AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1100710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100710 MtrunA17_Chr7g0219021 75.806 124 30 0 1 124 1 124 2.12e-67 205
Msa1100710 MtrunA17_Chr7g0219031 90.566 106 10 0 1 106 1 106 4.85e-66 196
Msa1100710 MtrunA17_Chr4g0061451 60.484 124 45 2 1 121 1 123 1.53e-47 155
Msa1100710 MtrunA17_Chr3g0086861 58.594 128 49 2 1 124 1 128 1.59e-47 159
Msa1100710 MtrunA17_Chr3g0121631 50.413 121 51 3 1 119 1 114 3.29e-35 119
Msa1100710 MtrunA17_Chr3g0119311 49.383 81 41 0 41 121 37 117 1.30e-25 94.7
Msa1100710 MtrunA17_Chr4g0035001 48.052 77 40 0 41 117 7 83 2.89e-23 89.7
Msa1100710 MtrunA17_Chr7g0263001 39.844 128 59 4 1 121 1 117 4.65e-22 85.9
Msa1100710 MtrunA17_Chr3g0116631 40.625 96 52 1 28 123 199 289 2.34e-21 87.4
Msa1100710 MtrunA17_Chr7g0266751 47.126 87 44 1 41 127 33 117 2.57e-21 84.0
Msa1100710 MtrunA17_Chr4g0035051 44.156 77 43 0 41 117 9 85 5.01e-21 82.8
Msa1100710 MtrunA17_Chr4g0035031 44.156 77 43 0 41 117 9 85 8.15e-21 84.0
Msa1100710 MtrunA17_Chr1g0181111 41.667 84 49 0 41 124 197 280 5.44e-20 83.6
Msa1100710 MtrunA17_Chr4g0058151 41.837 98 57 0 27 124 203 300 5.92e-20 84.0
Msa1100710 MtrunA17_Chr4g0058151 43.373 83 45 1 41 121 123 205 3.87e-12 62.4
Msa1100710 MtrunA17_Chr4g0042161 47.674 86 45 0 38 123 49 134 6.53e-20 80.5
Msa1100710 MtrunA17_Chr1g0168601 50.649 77 38 0 41 117 154 230 1.26e-19 82.0
Msa1100710 MtrunA17_Chr1g0168601 40.625 64 37 1 58 121 80 142 8.61e-11 58.2
Msa1100710 MtrunA17_Chr2g0278661 44.156 77 43 0 41 117 8 84 1.64e-19 81.6
Msa1100710 MtrunA17_Chr4g0031091 34.409 93 61 0 26 118 19 111 2.34e-18 75.5
Msa1100710 MtrunA17_Chr4g0050781 41.558 77 45 0 41 117 8 84 5.68e-18 77.0
Msa1100710 MtrunA17_Chr3g0088511 44.444 81 44 1 34 114 27 106 2.07e-17 73.9
Msa1100710 MtrunA17_Chr1g0198431 40.000 85 51 0 36 120 188 272 2.54e-16 73.9
Msa1100710 MtrunA17_Chr3g0101061 45.161 93 46 3 29 119 28 117 2.92e-16 74.7
Msa1100710 MtrunA17_Chr5g0419351 42.667 75 43 0 42 116 12 86 3.41e-16 71.6
Msa1100710 MtrunA17_Chr6g0481071 38.202 89 53 1 40 128 95 181 7.17e-16 70.9
Msa1100710 MtrunA17_Chr4g0042151 40.196 102 55 2 24 121 24 123 4.59e-15 68.9
Msa1100710 MtrunA17_Chr7g0267571 41.463 82 48 0 38 119 210 291 3.74e-14 68.2
Msa1100710 MtrunA17_Chr7g0267571 38.554 83 50 1 41 123 110 191 6.23e-12 62.0
Msa1100710 MtrunA17_Chr1g0210241 32.911 79 53 0 41 119 8 86 9.88e-14 66.6
Msa1100710 MtrunA17_Chr4g0070231 41.333 75 44 0 42 116 133 207 1.43e-13 67.0
Msa1100710 MtrunA17_Chr2g0290191 39.759 83 48 1 37 119 1 81 1.71e-13 66.6
Msa1100710 MtrunA17_Chr5g0447761 41.975 81 45 1 39 119 5 83 2.00e-13 66.6
Msa1100710 MtrunA17_Chr7g0276201 36.782 87 55 0 35 121 99 185 2.24e-13 66.6
Msa1100710 MtrunA17_Chr8g0344491 40.000 75 45 0 42 116 149 223 4.03e-13 65.9
Msa1100710 MtrunA17_Chr4g0038111 39.450 109 58 3 34 142 333 433 5.49e-13 65.5
Msa1100710 MtrunA17_Chr3g0139111 40.789 76 45 0 41 116 146 221 6.67e-13 65.1
Msa1100710 MtrunA17_Chr3g0144311 34.821 112 57 3 31 126 16 127 6.79e-13 64.3
Msa1100710 MtrunA17_Chr4g0065741 33.750 80 53 0 38 117 69 148 7.33e-13 62.8
Msa1100710 MtrunA17_Chr6g0449481 32.143 140 78 4 7 130 99 237 8.81e-13 64.7
Msa1100710 MtrunA17_Chr1g0201001 33.645 107 70 1 28 133 17 123 9.70e-13 64.7
Msa1100710 MtrunA17_Chr1g0163591 39.423 104 58 4 21 124 144 242 1.08e-12 64.7
Msa1100710 MtrunA17_Chr1g0177101 37.975 79 49 0 38 116 205 283 1.78e-12 63.5
Msa1100710 MtrunA17_Chr3g0127751 36.782 87 54 1 40 126 26 111 2.47e-12 62.8
Msa1100710 MtrunA17_Chr1g0179701 40.000 80 47 1 40 119 340 418 3.91e-12 62.8
Msa1100710 MtrunA17_Chr7g0276531 43.333 60 34 0 40 99 18 77 6.19e-12 61.6
