Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749510 | XP_003610767.1 | 96.765 | 371 | 12 | 0 | 1 | 371 | 1 | 371 | 0.0 | 750 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749510 | sp|B9FSC8|OPR11_ORYSJ | 77.198 | 364 | 81 | 1 | 7 | 370 | 2 | 363 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749510 | G7K3S2 | 96.765 | 371 | 12 | 0 | 1 | 371 | 1 | 371 | 0.0 | 750 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073970 | Msa0749510 | 0.806139 | 9.511481e-50 | -8.615850e-47 |
| Msa0622070 | Msa0749510 | 0.832108 | 1.140758e-55 | -8.615850e-47 |
| Msa0652700 | Msa0749510 | 0.807877 | 4.077632e-50 | -8.615850e-47 |
| Msa0721260 | Msa0749510 | 0.800392 | 1.472501e-48 | -8.615850e-47 |
| Msa0738400 | Msa0749510 | 0.801751 | 7.767751e-49 | -8.615850e-47 |
| Msa0749500 | Msa0749510 | 0.991287 | 7.421393e-187 | -8.615850e-47 |
| Msa0749510 | Msa0753410 | 0.806671 | 7.343596e-50 | -8.615850e-47 |
| Msa0749510 | Msa0793910 | 0.985385 | 2.115936e-163 | -8.615850e-47 |
| Msa0749510 | Msa0831430 | 0.995516 | 4.674673e-217 | -8.615850e-47 |
| Msa0749510 | Msa0979050 | 0.833817 | 4.289516e-56 | -8.615850e-47 |
| Msa0749510 | Msa0986160 | 0.835110 | 2.030095e-56 | -8.615850e-47 |
| Msa0749510 | Msa1039650 | 0.852917 | 3.368998e-61 | -8.615850e-47 |
| Msa0749510 | Msa1069770 | 0.802301 | 5.986249e-49 | -8.615850e-47 |
| Msa0749510 | Msa1174450 | 0.800809 | 1.211044e-48 | -8.615850e-47 |
| Msa0749510 | Msa1304980 | 0.839456 | 1.567675e-57 | -8.615850e-47 |
| Msa0749510 | Msa1314810 | 0.807660 | 4.534938e-50 | -8.615850e-47 |
| Msa0749510 | Msa1398110 | 0.804627 | 1.972608e-49 | -8.615850e-47 |
| Msa0749510 | Msa1412410 | 0.805088 | 1.580244e-49 | -8.615850e-47 |
| Msa0749510 | Msa1427860 | 0.814924 | 1.202445e-51 | -8.615850e-47 |
| Msa0749510 | Msa1459930 | 0.807119 | 5.905133e-50 | -8.615850e-47 |
| Msa0121970 | Msa0749510 | 0.813296 | 2.750411e-51 | -8.615850e-47 |
| Msa0128030 | Msa0749510 | 0.807228 | 5.601445e-50 | -8.615850e-47 |
| Msa0129640 | Msa0749510 | 0.813835 | 2.093109e-51 | -8.615850e-47 |
| Msa0166620 | Msa0749510 | 0.825762 | 3.927012e-54 | -8.615850e-47 |
| Msa0194370 | Msa0749510 | -0.807157 | 5.798251e-50 | -8.615850e-47 |
| Msa0381470 | Msa0749510 | 0.807847 | 4.138185e-50 | -8.615850e-47 |
| Msa0387300 | Msa0749510 | 0.850828 | 1.319538e-60 | -8.615850e-47 |
| Msa0416040 | Msa0749510 | 0.811404 | 7.121265e-51 | -8.615850e-47 |
| Msa0434140 | Msa0749510 | 0.818442 | 1.956273e-52 | -8.615850e-47 |
| Msa0455830 | Msa0749510 | 0.954665 | 1.770015e-112 | -8.615850e-47 |
| Msa0459630 | Msa0749510 | 0.804886 | 1.741862e-49 | -8.615850e-47 |
| Msa0463890 | Msa0749510 | 0.824304 | 8.679249e-54 | -8.615850e-47 |
| Msa0477660 | Msa0749510 | 0.837128 | 6.238234e-57 | -8.615850e-47 |
| Msa0489070 | Msa0749510 | 0.810050 | 1.397302e-50 | -8.615850e-47 |
| Msa0509420 | Msa0749510 | 0.809502 | 1.833129e-50 | -8.615850e-47 |
| Msa0521720 | Msa0749510 | 0.834480 | 2.924655e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749510 | MtrunA17_Chr5g0394861 | 96.765 | 371 | 12 | 0 | 1 | 371 | 1 | 371 | 0.0 | 750 |
| Msa0749510 | MtrunA17_Chr5g0394891 | 91.914 | 371 | 28 | 1 | 1 | 371 | 1 | 369 | 0.0 | 713 |
| Msa0749510 | MtrunA17_Chr5g0394841 | 87.871 | 371 | 45 | 0 | 1 | 371 | 1 | 371 | 0.0 | 692 |
| Msa0749510 | MtrunA17_Chr5g0394751 | 86.104 | 367 | 43 | 3 | 5 | 371 | 1 | 359 | 0.0 | 650 |
| Msa0749510 | MtrunA17_Chr5g0394811 | 83.014 | 365 | 60 | 1 | 7 | 371 | 116 | 478 | 0.0 | 642 |
| Msa0749510 | MtrunA17_Chr5g0394811 | 60.403 | 149 | 47 | 4 | 18 | 157 | 1 | 146 | 2.93e-48 | 169 |
| Msa0749510 | MtrunA17_Chr5g0394771 | 84.110 | 365 | 50 | 3 | 7 | 371 | 35 | 391 | 0.0 | 635 |
| Msa0749510 | MtrunA17_Chr5g0395841 | 80.270 | 370 | 71 | 1 | 1 | 370 | 3 | 370 | 0.0 | 627 |
| Msa0749510 | MtrunA17_Chr3g0144001 | 69.231 | 364 | 106 | 2 | 8 | 371 | 6 | 363 | 0.0 | 531 |
| Msa0749510 | MtrunA17_Chr4g0070561 | 53.083 | 373 | 158 | 5 | 12 | 370 | 19 | 388 | 7.12e-139 | 400 |
| Msa0749510 | MtrunA17_Chr5g0394791 | 69.347 | 199 | 53 | 2 | 4 | 202 | 3 | 193 | 1.41e-92 | 275 |
| Msa0749510 | MtrunA17_Chr5g0394801 | 65.641 | 195 | 40 | 1 | 169 | 363 | 18 | 185 | 1.87e-84 | 256 |
| Msa0749510 | MtrunA17_Chr3g0130471 | 70.909 | 55 | 13 | 1 | 196 | 250 | 1 | 52 | 2.03e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749510 | AT1G76690.1 | 76.280 | 371 | 86 | 1 | 1 | 371 | 3 | 371 | 0.0 | 602 |
| Msa0749510 | AT1G76680.1 | 76.860 | 363 | 82 | 1 | 9 | 371 | 9 | 369 | 0.0 | 594 |
| Msa0749510 | AT1G76680.2 | 71.907 | 388 | 82 | 2 | 9 | 371 | 9 | 394 | 0.0 | 580 |
| Msa0749510 | AT1G09400.1 | 68.675 | 332 | 96 | 2 | 18 | 349 | 1 | 324 | 5.75e-174 | 487 |
| Msa0749510 | AT1G09400.2 | 70.741 | 270 | 73 | 1 | 80 | 349 | 2 | 265 | 3.83e-144 | 409 |
| Msa0749510 | AT2G06050.2 | 51.194 | 377 | 163 | 5 | 12 | 370 | 12 | 385 | 3.66e-135 | 391 |
| Msa0749510 | AT2G06050.1 | 51.194 | 377 | 163 | 5 | 12 | 370 | 12 | 385 | 3.66e-135 | 391 |
| Msa0749510 | AT2G06050.3 | 51.194 | 377 | 163 | 5 | 12 | 370 | 12 | 385 | 3.66e-135 | 391 |
| Msa0749510 | AT1G17990.1 | 70.000 | 260 | 71 | 3 | 9 | 268 | 6 | 258 | 2.21e-134 | 385 |
| Msa0749510 | AT1G18020.1 | 70.000 | 260 | 71 | 3 | 9 | 268 | 6 | 258 | 2.21e-134 | 385 |
| Msa0749510 | AT1G17990.2 | 66.923 | 260 | 71 | 4 | 9 | 268 | 6 | 250 | 1.15e-125 | 362 |
Find 121 sgRNAs with CRISPR-Local
Find 487 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTACTCCTTACAAAAT+TGG | 0.174707 | 5_2:+3044684 | Msa0749510:CDS |
| GCAAATCTCTTTGGCAAATC+TGG | 0.201994 | 5_2:-3045998 | None:intergenic |
| GTTGGAAGAGTTTCTGATTC+TGG | 0.251518 | 5_2:+3045066 | Msa0749510:CDS |
| TAACGAATTGGGACTTTATA+TGG | 0.259709 | 5_2:+3045751 | Msa0749510:CDS |
| GCTTACTCTTACTAACTCTT+TGG | 0.280591 | 5_2:+3046250 | Msa0749510:three_prime_UTR |
| ATCACGTAATCAAGTGAAAA+TGG | 0.288181 | 5_2:+3044632 | Msa0749510:exon |
| TACATTTCTGATCCAGTTCT+AGG | 0.288195 | 5_2:+3046061 | Msa0749510:CDS |
| ATTTCATTTCAGAGTTGTTT+TGG | 0.300909 | 5_2:+3044798 | Msa0749510:intron |
| GTCAATGCCCTCAATAAATA+TGG | 0.304167 | 5_2:+3045773 | Msa0749510:CDS |
| AAAGGCACTTTCATGGTTGC+AGG | 0.311740 | 5_2:+3045890 | Msa0749510:CDS |
| CTCCTCTGAACAAGTATAAC+AGG | 0.317873 | 5_2:+3046029 | Msa0749510:CDS |
| CTCATCGGCACAAGGCTGTC+GGG | 0.347385 | 5_2:-3045857 | None:intergenic |
| ATCCAGACACGCCAGGTATA+TGG | 0.350535 | 5_2:+3044959 | Msa0749510:CDS |
| GTCCATATACCTGGCGTGTC+TGG | 0.353329 | 5_2:-3044961 | None:intergenic |
| TCAATGCCATAGCTGAAAAC+AGG | 0.384447 | 5_2:+3045936 | Msa0749510:CDS |
| AGACTCCAACCCTAACGAAT+TGG | 0.384935 | 5_2:+3045739 | Msa0749510:CDS |
| GGCCTTCAAAGGCACTTTCA+TGG | 0.385984 | 5_2:+3045883 | Msa0749510:CDS |
| AAACCATTACTTCGAATTTG+TGG | 0.394649 | 5_2:-3045250 | None:intergenic |
| CCAGTTTCTTCATTCAAGAA+AGG | 0.397020 | 5_2:-3046098 | None:intergenic |
| TGGTATTCTTTACTGTCATA+TGG | 0.399133 | 5_2:+3045793 | Msa0749510:CDS |
| ATATAAAGTCCCAATTCGTT+AGG | 0.406105 | 5_2:-3045749 | None:intergenic |
| GCATCAAGTGCAAATCTCTT+TGG | 0.407422 | 5_2:-3046007 | None:intergenic |
| GAGATAGGAGCTGATAAAGT+TGG | 0.416753 | 5_2:+3045677 | Msa0749510:CDS |
| GACTCCAACCCTAACGAATT+GGG | 0.419325 | 5_2:+3045740 | Msa0749510:CDS |
| GAACCGTTGTCGGTTTGCTT+TGG | 0.420051 | 5_2:+3045631 | Msa0749510:CDS |
| AGGGCAGACCTTGTTGTCTA+TGG | 0.429742 | 5_2:+3045956 | Msa0749510:CDS |
| CCTTTCTTGAATGAAGAAAC+TGG | 0.431717 | 5_2:+3046098 | Msa0749510:exon |
