGGATTCTTCATGGAACAAG+AGG | 0.542792 | 4_1:-16222674 | Msa0537530:CDS |
| AAAGAAGCTATAGTGGTAGC+TGG | 0.544823 | 4_1:-16216729 | Msa0537530:CDS |
| GCTATAGTGGTAGCTGGTGA+AGG | 0.574524 | 4_1:-16216723 | Msa0537530:CDS |
| GAACCATTTAGCAATGATGT+TGG | 0.587784 | 4_1:+16222763 | None:intergenic |
| ATTCTTCATGGAACAAGAGG+AGG | 0.589121 | 4_1:-16222671 | Msa0537530:CDS |
| TTTAATATCGAAACTCGTGA+AGG | 0.612907 | 4_1:-16216817 | Msa0537530:CDS |
| TCAGAATCTGGCAAATTGAG+AGG | 0.614160 | 4_1:+16216615 | None:intergenic |
| AAGTATGACAAGAGGACAGG+AGG | 0.628750 | 4_1:-16216897 | Msa0537530:CDS |
| AAGAGAGTAGTTGATTTATG+GGG | 0.634787 | 4_1:-16217628 | Msa0537530:CDS |
| AATTGGGTATGGAAAATCTG+AGG | 0.650477 | 4_1:-16222740 | Msa0537530:CDS |
| TTCAGAAGCAGATTATAAGG+AGG | 0.663220 | 4_1:-16217587 | Msa0537530:CDS |
| GAATCTGGCAAATTGAGAGG+AGG | 0.664600 | 4_1:+16216618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTTTAAAAAAGAATATT+TGG | + | chr4_1:16216887-16216906 | None:intergenic | 10.0% |
| !!! | AATATTCTTTTTTAAAGATT+TGG | - | chr4_1:16216887-16216906 | Msa0537530:CDS | 10.0% |
| !!! | TTTTAGTCAATTATTAAATA+TGG | + | chr4_1:16217915-16217934 | None:intergenic | 10.0% |
| !!! | ATTTTAAGAAAAAAAGAAAA+AGG | - | chr4_1:16218072-16218091 | Msa0537530:intron | 10.0% |
| !! | AAAAATATAATTATTGAGTA+GGG | + | chr4_1:16218782-16218801 | None:intergenic | 10.0% |
| !! | AAAAAATATAATTATTGAGT+AGG | + | chr4_1:16218783-16218802 | None:intergenic | 10.0% |
| !!! | TACAATTTTTTTTTTATTAG+GGG | - | chr4_1:16219312-16219331 | Msa0537530:intron | 10.0% |
| !!! | AAATATAAAAAGGATAATTT+TGG | + | chr4_1:16219604-16219623 | None:intergenic | 10.0% |
| !!! | TTATATTATTTTTCAAGTAA+TGG | + | chr4_1:16220266-16220285 | None:intergenic | 10.0% |
| !! | TGAAAAACAAATTATTAAAA+AGG | - | chr4_1:16220527-16220546 | Msa0537530:intron | 10.0% |
| !!! | CTATATATTTTTACTTTTAT+AGG | + | chr4_1:16220597-16220616 | None:intergenic | 10.0% |
| !! | CTATAAAAGTAAAAATATAT+AGG | - | chr4_1:16220595-16220614 | Msa0537530:intron | 10.0% |
| !!! | AAATTGAAAAATGAATATTT+TGG | - | chr4_1:16221740-16221759 | Msa0537530:intron | 10.0% |
| !! | TAATATGAAGTTGAAATATA+AGG | - | chr4_1:16216914-16216933 | Msa0537530:CDS | 15.0% |
| !!! | AAGAATTCTTGATTATTTTT+AGG | + | chr4_1:16217010-16217029 | None:intergenic | 15.0% |
| !!! | TAAAGAATTCTTCTTTTTTA+AGG | + | chr4_1:16217041-16217060 | None:intergenic | 15.0% |
| !! | TATTAAAATCTTCATTGTTT+AGG | - | chr4_1:16217527-16217546 | Msa0537530:CDS | 15.0% |
| !! | TATATAAAATATTTGCTCAA+GGG | + | chr4_1:16217940-16217959 | None:intergenic | 15.0% |
| !! | ATATATAAAATATTTGCTCA+AGG | + | chr4_1:16217941-16217960 | None:intergenic | 15.0% |
| !! | AAAATGTAAACAACAATAAT+AGG | - | chr4_1:16218139-16218158 | Msa0537530:intron | 15.0% |
| !!! | TTTTGTTTATAGATTCTTTA+TGG | - | chr4_1:16218983-16219002 | Msa0537530:intron | 15.0% |
| !!! | ACAATTTTTTTTTTATTAGG+GGG | - | chr4_1:16219313-16219332 | Msa0537530:intron | 15.0% |
| !! | TATTACACTCAAATATAAAA+AGG | + | chr4_1:16219614-16219633 | None:intergenic | 15.0% |
| !! | AGATATTACATATTATTTGT+AGG | - | chr4_1:16219652-16219671 | Msa0537530:intron | 15.0% |
| !! | GATATTACATATTATTTGTA+GGG | - | chr4_1:16219653-16219672 | Msa0537530:intron | 15.0% |
| !! | ATATTACATATTATTTGTAG+GGG | - | chr4_1:16219654-16219673 | Msa0537530:intron | 15.0% |
| !!! | TAGAGATTATTTTTTTGTTT+TGG | + | chr4_1:16219755-16219774 | None:intergenic | 15.0% |
| !!! | ATTTATTTTCTTCATTGAAT+TGG | - | chr4_1:16219892-16219911 | Msa0537530:intron | 15.0% |
| !! | TGTTAGAAAATTAAGTTTAA+TGG | - | chr4_1:16220192-16220211 | Msa0537530:intron | 15.0% |
| !! | AGCTTAAAAATTAAGTTTAA+TGG | - | chr4_1:16220215-16220234 | Msa0537530:intron | 15.0% |
| !!! | AATAATATAAGTTTTTTTGG+TGG | - | chr4_1:16220276-16220295 | Msa0537530:intron | 15.0% |
| !! | TTCATAGTTTATCAATTATT+CGG | - | chr4_1:16220917-16220936 | Msa0537530:intron | 15.0% |
| !! | AAGTACATTAATTTATAATG+AGG | - | chr4_1:16221030-16221049 | Msa0537530:intron | 15.0% |
| !! | AAAAAAAAAAAGACTGAAAT+AGG | + | chr4_1:16221258-16221277 | None:intergenic | 15.0% |
| !! | AAGAAATAAATAAACTATGA+AGG | + | chr4_1:16221656-16221675 | None:intergenic | 15.0% |
| !!! | AAATAGTTTTTGGTTTAAAT+AGG | - | chr4_1:16222222-16222241 | Msa0537530:intron | 15.0% |
| !!! | AGACAAATTTTTGTCATATA+AGG | - | chr4_1:16216625-16216644 | Msa0537530:CDS | 20.0% |
| !! | AATTTAGTATTACCTTATGT+CGG | + | chr4_1:16216811-16216830 | None:intergenic | 20.0% |