Msa1100710 MtrunA17_Chr8g0346011 41.558 77 44 1 40 116 37 112 6.45e-12 62.0
Msa1100710 MtrunA17_Chr6g0466501 36.538 104 64 2 40 143 304 405 7.20e-12 62.4
Msa1100710 MtrunA17_Chr6g0465691 36.538 104 64 2 40 143 222 323 7.21e-12 62.0
Msa1100710 MtrunA17_Chr2g0327921 33.750 80 53 0 40 119 7 86 9.34e-12 57.8
Msa1100710 MtrunA17_Chr7g0259641 31.304 115 75 2 7 119 240 352 1.01e-11 62.0
Msa1100710 MtrunA17_Chr7g0259641 33.333 84 54 1 35 118 681 762 7.67e-11 59.3
Msa1100710 MtrunA17_Chr6g0466451 41.250 80 46 1 40 119 209 287 1.03e-11 61.6
Msa1100710 MtrunA17_Chr6g0465631 41.250 80 46 1 40 119 209 287 1.04e-11 61.6
Msa1100710 MtrunA17_Chr8g0383661 42.667 75 41 2 41 114 304 377 1.63e-11 61.2
Msa1100710 MtrunA17_Chr8g0360551 33.628 113 68 3 9 116 38 148 2.55e-11 60.5
Msa1100710 MtrunA17_Chr7g0259671 31.193 109 71 2 7 113 246 352 2.87e-11 60.5
Msa1100710 MtrunA17_Chr7g0268551 35.443 79 51 0 40 118 348 426 3.15e-11 60.1
Msa1100710 MtrunA17_Chr7g0266451 37.805 82 48 1 40 121 101 179 3.20e-11 60.1
Msa1100710 MtrunA17_Chr4g0017401 34.737 95 52 3 41 128 17 108 3.30e-11 59.7
Msa1100710 MtrunA17_Chr3g0135111 37.374 99 60 1 40 138 10 106 3.35e-11 60.1
Msa1100710 MtrunA17_Chr3g0129451 42.667 75 41 2 41 114 344 417 3.38e-11 60.1
Msa1100710 MtrunA17_Chr6g0465751 38.750 80 48 1 40 119 304 382 7.23e-11 59.3
Msa1100710 MtrunA17_Chr1g0186351 35.443 79 49 1 41 119 7 83 7.50e-11 59.3
Msa1100710 MtrunA17_Chr4g0018581 39.024 82 50 0 35 116 446 527 7.99e-11 59.3
Msa1100710 MtrunA17_Chr5g0426311 38.158 76 46 1 41 116 17 91 8.02e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100710 AT5G61030.2 59.664 119 48 0 1 119 1 119 8.32e-49 159
Msa1100710 AT5G61030.1 59.664 119 48 0 1 119 1 119 8.32e-49 159
Msa1100710 AT1G74230.1 55.085 118 46 3 1 118 1 111 2.58e-39 134
Msa1100710 AT4G13850.4 48.333 120 57 2 1 120 1 115 4.98e-33 114
Msa1100710 AT4G13850.3 48.333 120 57 2 1 120 1 115 9.32e-33 114
Msa1100710 AT4G13850.2 48.333 120 57 2 1 120 1 115 1.20e-32 114
Msa1100710 AT4G13850.1 48.333 120 57 2 1 120 1 115 1.38e-32 114
Msa1100710 AT3G23830.2 42.953 149 64 5 1 146 1 131 6.91e-26 95.9
Msa1100710 AT3G23830.1 42.953 149 64 5 1 146 1 131 6.91e-26 95.9
Msa1100710 AT5G59865.1 49.515 103 50 2 24 126 11 111 1.21e-23 89.7
Msa1100710 AT4G39260.3 44.944 89 46 1 41 129 7 92 2.39e-23 88.2
Msa1100710 AT5G06210.1 46.154 91 48 1 39 129 33 122 3.85e-23 89.4
Msa1100710 AT1G18630.1 51.852 81 39 0 36 116 32 112 9.96e-23 88.6
Msa1100710 AT2G37220.1 50.000 80 40 0 41 120 205 284 6.75e-22 89.4
Msa1100710 AT2G37220.1 40.449 89 51 1 41 127 92 180 5.38e-12 62.4
Msa1100710 AT2G21660.2 46.753 77 41 0 41 117 9 85 9.04e-22 86.3
Msa1100710 AT3G08000.1 50.602 83 41 0 41 123 42 124 1.12e-21 85.5
Msa1100710 AT4G24770.1 48.235 85 43 1 41 124 245 329 2.29e-21 88.6
Msa1100710 AT4G24770.1 41.250 80 47 0 40 119 150 229 6.48e-12 62.4
Msa1100710 AT4G24770.2 48.235 85 43 1 41 124 245 329 2.29e-21 88.6
Msa1100710 AT4G24770.2 41.250 80 47 0 40 119 150 229 6.48e-12 62.4
Msa1100710 AT3G53460.1 49.398 83 42 0 41 123 258 340 4.16e-21 87.8
Msa1100710 AT3G53460.3 49.398 83 42 0 41 123 258 340 4.16e-21 87.8
Msa1100710 AT3G53460.2 49.398 83 42 0 41 123 258 340 4.16e-21 87.8
Msa1100710 AT3G53460.4 49.398 83 42 0 41 123 279 361 5.17e-21 87.8
Msa1100710 AT2G37510.1 48.101 79 41 0 36 114 30 108 3.39e-19 79.0
Msa1100710 AT5G47320.1 36.667 120 67 2 1 120 1 111 4.05e-19 80.5
Msa1100710 AT5G50250.1 45.679 81 44 0 41 121 208 288 6.66e-19 81.3
Msa1100710 AT5G50250.1 42.500 80 46 0 40 119 113 192 1.39e-12 63.9
Msa1100710 AT4G13860.1 50.667 75 37 0 39 113 2 76 1.81e-18 75.5
Msa1100710 AT3G46020.1 41.758 91 51 1 39 127 6 96 3.72e-18 75.1