| TCATCTGTCCTTAGCCGCCT+TGG | 0.434930 | 5_2:-3045295 | None:intergenic |
| AACCATGAAAGTGCCTTTGA+AGG | 0.438354 | 5_2:-3045885 | None:intergenic |
| GCAAATTCGATCTATCTCAT+AGG | 0.439650 | 5_2:+3044706 | Msa0749510:CDS |
| AAAGAATACCATATTTATTG+AGG | 0.443514 | 5_2:-3045781 | None:intergenic |
| GTGCAAATTGCAGGATTTGA+TGG | 0.444981 | 5_2:+3045515 | Msa0749510:intron |
| CAGTTTCTTCATTCAAGAAA+GGG | 0.456188 | 5_2:-3046097 | None:intergenic |
| CTAAAGAGCACGTCGAGGCT+TGG | 0.460997 | 5_2:+3044983 | Msa0749510:CDS |
| GCATGAACAGCATCCACAAT+GGG | 0.464445 | 5_2:-3045009 | None:intergenic |
| GACTTATCTGTAGATGATAT+TGG | 0.464557 | 5_2:-3045220 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.470052 | 5_2:+3045596 | Msa0749510:CDS |
| CATTCTGCATATTCTGCAAA+AGG | 0.473703 | 5_2:-3045713 | None:intergenic |
| TCTCATCGGCACAAGGCTGT+CGG | 0.479067 | 5_2:-3045858 | None:intergenic |
| TTTGATGGGGTTGAAATCCA+TGG | 0.479079 | 5_2:+3045530 | Msa0749510:CDS |
| TAGTCAGTATAACCTAGAAC+TGG | 0.480015 | 5_2:-3046073 | None:intergenic |
| GTCAGAGACACCGGTAGCTT+CGG | 0.483228 | 5_2:-3044923 | None:intergenic |
| CAGCCTTGTGCCGATGAGAA+AGG | 0.488883 | 5_2:+3045862 | Msa0749510:CDS |
| GTTGAAATCCATGGGGCTCA+TGG | 0.498562 | 5_2:+3045539 | Msa0749510:CDS |
| GATATTGGTGCCTGTCCATT+CGG | 0.502015 | 5_2:-3045205 | None:intergenic |
| TAGAGGATAGCATGAGGTTG+TGG | 0.502110 | 5_2:-3044856 | None:intergenic |
| TGCAAATTGCAGGATTTGAT+GGG | 0.502113 | 5_2:+3045516 | Msa0749510:intron |
| CATTTACAAAATGTGTGAAT+GGG | 0.503904 | 5_2:-3046275 | None:intergenic |
| CAGAGAGCCACCGGCTCTAA+CGG | 0.506975 | 5_2:+3044886 | Msa0749510:CDS |
| ACACCACAAATTCGAAGTAA+TGG | 0.507759 | 5_2:+3045247 | Msa0749510:CDS |
| CTCACAAGACAAAGATCCTA+TGG | 0.508545 | 5_2:+3044826 | Msa0749510:CDS |
| CGTAATCAAGTGAAAATGGC+TGG | 0.509462 | 5_2:+3044636 | Msa0749510:exon |
| CCATTTACAAAATGTGTGAA+TGG | 0.510823 | 5_2:-3046276 | None:intergenic |
| AAGAATACCATATTTATTGA+GGG | 0.515388 | 5_2:-3045780 | None:intergenic |
| ATGCCAAATCTGACAAAAGA+AGG | 0.517640 | 5_2:-3045043 | None:intergenic |
| GAAGCTGTTGCAAATGAGAT+AGG | 0.518438 | 5_2:+3045662 | Msa0749510:CDS |
| TTAGTAAGAGTAAGCTTGAG+AGG | 0.520497 | 5_2:-3046242 | None:intergenic |
| TCATCGGCACAAGGCTGTCG+GGG | 0.521557 | 5_2:-3045856 | None:intergenic |
| TATAAAGTCCCAATTCGTTA+GGG | 0.522588 | 5_2:-3045748 | None:intergenic |
| GTAAGGAGTAAGAAGAGGAA+TGG | 0.526420 | 5_2:-3044676 | None:intergenic |
| TGGCTCTCTGTGAATAATAG+AGG | 0.529112 | 5_2:-3044873 | None:intergenic |
| GATCCCTTGAGAACCGTTGT+CGG | 0.529555 | 5_2:+3045621 | Msa0749510:CDS |
| TTGATGGGGTTGAAATCCAT+GGG | 0.529612 | 5_2:+3045531 | Msa0749510:CDS |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5_2:-3045565 | None:intergenic |
| CAAACCGACAACGGTTCTCA+AGG | 0.533263 | 5_2:-3045625 | None:intergenic |
| TAGTGAGGAGATTCCACACT+TGG | 0.535155 | 5_2:-3046132 | None:intergenic |
| TCTGTCCTTAGCCGCCTTGG+TGG | 0.535739 | 5_2:-3045292 | None:intergenic |
| AAGTCCCAATTCGTTAGGGT+TGG | 0.539732 | 5_2:-3045744 | None:intergenic |
| TCACACCACCAAGGCGGCTA+AGG | 0.540861 | 5_2:+3045287 | Msa0749510:CDS |
| ACTTGCTGCTAGAAATGCTA+TGG | 0.544349 | 5_2:+3045345 | Msa0749510:CDS |
| GTGGATGCTGTTCATGCTAA+AGG | 0.544472 | 5_2:+3045015 | Msa0749510:CDS |
| GCTAGAAATGCTATGGAAGC+TGG | 0.548470 | 5_2:+3045352 | Msa0749510:CDS |
| CAAGGGTATCCAGACACGCC+AGG | 0.555989 | 5_2:+3044952 | Msa0749510:CDS |
| TTGATACTTAAAGTGGAAAG+TGG | 0.556511 | 5_2:-3039006 | None:intergenic |
| GGTGTCTCTGACACCGCTCA+AGG | 0.561959 | 5_2:+3044934 | Msa0749510:CDS |
| AGTTTATCAGCCGAATGGAC+AGG | 0.564367 | 5_2:+3045195 | Msa0749510:intron |
| GAGAAGACCTCCGTTAGAGC+CGG | 0.566754 | 5_2:-3044896 | None:intergenic |
| CCTTTGAAGGCCTTTCTCAT+CGG | 0.568654 | 5_2:-3045872 | None:intergenic |
| GGAGGTTACGACCGACATGA+TGG | 0.569456 | 5_2:+3045911 | Msa0749510:CDS |
| CTTCTCATAACCGAAGCTAC+CGG | 0.572746 | 5_2:+3044913 | Msa0749510:CDS |
| AGGCCTTTCTCATCGGCACA+AGG | 0.573077 | 5_2:-3045865 | None:intergenic |
| TAGCAGAAAGCAATCTGCAA+GGG | 0.577000 | 5_2:-3046169 | None:intergenic |
| TATTATTCACAGAGAGCCAC+CGG | 0.583608 | 5_2:+3044877 | Msa0749510:CDS |
| TCAACAGTTTATCAGCCGAA+TGG | 0.583793 | 5_2:+3045190 | Msa0749510:intron |
| CCGATGAGAAAGGCCTTCAA+AGG | 0.584601 | 5_2:+3045872 | Msa0749510:CDS |
| TGCTCTTTAGTCCATATACC+TGG | 0.585344 | 5_2:-3044970 | None:intergenic |
| AGGTTGTGGAACGTTGCCAT+AGG | 0.592868 | 5_2:-3044842 | None:intergenic |
| GGCACTTTCATGGTTGCAGG+AGG | 0.593746 | 5_2:+3045893 | Msa0749510:CDS |
| GATAATGAACTTATTTAGTG+AGG | 0.593789 | 5_2:-3046147 | None:intergenic |
| TTTGCAGAATATGCAGAATG+TGG | 0.598992 | 5_2:+3045716 | Msa0749510:CDS |
| AAGACCTCCGTTAGAGCCGG+TGG | 0.607283 | 5_2:-3044893 | None:intergenic |
| GAGGTTACGACCGACATGAT+GGG | 0.607847 | 5_2:+3045912 | Msa0749510:CDS |
| TAGGATCTTTGTCTTGTGAG+TGG | 0.610235 | 5_2:-3044823 | None:intergenic |
| AGTTTCTTCATTCAAGAAAG+GGG | 0.611551 | 5_2:-3046096 | None:intergenic |
| TCCCTGTTATACTTGTTCAG+AGG | 0.614414 | 5_2:-3046031 | None:intergenic |
| GTGTCTCTGACACCGCTCAA+GGG | 0.616121 | 5_2:+3044935 | Msa0749510:CDS |
| CGAGGCTTGGAAACCCATTG+TGG | 0.618914 | 5_2:+3044996 | Msa0749510:CDS |
| CTTCCAAAGCAAACCGACAA+CGG | 0.620487 | 5_2:-3045634 | None:intergenic |
| CAATGCCATAGCTGAAAACA+GGG | 0.621098 | 5_2:+3045937 | Msa0749510:CDS |
| TATTCTTTACTGTCATATGG+TGG | 0.623581 | 5_2:+3045796 | Msa0749510:CDS |
| GTAGGTAGCCATGAGCCCCA+TGG | 0.625089 | 5_2:-3045547 | None:intergenic |
| AAACCGACAACGGTTCTCAA+GGG | 0.626011 | 5_2:-3045624 | None:intergenic |
| AGCATGAACAGCATCCACAA+TGG | 0.632785 | 5_2:-3045010 | None:intergenic |
| TTGAGCGGTGTCAGAGACAC+CGG | 0.633714 | 5_2:-3044932 | None:intergenic |
| ATACTTAAAGTGGAAAGTGG+CGG | 0.640817 | 5_2:-3039003 | None:intergenic |
| ATAGCAGAAAGCAATCTGCA+AGG | 0.641986 | 5_2:-3046170 | None:intergenic |
| ATTTACAAAATGTGTGAATG+GGG | 0.642740 | 5_2:-3046274 | None:intergenic |
| GAACCAAGAATGAAAACTGT+TGG | 0.645257 | 5_2:+3045818 | Msa0749510:CDS |
| GACAGAACAGATGAATATGG+TGG | 0.647355 | 5_2:+3045599 | Msa0749510:CDS |
| AGAGCCACCGGCTCTAACGG+AGG | 0.647688 | 5_2:+3044889 | Msa0749510:CDS |
| TGGCATTGATCCCATCATGT+CGG | 0.655421 | 5_2:-3045922 | None:intergenic |
| GCAAATTGCAGGATTTGATG+GGG | 0.659323 | 5_2:+3045517 | Msa0749510:intron |
| TCCTCTGAACAAGTATAACA+GGG | 0.662663 | 5_2:+3046030 | Msa0749510:CDS |
| ACAAACGACCATAGACAACA+AGG | 0.681842 | 5_2:-3045964 | None:intergenic |
| TTGCAAAATTCACACCACCA+AGG | 0.704294 | 5_2:+3045278 | Msa0749510:CDS |
| CGTGTCTGGATACCCTTGAG+CGG | 0.705121 | 5_2:-3044947 | None:intergenic |
| GGTGCTGTAGCATCCAAGTG+TGG | 0.706367 | 5_2:+3046119 | Msa0749510:three_prime_UTR |
| GAATAATAGAGGATAGCATG+AGG | 0.726209 | 5_2:-3044862 | None:intergenic |
| TGATGGGGTTGAAATCCATG+GGG | 0.726824 | 5_2:+3045532 | Msa0749510:CDS |
| CAAAATTCACACCACCAAGG+CGG | 0.740755 | 5_2:+3045281 | Msa0749510:CDS |
| ATGGACTAAAGAGCACGTCG+AGG | 0.748737 | 5_2:+3044978 | Msa0749510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATATGTTGAAATTTAA+CGG | + | chr5_2:3039274-3039293 | Msa0749510:intron | 10.0% |
| !!! | TTACTCTTTATTTTTATAAA+TGG | - | chr5_2:3039650-3039669 | None:intergenic | 10.0% |
| !! | GAAATTAAAAAAAAATATTG+TGG | - | chr5_2:3040027-3040046 | None:intergenic | 10.0% |
| !!! | GCATATTTTAATTTTATTTT+TGG | - | chr5_2:3040231-3040250 | None:intergenic | 10.0% |
| !!! | ATGATTTTATTTTTCTTAAA+TGG | + | chr5_2:3040370-3040389 | Msa0749510:intron | 10.0% |