| !!! | TTTTGATAACTTAGAATGTA+AGG | - | chr4_1:16216947-16216966 | Msa0537530:intron | 20.0% |
| !!! | TATTATTTGTAGCTTTTGTT+TGG | - | chr4_1:16217371-16217390 | Msa0537530:intron | 20.0% |
| !! | TTGTAAAAGTTTGTAAAAGA+TGG | + | chr4_1:16217457-16217476 | None:intergenic | 20.0% |
| !!! | ATTTTAATAAGTTGATGATG+AGG | + | chr4_1:16217516-16217535 | None:intergenic | 20.0% |
| !!! | TTGATTTTTCCATCAAATAT+TGG | - | chr4_1:16218172-16218191 | Msa0537530:intron | 20.0% |
| !! | ATGTTGGTATGTAATATATT+TGG | + | chr4_1:16219170-16219189 | None:intergenic | 20.0% |
| !! | TTTCATATGATAAACAATGA+AGG | + | chr4_1:16219378-16219397 | None:intergenic | 20.0% |
| !!! | GTATGTACTTTAAATTTTGT+TGG | - | chr4_1:16219486-16219505 | Msa0537530:intron | 20.0% |
| !!! | CTCTAGTTTTTTTTTTTTTG+AGG | - | chr4_1:16219770-16219789 | Msa0537530:intron | 20.0% |
| !! | ATTTGAATTGCTTAAAACTA+TGG | - | chr4_1:16220137-16220156 | Msa0537530:intron | 20.0% |
| !! | TTTGAATTGCTTAAAACTAT+GGG | - | chr4_1:16220138-16220157 | Msa0537530:intron | 20.0% |
| !! | ATGCATAAAAAAAATATGCA+AGG | + | chr4_1:16220324-16220343 | None:intergenic | 20.0% |
| !!! | GAAAACACATGTTTTATTTA+CGG | - | chr4_1:16220370-16220389 | Msa0537530:intron | 20.0% |
| !! | CATTAATTTATAATGAGGTA+AGG | - | chr4_1:16221035-16221054 | Msa0537530:intron | 20.0% |
| !!! | AAGGATAATATTTTGCTTTT+TGG | + | chr4_1:16221637-16221656 | None:intergenic | 20.0% |
| !!! | TATGATCATGATTTTACAAT+TGG | - | chr4_1:16221764-16221783 | Msa0537530:intron | 20.0% |
| !!! | TGAAATACATAATTTTCGAA+AGG | - | chr4_1:16222048-16222067 | Msa0537530:intron | 20.0% |
| !!! | GAAATACATAATTTTCGAAA+GGG | - | chr4_1:16222049-16222068 | Msa0537530:intron | 20.0% |
| !! | TTAGTAGTCTAGAAAATTAT+AGG | + | chr4_1:16222315-16222334 | None:intergenic | 20.0% |
| !!! | AATTTTCTAGACTACTAAAT+AGG | - | chr4_1:16222317-16222336 | Msa0537530:intron | 20.0% |
| !!! | TCATAAATTTGTTTTCACTA+TGG | + | chr4_1:16222439-16222458 | None:intergenic | 20.0% |
| !!! | ACAAAAAAATCAATGTGTTT+TGG | + | chr4_1:16222507-16222526 | None:intergenic | 20.0% |
| !!! | AAACACATTGATTTTTTTGT+AGG | - | chr4_1:16222507-16222526 | Msa0537530:intron | 20.0% |
| !!! | AACACATTGATTTTTTTGTA+GGG | - | chr4_1:16222508-16222527 | Msa0537530:intron | 20.0% |
| ! | AATGAGATTGATAAGTTCAA+TGG | - | chr4_1:16216752-16216771 | Msa0537530:CDS | 25.0% |
| ! | TACAAATAATAGTTTCGAAC+TGG | + | chr4_1:16217362-16217381 | None:intergenic | 25.0% |
| ! | TAGTCATAAGAAAGATAATG+AGG | + | chr4_1:16217480-16217499 | None:intergenic | 25.0% |
| ! | TATTCTAACGAATATTCGAT+AGG | + | chr4_1:16217670-16217689 | None:intergenic | 25.0% |
| !!! | AAAGGATTGTTTTAGTTGTT+TGG | - | chr4_1:16217848-16217867 | Msa0537530:intron | 25.0% |
| ! | AAAGTGAAATAGAATGTTGA+AGG | - | chr4_1:16217879-16217898 | Msa0537530:intron | 25.0% |
| ! | ACATGTCTATATTGTTTCAA+TGG | - | chr4_1:16218015-16218034 | Msa0537530:intron | 25.0% |
| ! | ATGTAAACAACAATAATAGG+TGG | - | chr4_1:16218142-16218161 | Msa0537530:intron | 25.0% |
| ! | TGTAAACAACAATAATAGGT+GGG | - | chr4_1:16218143-16218162 | Msa0537530:intron | 25.0% |
| !!! | AAGGAAAGAAAGATTTTAGT+GGG | + | chr4_1:16218252-16218271 | None:intergenic | 25.0% |
| !! | TAAGGAAAGAAAGATTTTAG+TGG | + | chr4_1:16218253-16218272 | None:intergenic | 25.0% |
| ! | AAACAAACATACCCTAAAAA+TGG | - | chr4_1:16218350-16218369 | Msa0537530:intron | 25.0% |
| ! | AACAAACATACCCTAAAAAT+GGG | - | chr4_1:16218351-16218370 | Msa0537530:intron | 25.0% |
| !!! | AACAACTAAGCACTTTTTTT+GGG | - | chr4_1:16218396-16218415 | Msa0537530:intron | 25.0% |
| ! | CAACTAAGCACTTTAATATA+AGG | - | chr4_1:16218426-16218445 | Msa0537530:intron | 25.0% |
| !!! | AATTATTTTTAGTACCCATG+TGG | + | chr4_1:16218534-16218553 | None:intergenic | 25.0% |
| ! | CTTAATAAGCAGATATTAAG+CGG | - | chr4_1:16218615-16218634 | Msa0537530:intron | 25.0% |
| ! | AAATGGAGAACTTTGTTAAA+AGG | - | chr4_1:16218925-16218944 | Msa0537530:intron | 25.0% |
| ! | TGAAAAAAGAAAATGTTGAC+CGG | - | chr4_1:16219393-16219412 | Msa0537530:intron | 25.0% |
| ! | GTGTAATATAAAATCTCAGT+TGG | - | chr4_1:16219626-16219645 | Msa0537530:intron | 25.0% |
| ! | ATTATGCAAACTCATTTAAC+CGG | + | chr4_1:16219834-16219853 | None:intergenic | 25.0% |
| ! | AATTTAGTGATTTCTTACAC+TGG | - | chr4_1:16220035-16220054 | Msa0537530:intron | 25.0% |
| !!! | ATGTTTTTGACCCATATATT+CGG | + | chr4_1:16220114-16220133 | None:intergenic | 25.0% |