Msa1100710 AT3G26420.1 40.426 94 54 1 41 134 8 99 9.43e-18 77.4
Msa1100710 AT2G21660.1 48.544 103 53 0 41 143 9 111 2.06e-17 75.1
Msa1100710 AT4G39260.2 49.057 106 54 0 41 146 7 112 4.67e-17 73.2
Msa1100710 AT4G39260.1 49.057 106 54 0 41 146 7 112 1.24e-16 73.2
Msa1100710 AT1G13690.1 42.667 75 43 0 42 116 15 89 6.56e-16 71.2
Msa1100710 AT2G27330.1 40.909 88 49 2 27 114 11 95 6.88e-16 69.7
Msa1100710 AT5G54580.1 45.238 84 46 0 39 122 55 138 1.32e-15 70.1
Msa1100710 AT1G60000.1 45.455 77 42 0 41 117 178 254 1.39e-15 72.0
Msa1100710 AT4G39260.4 41.935 62 36 0 41 102 7 68 4.23e-15 67.4
Msa1100710 AT2G46780.1 41.573 89 48 2 40 125 22 109 1.26e-14 70.1
Msa1100710 AT2G46780.2 41.573 89 48 2 40 125 22 109 1.26e-14 70.1
Msa1100710 AT5G55550.2 43.038 79 43 1 41 119 7 83 2.05e-14 69.7
Msa1100710 AT5G55550.3 43.038 79 43 1 41 119 7 83 2.05e-14 69.7
Msa1100710 AT5G55550.6 43.038 79 43 1 41 119 7 83 2.05e-14 69.7
Msa1100710 AT5G55550.11 43.038 79 43 1 41 119 7 83 2.05e-14 69.7
Msa1100710 AT3G14100.1 40.000 75 45 0 42 116 146 220 2.20e-14 69.7
Msa1100710 AT5G55550.5 43.038 79 43 1 41 119 7 83 2.23e-14 69.7
Msa1100710 AT5G55550.4 43.038 79 43 1 41 119 7 83 2.23e-14 69.7
Msa1100710 AT5G55550.9 43.038 79 43 1 41 119 7 83 2.23e-14 69.7
Msa1100710 AT5G55550.7 43.038 79 43 1 41 119 7 83 2.23e-14 69.7
Msa1100710 AT5G55550.1 43.038 79 43 1 41 119 7 83 2.23e-14 69.7
Msa1100710 AT3G20930.1 33.684 95 62 1 37 130 279 373 2.47e-14 69.3
Msa1100710 AT4G13860.2 54.237 59 27 0 56 114 2 60 2.48e-14 64.3
Msa1100710 AT3G52380.1 40.964 83 48 1 41 123 117 198 2.93e-14 68.9
Msa1100710 AT3G52380.1 38.636 88 54 0 38 125 217 304 2.08e-13 66.6
Msa1100710 AT1G73530.1 38.750 80 49 0 40 119 77 156 3.40e-14 67.0
Msa1100710 AT1G22330.1 40.777 103 58 3 40 140 17 118 4.75e-14 68.2
Msa1100710 AT4G26650.1 41.772 79 44 1 41 119 16 92 5.21e-14 68.6
Msa1100710 AT4G26650.2 41.772 79 44 1 41 119 13 89 5.89e-14 68.6
Msa1100710 AT1G54080.1 38.667 75 46 0 42 116 150 224 8.78e-14 68.2
Msa1100710 AT5G55550.10 45.070 71 37 1 41 111 7 75 1.09e-13 67.8
Msa1100710 AT5G55550.8 45.070 71 37 1 41 111 7 75 1.11e-13 67.8
Msa1100710 AT2G37510.2 36.538 104 41 1 36 114 30 133 1.12e-13 65.1
Msa1100710 AT5G04280.1 33.000 100 65 1 40 137 7 106 1.22e-13 67.0
Msa1100710 AT1G76460.1 42.857 84 46 2 40 122 24 106 1.69e-13 66.6
Msa1100710 AT3G07810.1 37.975 79 47 1 41 119 7 83 3.57e-13 66.2
Msa1100710 AT3G07810.2 37.975 79 47 1 41 119 7 83 4.21e-13 66.2
Msa1100710 AT1G60650.2 32.692 104 68 1 39 142 11 112 5.18e-13 65.1
Msa1100710 AT1G60650.1 32.692 104 68 1 39 142 11 112 5.18e-13 65.1
Msa1100710 AT1G33470.2 48.276 58 30 0 41 98 8 65 5.72e-13 64.7
Msa1100710 AT1G33470.3 48.276 58 30 0 41 98 8 65 5.77e-13 64.7
Msa1100710 AT1G33470.1 48.276 58 30 0 41 98 8 65 5.78e-13 64.7
Msa1100710 AT5G59860.1 43.243 74 37 1 45 118 76 144 5.92e-13 63.2
Msa1100710 AT1G22910.2 33.333 93 58 1 40 128 13 105 1.53e-12 63.5
Msa1100710 AT1G22910.1 33.333 93 58 1 40 128 13 105 1.91e-12 63.2
Msa1100710 AT4G14300.1 41.860 86 48 1 41 126 7 90 3.17e-12 63.5
Msa1100710 AT4G14300.2 41.860 86 48 1 41 126 7 90 3.17e-12 63.5
Msa1100710 AT1G17370.2 38.667 75 46 0 42 116 141 215 3.58e-12 63.5
Msa1100710 AT5G11412.1 38.961 77 46 1 40 116 52 127 3.59e-12 61.2
Msa1100710 AT3G20930.2 32.000 100 62 2 37 130 279 378 3.61e-12 63.2
Msa1100710 AT1G17370.1 38.667 75 46 0 42 116 141 215 3.73e-12 63.2
Msa1100710 AT1G22910.3 33.333 93 58 1 40 128 13 105 5.01e-12 62.8
Msa1100710 AT5G47620.1 45.161 62 34 0 37 98 3 64 5.76e-12 62.8
Msa1100710 AT5G47620.2 45.161 62 34 0 37 98 3 64 5.76e-12 62.8
Msa1100710 AT5G47620.5 45.161 62 34 0 37 98 3 64 5.76e-12 62.8