| !!! | ATATAAATTTTACTTTTCAA+AGG | + | chr5_2:3040513-3040532 | Msa0749510:intron | 10.0% |
| !! | ATATCCATTTATAAAAATAA+GGG | - | chr5_2:3040611-3040630 | None:intergenic | 10.0% |
| !! | TATATCCATTTATAAAAATA+AGG | - | chr5_2:3040612-3040631 | None:intergenic | 10.0% |
| !! | CTATTATTTATTAGTAATAT+GGG | - | chr5_2:3042990-3043009 | None:intergenic | 10.0% |
| !! | TCTATTATTTATTAGTAATA+TGG | - | chr5_2:3042991-3043010 | None:intergenic | 10.0% |
| !!! | CATTGAATAATTTTTTATTT+TGG | - | chr5_2:3045405-3045424 | None:intergenic | 10.0% |
| !!! | AATTGTAATTTTATAAAATC+AGG | - | chr5_2:3046394-3046413 | None:intergenic | 10.0% |
| !!! | TTTTATATTGATACTTAAAG+TGG | - | chr5_2:3039016-3039035 | None:intergenic | 15.0% |
| !! | TAAATAATGATCATACTTAA+AGG | - | chr5_2:3039176-3039195 | None:intergenic | 15.0% |
| !! | TTAAGTATGATCATTATTTA+TGG | + | chr5_2:3039176-3039195 | Msa0749510:intron | 15.0% |
| !! | AAAGAAAGAAAATACAAAAT+AGG | + | chr5_2:3039442-3039461 | Msa0749510:intron | 15.0% |
| !! | TTCTAATATGTAAATAAGAA+GGG | - | chr5_2:3039926-3039945 | None:intergenic | 15.0% |
| !! | TTTCTAATATGTAAATAAGA+AGG | - | chr5_2:3039927-3039946 | None:intergenic | 15.0% |
| !!! | TTTTAATTTCTAATAGTCTT+TGG | + | chr5_2:3040037-3040056 | Msa0749510:intron | 15.0% |
| !! | TTTAAACCCTATTATAAAAT+AGG | + | chr5_2:3040199-3040218 | Msa0749510:intron | 15.0% |
| !!! | TTGTTTCCTATTTTATAATA+GGG | - | chr5_2:3040208-3040227 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTTCTTAAATGG+TGG | + | chr5_2:3040373-3040392 | Msa0749510:intron | 15.0% |
| !! | TAGTGCATATTTAATTATTA+GGG | + | chr5_2:3040452-3040471 | Msa0749510:intron | 15.0% |
| !!! | AAAAAATTTGTTTTCAAAAC+AGG | + | chr5_2:3040675-3040694 | Msa0749510:intron | 15.0% |
| !!! | AAAAATTTGTTTTCAAAACA+GGG | + | chr5_2:3040676-3040695 | Msa0749510:intron | 15.0% |
| !! | AATTTCAAAACATAAATCAT+AGG | - | chr5_2:3041534-3041553 | None:intergenic | 15.0% |
| !! | ACATATCTAAATCTAATATA+TGG | + | chr5_2:3041593-3041612 | Msa0749510:intron | 15.0% |
| !!! | AAACTTTTAAGTATTAAAGT+AGG | - | chr5_2:3042625-3042644 | None:intergenic | 15.0% |
| !! | AATTATGTATTAGAAATACT+TGG | - | chr5_2:3044283-3044302 | None:intergenic | 15.0% |
| !! | AATTAATAAACTAATTCCAA+CGG | + | chr5_2:3044396-3044415 | Msa0749510:intron | 15.0% |
| !! | CATTATTTATGGTGAAAAAA+TGG | + | chr5_2:3039187-3039206 | Msa0749510:intron | 20.0% |
| !! | ATACACTATCAGAATTAATA+GGG | - | chr5_2:3039220-3039239 | None:intergenic | 20.0% |
| !!! | TGTATATTTTAACATAAGAG+GGG | - | chr5_2:3040543-3040562 | None:intergenic | 20.0% |
| !!! | GTGTATATTTTAACATAAGA+GGG | - | chr5_2:3040542-3040561 | None:intergenic | 20.0% |
| !!! | AGTGTATATTTTAACATAAG+AGG | - | chr5_2:3039724-3039743 | None:intergenic | 20.0% |
| !!! | TAATATGTTTTGAATAAGAC+TGG | - | chr5_2:3039752-3039771 | None:intergenic | 20.0% |
| !!! | GTGTATATTTTAACATAAGA+GGG | - | chr5_2:3040542-3040561 | None:intergenic | 20.0% |
| !!! | AGTGTATATTTTAACATAAG+AGG | - | chr5_2:3039724-3039743 | None:intergenic | 20.0% |
| !!! | GTTGTTTCCTATTTTATAAT+AGG | - | chr5_2:3040209-3040228 | None:intergenic | 20.0% |
| !! | TTACTAAAGACAATAAAGTA+TGG | + | chr5_2:3040257-3040276 | Msa0749510:intron | 20.0% |
| !! | GTAGTGCATATTTAATTATT+AGG | + | chr5_2:3040451-3040470 | Msa0749510:intron | 20.0% |
| !! | AGTGCATATTTAATTATTAG+GGG | + | chr5_2:3040453-3040472 | Msa0749510:intron | 20.0% |
| !!! | TAAATTTTACTTTTCAAAGG+AGG | + | chr5_2:3040516-3040535 | Msa0749510:intron | 20.0% |
| !!! | AAATTTTACTTTTCAAAGGA+GGG | + | chr5_2:3040517-3040536 | Msa0749510:intron | 20.0% |
| !!! | GTGTATATTTTAACATAAGA+GGG | + | chr5_2:3040542-3040561 | Msa0749510:intron | 20.0% |
| !!! | TGTATATTTTAACATAAGAG+GGG | + | chr5_2:3040543-3040562 | Msa0749510:intron | 20.0% |
| !!! | CTTACCCTTATTTTTATAAA+TGG | + | chr5_2:3040604-3040623 | Msa0749510:intron | 20.0% |
| !! | AACATAATTGTAATACGATA+TGG | - | chr5_2:3041000-3041019 | None:intergenic | 20.0% |
| !!! | TTGTTTCAATTTTTCGAAAA+GGG | - | chr5_2:3041066-3041085 | None:intergenic | 20.0% |
| !!! | ATTGTTTCAATTTTTCGAAA+AGG | - | chr5_2:3041067-3041086 | None:intergenic | 20.0% |
| !!! | TTTCAACTTTTAACAATGTT+TGG | + | chr5_2:3042127-3042146 | Msa0749510:intron | 20.0% |
| !!! | TTTTAACAATGTTTGGATTT+CGG | + | chr5_2:3042134-3042153 | Msa0749510:intron | 20.0% |
| !!! | ATTCTAAAATTGATTGATTC+AGG | - | chr5_2:3042266-3042285 | None:intergenic | 20.0% |
| !!! | AATGTTAATTTGTGTTTCTA+TGG | - | chr5_2:3042425-3042444 | None:intergenic | 20.0% |
| !! | ACACAAATTAACATTTCTAT+AGG | + | chr5_2:3042430-3042449 | Msa0749510:intron | 20.0% |
| !!! | TCAGTATACTACTTTTATAA+TGG | + | chr5_2:3042524-3042543 | Msa0749510:intron | 20.0% |
| !!! | AGTTAGTTCTAAAATTGTTT+TGG | + | chr5_2:3042891-3042910 | Msa0749510:intron | 20.0% |
| !! | TAAACATAAACAATTTCGAA+CGG | - | chr5_2:3043243-3043262 | None:intergenic | 20.0% |
| !! | TAAACATAAACAATTTCGAA+CGG | - | chr5_2:3043243-3043262 | None:intergenic | 20.0% |
| !! | GCCTAATTAAAAATATAGTA+AGG | + | chr5_2:3043860-3043879 | Msa0749510:intron | 20.0% |
| !!! | GCCTTACTATATTTTTAATT+AGG | - | chr5_2:3043864-3043883 | None:intergenic | 20.0% |
| !! | TTAAAAATATAGTAAGGCAA+TGG | + | chr5_2:3043866-3043885 | Msa0749510:intron | 20.0% |
| !! | TAAAAATATAGTAAGGCAAT+GGG | + | chr5_2:3043867-3043886 | Msa0749510:intron | 20.0% |
| !! | AACATATGAAGATGTATAAT+AGG | - | chr5_2:3044344-3044363 | None:intergenic | 20.0% |
| !! | TTATAGTGAAACTTAAGTAA+TGG | - | chr5_2:3044569-3044588 | None:intergenic | 20.0% |
| !! | TATGAACATATGTGTATAAT+AGG | - | chr5_2:3045120-3045139 | None:intergenic | 20.0% |
| !! | TTGAAAATAACATGGAAAAT+GGG | - | chr5_2:3045174-3045193 | None:intergenic | 20.0% |
| !! | ATAAACTGTTGAAAATAACA+TGG | - | chr5_2:3045182-3045201 | None:intergenic | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5_2:3045783-3045802 | None:intergenic | 20.0% |
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5_2:3045784-3045803 | None:intergenic | 20.0% |
| !!! | TTTTATCGAAAACTTCTTAT+TGG | - | chr5_2:3046363-3046382 | None:intergenic | 20.0% |
| !! | AAGTAACAAAAATGAGATAA+CGG | - | chr5_2:3046446-3046465 | None:intergenic | 20.0% |
| ! | GATACACTATCAGAATTAAT+AGG | - | chr5_2:3039221-3039240 | None:intergenic | 25.0% |
| ! | TGCAAGAAGAAAAATTGAAA+TGG | + | chr5_2:3039357-3039376 | Msa0749510:intron | 25.0% |
| ! | TGTAATTCAAGCATGTTTAA+GGG | - | chr5_2:3039866-3039885 | None:intergenic | 25.0% |
| !!! | TATTTTAACATAAGAGGGAA+GGG | - | chr5_2:3039892-3039911 | None:intergenic | 25.0% |
| !!! | ATATTTTAACATAAGAGGGA+AGG | - | chr5_2:3039893-3039912 | None:intergenic | 25.0% |
| ! | AATATGTAAATAAGAAGGGA+GGG | - | chr5_2:3039922-3039941 | None:intergenic | 25.0% |
| ! | TAATATGTAAATAAGAAGGG+AGG | - | chr5_2:3039923-3039942 | None:intergenic | 25.0% |
| !!! | TGTAGATTTTAACATAAGAG+AGG | - | chr5_2:3039996-3040015 | None:intergenic | 25.0% |
| ! | TTGTAATTCAAGCATCTTAT+AGG | + | chr5_2:3040482-3040501 | Msa0749510:intron | 25.0% |
| ! | TGTAATTCAAGCATCTTATA+GGG | + | chr5_2:3040483-3040502 | Msa0749510:intron | 25.0% |
| !!! | AATTTTACTTTTCAAAGGAG+GGG | + | chr5_2:3040518-3040537 | Msa0749510:intron | 25.0% |
| !!! | GGTGTATATTTTAACATAAG+AGG | + | chr5_2:3040541-3040560 | Msa0749510:intron | 25.0% |
| ! | TATCCTTACTCGTAAAAAAT+AGG | + | chr5_2:3040630-3040649 | Msa0749510:intron | 25.0% |
| ! | ATCCTTACTCGTAAAAAATA+GGG | + | chr5_2:3040631-3040650 | Msa0749510:intron | 25.0% |