| ! | TTGAATTGCTTAAAACTATG+GGG | - | chr4_1:16220139-16220158 | Msa0537530:intron | 25.0% |
| !!! | GGGTTCATATAGTTATTTTT+GGG | - | chr4_1:16220159-16220178 | Msa0537530:intron | 25.0% |
| ! | TAAAAAAAATATGCAAGGTC+CGG | + | chr4_1:16220319-16220338 | None:intergenic | 25.0% |
| !!! | TCAAACATGTGTTTTGAATT+TGG | + | chr4_1:16220352-16220371 | None:intergenic | 25.0% |
| ! | GCATAAAAAAATGTTGAATC+CGG | - | chr4_1:16220448-16220467 | Msa0537530:intron | 25.0% |
| ! | CCTCAAAAAAATAATTCATC+CGG | + | chr4_1:16220470-16220489 | None:intergenic | 25.0% |
| !!! | CGGATGAATTATTTTTTTGA+GGG | - | chr4_1:16220468-16220487 | Msa0537530:intron | 25.0% |
| !! | TCAGAAAAGCAATTTTCAAT+AGG | + | chr4_1:16220638-16220657 | None:intergenic | 25.0% |
| !! | TTTGAAATTACAGGTACAAA+CGG | + | chr4_1:16220836-16220855 | None:intergenic | 25.0% |
| ! | CTTTATGATCATAAGATTGA+TGG | + | chr4_1:16221719-16221738 | None:intergenic | 25.0% |
| !!! | AAAGCTATTGTTGATTTTCA+TGG | - | chr4_1:16221899-16221918 | Msa0537530:intron | 25.0% |
| ! | TATAGCAACATTAACTATAC+AGG | - | chr4_1:16221944-16221963 | Msa0537530:intron | 25.0% |
| ! | TTGTACTCTCATGTATATTT+GGG | + | chr4_1:16221994-16222013 | None:intergenic | 25.0% |
| ! | ATTGTACTCTCATGTATATT+TGG | + | chr4_1:16221995-16222014 | None:intergenic | 25.0% |
| !! | TCAATTTTATCACGACTAAT+TGG | - | chr4_1:16222022-16222041 | Msa0537530:intron | 25.0% |
| ! | TGTGTTGAAGTAAATGAAAA+AGG | + | chr4_1:16222141-16222160 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAAGTATGACAAG+AGG | - | chr4_1:16222541-16222560 | Msa0537530:intron | 25.0% |
| !! | ACCATTCATTCAAAAAGTAT+TGG | - | chr4_1:16222584-16222603 | Msa0537530:intron | 25.0% |
| !!! | TCCAATACTTTTTGAATGAA+TGG | + | chr4_1:16222588-16222607 | None:intergenic | 25.0% |
| ! | ATTAAATCGGTTGTGAAAAA+GGG | + | chr4_1:16222615-16222634 | None:intergenic | 25.0% |
| ! | TATTAAATCGGTTGTGAAAA+AGG | + | chr4_1:16222616-16222635 | None:intergenic | 25.0% |
| !! | TGAAGGAATTTTCAGAAATA+CGG | - | chr4_1:16222740-16222759 | Msa0537530:CDS | 25.0% |
| AAAAATTTGTCTCTCCATTC+TGG | + | chr4_1:16216617-16216636 | None:intergenic | 30.0% | |
| TCATTGCTAAATGGTTCAAT+TGG | - | chr4_1:16216689-16216708 | Msa0537530:CDS | 30.0% | |
| CATTGCTAAATGGTTCAATT+GGG | - | chr4_1:16216690-16216709 | Msa0537530:CDS | 30.0% | |
| ! | TAAGTTCAATGGATTCTTCA+TGG | - | chr4_1:16216763-16216782 | Msa0537530:CDS | 30.0% |
| ! | AAGTATCGTACGTTATTGAA+TGG | - | chr4_1:16217623-16217642 | Msa0537530:CDS | 30.0% |
| AGTATCGTACGTTATTGAAT+GGG | - | chr4_1:16217624-16217643 | Msa0537530:CDS | 30.0% | |
| AAAGACACAAATTTCCACAA+GGG | + | chr4_1:16217742-16217761 | None:intergenic | 30.0% | |
| TAAAGACACAAATTTCCACA+AGG | + | chr4_1:16217743-16217762 | None:intergenic | 30.0% | |
| TGTGGAAATTTGTGTCTTTA+AGG | - | chr4_1:16217743-16217762 | Msa0537530:intron | 30.0% | |
| GTGGAAATTTGTGTCTTTAA+GGG | - | chr4_1:16217744-16217763 | Msa0537530:intron | 30.0% | |
| GTAAAAGAGTAGAAAGTGAA+AGG | - | chr4_1:16217830-16217849 | Msa0537530:intron | 30.0% | |
| GTAAACAACAATAATAGGTG+GGG | - | chr4_1:16218144-16218163 | Msa0537530:intron | 30.0% | |
| !! | AGGAAAGAAAGATTTTAGTG+GGG | + | chr4_1:16218251-16218270 | None:intergenic | 30.0% |
| ! | TTGTTTGGAACACTATAGAA+AGG | + | chr4_1:16218277-16218296 | None:intergenic | 30.0% |
| TTCTATAGTGTTCCAAACAA+AGG | - | chr4_1:16218277-16218296 | Msa0537530:intron | 30.0% | |
| !!! | AAGAAGCATTTTCCTTTGTT+TGG | + | chr4_1:16218292-16218311 | None:intergenic | 30.0% |
| ! | TGTTTCTAAGGAAAGAAAGT+GGG | + | chr4_1:16218335-16218354 | None:intergenic | 30.0% |
| !! | TTGTTTCTAAGGAAAGAAAG+TGG | + | chr4_1:16218336-16218355 | None:intergenic | 30.0% |
| !! | TTAGGGTATGTTTGTTTCTA+AGG | + | chr4_1:16218347-16218366 | None:intergenic | 30.0% |
| !!! | CAACAACTAAGCACTTTTTT+TGG | - | chr4_1:16218395-16218414 | Msa0537530:intron | 30.0% |
| TAAAAATGATCAACACCACA+TGG | - | chr4_1:16218516-16218535 | Msa0537530:intron | 30.0% | |
| AAAAATGATCAACACCACAT+GGG | - | chr4_1:16218517-16218536 | Msa0537530:intron | 30.0% | |
| ACACTAAGAAAAGAAATGCT+AGG | + | chr4_1:16218680-16218699 | None:intergenic | 30.0% | |
| ATTATTACGGTAAAACTGCA+TGG | - | chr4_1:16218807-16218826 | Msa0537530:intron | 30.0% | |
| !!! | CTATTGCGGTGATATTTTTT+TGG | + | chr4_1:16219126-16219145 | None:intergenic | 30.0% |
| TATGATAAACAATGAAGGCA+GGG | + | chr4_1:16219373-16219392 | None:intergenic | 30.0% | |