Msa1100710 AT5G47620.4 45.161 62 34 0 37 98 3 64 6.02e-12 62.8
Msa1100710 AT4G34110.1 38.636 88 53 1 32 119 310 396 6.23e-12 62.8
Msa1100710 AT4G34110.1 35.632 87 56 0 42 128 38 124 5.95e-11 60.1
Msa1100710 AT2G19380.1 34.091 88 57 1 33 120 401 487 6.32e-12 62.8
Msa1100710 AT1G49760.1 38.889 90 55 0 39 128 44 133 7.34e-12 62.8
Msa1100710 AT1G49760.1 40.000 80 47 1 40 119 327 405 4.56e-11 60.5
Msa1100710 AT1G49760.2 38.889 90 55 0 39 128 44 133 7.34e-12 62.8
Msa1100710 AT1G49760.2 40.000 80 47 1 40 119 327 405 4.56e-11 60.5
Msa1100710 AT1G20880.2 38.202 89 51 2 40 125 24 111 7.87e-12 62.0
Msa1100710 AT1G20880.3 38.202 89 51 2 40 125 24 111 7.87e-12 62.0
Msa1100710 AT1G20880.1 38.202 89 51 2 40 125 24 111 7.87e-12 62.0
Msa1100710 AT1G78260.1 38.961 77 46 1 40 116 17 92 9.45e-12 61.6
Msa1100710 AT1G54080.2 36.709 79 46 1 42 116 150 228 9.77e-12 62.0
Msa1100710 AT1G78260.2 38.961 77 46 1 40 116 17 92 1.01e-11 61.6
Msa1100710 AT1G71800.1 39.474 76 46 0 42 117 11 86 1.10e-11 62.0
Msa1100710 AT2G21690.1 34.722 72 47 0 42 113 9 80 1.17e-11 58.9
Msa1100710 AT2G33410.1 39.241 79 46 1 41 119 7 83 1.20e-11 62.0
Msa1100710 AT1G48920.1 37.500 104 64 1 39 142 296 398 1.24e-11 62.0
Msa1100710 AT3G16380.1 38.202 89 54 1 31 119 295 382 2.78e-11 60.8
Msa1100710 AT5G51300.1 44.000 75 42 0 42 116 482 556 4.09e-11 60.5
Msa1100710 AT5G51300.2 44.000 75 42 0 42 116 482 556 4.09e-11 60.5
Msa1100710 AT5G51300.3 44.000 75 42 0 42 116 482 556 4.09e-11 60.5
Msa1100710 AT5G53680.1 37.662 77 47 1 40 116 13 88 4.55e-11 58.2
Msa1100710 AT2G22100.1 36.709 79 49 1 33 111 156 233 7.24e-11 59.7
Msa1100710 AT3G13224.3 31.068 103 71 0 35 137 95 197 9.09e-11 59.3

Find 59 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGCGTTCTTTGGTAAAA+TGG 0.181499 7_3:+31016861 Msa1100710:exon
TATCATGTATGCTTCGTAAT+TGG 0.220968 7_3:+31018699 Msa1100710:three_prime_UTR
ATATTATGTAGAAACAAAAT+TGG 0.299018 7_3:+31018779 Msa1100710:three_prime_UTR
GGAAGCATCTTCTGCCCTTC+AGG 0.322496 7_3:+31017981 Msa1100710:CDS
GTTTGAGCAATGGCGTTCTT+TGG 0.330058 7_3:+31016853 Msa1100710:exon
CAAGGCAGGTCCAAAGGATT+TGG 0.333728 7_3:+31017934 Msa1100710:CDS
GGCTATAGTGGCGGCGGTGG+TGG 0.345801 7_3:+31018619 Msa1100710:CDS
GGCTATAGTGGTGGCGGCGG+TGG 0.353167 7_3:+31018640 Msa1100710:CDS
GCTCAAGAAAGGCCACGTTC+TGG 0.386735 7_3:+31018562 Msa1100710:CDS
TATAGTGGTGGCGGCGGTGG+TGG 0.391279 7_3:+31018643 Msa1100710:CDS
TTTATCTATATCTACTCCTT+TGG 0.399289 7_3:+31016927 Msa1100710:CDS
GGCGGCGGTGGTGGCTATGG+TGG 0.400748 7_3:+31018652 Msa1100710:CDS
CTTTGGACCTGCCTTGTTCA+CGG 0.409016 7_3:-31017927 None:intergenic
GGTGGCGGCGGTGGTGGCTA+TGG 0.413997 7_3:+31018649 Msa1100710:CDS
CATAGGGAGCAAAACTTTCT+CGG 0.428202 7_3:-31017103 None:intergenic
GGCGGTGGTGGCTATGGTGG+AGG 0.431253 7_3:+31018655 Msa1100710:CDS
GGCTATGGCGGCGATGGTGG+TGG 0.433850 7_3:+31018598 Msa1100710:CDS
CTCAAGAAAGGCCACGTTCT+GGG 0.434456 7_3:+31018563 Msa1100710:CDS
GGCGATGGTGGTGGCTATAG+TGG 0.434840 7_3:+31018607 Msa1100710:CDS
AGTTACGAAGCCAAATCCTT+TGG 0.434906 7_3:-31017944 None:intergenic
GGTGGTGGCTATGGCGGCGA+TGG 0.441639 7_3:+31018592 Msa1100710:CDS
GGGTACAGTGGTGGTGGCTA+TGG 0.443654 7_3:+31018583 Msa1100710:CDS
ATGGCGTTCTTTGGTAAAAT+GGG 0.448549 7_3:+31016862 Msa1100710:CDS
GGTGGCTATAGTGGCGGCGG+TGG 0.457503 7_3:+31018616 Msa1100710:CDS
GGCGGCGGTGGTGGCTATAG+TGG 0.457920 7_3:+31018628 Msa1100710:CDS
ATGTTGTAACAGGAACTTCA+TGG 0.461718 7_3:+31018517 Msa1100710:intron
GGTGGCTATGGCGGCGATGG+TGG 0.474897 7_3:+31018595 Msa1100710:CDS
GGTGGAGGCGGCTACTGACT+TGG 0.494325 7_3:+31018670 Msa1100710:exon
TCTGCAAAGCTTTATGTTGG+AGG 0.496801 7_3:+31016976 Msa1100710:CDS