| !! | TTTTTGTCTTCTTCAGATTT+TGG | + | chr5_2:3040719-3040738 | Msa0749510:intron | 25.0% |
| !!! | TCAATTTTAAGAAGATCACA+CGG | + | chr5_2:3040789-3040808 | Msa0749510:intron | 25.0% |
| !! | AACTTCTTGTTGTAGTATTT+GGG | - | chr5_2:3040828-3040847 | None:intergenic | 25.0% |
| !! | AAACTTCTTGTTGTAGTATT+TGG | - | chr5_2:3040829-3040848 | None:intergenic | 25.0% |
| ! | CATTAAGAAAATGTATTGCT+TGG | - | chr5_2:3041283-3041302 | None:intergenic | 25.0% |
| ! | CGATTAGAATACTATAACTA+CGG | - | chr5_2:3041343-3041362 | None:intergenic | 25.0% |
| ! | ATTTAGATATGTGATAGCAT+CGG | - | chr5_2:3041585-3041604 | None:intergenic | 25.0% |
| ! | TATGAATAAGATTGCACAAA+AGG | + | chr5_2:3041853-3041872 | Msa0749510:intron | 25.0% |
| !!! | AGCAACAAACTTTTTAAAGT+CGG | + | chr5_2:3041949-3041968 | Msa0749510:intron | 25.0% |
| ! | TGAAAATAAAAGCAAAAGCA+TGG | - | chr5_2:3042112-3042131 | None:intergenic | 25.0% |
| ! | TATATGTCCTTTAAACAGAT+AGG | + | chr5_2:3042160-3042179 | Msa0749510:intron | 25.0% |
| ! | CAACATAAAACTAGAAACTT+GGG | - | chr5_2:3042188-3042207 | None:intergenic | 25.0% |
| ! | ACAACATAAAACTAGAAACT+TGG | - | chr5_2:3042189-3042208 | None:intergenic | 25.0% |
| !! | TTTAGAATTGTAGTTTGCAA+TGG | + | chr5_2:3042278-3042297 | Msa0749510:intron | 25.0% |
| !!! | TCATTTCAGTTTTGAATGAA+CGG | - | chr5_2:3042353-3042372 | None:intergenic | 25.0% |
| !! | AGGATTTTCTCAATTTCTTT+AGG | + | chr5_2:3042380-3042399 | Msa0749510:intron | 25.0% |
| !! | AGACAGATTTTGTATGATAA+GGG | - | chr5_2:3042687-3042706 | None:intergenic | 25.0% |
| ! | ATAAATTATAGACCTAGAGT+TGG | + | chr5_2:3043013-3043032 | Msa0749510:intron | 25.0% |
| !!! | TTTTGAGTATTTTATGGAGT+TGG | + | chr5_2:3043453-3043472 | Msa0749510:intron | 25.0% |
| ! | TTGAGCAGAATCTTTAATAT+TGG | + | chr5_2:3043656-3043675 | Msa0749510:intron | 25.0% |
| ! | CTTTCAATGTATATGACATT+GGG | + | chr5_2:3043746-3043765 | Msa0749510:intron | 25.0% |
| ! | AATACACAACAAAAGATTAG+CGG | - | chr5_2:3044200-3044219 | None:intergenic | 25.0% |
| ! | TTAATAATTATAGCAACCGT+TGG | - | chr5_2:3044415-3044434 | None:intergenic | 25.0% |
| !! | ATTTCATTTCAGAGTTGTTT+TGG | + | chr5_2:3044798-3044817 | Msa0749510:intron | 25.0% |
| ! | GTTGAAAATAACATGGAAAA+TGG | - | chr5_2:3045175-3045194 | None:intergenic | 25.0% |
| ! | GATAATGAACTTATTTAGTG+AGG | - | chr5_2:3046150-3046169 | None:intergenic | 25.0% |
| ! | ATTTACAAAATGTGTGAATG+GGG | - | chr5_2:3046277-3046296 | None:intergenic | 25.0% |
| ! | CATTTACAAAATGTGTGAAT+GGG | - | chr5_2:3046278-3046297 | None:intergenic | 25.0% |
| !!! | TTAAGTTTTGTAGTCATAAG+AGG | + | chr5_2:3046413-3046432 | Msa0749510:three_prime_UTR | 25.0% |
| TTGATACTTAAAGTGGAAAG+TGG | - | chr5_2:3039009-3039028 | None:intergenic | 30.0% | |
| !! | TATGAGTGATTTGTTTCTCA+TGG | - | chr5_2:3039074-3039093 | None:intergenic | 30.0% |
| TGAGAAACAAATCACTCATA+TGG | + | chr5_2:3039074-3039093 | Msa0749510:intron | 30.0% | |
| ! | GAAAAAGAATAAGTTGAGTG+AGG | + | chr5_2:3039328-3039347 | Msa0749510:intron | 30.0% |
| ! | ATTTTTGATAGGTCTCAAGT+TGG | - | chr5_2:3039480-3039499 | None:intergenic | 30.0% |
| CTCACTTGAGACATATAATA+AGG | + | chr5_2:3039529-3039548 | Msa0749510:intron | 30.0% | |
| ! | TGTAATTGAAGCATCTTTGA+GGG | - | chr5_2:3039692-3039711 | None:intergenic | 30.0% |
| !!! | ATATTTTAACATAAGAGGGG+AGG | - | chr5_2:3040546-3040565 | None:intergenic | 30.0% |
| !! | ATGTTTTGAATAAGACTGGA+GGG | - | chr5_2:3039748-3039767 | None:intergenic | 30.0% |
| !! | TATGTTTTGAATAAGACTGG+AGG | - | chr5_2:3039749-3039768 | None:intergenic | 30.0% |
| !! | TGTAATTCTAGCTTCTCTTA+GGG | - | chr5_2:3039795-3039814 | None:intergenic | 30.0% |
| !! | ATGTAATTCTAGCTTCTCTT+AGG | - | chr5_2:3039796-3039815 | None:intergenic | 30.0% |
| !! | TCTAGATTTTAACCTAAGAG+GGG | - | chr5_2:3039825-3039844 | None:intergenic | 30.0% |
| !! | CTCTAGATTTTAACCTAAGA+GGG | - | chr5_2:3039826-3039845 | None:intergenic | 30.0% |
| !! | ACTCTAGATTTTAACCTAAG+AGG | - | chr5_2:3039827-3039846 | None:intergenic | 30.0% |
| GTAATTCAAGCATGTTTAAG+GGG | - | chr5_2:3039865-3039884 | None:intergenic | 30.0% | |
| GTGTAATTCAAGCATGTTTA+AGG | - | chr5_2:3039867-3039886 | None:intergenic | 30.0% | |
| !! | ATTTTAACATAAGAGGGAAG+GGG | - | chr5_2:3039891-3039910 | None:intergenic | 30.0% |
| ATATGTAAATAAGAAGGGAG+GGG | - | chr5_2:3039921-3039940 | None:intergenic | 30.0% | |
| !! | ATTTTAACATAAGAGAGGAG+GGG | - | chr5_2:3039991-3040010 | None:intergenic | 30.0% |
| !! | GATTTTAACATAAGAGAGGA+GGG | - | chr5_2:3039992-3040011 | None:intergenic | 30.0% |
| !! | AGATTTTAACATAAGAGAGG+AGG | - | chr5_2:3039993-3040012 | None:intergenic | 30.0% |
| CTTCGAAAAAATAGTATTGC+TGG | + | chr5_2:3040102-3040121 | Msa0749510:intron | 30.0% | |
| GCATATTTAATTATTAGGGG+AGG | + | chr5_2:3040456-3040475 | Msa0749510:intron | 30.0% | |
| TATTTAATTATTAGGGGAGG+AGG | + | chr5_2:3040459-3040478 | Msa0749510:intron | 30.0% | |
| GTAATTCAAGCATCTTATAG+GGG | + | chr5_2:3040484-3040503 | Msa0749510:intron | 30.0% | |
| !! | ATTTTACTTTTCAAAGGAGG+GGG | + | chr5_2:3040519-3040538 | Msa0749510:intron | 30.0% |
| AGTGTAATTCAAGCATCTTT+GGG | + | chr5_2:3040571-3040590 | Msa0749510:intron | 30.0% | |
| !!! | TACCCTATTTTTTACGAGTA+AGG | - | chr5_2:3040636-3040655 | None:intergenic | 30.0% |
| CGTAAAAAATAGGGTAGATT+TGG | + | chr5_2:3040640-3040659 | Msa0749510:intron | 30.0% | |
| CAATCATCCCAATTCAATAA+TGG | + | chr5_2:3041083-3041102 | Msa0749510:intron | 30.0% | |
| AACACGACCATTATTGAATT+GGG | - | chr5_2:3041093-3041112 | None:intergenic | 30.0% | |
| TAGTCCAAGTATGAATGTTT+GGG | - | chr5_2:3041118-3041137 | None:intergenic | 30.0% | |
| ATAGTCCAAGTATGAATGTT+TGG | - | chr5_2:3041119-3041138 | None:intergenic | 30.0% | |
| TTCCATAAAATCATTGACAC+TGG | + | chr5_2:3041191-3041210 | Msa0749510:intron | 30.0% | |
| ! | ACTTTGAACGATCTTTTAGA+TGG | + | chr5_2:3041233-3041252 | Msa0749510:intron | 30.0% |
| CAAAACATAAATCATAGGCT+TGG | - | chr5_2:3041529-3041548 | None:intergenic | 30.0% | |
| TTTAGATATGTGATAGCATC+GGG | - | chr5_2:3041584-3041603 | None:intergenic | 30.0% | |
| !!! | TTGTAGTTTTAGTTGGATAG+AGG | - | chr5_2:3041688-3041707 | None:intergenic | 30.0% |
| GTTATCGGTAGATTATACAA+AGG | + | chr5_2:3041812-3041831 | Msa0749510:intron | 30.0% | |
| !!! | TTTTTAAAGTCGGCTTGTTT+GGG | + | chr5_2:3041959-3041978 | Msa0749510:intron | 30.0% |
| CGTTGTGTAAGATAGATATA+TGG | + | chr5_2:3042019-3042038 | Msa0749510:intron | 30.0% | |
| TAGATATATGGAGATAAGCT+AGG | + | chr5_2:3042031-3042050 | Msa0749510:intron | 30.0% | |
| ! | GATATGTTTCTCCTCTATTT+TGG | + | chr5_2:3042305-3042324 | Msa0749510:intron | 30.0% |
| AATATCTCTCACCAAAATAG+AGG | - | chr5_2:3042319-3042338 | None:intergenic | 30.0% | |
| AAAACTGAAATGAGATGTTC+AGG | + | chr5_2:3042360-3042379 | Msa0749510:intron | 30.0% | |
| CAATTATGCATTACAACTAG+GGG | - | chr5_2:3042484-3042503 | None:intergenic | 30.0% | |
| GCAATTATGCATTACAACTA+GGG | - | chr5_2:3042485-3042504 | None:intergenic | 30.0% | |
| TGCAATTATGCATTACAACT+AGG | - | chr5_2:3042486-3042505 | None:intergenic | 30.0% | |
| ATACAAGCAACTTGTAAACA+TGG | - | chr5_2:3042583-3042602 | None:intergenic | 30.0% | |
| AAGTAGGAAATAGAGAATTG+AGG | - | chr5_2:3042609-3042628 | None:intergenic | 30.0% | |
| ! | ATGTTTAAGATACAGCTTAC+AGG | + | chr5_2:3042647-3042666 | Msa0749510:intron | 30.0% |
| ! | TGTTTAAGATACAGCTTACA+GGG | + | chr5_2:3042648-3042667 | Msa0749510:intron | 30.0% |
| ! | GAGACAGATTTTGTATGATA+AGG | - | chr5_2:3042688-3042707 | None:intergenic | 30.0% |