| ATATGATAAACAATGAAGGC+AGG | + | chr4_1:16219374-16219393 | None:intergenic | 30.0% | |
| ATACAAAAAATTCTCGTGCT+GGG | + | chr4_1:16219470-16219489 | None:intergenic | 30.0% | |
| CAATTTAATTGTGGAGAAGT+GGG | + | chr4_1:16219702-16219721 | None:intergenic | 30.0% | |
| ACAATTTAATTGTGGAGAAG+TGG | + | chr4_1:16219703-16219722 | None:intergenic | 30.0% | |
| AATAAATGATTGAGCTGAAC+CGG | - | chr4_1:16219812-16219831 | Msa0537530:intron | 30.0% | |
| TATGCTTAACGAATATTCGT+TGG | - | chr4_1:16219948-16219967 | Msa0537530:intron | 30.0% | |
| ! | TTTTGTAAATGTACCTTCCT+AGG | - | chr4_1:16220007-16220026 | Msa0537530:intron | 30.0% |
| AATCACTAAATTTCCAACCT+AGG | + | chr4_1:16220027-16220046 | None:intergenic | 30.0% | |
| !! | GGGGTTCATATAGTTATTTT+TGG | - | chr4_1:16220158-16220177 | Msa0537530:intron | 30.0% |
| !! | TTTCAAGTAATGGAGTATTG+TGG | + | chr4_1:16220256-16220275 | None:intergenic | 30.0% |
| TCATATCATCCAAATTCAAG+AGG | - | chr4_1:16220405-16220424 | Msa0537530:intron | 30.0% | |
| GGAATGAGGGAATATATTTA+TGG | - | chr4_1:16220426-16220445 | Msa0537530:intron | 30.0% | |
| !!! | CCGGATGAATTATTTTTTTG+AGG | - | chr4_1:16220467-16220486 | Msa0537530:intron | 30.0% |
| GTTCTGTTTATTTGTGTGAA+CGG | + | chr4_1:16220777-16220796 | None:intergenic | 30.0% | |
| ! | GAATTGACGTTTGAAATTAC+AGG | + | chr4_1:16220845-16220864 | None:intergenic | 30.0% |
| !! | ATTGTTGGATGTTGTTGTTT+CGG | + | chr4_1:16220882-16220901 | None:intergenic | 30.0% |
| ATGTTGATGTTTGTGATTGT+TGG | + | chr4_1:16220897-16220916 | None:intergenic | 30.0% | |
| ! | CACAAAGCTCATCATATTTT+TGG | - | chr4_1:16221368-16221387 | Msa0537530:intron | 30.0% |
| ! | AAAGGTGCATGAGAAATTAT+GGG | + | chr4_1:16221394-16221413 | None:intergenic | 30.0% |
| ! | TAAAGGTGCATGAGAAATTA+TGG | + | chr4_1:16221395-16221414 | None:intergenic | 30.0% |
| ! | TCAAGAGAGTAGTTGATTTA+TGG | - | chr4_1:16221816-16221835 | Msa0537530:intron | 30.0% |
| ! | CAAGAGAGTAGTTGATTTAT+GGG | - | chr4_1:16221817-16221836 | Msa0537530:intron | 30.0% |
| ! | AAGAGAGTAGTTGATTTATG+GGG | - | chr4_1:16221818-16221837 | Msa0537530:intron | 30.0% |
| !!! | TGTTGATTTTCATGGTGAAA+TGG | - | chr4_1:16221907-16221926 | Msa0537530:intron | 30.0% |
| ! | TTCTCACGAAAAACTTTTTG+CGG | - | chr4_1:16222081-16222100 | Msa0537530:intron | 30.0% |
| ACTGTGTAATTATACTGTAG+TGG | - | chr4_1:16222114-16222133 | Msa0537530:intron | 30.0% | |
| !!! | TTGTTTTTACCGGAAAACAT+GGG | + | chr4_1:16222164-16222183 | None:intergenic | 30.0% |
| ! | GGTTTCGTGAAAATAGTTTT+TGG | - | chr4_1:16222212-16222231 | Msa0537530:intron | 30.0% |
| ! | AAAGTACTAAAATGATCGAG+AGG | + | chr4_1:16222282-16222301 | None:intergenic | 30.0% |
| !! | CTCGATCATTTTAGTACTTT+TGG | - | chr4_1:16222282-16222301 | Msa0537530:intron | 30.0% |
| ! | AACGAATTTGATTCGAAACA+TGG | + | chr4_1:16222362-16222381 | None:intergenic | 30.0% |
| CACGAGTTTCGATATTAAAT+CGG | + | chr4_1:16222628-16222647 | None:intergenic | 30.0% | |
| TTTAATATCGAAACTCGTGA+AGG | - | chr4_1:16222629-16222648 | Msa0537530:intron | 30.0% | |
| ! | AATTTTCAGAAATACGGTTG+CGG | - | chr4_1:16222746-16222765 | Msa0537530:CDS | 30.0% |
| ACAATGCAAGAAATGAGAAA+AGG | - | chr4_1:16222777-16222796 | Msa0537530:CDS | 30.0% | |
| CAGCATTAAGCTGAAATAAT+TGG | + | chr4_1:16222863-16222882 | None:intergenic | 30.0% | |
| TTCAAGATACTTTGCCAGAA+TGG | - | chr4_1:16216600-16216619 | Msa0537530:CDS | 35.0% | |
| GAACCATTTAGCAATGATGT+TGG | + | chr4_1:16216686-16216705 | None:intergenic | 35.0% | |
| CTAAATGGTTCAATTGGGTA+TGG | - | chr4_1:16216695-16216714 | Msa0537530:CDS | 35.0% | |
| AATTGGGTATGGAAAATCTG+AGG | - | chr4_1:16216706-16216725 | Msa0537530:CDS | 35.0% | |
| GGATTTCATTATCCGACATA+AGG | - | chr4_1:16216796-16216815 | Msa0537530:CDS | 35.0% | |
| CTCGTTACTCATGTCTTTAT+TGG | + | chr4_1:16217250-16217269 | None:intergenic | 35.0% | |
| TGTAAATATACCTTCCCTTG+TGG | - | chr4_1:16217725-16217744 | Msa0537530:intron | 35.0% | |
| GAGAAAGGAAAGATTGTATG+AGG | - | chr4_1:16217804-16217823 | Msa0537530:intron | 35.0% | |
| GAGGAAACACCAATATTTGA+TGG | + | chr4_1:16218184-16218203 | None:intergenic | 35.0% | |
| GGAACACTATAGAAAGGTTA+AGG | + | chr4_1:16218271-16218290 | None:intergenic | 35.0% | |
| ! | GTTTCTAAGGAAAGAAAGTG+GGG | + | chr4_1:16218334-16218353 | None:intergenic | 35.0% |
| AACATACCCTAAAAATGGGT+TGG | - | chr4_1:16218355-16218374 | Msa0537530:intron | 35.0% | |
| ! | ACATACCCTAAAAATGGGTT+GGG | - | chr4_1:16218356-16218375 | Msa0537530:intron | 35.0% |
