AlfalfaGEDB | Msa1331950

M. sativa cultivar zhongmu-4 / Msa1331950

KEGG: -
GO: -
PFAM: PF02298.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1331950	XP_003609366.1	97.297	370	10	0	1	370	1	370	0.0	704

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1331950	sp\|O82081\|UCC1_ARATH	41.497	147	82	2	9	155	6	148	2.07e-29	117
Msa1331950	sp\|O82081\|UCC1_ARATH	39.716	141	78	2	191	331	26	159	7.58e-23	99.8

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1331950	G7JE55	97.297	370	10	0	1	370	1	370	0.0	704

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026420	Msa1331950	0.804592	2.005720e-49	-8.615850e-47
Msa0030800	Msa1331950	0.800202	1.609590e-48	-8.615850e-47
Msa0046680	Msa1331950	0.826632	2.438728e-54	-8.615850e-47
Msa0051480	Msa1331950	0.812366	4.395630e-51	-8.615850e-47
Msa0051620	Msa1331950	0.813560	2.406166e-51	-8.615850e-47
Msa0051730	Msa1331950	0.813345	2.683300e-51	-8.615850e-47
Msa0076640	Msa1331950	0.816084	6.637064e-52	-8.615850e-47
Msa0076650	Msa1331950	0.814831	1.261000e-51	-8.615850e-47
Msa0109270	Msa1331950	0.818393	2.006738e-52	-8.615850e-47
Msa0134570	Msa1331950	0.804182	2.442411e-49	-8.615850e-47

Showing 1 to 10 of 80 entries

Previous1 2 3 4 5…8Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1331950	MtrunA17_Chr4g0064041	97.297	370	10	0	1	370	1	370	0.0	704
Msa1331950	MtrunA17_Chr6g0483981	52.475	202	66	5	1	184	1	190	6.81e-51	178
Msa1331950	MtrunA17_Chr6g0483981	48.227	141	66	3	190	327	26	162	1.95e-31	125
Msa1331950	MtrunA17_Chr2g0306461	46.875	128	65	3	1	128	1	125	1.58e-31	118
Msa1331950	MtrunA17_Chr2g0306461	47.273	110	56	2	181	290	18	125	5.99e-28	108
Msa1331950	MtrunA17_Chr5g0394321	43.885	139	70	4	29	166	26	157	2.43e-31	117
Msa1331950	MtrunA17_Chr5g0394321	37.931	174	85	4	190	362	25	176	1.71e-30	115
Msa1331950	MtrunA17_Chr4g0033131	44.531	128	66	4	3	128	5	129	1.09e-30	115
Msa1331950	MtrunA17_Chr4g0033131	42.017	119	65	2	185	301	22	138	5.30e-26	102
Msa1331950	MtrunA17_Chr4g0033531	44.531	128	66	4	3	128	5	129	1.09e-30	115

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1331950	AT2G32300.1	41.497	147	82	2	9	155	6	148	2.10e-30	117
Msa1331950	AT2G32300.1	39.716	141	78	2	191	331	26	159	7.70e-24	99.8
Msa1331950	AT2G32300.2	41.497	147	82	2	9	155	36	178	7.63e-30	116
Msa1331950	AT2G32300.2	39.716	141	78	2	191	331	56	189	2.47e-23	99.0
Msa1331950	AT2G31050.1	39.655	174	96	2	10	177	10	180	2.11e-29	112
Msa1331950	AT2G31050.1	42.017	119	66	1	185	303	23	138	5.92e-25	100
Msa1331950	AT5G20230.1	46.721	122	63	2	31	151	27	147	1.95e-28	110
Msa1331950	AT5G20230.1	37.430	179	105	3	191	369	25	196	3.34e-28	109
Msa1331950	AT3G17675.1	51.923	104	42	3	27	128	30	127	5.21e-28	107
Msa1331950	AT3G17675.1	40.000	100	56	1	191	290	32	127	2.04e-20	86.7

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

Find 154 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACCGGCACCAACCA+AGG	0.541334	8_4:+51711764	Msa1331950:CDS
AAAATGCAGCTGCAATTGAG+AGG	0.622849	8_4:-51712946	None:intergenic
AACATTAAGGTTCTTTGCCA+TGG	0.467663	8_4:-51711212	None:intergenic
AACTCCAAGAGACGCGGCAC+CGG	0.528242	8_4:-51712903	None:intergenic
AACTCCGGTGCCGCGTCTCT+TGG	0.359466	8_4:+51712899	Msa1331950:CDS
AACTTCATTTGTGCCGTTCC+AGG	0.347262	8_4:+51711618	Msa1331950:CDS
AAGAACTAAGACACGCTCAT+AGG	0.421558	8_4:-51710947	None:intergenic
AAGCAGTAGTAGATGGTGCT+GGG	0.527160	8_4:-51711800	None:intergenic
AAGGAGAAGGTGATGTGGCA+GGG	0.559165	8_4:-51712751	None:intergenic
ACAGCGGACTATCAGAATCA+CGG	0.656084	8_4:+51713247	Msa1331950:three_prime_UTR