| ! | TATTGTCTTATTCTCTTCCA+AGG | - | chr5_2:3042870-3042889 | None:intergenic | 30.0% |
| !!! | GGTTTTTTATAACCAAGACA+GGG | - | chr5_2:3043048-3043067 | None:intergenic | 30.0% |
| !!! | TGGTTTTTTATAACCAAGAC+AGG | - | chr5_2:3043049-3043068 | None:intergenic | 30.0% |
| AGTATTTCAGAATTCTGATC+AGG | - | chr5_2:3043166-3043185 | None:intergenic | 30.0% | |
| ATTCTACTCAGGATTAAGAT+AGG | - | chr5_2:3043203-3043222 | None:intergenic | 30.0% | |
| !!! | CTTGGGTTTTGAGTATTTTA+TGG | + | chr5_2:3043321-3043340 | Msa0749510:intron | 30.0% |
| !!! | CTTGGGTTTTGAGTATTTTA+TGG | + | chr5_2:3043321-3043340 | Msa0749510:intron | 30.0% |
| ! | TGAGTAGAATCCTTCAATTT+TGG | + | chr5_2:3043595-3043614 | Msa0749510:intron | 30.0% |
| AAAATCGCAACCAAAATTGA+AGG | - | chr5_2:3043608-3043627 | None:intergenic | 30.0% | |
| ! | TGATTTTGTAGAATCGATAG+AGG | - | chr5_2:3043635-3043654 | None:intergenic | 30.0% |
| ! | ATTTTGCTTCAAATCGAAGA+GGG | - | chr5_2:3043694-3043713 | None:intergenic | 30.0% |
| ! | AATTTTGCTTCAAATCGAAG+AGG | - | chr5_2:3043695-3043714 | None:intergenic | 30.0% |
| CCAATGTCATATACATTGAA+AGG | - | chr5_2:3043748-3043767 | None:intergenic | 30.0% | |
| CCTTTCAATGTATATGACAT+TGG | + | chr5_2:3043745-3043764 | Msa0749510:intron | 30.0% | |
| GAGTCTGCTATATAATTTCA+TGG | - | chr5_2:3044092-3044111 | None:intergenic | 30.0% | |
| CAACTTGAAATAAAATCAGG+TGG | - | chr5_2:3044231-3044250 | None:intergenic | 30.0% | |
| CAGCAACTTGAAATAAAATC+AGG | - | chr5_2:3044234-3044253 | None:intergenic | 30.0% | |
| ATACTTGGATGAATCTTTGA+TGG | - | chr5_2:3044268-3044287 | None:intergenic | 30.0% | |
| GTCTTCTATACGAAAGATAT+TGG | - | chr5_2:3044452-3044471 | None:intergenic | 30.0% | |
| TAGTGAAACTTAAGTAATGG+CGG | - | chr5_2:3044566-3044585 | None:intergenic | 30.0% | |
| ATCACGTAATCAAGTGAAAA+TGG | + | chr5_2:3044632-3044651 | Msa0749510:exon | 30.0% | |
| ! | ATTTTGTAAGGAGTAAGAAG+AGG | - | chr5_2:3044684-3044703 | None:intergenic | 30.0% |
| CTTCTTACTCCTTACAAAAT+TGG | + | chr5_2:3044684-3044703 | Msa0749510:CDS | 30.0% | |
| ! | TCGAATTTGCCAATTTTGTA+AGG | - | chr5_2:3044696-3044715 | None:intergenic | 30.0% |
| GACTTATCTGTAGATGATAT+TGG | - | chr5_2:3045223-3045242 | None:intergenic | 30.0% | |
| AAACCATTACTTCGAATTTG+TGG | - | chr5_2:3045253-3045272 | None:intergenic | 30.0% | |
| !! | AGATCTTTTTGTTGCTTCAA+AGG | + | chr5_2:3045452-3045471 | Msa0749510:intron | 30.0% |
| !! | GATCTTTTTGTTGCTTCAAA+GGG | + | chr5_2:3045453-3045472 | Msa0749510:intron | 30.0% |
| ATTATGCAACATACTAACTG+TGG | + | chr5_2:3045493-3045512 | Msa0749510:intron | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5_2:3045568-3045587 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+TGG | + | chr5_2:3045596-3045615 | Msa0749510:CDS | 30.0% | |
| TATAAAGTCCCAATTCGTTA+GGG | - | chr5_2:3045751-3045770 | None:intergenic | 30.0% | |
| ATATAAAGTCCCAATTCGTT+AGG | - | chr5_2:3045752-3045771 | None:intergenic | 30.0% | |
| TAACGAATTGGGACTTTATA+TGG | + | chr5_2:3045751-3045770 | Msa0749510:CDS | 30.0% | |
| TGGTATTCTTTACTGTCATA+TGG | + | chr5_2:3045793-3045812 | Msa0749510:CDS | 30.0% | |
| TATTCTTTACTGTCATATGG+TGG | + | chr5_2:3045796-3045815 | Msa0749510:CDS | 30.0% | |
| AGTTTCTTCATTCAAGAAAG+GGG | - | chr5_2:3046099-3046118 | None:intergenic | 30.0% | |
| CAGTTTCTTCATTCAAGAAA+GGG | - | chr5_2:3046100-3046119 | None:intergenic | 30.0% | |
| ! | GTCACTGAAATAAGATTTTG+AGG | + | chr5_2:3046200-3046219 | Msa0749510:three_prime_UTR | 30.0% |
| CCATTTACAAAATGTGTGAA+TGG | - | chr5_2:3046279-3046298 | None:intergenic | 30.0% | |
| ! | CCATTCACACATTTTGTAAA+TGG | + | chr5_2:3046276-3046295 | Msa0749510:three_prime_UTR | 30.0% |
| ! | ACACATTTTGTAAATGGTCA+GGG | + | chr5_2:3046282-3046301 | Msa0749510:three_prime_UTR | 30.0% |
| ATACTTAAAGTGGAAAGTGG+CGG | - | chr5_2:3039006-3039025 | None:intergenic | 35.0% | |
| GACGACTACAAGATAAATTC+AGG | - | chr5_2:3039142-3039161 | None:intergenic | 35.0% | |
| TAATTGAACCGTTCAAATCG+TGG | - | chr5_2:3039259-3039278 | None:intergenic | 35.0% | |
| TGTGAGAGATTGAGAAATGA+GGG | + | chr5_2:3039380-3039399 | Msa0749510:intron | 35.0% | |
| !!! | CAGATTTTTTGTATGTCGCA+AGG | + | chr5_2:3039564-3039583 | Msa0749510:intron | 35.0% |
| ATCTCAACTCCTTCTCAAAT+TGG | - | chr5_2:3039622-3039641 | None:intergenic | 35.0% | |
| ! | GTAATTGAAGCATCTTTGAG+GGG | - | chr5_2:3039691-3039710 | None:intergenic | 35.0% |
| ! | GTGTAATTGAAGCATCTTTG+AGG | - | chr5_2:3039693-3039712 | None:intergenic | 35.0% |
| !! | TGTTTTGAATAAGACTGGAG+GGG | - | chr5_2:3039747-3039766 | None:intergenic | 35.0% |
| !! | GTAATTCTAGCTTCTCTTAG+GGG | - | chr5_2:3039794-3039813 | None:intergenic | 35.0% |
| TGTGATTCAAGCTTCTCTTA+GGG | - | chr5_2:3039966-3039985 | None:intergenic | 35.0% | |
| ATGTGATTCAAGCTTCTCTT+AGG | - | chr5_2:3039967-3039986 | None:intergenic | 35.0% | |
| ! | TTTTAACATAAGAGAGGAGG+GGG | - | chr5_2:3039990-3040009 | None:intergenic | 35.0% |
| !! | TTTTACTTTTCAAAGGAGGG+GGG | + | chr5_2:3040520-3040539 | Msa0749510:intron | 35.0% |
| !! | ATTTTAACATAAGAGGGGAG+AGG | + | chr5_2:3040548-3040567 | Msa0749510:intron | 35.0% |
| GAGTGTAATTCAAGCATCTT+TGG | + | chr5_2:3040570-3040589 | Msa0749510:intron | 35.0% | |
| GGTAGATTTGGAAGAAACTA+GGG | + | chr5_2:3040652-3040671 | Msa0749510:intron | 35.0% | |
| GTAGTATTTGGGAATAACAG+CGG | - | chr5_2:3040817-3040836 | None:intergenic | 35.0% | |
| ATGAGGTTGAAACAAAACGA+CGG | - | chr5_2:3040863-3040882 | None:intergenic | 35.0% | |
| CAACACGACCATTATTGAAT+TGG | - | chr5_2:3041094-3041113 | None:intergenic | 35.0% | |
| TTGTCCCAAACATTCATACT+TGG | + | chr5_2:3041111-3041130 | Msa0749510:intron | 35.0% | |
| ! | GACCAGTGTCAATGATTTTA+TGG | - | chr5_2:3041196-3041215 | None:intergenic | 35.0% |
| TCGTTCAAAGTTTGAGTAGT+AGG | - | chr5_2:3041224-3041243 | None:intergenic | 35.0% | |
| ! | AATGTATTGCTTGGTGAATC+TGG | - | chr5_2:3041274-3041293 | None:intergenic | 35.0% |
| ATCGATGAATCATGTGATAC+TGG | + | chr5_2:3041359-3041378 | Msa0749510:intron | 35.0% | |
| GTGCTTGTTTAAATTGACTG+AGG | - | chr5_2:3041628-3041647 | None:intergenic | 35.0% | |
| !! | ACTTGCCTTGTTTAGAGAAA+TGG | + | chr5_2:3041646-3041665 | Msa0749510:intron | 35.0% |
| TGTCTCCATTTCTCTAAACA+AGG | - | chr5_2:3041654-3041673 | None:intergenic | 35.0% | |
| !!! | TAGTTTTAGTTGGATAGAGG+AGG | - | chr5_2:3041685-3041704 | None:intergenic | 35.0% |
| TGTTCGGTAACTAAATTGGT+CGG | - | chr5_2:3041713-3041732 | None:intergenic | 35.0% | |
| CTCTTGTTCGGTAACTAAAT+TGG | - | chr5_2:3041717-3041736 | None:intergenic | 35.0% | |
| CAATTTAGTTACCGAACAAG+AGG | + | chr5_2:3041715-3041734 | Msa0749510:intron | 35.0% | |
| GCTAGTTATCACTCTGTTAT+CGG | + | chr5_2:3041797-3041816 | Msa0749510:intron | 35.0% | |
| GAATAAGATTGCACAAAAGG+TGG | + | chr5_2:3041856-3041875 | Msa0749510:intron | 35.0% | |
| !!! | CTTTTTAAAGTCGGCTTGTT+TGG | + | chr5_2:3041958-3041977 | Msa0749510:intron | 35.0% |
| !!! | TTTTAAAGTCGGCTTGTTTG+GGG | + | chr5_2:3041960-3041979 | Msa0749510:intron | 35.0% |
| TATATGGAGATAAGCTAGGA+TGG | + | chr5_2:3042035-3042054 | Msa0749510:intron | 35.0% | |
| TTGGGTACCTATCTGTTTAA+AGG | - | chr5_2:3042170-3042189 | None:intergenic | 35.0% | |
| AAATATGCCTATCCTTGTGT+TGG | + | chr5_2:3042219-3042238 | Msa0749510:intron | 35.0% | |
| ACATTTCTATAGGCTCCTAA+CGG | + | chr5_2:3042440-3042459 | Msa0749510:intron | 35.0% | |
| TTACAACTAGGGGTAGAAAA+AGG | - | chr5_2:3042474-3042493 | None:intergenic | 35.0% | |