| !! | TTCTACCCAACCCATTTTTA+GGG | + | chr4_1:16218364-16218383 | None:intergenic | 35.0% |
| !! | TTTCTACCCAACCCATTTTT+AGG | + | chr4_1:16218365-16218384 | None:intergenic | 35.0% |
| AAGAAAAGAAATGCTAGGCT+AGG | + | chr4_1:16218675-16218694 | None:intergenic | 35.0% | |
| AGACACAAGTTGTGTTAAAC+TGG | - | chr4_1:16218841-16218860 | Msa0537530:intron | 35.0% | |
| TACTAACATGTGCTCTTATC+TGG | + | chr4_1:16218878-16218897 | None:intergenic | 35.0% | |
| TTCATAGATCCTTCATTCAG+TGG | - | chr4_1:16219010-16219029 | Msa0537530:intron | 35.0% | |
| !! | TGTGAACTAAAAGTGTCTCA+AGG | - | chr4_1:16219268-16219287 | Msa0537530:intron | 35.0% |
| !! | GTGAACTAAAAGTGTCTCAA+GGG | - | chr4_1:16219269-16219288 | Msa0537530:intron | 35.0% |
| ATGATAAACAATGAAGGCAG+GGG | + | chr4_1:16219372-16219391 | None:intergenic | 35.0% | |
| CATACAAAAAATTCTCGTGC+TGG | + | chr4_1:16219471-16219490 | None:intergenic | 35.0% | |
| TACATATTATTTGTAGGGGC+CGG | - | chr4_1:16219658-16219677 | Msa0537530:intron | 35.0% | |
| GAGCTCACACAATTTAATTG+TGG | + | chr4_1:16219711-16219730 | None:intergenic | 35.0% | |
| TTTGGTTAAGTGTAGCTTAG+TGG | + | chr4_1:16219737-16219756 | None:intergenic | 35.0% | |
| ACTAAATTTCCAACCTAGGA+AGG | + | chr4_1:16220023-16220042 | None:intergenic | 35.0% | |
| ! | TTTTTGACCCATATATTCGG+TGG | + | chr4_1:16220111-16220130 | None:intergenic | 35.0% |
| ATCCAAATTCAAGAGGAATG+AGG | - | chr4_1:16220412-16220431 | Msa0537530:intron | 35.0% | |
| TCCAAATTCAAGAGGAATGA+GGG | - | chr4_1:16220413-16220432 | Msa0537530:intron | 35.0% | |
| ! | AATGGTTTTTCCAGCCATTT+TGG | - | chr4_1:16220810-16220829 | Msa0537530:intron | 35.0% |
| !! | TGTTGTTTCGGTTTGATTTC+AGG | + | chr4_1:16220870-16220889 | None:intergenic | 35.0% |
| GTGAAACGTTAACGCATTAT+CGG | + | chr4_1:16220959-16220978 | None:intergenic | 35.0% | |
| GTGTAATGTGTTGCATAATG+TGG | + | chr4_1:16221007-16221026 | None:intergenic | 35.0% | |
| ATCGAATTGTGAGATATACG+TGG | - | chr4_1:16221304-16221323 | Msa0537530:intron | 35.0% | |
| ATAGGAAATAGCAAGAACGT+AGG | + | chr4_1:16221421-16221440 | None:intergenic | 35.0% | |
| TTTCCTATCATTACATGCTC+AGG | - | chr4_1:16221433-16221452 | Msa0537530:intron | 35.0% | |
| !! | TACAATTGGATTTTGAGTGC+AGG | - | chr4_1:16221778-16221797 | Msa0537530:intron | 35.0% |
| ACCTTCAGAAGCAGATTATA+AGG | - | chr4_1:16221856-16221875 | Msa0537530:intron | 35.0% | |
| TCCTTATAATCTGCTTCTGA+AGG | + | chr4_1:16221860-16221879 | None:intergenic | 35.0% | |
| TTCAGAAGCAGATTATAAGG+AGG | - | chr4_1:16221859-16221878 | Msa0537530:intron | 35.0% | |
| AGCAGATTATAAGGAGGAAA+TGG | - | chr4_1:16221865-16221884 | Msa0537530:intron | 35.0% | |
| !!! | CTTGTTTTTACCGGAAAACA+TGG | + | chr4_1:16222165-16222184 | None:intergenic | 35.0% |
| !!! | CATTGATTTTTTTGTAGGGC+TGG | - | chr4_1:16222512-16222531 | Msa0537530:intron | 35.0% |
| ! | AAAAAGTATGACAAGAGGAC+AGG | - | chr4_1:16222546-16222565 | Msa0537530:intron | 35.0% |
| AGAAGCAAAAGAAGCTATAG+TGG | - | chr4_1:16222710-16222729 | Msa0537530:CDS | 35.0% | |
| AATTGGATGAGATCAGAATC+TGG | + | chr4_1:16222846-16222865 | None:intergenic | 35.0% | |
| GCACCAACATCATTGCTAAA+TGG | - | chr4_1:16216680-16216699 | Msa0537530:CDS | 40.0% | |
| TGGATTCTTCATGGAACAAG+AGG | - | chr4_1:16216772-16216791 | Msa0537530:CDS | 40.0% | |
| ATTCTTCATGGAACAAGAGG+AGG | - | chr4_1:16216775-16216794 | Msa0537530:CDS | 40.0% | |
| TGAGTAACGAGAAAACGTGT+CGG | - | chr4_1:16217259-16217278 | Msa0537530:intron | 40.0% | |
| !! | GTTTTGATCGTCGAATCTCA+CGG | - | chr4_1:16217400-16217419 | Msa0537530:intron | 40.0% |
| ACACAAATTTCCACAAGGGA+AGG | + | chr4_1:16217738-16217757 | None:intergenic | 40.0% | |
| ! | TGTGTCTTTAAGGGTGTGTT+TGG | - | chr4_1:16217753-16217772 | Msa0537530:intron | 40.0% |
| ! | TCTTTAAGGGTGTGTTTGGT+TGG | - | chr4_1:16217757-16217776 | Msa0537530:intron | 40.0% |
| ! | CTTTAAGGGTGTGTTTGGTT+GGG | - | chr4_1:16217758-16217777 | Msa0537530:intron | 40.0% |
| ! | TTTAAGGGTGTGTTTGGTTG+GGG | - | chr4_1:16217759-16217778 | Msa0537530:intron | 40.0% |
| GTGAAGGGAAAGATAGAGAA+AGG | - | chr4_1:16217789-16217808 | Msa0537530:intron | 40.0% | |
| TCAAATGCACGGAAAGATTG+AGG | + | chr4_1:16218203-16218222 | None:intergenic | 40.0% | |
| TCAATCTTTCCGTGCATTTG+AGG | - | chr4_1:16218202-16218221 | Msa0537530:intron | 40.0% | |
| CAATCTTTCCGTGCATTTGA+GGG | - | chr4_1:16218203-16218222 | Msa0537530:intron | 40.0% | |
| ! | GTGGAAAGGTTTTCTTAGGT+GGG | - | chr4_1:16218225-16218244 | Msa0537530:intron | 40.0% |