ATCTTCTGCCCTTCAGGCCA+TGG 0.501939 7_3:+31017987 Msa1100710:CDS
CCTTGTTATCCATGGCCTGA+AGG 0.507202 7_3:-31017996 None:intergenic
TCATCTGCAAAGCTTTATGT+TGG 0.509557 7_3:+31016973 Msa1100710:CDS
CCCTATGGAGAAGTTGTTGA+TGG 0.511355 7_3:+31017119 Msa1100710:CDS
TACAGTGGTGGTGGCTATGG+CGG 0.513740 7_3:+31018586 Msa1100710:CDS
CTTGTTATCCATGGCCTGAA+GGG 0.523916 7_3:-31017995 None:intergenic
ATGACATGGATCTAATTGCT+TGG 0.526965 7_3:-31016954 None:intergenic
CTATGCTTCTACTCAAACAA+TGG 0.535809 7_3:-31018733 None:intergenic
CGTTCTGGGTACAGTGGTGG+TGG 0.540584 7_3:+31018577 Msa1100710:CDS
GGTGGTGGCTATGGTGGAGG+CGG 0.542334 7_3:+31018658 Msa1100710:CDS
TGATAATACCTTGTTATCCA+TGG 0.548529 7_3:-31018004 None:intergenic
ACCATCAACAACTTCTCCAT+AGG 0.559308 7_3:-31017120 None:intergenic
TCATCGACCGTGAACAAGGC+AGG 0.562492 7_3:+31017920 Msa1100710:CDS
CCTTCAGGCCATGGATAACA+AGG 0.562607 7_3:+31017996 Msa1100710:CDS
GTTATCATCGACCGTGAACA+AGG 0.569596 7_3:+31017916 Msa1100710:CDS
CGTGAACAAGGCAGGTCCAA+AGG 0.574639 7_3:+31017928 Msa1100710:CDS
GGTGGCTATAGTGGTGGCGG+CGG 0.574884 7_3:+31018637 Msa1100710:CDS
CCATCAACAACTTCTCCATA+GGG 0.583632 7_3:-31017119 None:intergenic
ATAAAGCTTTGCAGATGACA+TGG 0.587694 7_3:-31016968 None:intergenic
GAGTGAACTATGCTCAAGAA+AGG 0.590889 7_3:+31018551 Msa1100710:CDS
GGTGGTGGCTATAGTGGCGG+CGG 0.599616 7_3:+31018613 Msa1100710:CDS
GGTGGTGGCTATAGTGGTGG+CGG 0.611716 7_3:+31018634 Msa1100710:CDS
CCACGTTCTGGGTACAGTGG+TGG 0.613795 7_3:+31018574 Msa1100710:CDS
GGCGGTGGTGGCTATAGTGG+TGG 0.618113 7_3:+31018631 Msa1100710:CDS
CTAATTGCTTGGAATGCCAA+AGG 0.621523 7_3:-31016943 None:intergenic
CCACCACTGTACCCAGAACG+TGG 0.624550 7_3:-31018574 None:intergenic
AGGCCACGTTCTGGGTACAG+TGG 0.652408 7_3:+31018571 Msa1100710:CDS
TAGATAAATCATGATTGATG+TGG 0.663159 7_3:-31016912 None:intergenic
GATGGTGGTGGCTATAGTGG+CGG 0.667344 7_3:+31018610 Msa1100710:CDS
TGTAACAGGAACTTCATGGT+CGG 0.684162 7_3:+31018521 Msa1100710:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTACGATTTCAAATTTT+TGG - chr7_3:31017483-31017502 None:intergenic 15.0%
!! TTATATATGATTTGATAGAT+TGG + chr7_3:31017749-31017768 Msa1100710:intron 15.0%
!!! ATTTTTTGCATTCATTATAA+TGG - chr7_3:31018208-31018227 None:intergenic 15.0%
!! AAAAAATATAATGATGACTT+GGG + chr7_3:31018221-31018240 Msa1100710:intron 15.0%
!! ATACAAGTATAAATATTAGT+TGG - chr7_3:31018341-31018360 None:intergenic 15.0%
!! ATATTATGTAGAAACAAAAT+TGG + chr7_3:31018779-31018798 Msa1100710:three_prime_UTR 15.0%
!!! TAATTACGATTTCAAATTTT+TGG - chr7_3:31017483-31017502 None:intergenic 15.0%
!! TTATATATGATTTGATAGAT+TGG + chr7_3:31017749-31017768 Msa1100710:intron 15.0%
!!! ATTTTTTGCATTCATTATAA+TGG - chr7_3:31018208-31018227 None:intergenic 15.0%
!! AAAAAATATAATGATGACTT+GGG + chr7_3:31018221-31018240 Msa1100710:intron 15.0%
!! ATACAAGTATAAATATTAGT+TGG - chr7_3:31018341-31018360 None:intergenic 15.0%
!! ATATTATGTAGAAACAAAAT+TGG + chr7_3:31018779-31018798 Msa1100710:three_prime_UTR 15.0%
!! TGATGTTCCTTTAATTATAT+AGG + chr7_3:31017272-31017291 Msa1100710:intron 20.0%
!! CAAAAAGCCTATATAATTAA+AGG - chr7_3:31017282-31017301 None:intergenic 20.0%
!!! TTCAAATTTTTGGTGTTTTT+TGG - chr7_3:31017473-31017492 None:intergenic 20.0%
!! TAAAATCACTCAAAAAAAGT+GGG + chr7_3:31017672-31017691 Msa1100710:intron 20.0%
!!! ATAATTTTCATTGAAAGTCA+AGG + chr7_3:31017792-31017811 Msa1100710:intron 20.0%
!! TGTTTATTTGATACAAGTTA+AGG + chr7_3:31018099-31018118 Msa1100710:intron 20.0%
!! CAAAAAATATAATGATGACT+TGG + chr7_3:31018220-31018239 Msa1100710:intron 20.0%
!! ATGCACATAATATTAATTAG+AGG + chr7_3:31018248-31018267 Msa1100710:intron 20.0%
!! TGCACATAATATTAATTAGA+GGG + chr7_3:31018249-31018268 Msa1100710:intron 20.0%