| GCTTTGCACATAACTGTTAT+AGG | + | chr5_2:3042830-3042849 | Msa0749510:intron | 35.0% | |
| TTGCACATAACTGTTATAGG+TGG | + | chr5_2:3042833-3042852 | Msa0749510:intron | 35.0% | |
| AGGTGGATATGAAATTTCCT+TGG | + | chr5_2:3042850-3042869 | Msa0749510:intron | 35.0% | |
| CATAGTTTACGATTCTACTC+AGG | - | chr5_2:3043214-3043233 | None:intergenic | 35.0% | |
| CTCTTAAGTTATGCACTTTG+TGG | + | chr5_2:3043556-3043575 | Msa0749510:intron | 35.0% | |
| ! | TTTTGCTTCAAATCGAAGAG+GGG | - | chr5_2:3043693-3043712 | None:intergenic | 35.0% |
| TCAATGTATATGACATTGGG+AGG | + | chr5_2:3043749-3043768 | Msa0749510:intron | 35.0% | |
| CAATGTATATGACATTGGGA+GGG | + | chr5_2:3043750-3043769 | Msa0749510:intron | 35.0% | |
| ATGAAGCTTCTGAATTGTTG+AGG | - | chr5_2:3043777-3043796 | None:intergenic | 35.0% | |
| ! | GGTAATGCAATGTTGTTTGA+AGG | + | chr5_2:3043807-3043826 | Msa0749510:intron | 35.0% |
| !!! | AGGCAATGGGATTTTAGTTT+AGG | + | chr5_2:3043880-3043899 | Msa0749510:intron | 35.0% |
| !! | TATTTCAAGTTGCTGTTGAG+AGG | + | chr5_2:3044239-3044258 | Msa0749510:intron | 35.0% |
| TGTGACCACATTAGTCAAAT+CGG | + | chr5_2:3044474-3044493 | Msa0749510:intron | 35.0% | |
| GCAAATTCGATCTATCTCAT+AGG | + | chr5_2:3044706-3044725 | Msa0749510:CDS | 35.0% | |
| GAATAATAGAGGATAGCATG+AGG | - | chr5_2:3044865-3044884 | None:intergenic | 35.0% | |
| ! | CTACCTTCTTTTGTCAGATT+TGG | + | chr5_2:3045040-3045059 | Msa0749510:CDS | 35.0% |
| ATGCCAAATCTGACAAAAGA+AGG | - | chr5_2:3045046-3045065 | None:intergenic | 35.0% | |
| ! | TTTTGTCAGATTTGGCATGT+TGG | + | chr5_2:3045048-3045067 | Msa0749510:CDS | 35.0% |
| ACACCACAAATTCGAAGTAA+TGG | + | chr5_2:3045247-3045266 | Msa0749510:CDS | 35.0% | |
| TGCAAATTGCAGGATTTGAT+GGG | + | chr5_2:3045516-3045535 | Msa0749510:intron | 35.0% | |
| CATTCTGCATATTCTGCAAA+AGG | - | chr5_2:3045716-3045735 | None:intergenic | 35.0% | |
| TTTGCAGAATATGCAGAATG+TGG | + | chr5_2:3045716-3045735 | Msa0749510:CDS | 35.0% | |
| GTCAATGCCCTCAATAAATA+TGG | + | chr5_2:3045773-3045792 | Msa0749510:CDS | 35.0% | |
| GAACCAAGAATGAAAACTGT+TGG | + | chr5_2:3045818-3045837 | Msa0749510:CDS | 35.0% | |
| ! | TCACCAACAGTTTTCATTCT+TGG | - | chr5_2:3045824-3045843 | None:intergenic | 35.0% |
| TCCTCTGAACAAGTATAACA+GGG | + | chr5_2:3046030-3046049 | Msa0749510:CDS | 35.0% | |
| TACATTTCTGATCCAGTTCT+AGG | + | chr5_2:3046061-3046080 | Msa0749510:CDS | 35.0% | |
| TAGTCAGTATAACCTAGAAC+TGG | - | chr5_2:3046076-3046095 | None:intergenic | 35.0% | |
| CCAGTTTCTTCATTCAAGAA+AGG | - | chr5_2:3046101-3046120 | None:intergenic | 35.0% | |
| CCTTTCTTGAATGAAGAAAC+TGG | + | chr5_2:3046098-3046117 | Msa0749510:exon | 35.0% | |
| TTAGTAAGAGTAAGCTTGAG+AGG | - | chr5_2:3046245-3046264 | None:intergenic | 35.0% | |
| GCTTACTCTTACTAACTCTT+TGG | + | chr5_2:3046250-3046269 | Msa0749510:three_prime_UTR | 35.0% | |
| ! | CACACATTTTGTAAATGGTC+AGG | + | chr5_2:3046281-3046300 | Msa0749510:three_prime_UTR | 35.0% |
| TCAACATTTCCCTTGTCACA+AGG | + | chr5_2:3039104-3039123 | Msa0749510:intron | 40.0% | |
| GTGTGAGAGATTGAGAAATG+AGG | + | chr5_2:3039379-3039398 | Msa0749510:intron | 40.0% | |
| !! | ATTTTAACCTAAGAGGGGAG+GGG | - | chr5_2:3039820-3039839 | None:intergenic | 40.0% |
| !! | GATTTTAACCTAAGAGGGGA+GGG | - | chr5_2:3039821-3039840 | None:intergenic | 40.0% |
| !! | AGATTTTAACCTAAGAGGGG+AGG | - | chr5_2:3039822-3039841 | None:intergenic | 40.0% |
| TTCAAGCATGTTTAAGGGGA+GGG | - | chr5_2:3039861-3039880 | None:intergenic | 40.0% | |
| ATTCAAGCATGTTTAAGGGG+AGG | - | chr5_2:3039862-3039881 | None:intergenic | 40.0% | |
| GTGATTCAAGCTTCTCTTAG+GGG | - | chr5_2:3039965-3039984 | None:intergenic | 40.0% | |
| ATTCAAGCATCTTATAGGGG+AGG | + | chr5_2:3040487-3040506 | Msa0749510:intron | 40.0% | |
| TTCAAGCATCTTATAGGGGA+GGG | + | chr5_2:3040488-3040507 | Msa0749510:intron | 40.0% | |
| GGGTAGATTTGGAAGAAACT+AGG | + | chr5_2:3040651-3040670 | Msa0749510:intron | 40.0% | |
| AGGGTTATGTTCAACTGATG+AGG | - | chr5_2:3040880-3040899 | None:intergenic | 40.0% | |
| AATAGTCACGAGGAAAAGAG+GGG | - | chr5_2:3040917-3040936 | None:intergenic | 40.0% | |
| CAATAGTCACGAGGAAAAGA+GGG | - | chr5_2:3040918-3040937 | None:intergenic | 40.0% | |
| ! | TCTTTTCCTCGTGACTATTG+CGG | + | chr5_2:3040918-3040937 | Msa0749510:intron | 40.0% |
| TAATTACCGCAATAGTCACG+AGG | - | chr5_2:3040927-3040946 | None:intergenic | 40.0% | |
| TTCAATATACTGCTCGATCG+AGG | + | chr5_2:3040966-3040985 | Msa0749510:intron | 40.0% | |
| TCTTTCTACCCTTGCTAGAA+TGG | + | chr5_2:3041019-3041038 | Msa0749510:intron | 40.0% | |
| CTTTCTACCCTTGCTAGAAT+GGG | + | chr5_2:3041020-3041039 | Msa0749510:intron | 40.0% | |
| AGAAGAACCCATTCTAGCAA+GGG | - | chr5_2:3041030-3041049 | None:intergenic | 40.0% | |
| CAACAACTGGATGGCTATTT+GGG | - | chr5_2:3041390-3041409 | None:intergenic | 40.0% | |
| TCAACAACTGGATGGCTATT+TGG | - | chr5_2:3041391-3041410 | None:intergenic | 40.0% | |
| GTAATGCATCTCTCAACAAC+TGG | - | chr5_2:3041403-3041422 | None:intergenic | 40.0% | |
| TTGAGAGATGCATTACAGAC+TGG | + | chr5_2:3041407-3041426 | Msa0749510:intron | 40.0% | |
| AGAAGATAACCATCTTCAGC+CGG | - | chr5_2:3041452-3041471 | None:intergenic | 40.0% | |
| GTTCGGTAACTAAATTGGTC+GGG | - | chr5_2:3041712-3041731 | None:intergenic | 40.0% | |
| AGCAGATTTGACCTCTTGTT+CGG | - | chr5_2:3041729-3041748 | None:intergenic | 40.0% | |
| GCAGCTGTCATGATAAAAGA+TGG | + | chr5_2:3041758-3041777 | Msa0749510:intron | 40.0% | |
| GAGTGATAACTAGCAGCATT+AGG | - | chr5_2:3041791-3041810 | None:intergenic | 40.0% | |
| TTGACGTTCTCCAAAGACAA+AGG | + | chr5_2:3041988-3042007 | Msa0749510:intron | 40.0% | |
| AAATGTCACAAGCCAACACA+AGG | - | chr5_2:3042234-3042253 | None:intergenic | 40.0% | |
| CATTTCTATAGGCTCCTAAC+GGG | + | chr5_2:3042441-3042460 | Msa0749510:intron | 40.0% | |
| GCAACTTGTAAACATGGACT+TGG | - | chr5_2:3042577-3042596 | None:intergenic | 40.0% | |
| ACAAAATCTGTCTCCAAGTC+TGG | + | chr5_2:3042694-3042713 | Msa0749510:intron | 40.0% | |
| CTAAGAAACTACTCCAGACT+TGG | - | chr5_2:3042710-3042729 | None:intergenic | 40.0% | |
| !!! | GTTTTGGTTCATCGCATTGA+AGG | + | chr5_2:3042907-3042926 | Msa0749510:intron | 40.0% |
| GCAAGTACAGTAGATACTGT+TGG | - | chr5_2:3043069-3043088 | None:intergenic | 40.0% | |
| CTGTACTTGCCTTCAATAAC+AGG | + | chr5_2:3043079-3043098 | Msa0749510:intron | 40.0% | |
| AGCTTCTCACCTGTTATTGA+AGG | - | chr5_2:3043091-3043110 | None:intergenic | 40.0% | |
| TCACGGACACATCAATTGTA+AGG | - | chr5_2:3043281-3043300 | None:intergenic | 40.0% | |
| TCACGGACACATCAATTGTA+AGG | - | chr5_2:3043281-3043300 | None:intergenic | 40.0% | |
| AGAAGCTTCATGTAGATCGA+TGG | + | chr5_2:3043786-3043805 | Msa0749510:intron | 40.0% | |
| TAAGGCAAAACGTTGTTGCT+TGG | - | chr5_2:3043968-3043987 | None:intergenic | 40.0% | |
| GCAGACTCCAAATTACAAAG+TGG | + | chr5_2:3044104-3044123 | Msa0749510:intron | 40.0% | |
| !! | CTTGGTGCCACTTTGTAATT+TGG | - | chr5_2:3044114-3044133 | None:intergenic | 40.0% |
| ATTAAAACCGCAAGCGTGTA+AGG | + | chr5_2:3044136-3044155 | Msa0749510:intron | 40.0% | |
| ACATTAGTCAAATCGGACTG+CGG | + | chr5_2:3044481-3044500 | Msa0749510:intron | 40.0% | |
| CGTAATCAAGTGAAAATGGC+TGG | + | chr5_2:3044636-3044655 | Msa0749510:exon | 40.0% | |
| GTAAGGAGTAAGAAGAGGAA+TGG | - | chr5_2:3044679-3044698 | None:intergenic | 40.0% | |
| TAGGATCTTTGTCTTGTGAG+TGG | - | chr5_2:3044826-3044845 | None:intergenic | 40.0% | |
| CTCACAAGACAAAGATCCTA+TGG | + | chr5_2:3044826-3044845 | Msa0749510:CDS | 40.0% | |
| TGGCTCTCTGTGAATAATAG+AGG | - | chr5_2:3044876-3044895 | None:intergenic | 40.0% | |