| ! | CGGTAAAACTGCATGGATTA+TGG | - | chr4_1:16218814-16218833 | Msa0537530:intron | 40.0% |
| ATAGATCCTTCATTCAGTGG+CGG | - | chr4_1:16219013-16219032 | Msa0537530:intron | 40.0% | |
| CGGATCTTGCCGAAAATATT+GGG | - | chr4_1:16219033-16219052 | Msa0537530:intron | 40.0% | |
| GGATCTTGCCGAAAATATTG+GGG | - | chr4_1:16219034-16219053 | Msa0537530:intron | 40.0% | |
| GATCTTGCCGAAAATATTGG+GGG | - | chr4_1:16219035-16219054 | Msa0537530:intron | 40.0% | |
| !! | GAATCGCGTTTTGATATGTG+AGG | - | chr4_1:16219199-16219218 | Msa0537530:intron | 40.0% |
| TTTGATATGTGAGGATGGAG+AGG | - | chr4_1:16219208-16219227 | Msa0537530:intron | 40.0% | |
| ! | TTTTGTCTGAGTCTCTCTCT+CGG | + | chr4_1:16219244-16219263 | None:intergenic | 40.0% |
| !!! | TTTTTTATTAGGGGGTGCCA+CGG | - | chr4_1:16219321-16219340 | Msa0537530:intron | 40.0% |
| ACATATTATTTGTAGGGGCC+GGG | - | chr4_1:16219659-16219678 | Msa0537530:intron | 40.0% | |
| GTAAATGTACCTTCCTAGGT+TGG | - | chr4_1:16220011-16220030 | Msa0537530:intron | 40.0% | |
| TGCAAGATCCACCGAATATA+TGG | - | chr4_1:16220100-16220119 | Msa0537530:intron | 40.0% | |
| GCAAGATCCACCGAATATAT+GGG | - | chr4_1:16220101-16220120 | Msa0537530:intron | 40.0% | |
| !!! | AGTTTTTTTGGTGGTGATCG+AGG | - | chr4_1:16220285-16220304 | Msa0537530:intron | 40.0% |
| TCCCTCATTCCTCTTGAATT+TGG | + | chr4_1:16220417-16220436 | None:intergenic | 40.0% | |
| AATTACCTAAAAGCCTCCAG+CGG | - | chr4_1:16220686-16220705 | Msa0537530:intron | 40.0% | |
| ! | TGTTTCGGTTTGATTTCAGG+TGG | + | chr4_1:16220867-16220886 | None:intergenic | 40.0% |
| AGGTAAGGTGATGAGTGAAT+AGG | - | chr4_1:16221050-16221069 | Msa0537530:intron | 40.0% | |
| TAAGGTGATGAGTGAATAGG+AGG | - | chr4_1:16221053-16221072 | Msa0537530:intron | 40.0% | |
| TGATGAGTGAATAGGAGGTA+GGG | - | chr4_1:16221058-16221077 | Msa0537530:intron | 40.0% | |
| !!! | AGGTAGGGTTTTCTGGTTTT+GGG | - | chr4_1:16221073-16221092 | Msa0537530:intron | 40.0% |
| !! | AATTACTTTAAAGCCCCCAG+CGG | + | chr4_1:16221187-16221206 | None:intergenic | 40.0% |
| AGCAAGAACGTAGGTGATAA+AGG | + | chr4_1:16221412-16221431 | None:intergenic | 40.0% | |
| CAACCTGAGCATGTAATGAT+AGG | + | chr4_1:16221439-16221458 | None:intergenic | 40.0% | |
| GTAGTGTTGTGTTTCTCACA+TGG | - | chr4_1:16221683-16221702 | Msa0537530:intron | 40.0% | |
| TGTGTTTCTCACATGGAGAT+AGG | - | chr4_1:16221690-16221709 | Msa0537530:intron | 40.0% | |
| ! | GTTGATTTATGGGGACCAAA+TGG | - | chr4_1:16221827-16221846 | Msa0537530:intron | 40.0% |
| TCTGAAGGTTGACTACCATT+TGG | + | chr4_1:16221845-16221864 | None:intergenic | 40.0% | |
| ! | TTCAACACACCCATGTTTTC+CGG | - | chr4_1:16222152-16222171 | Msa0537530:intron | 40.0% |
| !!! | GCGTTGGATCTTGTTTTTAC+CGG | + | chr4_1:16222174-16222193 | None:intergenic | 40.0% |
| CATAATCGATGCAGTGTTTC+CGG | - | chr4_1:16222662-16222681 | Msa0537530:CDS | 40.0% | |
| AAAGAAGCTATAGTGGTAGC+TGG | - | chr4_1:16222717-16222736 | Msa0537530:CDS | 40.0% | |
| TCAGAATCTGGCAAATTGAG+AGG | + | chr4_1:16222834-16222853 | None:intergenic | 40.0% | |
| GAGTAACGAGAAAACGTGTC+GGG | - | chr4_1:16217260-16217279 | Msa0537530:intron | 45.0% | |
| ! | TTAAGGGTGTGTTTGGTTGG+GGG | - | chr4_1:16217760-16217779 | Msa0537530:intron | 45.0% |
| ! | GAGGGTGGAAAGGTTTTCTT+AGG | - | chr4_1:16218221-16218240 | Msa0537530:intron | 45.0% |
| ! | GGTGGAAAGGTTTTCTTAGG+TGG | - | chr4_1:16218224-16218243 | Msa0537530:intron | 45.0% |
| TCTAAGGAAAGAAAGTGGGG+AGG | + | chr4_1:16218331-16218350 | None:intergenic | 45.0% | |
| GTGTTAAACTGGCAACGTGT+CGG | - | chr4_1:16218852-16218871 | Msa0537530:intron | 45.0% | |
| GCGGATCTTGCCGAAAATAT+TGG | - | chr4_1:16219032-16219051 | Msa0537530:intron | 45.0% | |
| ! | TACCGCACCCCCAATATTTT+CGG | + | chr4_1:16219045-16219064 | None:intergenic | 45.0% |
| GTCTCGTGTTTGAGCTATTG+CGG | + | chr4_1:16219140-16219159 | None:intergenic | 45.0% | |
| GCGATTCTCACTTCTCATGT+TGG | + | chr4_1:16219186-16219205 | None:intergenic | 45.0% | |
| !! | CGCGTTTTGATATGTGAGGA+TGG | - | chr4_1:16219203-16219222 | Msa0537530:intron | 45.0% |
| ATAAACAATGAAGGCAGGGG+CGG | + | chr4_1:16219369-16219388 | None:intergenic | 45.0% | |
| TGCTTCCTTAACCAGTACTC+CGG | + | chr4_1:16219424-16219443 | None:intergenic | 45.0% | |
| CATATTATTTGTAGGGGCCG+GGG | - | chr4_1:16219660-16219679 | Msa0537530:intron | 45.0% | |
| CTTACACTGGTAGTAGCTAG+TGG | - | chr4_1:16220048-16220067 | Msa0537530:intron | 45.0% | |