!!! AATGTCGATACATTTTTATA+AGG + chr7_3:31018378-31018397 Msa1100710:intron 20.0%
!!! ATCTAAAATTATGTTGTAAC+AGG + chr7_3:31018507-31018526 Msa1100710:intron 20.0%
!! TGATGTTCCTTTAATTATAT+AGG + chr7_3:31017272-31017291 Msa1100710:intron 20.0%
!! CAAAAAGCCTATATAATTAA+AGG - chr7_3:31017282-31017301 None:intergenic 20.0%
!!! TTCAAATTTTTGGTGTTTTT+TGG - chr7_3:31017473-31017492 None:intergenic 20.0%
!! TAAAATCACTCAAAAAAAGT+GGG + chr7_3:31017672-31017691 Msa1100710:intron 20.0%
!!! ATAATTTTCATTGAAAGTCA+AGG + chr7_3:31017792-31017811 Msa1100710:intron 20.0%
!! TGTTTATTTGATACAAGTTA+AGG + chr7_3:31018099-31018118 Msa1100710:intron 20.0%
!! CAAAAAATATAATGATGACT+TGG + chr7_3:31018220-31018239 Msa1100710:intron 20.0%
!! ATGCACATAATATTAATTAG+AGG + chr7_3:31018248-31018267 Msa1100710:intron 20.0%
!! TGCACATAATATTAATTAGA+GGG + chr7_3:31018249-31018268 Msa1100710:intron 20.0%
!!! AATGTCGATACATTTTTATA+AGG + chr7_3:31018378-31018397 Msa1100710:intron 20.0%
!!! ATCTAAAATTATGTTGTAAC+AGG + chr7_3:31018507-31018526 Msa1100710:intron 20.0%
! TAGATAAATCATGATTGATG+TGG - chr7_3:31016915-31016934 None:intergenic 25.0%
! TTTATCTATATCTACTCCTT+TGG + chr7_3:31016927-31016946 Msa1100710:CDS 25.0%
! TACTAGTTATTCATCATTTC+AGG + chr7_3:31017168-31017187 Msa1100710:intron 25.0%
! ATTTAGAGAGAATTTACAAG+CGG - chr7_3:31017223-31017242 None:intergenic 25.0%
! ACAATCGCTCAAAAAATAAT+GGG - chr7_3:31017339-31017358 None:intergenic 25.0%
! AACAATCGCTCAAAAAATAA+TGG - chr7_3:31017340-31017359 None:intergenic 25.0%
! AGGACTAGAAAATAACAATA+GGG + chr7_3:31017634-31017653 Msa1100710:intron 25.0%
! CTAAAATCACTCAAAAAAAG+TGG + chr7_3:31017671-31017690 Msa1100710:intron 25.0%
! AAAATCACTCAAAAAAAGTG+GGG + chr7_3:31017673-31017692 Msa1100710:intron 25.0%
! CAAGTTAAGGAAAAACTATA+AGG + chr7_3:31018112-31018131 Msa1100710:intron 25.0%
! TATTAGTGAAAGAAAGAGAA+TGG + chr7_3:31018141-31018160 Msa1100710:intron 25.0%
!!! ACAAAATTGGAACTACTTTT+TGG + chr7_3:31018792-31018811 Msa1100710:three_prime_UTR 25.0%
!!! TTTTGGTTTCATCTTTAACT+TGG + chr7_3:31018809-31018828 Msa1100710:three_prime_UTR 25.0%
! TAGATAAATCATGATTGATG+TGG - chr7_3:31016915-31016934 None:intergenic 25.0%
! TTTATCTATATCTACTCCTT+TGG + chr7_3:31016927-31016946 Msa1100710:CDS 25.0%
! TACTAGTTATTCATCATTTC+AGG + chr7_3:31017168-31017187 Msa1100710:intron 25.0%
! ATTTAGAGAGAATTTACAAG+CGG - chr7_3:31017223-31017242 None:intergenic 25.0%
! ACAATCGCTCAAAAAATAAT+GGG - chr7_3:31017339-31017358 None:intergenic 25.0%
! AACAATCGCTCAAAAAATAA+TGG - chr7_3:31017340-31017359 None:intergenic 25.0%
! AGGACTAGAAAATAACAATA+GGG + chr7_3:31017634-31017653 Msa1100710:intron 25.0%
! CTAAAATCACTCAAAAAAAG+TGG + chr7_3:31017671-31017690 Msa1100710:intron 25.0%
! AAAATCACTCAAAAAAAGTG+GGG + chr7_3:31017673-31017692 Msa1100710:intron 25.0%
! CAAGTTAAGGAAAAACTATA+AGG + chr7_3:31018112-31018131 Msa1100710:intron 25.0%
! TATTAGTGAAAGAAAGAGAA+TGG + chr7_3:31018141-31018160 Msa1100710:intron 25.0%
!!! ACAAAATTGGAACTACTTTT+TGG + chr7_3:31018792-31018811 Msa1100710:three_prime_UTR 25.0%
!!! TTTTGGTTTCATCTTTAACT+TGG + chr7_3:31018809-31018828 Msa1100710:three_prime_UTR 25.0%
ATCATGTTGAATTGTCTGAA+TGG + chr7_3:31017010-31017029 Msa1100710:intron 30.0%
! TTATTCATCATTTCAGGTAG+AGG + chr7_3:31017174-31017193 Msa1100710:intron 30.0%
GATTGTTACCCTTTATGATT+TGG + chr7_3:31017353-31017372 Msa1100710:intron 30.0%
GGGATATACCAAATCATAAA+GGG - chr7_3:31017364-31017383 None:intergenic 30.0%
TGGGATATACCAAATCATAA+AGG - chr7_3:31017365-31017384 None:intergenic 30.0%
!! AATTTTAAAGAAAGGCATGC+TGG + chr7_3:31017558-31017577 Msa1100710:intron 30.0%
GAGGACTAGAAAATAACAAT+AGG + chr7_3:31017633-31017652 Msa1100710:intron 30.0%