| TATTATTCACAGAGAGCCAC+CGG | + | chr5_2:3044877-3044896 | Msa0749510:CDS | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5_2:3044973-3044992 | None:intergenic | 40.0% | |
| GTTGGAAGAGTTTCTGATTC+TGG | + | chr5_2:3045066-3045085 | Msa0749510:CDS | 40.0% | |
| TCAACAGTTTATCAGCCGAA+TGG | + | chr5_2:3045190-3045209 | Msa0749510:intron | 40.0% | |
| TTGCAAAATTCACACCACCA+AGG | + | chr5_2:3045278-3045297 | Msa0749510:CDS | 40.0% | |
| ! | ACTTGCTGCTAGAAATGCTA+TGG | + | chr5_2:3045345-3045364 | Msa0749510:CDS | 40.0% |
| GTGCAAATTGCAGGATTTGA+TGG | + | chr5_2:3045515-3045534 | Msa0749510:intron | 40.0% | |
| GCAAATTGCAGGATTTGATG+GGG | + | chr5_2:3045517-3045536 | Msa0749510:intron | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5_2:3045530-3045549 | Msa0749510:CDS | 40.0% | |
| TTGATGGGGTTGAAATCCAT+GGG | + | chr5_2:3045531-3045550 | Msa0749510:CDS | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr5_2:3045599-3045618 | Msa0749510:CDS | 40.0% | |
| GAAGCTGTTGCAAATGAGAT+AGG | + | chr5_2:3045662-3045681 | Msa0749510:CDS | 40.0% | |
| GAGATAGGAGCTGATAAAGT+TGG | + | chr5_2:3045677-3045696 | Msa0749510:CDS | 40.0% | |
| !! | AACCATGAAAGTGCCTTTGA+AGG | - | chr5_2:3045888-3045907 | None:intergenic | 40.0% |
| TCAATGCCATAGCTGAAAAC+AGG | + | chr5_2:3045936-3045955 | Msa0749510:CDS | 40.0% | |
| CAATGCCATAGCTGAAAACA+GGG | + | chr5_2:3045937-3045956 | Msa0749510:CDS | 40.0% | |
| ACAAACGACCATAGACAACA+AGG | - | chr5_2:3045967-3045986 | None:intergenic | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | chr5_2:3046001-3046020 | None:intergenic | 40.0% | |
| GCATCAAGTGCAAATCTCTT+TGG | - | chr5_2:3046010-3046029 | None:intergenic | 40.0% | |
| CTCCTCTGAACAAGTATAAC+AGG | + | chr5_2:3046029-3046048 | Msa0749510:CDS | 40.0% | |
| TCCCTGTTATACTTGTTCAG+AGG | - | chr5_2:3046034-3046053 | None:intergenic | 40.0% | |
| TAGCAGAAAGCAATCTGCAA+GGG | - | chr5_2:3046172-3046191 | None:intergenic | 40.0% | |
| ATAGCAGAAAGCAATCTGCA+AGG | - | chr5_2:3046173-3046192 | None:intergenic | 40.0% | |
| ACATTTCCCTTGTCACAAGG+TGG | + | chr5_2:3039107-3039126 | Msa0749510:intron | 45.0% | |
| CATTTCCCTTGTCACAAGGT+GGG | + | chr5_2:3039108-3039127 | Msa0749510:intron | 45.0% | |
| TTACACCCACCTTGTGACAA+GGG | - | chr5_2:3039116-3039135 | None:intergenic | 45.0% | |
| TCCATCCACCACGATTTGAA+CGG | + | chr5_2:3039248-3039267 | Msa0749510:intron | 45.0% | |
| TTGAACCGTTCAAATCGTGG+TGG | - | chr5_2:3039256-3039275 | None:intergenic | 45.0% | |
| ! | TTGAAGCATCTTTGAGGGGA+GGG | - | chr5_2:3039687-3039706 | None:intergenic | 45.0% |
| ! | ATTGAAGCATCTTTGAGGGG+AGG | - | chr5_2:3039688-3039707 | None:intergenic | 45.0% |
| TCAAGCATGTTTAAGGGGAG+GGG | - | chr5_2:3039860-3039879 | None:intergenic | 45.0% | |
| TTCAAGCTTCTCTTAGGGGA+GGG | - | chr5_2:3039961-3039980 | None:intergenic | 45.0% | |
| ATTCAAGCTTCTCTTAGGGG+AGG | - | chr5_2:3039962-3039981 | None:intergenic | 45.0% | |
| TCAAGCATCTTATAGGGGAG+GGG | + | chr5_2:3040489-3040508 | Msa0749510:intron | 45.0% | |
| ACTGTACTGTGCATGGCAAT+TGG | + | chr5_2:3040755-3040774 | Msa0749510:intron | 45.0% | |
| GAAACAAAACGACGGCTAAG+AGG | - | chr5_2:3040855-3040874 | None:intergenic | 45.0% | |
| GCAATAGTCACGAGGAAAAG+AGG | - | chr5_2:3040919-3040938 | None:intergenic | 45.0% | |
| CAGAAGAACCCATTCTAGCA+AGG | - | chr5_2:3041031-3041050 | None:intergenic | 45.0% | |
| ! | CTTGCTAGAATGGGTTCTTC+TGG | + | chr5_2:3041029-3041048 | Msa0749510:intron | 45.0% |
| !! | CATGTTACCTGCTCTAGAGT+GGG | - | chr5_2:3041153-3041172 | None:intergenic | 45.0% |
| !! | ACATGTTACCTGCTCTAGAG+TGG | - | chr5_2:3041154-3041173 | None:intergenic | 45.0% |
| TGCATCTCTCAACAACTGGA+TGG | - | chr5_2:3041399-3041418 | None:intergenic | 45.0% | |
| !!! | GTCGGGCTTGTAGTTTTAGT+TGG | - | chr5_2:3041695-3041714 | None:intergenic | 45.0% |
| TCACAAGCCAACACAAGGAT+AGG | - | chr5_2:3042229-3042248 | None:intergenic | 45.0% | |
| CAACTAGGGGTAGAAAAAGG+CGG | - | chr5_2:3042471-3042490 | None:intergenic | 45.0% | |
| !! | GGGTTAGTCAATCCAACTCT+AGG | - | chr5_2:3043028-3043047 | None:intergenic | 45.0% |
| TGGATTGACTAACCCTGTCT+TGG | + | chr5_2:3043033-3043052 | Msa0749510:intron | 45.0% | |
| ! | CAATGCTACTGCAGCTCTAA+TGG | - | chr5_2:3043133-3043152 | None:intergenic | 45.0% |
| TACAAGCCTACGTCACATCA+CGG | - | chr5_2:3043298-3043317 | None:intergenic | 45.0% | |
| TACAAGCCTACGTCACATCA+CGG | - | chr5_2:3043298-3043317 | None:intergenic | 45.0% | |
| !! | CGCTTGCGGTTTTAATAGCT+TGG | - | chr5_2:3044132-3044151 | None:intergenic | 45.0% |
| CATAATGCCTTACACGCTTG+CGG | - | chr5_2:3044146-3044165 | None:intergenic | 45.0% | |
| ! | GCAGTCCGATTTGACTAATG+TGG | - | chr5_2:3044482-3044501 | None:intergenic | 45.0% |
| TAGAGGATAGCATGAGGTTG+TGG | - | chr5_2:3044859-3044878 | None:intergenic | 45.0% | |
| CTTCTCATAACCGAAGCTAC+CGG | + | chr5_2:3044913-3044932 | Msa0749510:CDS | 45.0% | |
| GCATGAACAGCATCCACAAT+GGG | - | chr5_2:3045012-3045031 | None:intergenic | 45.0% | |
| AGCATGAACAGCATCCACAA+TGG | - | chr5_2:3045013-3045032 | None:intergenic | 45.0% | |
| GTGGATGCTGTTCATGCTAA+AGG | + | chr5_2:3045015-3045034 | Msa0749510:CDS | 45.0% | |
| AGTTTATCAGCCGAATGGAC+AGG | + | chr5_2:3045195-3045214 | Msa0749510:intron | 45.0% | |
| ! | GATATTGGTGCCTGTCCATT+CGG | - | chr5_2:3045208-3045227 | None:intergenic | 45.0% |
| CAAAATTCACACCACCAAGG+CGG | + | chr5_2:3045281-3045300 | Msa0749510:CDS | 45.0% | |
| GCTAGAAATGCTATGGAAGC+TGG | + | chr5_2:3045352-3045371 | Msa0749510:CDS | 45.0% | |
| !! | TTGTTGCTTCAAAGGGCACT+AGG | + | chr5_2:3045460-3045479 | Msa0749510:intron | 45.0% |
| CTAACTGTGGTGCAAATTGC+AGG | + | chr5_2:3045506-3045525 | Msa0749510:intron | 45.0% | |
| TGATGGGGTTGAAATCCATG+GGG | + | chr5_2:3045532-3045551 | Msa0749510:CDS | 45.0% | |
| AAACCGACAACGGTTCTCAA+GGG | - | chr5_2:3045627-3045646 | None:intergenic | 45.0% | |
| CTTCCAAAGCAAACCGACAA+CGG | - | chr5_2:3045637-3045656 | None:intergenic | 45.0% | |
| AGACTCCAACCCTAACGAAT+TGG | + | chr5_2:3045739-3045758 | Msa0749510:CDS | 45.0% | |
| GACTCCAACCCTAACGAATT+GGG | + | chr5_2:3045740-3045759 | Msa0749510:CDS | 45.0% | |
| AAGTCCCAATTCGTTAGGGT+TGG | - | chr5_2:3045747-3045766 | None:intergenic | 45.0% | |
| ! | CCTTTGAAGGCCTTTCTCAT+CGG | - | chr5_2:3045875-3045894 | None:intergenic | 45.0% |
| !! | AAAGGCACTTTCATGGTTGC+AGG | + | chr5_2:3045890-3045909 | Msa0749510:CDS | 45.0% |
| !! | TGGCATTGATCCCATCATGT+CGG | - | chr5_2:3045925-3045944 | None:intergenic | 45.0% |
| TAGTGAGGAGATTCCACACT+TGG | - | chr5_2:3046135-3046154 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTTATTTTTGAT+AGG | - | chr5_2:3039491-3039510 | None:intergenic | 5.0% |
| !! | AAATTAAAAAAAAATATTGT+GGG | - | chr5_2:3040026-3040045 | None:intergenic | 5.0% |
| GTTACACCCACCTTGTGACA+AGG | - | chr5_2:3039117-3039136 | None:intergenic | 50.0% | |
| ! | ACCGTTCAAATCGTGGTGGA+TGG | - | chr5_2:3039252-3039271 | None:intergenic | 50.0% |
| GCAAGGCAGAGTTGAGACAT+GGG | + | chr5_2:3039581-3039600 | Msa0749510:intron | 50.0% | |
| CAAGGCAGAGTTGAGACATG+GGG | + | chr5_2:3039582-3039601 | Msa0749510:intron | 50.0% | |
| GTCGCAGGTCCAATTTGAGA+AGG | + | chr5_2:3039610-3039629 | Msa0749510:intron | 50.0% | |
| ! | TGAAGCATCTTTGAGGGGAG+GGG | - | chr5_2:3039686-3039705 | None:intergenic | 50.0% |
| ! | TCTAGCTTCTCTTAGGGGAG+AGG | - | chr5_2:3039789-3039808 | None:intergenic | 50.0% |
| TTACATTCCCCTCCCCTCTT+AGG | + | chr5_2:3039810-3039829 | Msa0749510:intron | 50.0% | |