| TTAACTGCCGCTCAAGTAAC+CGG | - | chr4_1:16220712-16220731 | Msa0537530:intron | 45.0% | |
| AAAACCATTGCAGACTGCAC+TGG | + | chr4_1:16220799-16220818 | None:intergenic | 45.0% | |
| ACAGGTACAAACGGCCAAAA+TGG | + | chr4_1:16220827-16220846 | None:intergenic | 45.0% | |
| GTGATGAGTGAATAGGAGGT+AGG | - | chr4_1:16221057-16221076 | Msa0537530:intron | 45.0% | |
| ! | GAATAGGAGGTAGGGTTTTC+TGG | - | chr4_1:16221066-16221085 | Msa0537530:intron | 45.0% |
| !!! | GAGGTAGGGTTTTCTGGTTT+TGG | - | chr4_1:16221072-16221091 | Msa0537530:intron | 45.0% |
| !!! | GGTAGGGTTTTCTGGTTTTG+GGG | - | chr4_1:16221074-16221093 | Msa0537530:intron | 45.0% |
| !!! | GTAGGGTTTTCTGGTTTTGG+GGG | - | chr4_1:16221075-16221094 | Msa0537530:intron | 45.0% |
| !!! | TAGGGTTTTCTGGTTTTGGG+GGG | - | chr4_1:16221076-16221095 | Msa0537530:intron | 45.0% |
| !! | TTTTGGGGGGGAAAAAGCAA+CGG | - | chr4_1:16221089-16221108 | Msa0537530:intron | 45.0% |
| CAGCGGCAGTTAACTATTGT+CGG | - | chr4_1:16221132-16221151 | Msa0537530:intron | 45.0% | |
| !! | ACTATTGTCGGTTTCCCCAA+CGG | - | chr4_1:16221144-16221163 | Msa0537530:intron | 45.0% |
| TAGGCAGTTAACTACCGTTG+GGG | + | chr4_1:16221161-16221180 | None:intergenic | 45.0% | |
| GTAGGCAGTTAACTACCGTT+GGG | + | chr4_1:16221162-16221181 | None:intergenic | 45.0% | |
| AGTAGGCAGTTAACTACCGT+TGG | + | chr4_1:16221163-16221182 | None:intergenic | 45.0% | |
| CCAGGTGCATATGAAGCTTA+TGG | + | chr4_1:16221331-16221350 | None:intergenic | 45.0% | |
| CCATAAGCTTCATATGCACC+TGG | - | chr4_1:16221328-16221347 | Msa0537530:intron | 45.0% | |
| GTGAAGTCGTTGAATAGTCC+AGG | + | chr4_1:16221349-16221368 | None:intergenic | 45.0% | |
| CGCGAATAAACTATGTGCGT+TGG | + | chr4_1:16222190-16222209 | None:intergenic | 45.0% | |
| CGCACATAGTTTATTCGCGA+TGG | - | chr4_1:16222191-16222210 | Msa0537530:intron | 45.0% | |
| AAGTATGACAAGAGGACAGG+AGG | - | chr4_1:16222549-16222568 | Msa0537530:intron | 45.0% | |
| !! | CGGAAACACTGCATCGATTA+TGG | + | chr4_1:16222664-16222683 | None:intergenic | 45.0% |
| GAATCTGGCAAATTGAGAGG+AGG | + | chr4_1:16222831-16222850 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTTTTCAATTTA+CGG | + | chr4_1:16218098-16218117 | None:intergenic | 5.0% |
| !!! | ATATTTTTTAATGATTATTA+CGG | - | chr4_1:16218794-16218813 | Msa0537530:intron | 5.0% |
| !! | AAAAATAAAAAGTTAAAAAA+TGG | - | chr4_1:16218908-16218927 | Msa0537530:intron | 5.0% |
| !!! | TATACAATTTTTTTTTTATT+AGG | - | chr4_1:16219310-16219329 | Msa0537530:intron | 5.0% |
| !!! | ATACAATTTTTTTTTTATTA+GGG | - | chr4_1:16219311-16219330 | Msa0537530:intron | 5.0% |
| !!! | TATTTTATTAATTTTTTTAG+AGG | - | chr4_1:16219535-16219554 | Msa0537530:intron | 5.0% |
| !!! | AAAAATAATATAAGTTTTTT+TGG | - | chr4_1:16220273-16220292 | Msa0537530:intron | 5.0% |
| TGGGAAGAGACTCAAGCAAC+AGG | - | chr4_1:16216577-16216596 | Msa0537530:CDS | 50.0% | |
| TGGTTGGGGGATGAAAGTGA+AGG | - | chr4_1:16217773-16217792 | Msa0537530:intron | 50.0% | |
| GGTTGGGGGATGAAAGTGAA+GGG | - | chr4_1:16217774-16217793 | Msa0537530:intron | 50.0% | |
| TCTTTCCGTGCATTTGAGGG+TGG | - | chr4_1:16218206-16218225 | Msa0537530:intron | 50.0% | |
| CCTTTCCACCCTCAAATGCA+CGG | + | chr4_1:16218214-16218233 | None:intergenic | 50.0% | |
| TGGGGAGGAGAGAAAGTTGA+GGG | + | chr4_1:16218316-16218335 | None:intergenic | 50.0% | |
| CAAGATCCGCCACTGAATGA+AGG | + | chr4_1:16219022-16219041 | None:intergenic | 50.0% | |
| TGCCGAAAATATTGGGGGTG+CGG | - | chr4_1:16219040-16219059 | Msa0537530:intron | 50.0% | |
| TATGTGAGGATGGAGAGGAG+AGG | - | chr4_1:16219213-16219232 | Msa0537530:intron | 50.0% | |
| ATGTGAGGATGGAGAGGAGA+GGG | - | chr4_1:16219214-16219233 | Msa0537530:intron | 50.0% | |
| TTCCTTAACCAGTACTCCGG+GGG | + | chr4_1:16219421-16219440 | None:intergenic | 50.0% | |
| CTTCCTTAACCAGTACTCCG+GGG | + | chr4_1:16219422-16219441 | None:intergenic | 50.0% | |
| GCTTCCTTAACCAGTACTCC+GGG | + | chr4_1:16219423-16219442 | None:intergenic | 50.0% | |
| AAAATTCTCGTGCTGGGCAC+AGG | + | chr4_1:16219464-16219483 | None:intergenic | 50.0% | |
| TTGTGGAGAAGTGGGATGTC+CGG | + | chr4_1:16219694-16219713 | None:intergenic | 50.0% | |
| AGCTAGTGGCATAGATCACG+CGG | - | chr4_1:16220062-16220081 | Msa0537530:intron | 50.0% | |
| AGAACCAGTGCAGTCTGCAA+TGG | - | chr4_1:16220792-16220811 | Msa0537530:intron | 50.0% | |
| GTACAAACGGCCAAAATGGC+TGG | + | chr4_1:16220823-16220842 | None:intergenic | 50.0% | |
| !!! | AGGGTTTTCTGGTTTTGGGG+GGG | - | chr4_1:16221077-16221096 | Msa0537530:intron | 50.0% |