GGACTAGAAAATAACAATAG+GGG + chr7_3:31017635-31017654 Msa1100710:intron 30.0%
TAACAATAGGGGAAAACATA+AGG + chr7_3:31017646-31017665 Msa1100710:intron 30.0%
AACAATAGGGGAAAACATAA+GGG + chr7_3:31017647-31017666 Msa1100710:intron 30.0%
AAATCACTCAAAAAAAGTGG+GGG + chr7_3:31017674-31017693 Msa1100710:intron 30.0%
AGCATATGCATTTCATTACA+TGG + chr7_3:31017840-31017859 Msa1100710:intron 30.0%
GCATATGCATTTCATTACAT+GGG + chr7_3:31017841-31017860 Msa1100710:intron 30.0%
CATATGCATTTCATTACATG+GGG + chr7_3:31017842-31017861 Msa1100710:intron 30.0%
! TGATAATACCTTGTTATCCA+TGG - chr7_3:31018007-31018026 None:intergenic 30.0%
ACAAGTATGCCAATTGTTAT+AGG - chr7_3:31018082-31018101 None:intergenic 30.0%
GAAAATGTGACACTTATTGT+AGG + chr7_3:31018285-31018304 Msa1100710:intron 30.0%
AAACAGCAACAATTAGTTGA+TGG - chr7_3:31018423-31018442 None:intergenic 30.0%
CTTTGCAAAACTCAAAATGT+TGG + chr7_3:31018468-31018487 Msa1100710:intron 30.0%
TATCATGTATGCTTCGTAAT+TGG + chr7_3:31018699-31018718 Msa1100710:three_prime_UTR 30.0%
! GAAGCATAGCTTTCTATTTT+AGG + chr7_3:31018747-31018766 Msa1100710:three_prime_UTR 30.0%
ATCATGTTGAATTGTCTGAA+TGG + chr7_3:31017010-31017029 Msa1100710:intron 30.0%
! TTATTCATCATTTCAGGTAG+AGG + chr7_3:31017174-31017193 Msa1100710:intron 30.0%
GATTGTTACCCTTTATGATT+TGG + chr7_3:31017353-31017372 Msa1100710:intron 30.0%
GGGATATACCAAATCATAAA+GGG - chr7_3:31017364-31017383 None:intergenic 30.0%
TGGGATATACCAAATCATAA+AGG - chr7_3:31017365-31017384 None:intergenic 30.0%
!! AATTTTAAAGAAAGGCATGC+TGG + chr7_3:31017558-31017577 Msa1100710:intron 30.0%
GAGGACTAGAAAATAACAAT+AGG + chr7_3:31017633-31017652 Msa1100710:intron 30.0%
GGACTAGAAAATAACAATAG+GGG + chr7_3:31017635-31017654 Msa1100710:intron 30.0%
TAACAATAGGGGAAAACATA+AGG + chr7_3:31017646-31017665 Msa1100710:intron 30.0%
AACAATAGGGGAAAACATAA+GGG + chr7_3:31017647-31017666 Msa1100710:intron 30.0%
AAATCACTCAAAAAAAGTGG+GGG + chr7_3:31017674-31017693 Msa1100710:intron 30.0%
AGCATATGCATTTCATTACA+TGG + chr7_3:31017840-31017859 Msa1100710:intron 30.0%
GCATATGCATTTCATTACAT+GGG + chr7_3:31017841-31017860 Msa1100710:intron 30.0%
CATATGCATTTCATTACATG+GGG + chr7_3:31017842-31017861 Msa1100710:intron 30.0%
! TGATAATACCTTGTTATCCA+TGG - chr7_3:31018007-31018026 None:intergenic 30.0%
ACAAGTATGCCAATTGTTAT+AGG - chr7_3:31018082-31018101 None:intergenic 30.0%
GAAAATGTGACACTTATTGT+AGG + chr7_3:31018285-31018304 Msa1100710:intron 30.0%
AAACAGCAACAATTAGTTGA+TGG - chr7_3:31018423-31018442 None:intergenic 30.0%
CTTTGCAAAACTCAAAATGT+TGG + chr7_3:31018468-31018487 Msa1100710:intron 30.0%
TATCATGTATGCTTCGTAAT+TGG + chr7_3:31018699-31018718 Msa1100710:three_prime_UTR 30.0%
! GAAGCATAGCTTTCTATTTT+AGG + chr7_3:31018747-31018766 Msa1100710:three_prime_UTR 30.0%
AATGGCGTTCTTTGGTAAAA+TGG + chr7_3:31016861-31016880 Msa1100710:exon 35.0%
ATGGCGTTCTTTGGTAAAAT+GGG + chr7_3:31016862-31016881 Msa1100710:CDS 35.0%
ATGACATGGATCTAATTGCT+TGG - chr7_3:31016957-31016976 None:intergenic 35.0%
ATAAAGCTTTGCAGATGACA+TGG - chr7_3:31016971-31016990 None:intergenic 35.0%
! TCATCTGCAAAGCTTTATGT+TGG + chr7_3:31016973-31016992 Msa1100710:CDS 35.0%
TTCATTCACTCTCACCTATA+TGG + chr7_3:31017508-31017527 Msa1100710:intron 35.0%
TCATTCACTCTCACCTATAT+GGG + chr7_3:31017509-31017528 Msa1100710:intron 35.0%
!!! CACCTATATGGGTTGATTTT+TGG + chr7_3:31017520-31017539 Msa1100710:intron 35.0%
TGCCAAAAATCAACCCATAT+AGG - chr7_3:31017525-31017544 None:intergenic 35.0%
GATGCCTTCTATCGAAAATT+TGG + chr7_3:31017611-31017630 Msa1100710:intron 35.0%
! TCCTCCAAATTTTCGATAGA+AGG - chr7_3:31017618-31017637 None:intergenic 35.0%
ACAATAGGGGAAAACATAAG+GGG + chr7_3:31017648-31017667 Msa1100710:intron 35.0%