| TCAAGCTTCTCTTAGGGGAG+GGG | - | chr5_2:3039960-3039979 | None:intergenic | 50.0% | |
| AGTCTGCACTGTACTGTGCA+TGG | + | chr5_2:3040748-3040767 | Msa0749510:intron | 50.0% | |
| TGAACATAACCCTGATGCCG+CGG | + | chr5_2:3040887-3040906 | Msa0749510:intron | 50.0% | |
| !! | ATCCAATCCCACTCTAGAGC+AGG | + | chr5_2:3041143-3041162 | Msa0749510:intron | 50.0% |
| !! | TACCTGCTCTAGAGTGGGAT+TGG | - | chr5_2:3041148-3041167 | None:intergenic | 50.0% |
| GAGATGCATTACAGACTGGC+AGG | + | chr5_2:3041411-3041430 | Msa0749510:intron | 50.0% | |
| CAGGAGATCAGATCCAGATC+CGG | + | chr5_2:3041430-3041449 | Msa0749510:intron | 50.0% | |
| TAACCATCTTCAGCCGGATC+TGG | - | chr5_2:3041446-3041465 | None:intergenic | 50.0% | |
| CGAGAGAGAGCCTTTGTCTT+TGG | - | chr5_2:3042001-3042020 | None:intergenic | 50.0% | |
| AGATACAGCTTACAGGGCTG+TGG | + | chr5_2:3042654-3042673 | Msa0749510:intron | 50.0% | |
| GATACAGCTTACAGGGCTGT+GGG | + | chr5_2:3042655-3042674 | Msa0749510:intron | 50.0% | |
| ATGTGTCCGTGATGTGACGT+AGG | + | chr5_2:3043289-3043308 | Msa0749510:intron | 50.0% | |
| TGACGTAGGCTTGTAGCTCT+TGG | + | chr5_2:3043303-3043322 | Msa0749510:intron | 50.0% | |
| GACGTAGGCTTGTAGCTCTT+GGG | + | chr5_2:3043304-3043323 | Msa0749510:intron | 50.0% | |
| ATGTGTCCGTGATGTGACGT+AGG | + | chr5_2:3043289-3043308 | Msa0749510:intron | 50.0% | |
| TGACGTAGGCTTGTAGCTCT+TGG | + | chr5_2:3043303-3043322 | Msa0749510:intron | 50.0% | |
| GACGTAGGCTTGTAGCTCTT+GGG | + | chr5_2:3043304-3043323 | Msa0749510:intron | 50.0% | |
| AAGATTAGCGGCGACTCTTG+TGG | - | chr5_2:3044188-3044207 | None:intergenic | 50.0% | |
| AGGTTGTGGAACGTTGCCAT+AGG | - | chr5_2:3044845-3044864 | None:intergenic | 50.0% | |
| ATCCAGACACGCCAGGTATA+TGG | + | chr5_2:3044959-3044978 | Msa0749510:CDS | 50.0% | |
| ! | ATGGACTAAAGAGCACGTCG+AGG | + | chr5_2:3044978-3044997 | Msa0749510:CDS | 50.0% |
| GTTGAAATCCATGGGGCTCA+TGG | + | chr5_2:3045539-3045558 | Msa0749510:CDS | 50.0% | |
| GATCCCTTGAGAACCGTTGT+CGG | + | chr5_2:3045621-3045640 | Msa0749510:CDS | 50.0% | |
| CAAACCGACAACGGTTCTCA+AGG | - | chr5_2:3045628-3045647 | None:intergenic | 50.0% | |
| !! | GAACCGTTGTCGGTTTGCTT+TGG | + | chr5_2:3045631-3045650 | Msa0749510:CDS | 50.0% |
| CCGATGAGAAAGGCCTTCAA+AGG | + | chr5_2:3045872-3045891 | Msa0749510:CDS | 50.0% | |
| !! | GGCCTTCAAAGGCACTTTCA+TGG | + | chr5_2:3045883-3045902 | Msa0749510:CDS | 50.0% |
| GAGGTTACGACCGACATGAT+GGG | + | chr5_2:3045912-3045931 | Msa0749510:CDS | 50.0% | |
| ! | GTCTGCCCTGTTTTCAGCTA+TGG | - | chr5_2:3045945-3045964 | None:intergenic | 50.0% |
| ! | AGGGCAGACCTTGTTGTCTA+TGG | + | chr5_2:3045956-3045975 | Msa0749510:CDS | 50.0% |
| CGCAAGGCAGAGTTGAGACA+TGG | + | chr5_2:3039580-3039599 | Msa0749510:intron | 55.0% | |
| GATCCAGATCCGGCTGAAGA+TGG | + | chr5_2:3041440-3041459 | Msa0749510:intron | 55.0% | |
| AAAAAGGCGGATCGCCCGTT+AGG | - | chr5_2:3042458-3042477 | None:intergenic | 55.0% | |
| GAGAAGACCTCCGTTAGAGC+CGG | - | chr5_2:3044899-3044918 | None:intergenic | 55.0% | |
| GTCAGAGACACCGGTAGCTT+CGG | - | chr5_2:3044926-3044945 | None:intergenic | 55.0% | |
| ! | TTGAGCGGTGTCAGAGACAC+CGG | - | chr5_2:3044935-3044954 | None:intergenic | 55.0% |
| GTGTCTCTGACACCGCTCAA+GGG | + | chr5_2:3044935-3044954 | Msa0749510:CDS | 55.0% | |
| CGTGTCTGGATACCCTTGAG+CGG | - | chr5_2:3044950-3044969 | None:intergenic | 55.0% | |
| GTCCATATACCTGGCGTGTC+TGG | - | chr5_2:3044964-3044983 | None:intergenic | 55.0% | |
| ! | CTAAAGAGCACGTCGAGGCT+TGG | + | chr5_2:3044983-3045002 | Msa0749510:CDS | 55.0% |
| CGAGGCTTGGAAACCCATTG+TGG | + | chr5_2:3044996-3045015 | Msa0749510:CDS | 55.0% | |
| TCATCTGTCCTTAGCCGCCT+TGG | - | chr5_2:3045298-3045317 | None:intergenic | 55.0% | |
| TCTCATCGGCACAAGGCTGT+CGG | - | chr5_2:3045861-3045880 | None:intergenic | 55.0% | |
| ! | CAGCCTTGTGCCGATGAGAA+AGG | + | chr5_2:3045862-3045881 | Msa0749510:CDS | 55.0% |
| AGGCCTTTCTCATCGGCACA+AGG | - | chr5_2:3045868-3045887 | None:intergenic | 55.0% | |
| GGCACTTTCATGGTTGCAGG+AGG | + | chr5_2:3045893-3045912 | Msa0749510:CDS | 55.0% | |
| GGAGGTTACGACCGACATGA+TGG | + | chr5_2:3045911-3045930 | Msa0749510:CDS | 55.0% | |
| ! | GGTGCTGTAGCATCCAAGTG+TGG | + | chr5_2:3046119-3046138 | Msa0749510:three_prime_UTR | 55.0% |
| GGCAGAGTTGAGACATGGGG+TGG | + | chr5_2:3039585-3039604 | Msa0749510:intron | 60.0% | |
| AGACATGGGGTGGATGTCGC+AGG | + | chr5_2:3039595-3039614 | Msa0749510:intron | 60.0% | |
| ! | CATCTTTGAGGGGAGGGGAG+GGG | - | chr5_2:3039681-3039700 | None:intergenic | 60.0% |
| ! | GCATCTTTGAGGGGAGGGGA+GGG | - | chr5_2:3039682-3039701 | None:intergenic | 60.0% |
| ! | AGCATCTTTGAGGGGAGGGG+AGG | - | chr5_2:3039683-3039702 | None:intergenic | 60.0% |
| AGGAAAAGAGGGGACAGCCG+CGG | - | chr5_2:3040907-3040926 | None:intergenic | 60.0% | |
| !! | CAGAGAGCCACCGGCTCTAA+CGG | + | chr5_2:3044886-3044905 | Msa0749510:CDS | 60.0% |
| AAGACCTCCGTTAGAGCCGG+TGG | - | chr5_2:3044896-3044915 | None:intergenic | 60.0% | |
| GGTGTCTCTGACACCGCTCA+AGG | + | chr5_2:3044934-3044953 | Msa0749510:CDS | 60.0% | |
| !! | CAAGGGTATCCAGACACGCC+AGG | + | chr5_2:3044952-3044971 | Msa0749510:CDS | 60.0% |
| TCACACCACCAAGGCGGCTA+AGG | + | chr5_2:3045287-3045306 | Msa0749510:CDS | 60.0% | |
| TCTGTCCTTAGCCGCCTTGG+TGG | - | chr5_2:3045295-3045314 | None:intergenic | 60.0% | |
| GTAGGTAGCCATGAGCCCCA+TGG | - | chr5_2:3045550-3045569 | None:intergenic | 60.0% | |
| TCATCGGCACAAGGCTGTCG+GGG | - | chr5_2:3045859-3045878 | None:intergenic | 60.0% | |
| CTCATCGGCACAAGGCTGTC+GGG | - | chr5_2:3045860-3045879 | None:intergenic | 60.0% | |
| !! | AGAGCCACCGGCTCTAACGG+AGG | + | chr5_2:3044889-3044908 | Msa0749510:CDS | 65.0% |
| AGGGGACAGCCGCGGCATCA+GGG | - | chr5_2:3040899-3040918 | None:intergenic | 70.0% | |
| GAGGGGACAGCCGCGGCATC+AGG | - | chr5_2:3040900-3040919 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 3039002 | 3046473 | 3039002 | ID=Msa0749510;Name=Msa0749510 |
| chr5_2 | mRNA | 3039002 | 3046473 | 3039002 | ID=Msa0749510-mRNA-1;Parent=Msa0749510;Name=Msa0749510-mRNA-1;_AED=0.26;_eAED=0.26;_QI=85|1|1|1|0.75|0.6|5|362|371 |
| chr5_2 | exon | 3039002 | 3039061 | 3039002 | ID=Msa0749510-mRNA-1:exon:1032;Parent=Msa0749510-mRNA-1 |
| chr5_2 | exon | 3044626 | 3044727 | 3044626 | ID=Msa0749510-mRNA-1:exon:1033;Parent=Msa0749510-mRNA-1 |
| chr5_2 | exon | 3044810 | 3045087 | 3044810 | ID=Msa0749510-mRNA-1:exon:1034;Parent=Msa0749510-mRNA-1 |
| chr5_2 | exon | 3045197 | 3045373 | 3045197 | ID=Msa0749510-mRNA-1:exon:1035;Parent=Msa0749510-mRNA-1 |
| chr5_2 | exon | 3045528 | 3046473 | 3045528 | ID=Msa0749510-mRNA-1:exon:1036;Parent=Msa0749510-mRNA-1 |
| chr5_2 | five_prime_UTR | 3039002 | 3039061 | 3039002 | ID=Msa0749510-mRNA-1:five_prime_utr;Parent=Msa0749510-mRNA-1 |
| chr5_2 | five_prime_UTR | 3044626 | 3044650 | 3044626 | ID=Msa0749510-mRNA-1:five_prime_utr;Parent=Msa0749510-mRNA-1 |
| chr5_2 | CDS | 3044651 | 3044727 | 3044651 | ID=Msa0749510-mRNA-1:cds;Parent=Msa0749510-mRNA-1 |
| chr5_2 | CDS | 3044810 | 3045087 | 3044810 | ID=Msa0749510-mRNA-1:cds;Parent=Msa0749510-mRNA-1 |
| chr5_2 | CDS | 3045197 | 3045373 | 3045197 | ID=Msa0749510-mRNA-1:cds;Parent=Msa0749510-mRNA-1 |
| chr5_2 | CDS | 3045528 | 3046111 | 3045528 | ID=Msa0749510-mRNA-1:cds;Parent=Msa0749510-mRNA-1 |
| chr5_2 | three_prime_UTR | 3046112 | 3046473 | 3046112 | ID=Msa0749510-mRNA-1:three_prime_utr;Parent=Msa0749510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