| ACGGTAGTTAACTACCGCTG+AGG | - | chr4_1:16221108-16221127 | Msa0537530:intron | 50.0% | |
| CGACAATAGTTAACTGCCGC+TGG | + | chr4_1:16221134-16221153 | None:intergenic | 50.0% | |
| AGTTAACTGCCTACTACCGC+TGG | - | chr4_1:16221168-16221187 | Msa0537530:intron | 50.0% | |
| GTTAACTGCCTACTACCGCT+GGG | - | chr4_1:16221169-16221188 | Msa0537530:intron | 50.0% | |
| TTAACTGCCTACTACCGCTG+GGG | - | chr4_1:16221170-16221189 | Msa0537530:intron | 50.0% | |
| CTTTCAGCTTCTTCCTCGAC+CGG | + | chr4_1:16222684-16222703 | None:intergenic | 50.0% | |
| GCTATAGTGGTAGCTGGTGA+AGG | - | chr4_1:16222723-16222742 | Msa0537530:CDS | 50.0% | |
| CCGTGCATTTGAGGGTGGAA+AGG | - | chr4_1:16218211-16218230 | Msa0537530:intron | 55.0% | |
| GTGGGGAGGAGAGAAAGTTG+AGG | + | chr4_1:16218317-16218336 | None:intergenic | 55.0% | |
| TGTGAGGATGGAGAGGAGAG+GGG | - | chr4_1:16219215-16219234 | Msa0537530:intron | 55.0% | |
| CGGATCTCTATTGAGACCCC+AGG | + | chr4_1:16219349-16219368 | None:intergenic | 55.0% | |
| AAAATGTTGACCGGTGCCCC+CGG | - | chr4_1:16219402-16219421 | Msa0537530:intron | 55.0% | |
| TGTGGAGAAGTGGGATGTCC+GGG | + | chr4_1:16219693-16219712 | None:intergenic | 55.0% | |
| GGTGATCGAGGTTCGAACAC+CGG | - | chr4_1:16220297-16220316 | Msa0537530:intron | 55.0% | |
| ! | AACTGCCGCTGGAGGCTTTT+AGG | + | chr4_1:16220694-16220713 | None:intergenic | 55.0% |
| ! | ACTGCTGCCGGTTACTTGAG+CGG | + | chr4_1:16220722-16220741 | None:intergenic | 55.0% |
| ! | TTAACTGTCGCTGGTGCCAG+CGG | + | chr4_1:16220751-16220770 | None:intergenic | 55.0% |
| GAACGGCAGTTAACTGTCGC+TGG | + | chr4_1:16220760-16220779 | None:intergenic | 55.0% | |
| TTAACTACCGCTGAGGCCAG+CGG | - | chr4_1:16221115-16221134 | Msa0537530:intron | 55.0% | |
| TAACTGCCTACTACCGCTGG+GGG | - | chr4_1:16221171-16221190 | Msa0537530:intron | 55.0% | |
| TTAAAGCCCCCAGCGGTAGT+AGG | + | chr4_1:16221180-16221199 | None:intergenic | 55.0% | |
| GTGAGGATGGAGAGGAGAGG+GGG | - | chr4_1:16219216-16219235 | Msa0537530:intron | 60.0% | |
| ! | TATTGAGACCCCAGGTGCCG+TGG | + | chr4_1:16219341-16219360 | None:intergenic | 60.0% |
| !! | TGCCCCCGGAGTACTGGTTA+AGG | - | chr4_1:16219416-16219435 | Msa0537530:intron | 60.0% |
| GTGGAGAAGTGGGATGTCCG+GGG | + | chr4_1:16219692-16219711 | None:intergenic | 60.0% | |
| CAGCGGCAGTTAACTGCTGC+CGG | + | chr4_1:16220734-16220753 | None:intergenic | 60.0% | |
| ! | TTAACTGCCGCTGGCCTCAG+CGG | + | chr4_1:16221125-16221144 | None:intergenic | 60.0% |
| CGATGCAGTGTTTCCGGTCG+AGG | - | chr4_1:16222668-16222687 | Msa0537530:CDS | 60.0% | |
| ! | AACCAGTACTCCGGGGGCAC+CGG | + | chr4_1:16219415-16219434 | None:intergenic | 65.0% |
| GATGTCCGGGGTTCGAACCC+CGG | + | chr4_1:16219680-16219699 | None:intergenic | 65.0% | |
| CGGCAGTTAACTGCCGCTGG+AGG | + | chr4_1:16220702-16220721 | None:intergenic | 65.0% | |
| GAGCGGCAGTTAACTGCCGC+TGG | + | chr4_1:16220705-16220724 | None:intergenic | 65.0% | |
| CGGCAGCAGTTAACTGCCGC+TGG | - | chr4_1:16220732-16220751 | Msa0537530:intron | 65.0% | |
| !! | TTAGGGGGTGCCACGGCACC+TGG | - | chr4_1:16219328-16219347 | Msa0537530:intron | 70.0% |
| !! | TAGGGGGTGCCACGGCACCT+GGG | - | chr4_1:16219329-16219348 | Msa0537530:intron | 70.0% |
| !! | AGGGGGTGCCACGGCACCTG+GGG | - | chr4_1:16219330-16219349 | Msa0537530:intron | 75.0% |
| GACCGGTGCCCCCGGAGTAC+TGG | - | chr4_1:16219410-16219429 | Msa0537530:intron | 75.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | - | chr4_1:16219672-16219691 | Msa0537530:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 16216569 | 16222899 | 16216569 | ID=Msa0537530;Name=Msa0537530 |
| chr4_1 | mRNA | 16216569 | 16222899 | 16216569 | ID=Msa0537530-mRNA-1;Parent=Msa0537530;Name=Msa0537530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|261 |
| chr4_1 | exon | 16222651 | 16222899 | 16222651 | ID=Msa0537530-mRNA-1:exon:4850;Parent=Msa0537530-mRNA-1 |
| chr4_1 | exon | 16217503 | 16217668 | 16217503 | ID=Msa0537530-mRNA-1:exon:4849;Parent=Msa0537530-mRNA-1 |
| chr4_1 | exon | 16216569 | 16216939 | 16216569 | ID=Msa0537530-mRNA-1:exon:4848;Parent=Msa0537530-mRNA-1 |
| chr4_1 | CDS | 16222651 | 16222899 | 16222651 | ID=Msa0537530-mRNA-1:cds;Parent=Msa0537530-mRNA-1 |
| chr4_1 | CDS | 16217503 | 16217668 | 16217503 | ID=Msa0537530-mRNA-1:cds;Parent=Msa0537530-mRNA-1 |
| chr4_1 | CDS | 16216569 | 16216939 | 16216569 | ID=Msa0537530-mRNA-1:cds;Parent=Msa0537530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