Showing 1 to 10 of 154 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTGATACGTTCCAACATTA+TGG	-	chr8_4:51710986-51711005	None:intergenic	30.0%
GTTGGTATTTATAGGGAAAA+AGG	-	chr8_4:51711051-51711070	None:intergenic	30.0%
GCATATTCCTATAAAAACAG+GGG	+	chr8_4:51711145-51711164	Msa1331950:five_prime_UTR	30.0%
CAGTGTTAGATTTGATTAAC+CGG	+	chr8_4:51712061-51712080	Msa1331950:intron	30.0%
AGTGTTAGATTTGATTAACC+GGG	+	chr8_4:51712062-51712081	Msa1331950:intron	30.0%
TTAACCAGGTTGTTGAATTT+AGG	+	chr8_4:51712396-51712415	Msa1331950:intron	30.0%
AGAGTAACACTTAACAAAAC+TGG	+	chr8_4:51712644-51712663	Msa1331950:CDS	30.0%
TTTGATACGTTCCAACATTA+TGG	-	chr8_4:51710986-51711005	None:intergenic	30.0%
GTTGGTATTTATAGGGAAAA+AGG	-	chr8_4:51711051-51711070	None:intergenic	30.0%
GCATATTCCTATAAAAACAG+GGG	+	chr8_4:51711145-51711164	Msa1331950:five_prime_UTR	30.0%

Showing 1 to 10 of 398 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	51710932	51713314	51710932	ID=Msa1331950;Name=Msa1331950
chr8_4	mRNA	51710932	51713314	51710932	ID=Msa1331950-mRNA-1;Parent=Msa1331950;Name=Msa1331950-mRNA-1;_AED=0.12;_eAED=0.12;_QI=282\|1\|1\|1\|1\|1\|3\|338\|370
chr8_4	exon	51710932	51711400	51710932	ID=Msa1331950-mRNA-1:exon:15332;Parent=Msa1331950-mRNA-1
chr8_4	exon	51711481	51711966	51711481	ID=Msa1331950-mRNA-1:exon:15333;Parent=Msa1331950-mRNA-1
chr8_4	exon	51712537	51713314	51712537	ID=Msa1331950-mRNA-1:exon:15334;Parent=Msa1331950-mRNA-1
chr8_4	five_prime_UTR	51710932	51711213	51710932	ID=Msa1331950-mRNA-1:five_prime_utr;Parent=Msa1331950-mRNA-1
chr8_4	CDS	51711214	51711400	51711214	ID=Msa1331950-mRNA-1:cds;Parent=Msa1331950-mRNA-1
chr8_4	CDS	51711481	51711966	51711481	ID=Msa1331950-mRNA-1:cds;Parent=Msa1331950-mRNA-1
chr8_4	CDS	51712537	51712976	51712537	ID=Msa1331950-mRNA-1:cds;Parent=Msa1331950-mRNA-1
chr8_4	three_prime_UTR	51712977	51713314	51712977	ID=Msa1331950-mRNA-1:three_prime_utr;Parent=Msa1331950-mRNA-1

Gene Sequence

>Msa1331950

ATGGCAAAGAACCTTAATGTTCTTGTTTTTGTTCTACTTGCAGTTGCTGCAAACCTGTTCCATGGATCATTTGCACAAACAAGACATGTGGTTGGTGATACCACAGGTTGGACTATCCCAACCAACGGTGCTTCATTCTATACCAACTGGGCTTCCAACAAAACCTTCACTGTAGGCGACACTCTCGTGTTCAATTATGCAAGTGGACAACATGATGTTGCTAAGGTAACAAAAACAGCTTACGATAGTTGCAATGGAGCAAACACACTTTTCACCTTAACAAACAGTCCAGCTACCGTGACATTGAACGAAACAGGACAACAAAACTTCATTTGTGCCGTTCCAGGACATTGTTCAGCTGGACAAAAACTTTCAATTAACGTTGTTAAAGCTTCTACTTCACCTGTTTCTGCTCCAACTCCAAGTGCTTCTCCACCTAAGGCTACTCCAGCTCCTACCCCTGTTCCAGCAAAAGCACCGGCACCAACCAAGGCCGCTACACCTGCCCCAGCACCATCTACTACTGCTTCACCAACACCTGCTCCAGCTCCTGCTACTGGACCTGTTACTTACACCGTCGGTGACACCATTGGCTGGACCATTCCATCTAACGGTGCTGCTGCTTATACAACCTGGGCTTCTCGCAAGTCTTTCAAAGTTGGAGACATCCTTGTTTTCAATTTCCAATTGAATGCACACAACGTGGAAGAAGTGACAAAGGAAAAGTATGATTCATGCAACTCAGCTTCTCCAATTGCAACTTTCAGCAACCCACCAGTGAGAGTAACACTTAACAAAACTGGTACTCATTACTATATCTGTGGTGTTACTGGACACTGCTCTGCAGGCCAAAAGCTTTCCATCAATGTTGGTAGTGGTAGCAGCAGCCCTGCCACATCACCTTCTCCTTCCGCCTCATCGCCTTCTCCTTCCACAGGTGCCACTCCGCCTTCCGCCTCCGGTTCTCCCTCACCGGGGTCTCCTGTCACCCCTTCTTCCCAGTCTCCAGGTGGTTCTGTCAGCCCCCCTCCTGAGAACTCCGGTGCCGCGTCTCTTGGAGTTGCCGGGTTATTTGTCACCGTCCTCTCAATTGCAGCTGCATTTTTCTGTTAG

Protein sequence

>Msa1331950

MAKNLNVLVFVLLAVAANLFHGSFAQTRHVVGDTTGWTIPTNGASFYTNWASNKTFTVGDTLVFNYASGQHDVAKVTKTAYDSCNGANTLFTLTNSPATVTLNETGQQNFICAVPGHCSAGQKLSINVVKASTSPVSAPTPSASPPKATPAPTPVPAKAPAPTKAATPAPAPSTTASPTPAPAPATGPVTYTVGDTIGWTIPSNGAAAYTTWASRKSFKVGDILVFNFQLNAHNVEEVTKEKYDSCNSASPIATFSNPPVRVTLNKTGTHYYICGVTGHCSAGQKLSINVGSGSSSPATSPSPSASSPSPSTGATPPSASGSPSPGSPVTPSSQSPGGSVSPPPENSGAASLGVAGLFVTVLSIAAAFFC*