! ATTGCACTTTTGTTCTCTCA+AGG - chr7_3:31017721-31017740 None:intergenic 35.0%
TCAAGGTCACACAAAATTGA+TGG + chr7_3:31017809-31017828 Msa1100710:intron 35.0%
TCTCTTCGTCCTATAACAAT+TGG + chr7_3:31018070-31018089 Msa1100710:intron 35.0%
ATGTGACACTTATTGTAGGA+TGG + chr7_3:31018289-31018308 Msa1100710:intron 35.0%
ATGTTGTAACAGGAACTTCA+TGG + chr7_3:31018517-31018536 Msa1100710:intron 35.0%
CTATGCTTCTACTCAAACAA+TGG - chr7_3:31018736-31018755 None:intergenic 35.0%
AATGGCGTTCTTTGGTAAAA+TGG + chr7_3:31016861-31016880 Msa1100710:exon 35.0%
ATGGCGTTCTTTGGTAAAAT+GGG + chr7_3:31016862-31016881 Msa1100710:CDS 35.0%
ATGACATGGATCTAATTGCT+TGG - chr7_3:31016957-31016976 None:intergenic 35.0%
ATAAAGCTTTGCAGATGACA+TGG - chr7_3:31016971-31016990 None:intergenic 35.0%
! TCATCTGCAAAGCTTTATGT+TGG + chr7_3:31016973-31016992 Msa1100710:CDS 35.0%
TTCATTCACTCTCACCTATA+TGG + chr7_3:31017508-31017527 Msa1100710:intron 35.0%
TCATTCACTCTCACCTATAT+GGG + chr7_3:31017509-31017528 Msa1100710:intron 35.0%
!!! CACCTATATGGGTTGATTTT+TGG + chr7_3:31017520-31017539 Msa1100710:intron 35.0%
TGCCAAAAATCAACCCATAT+AGG - chr7_3:31017525-31017544 None:intergenic 35.0%
GATGCCTTCTATCGAAAATT+TGG + chr7_3:31017611-31017630 Msa1100710:intron 35.0%
! TCCTCCAAATTTTCGATAGA+AGG - chr7_3:31017618-31017637 None:intergenic 35.0%
ACAATAGGGGAAAACATAAG+GGG + chr7_3:31017648-31017667 Msa1100710:intron 35.0%
! ATTGCACTTTTGTTCTCTCA+AGG - chr7_3:31017721-31017740 None:intergenic 35.0%
TCAAGGTCACACAAAATTGA+TGG + chr7_3:31017809-31017828 Msa1100710:intron 35.0%
TCTCTTCGTCCTATAACAAT+TGG + chr7_3:31018070-31018089 Msa1100710:intron 35.0%
ATGTGACACTTATTGTAGGA+TGG + chr7_3:31018289-31018308 Msa1100710:intron 35.0%
ATGTTGTAACAGGAACTTCA+TGG + chr7_3:31018517-31018536 Msa1100710:intron 35.0%
CTATGCTTCTACTCAAACAA+TGG - chr7_3:31018736-31018755 None:intergenic 35.0%
CTAATTGCTTGGAATGCCAA+AGG - chr7_3:31016946-31016965 None:intergenic 40.0%
! TCTGCAAAGCTTTATGTTGG+AGG + chr7_3:31016976-31016995 Msa1100710:CDS 40.0%
! CTGATTTTCAATCGCAATGC+AGG + chr7_3:31017050-31017069 Msa1100710:intron 40.0%
CATAGGGAGCAAAACTTTCT+CGG - chr7_3:31017106-31017125 None:intergenic 40.0%
CCATCAACAACTTCTCCATA+GGG - chr7_3:31017122-31017141 None:intergenic 40.0%
ACCATCAACAACTTCTCCAT+AGG - chr7_3:31017123-31017142 None:intergenic 40.0%
ACAAAATCGCACAATCGCAT+GGG - chr7_3:31017314-31017333 None:intergenic 40.0%
TGTCAGCGGAAATTTGGTAT+GGG - chr7_3:31017384-31017403 None:intergenic 40.0%
GTCACACTAGCTATAAGAGT+TGG - chr7_3:31017422-31017441 None:intergenic 40.0%
GCCTTCTATCGAAAATTTGG+AGG + chr7_3:31017614-31017633 Msa1100710:intron 40.0%
! CTTTTGTTCTCTCAAGGATC+AGG - chr7_3:31017715-31017734 None:intergenic 40.0%
AGTTACGAAGCCAAATCCTT+TGG - chr7_3:31017947-31017966 None:intergenic 40.0%
TGTAACAGGAACTTCATGGT+CGG + chr7_3:31018521-31018540 Msa1100710:intron 40.0%
GAGTGAACTATGCTCAAGAA+AGG + chr7_3:31018551-31018570 Msa1100710:CDS 40.0%
CTAATTGCTTGGAATGCCAA+AGG - chr7_3:31016946-31016965 None:intergenic 40.0%
! TCTGCAAAGCTTTATGTTGG+AGG + chr7_3:31016976-31016995 Msa1100710:CDS 40.0%
! CTGATTTTCAATCGCAATGC+AGG + chr7_3:31017050-31017069 Msa1100710:intron 40.0%
CATAGGGAGCAAAACTTTCT+CGG - chr7_3:31017106-31017125 None:intergenic 40.0%
CCATCAACAACTTCTCCATA+GGG - chr7_3:31017122-31017141 None:intergenic 40.0%
ACCATCAACAACTTCTCCAT+AGG - chr7_3:31017123-31017142 None:intergenic 40.0%
ACAAAATCGCACAATCGCAT+GGG - chr7_3:31017314-31017333 None:intergenic 40.0%
TGTCAGCGGAAATTTGGTAT+GGG - chr7_3:31017384-31017403 None:intergenic 40.0%
GTCACACTAGCTATAAGAGT+TGG - chr7_3:31017422-31017441 None:intergenic 40.0%
GCCTTCTATCGAAAATTTGG+AGG + chr7_3:31017614-31017633 Msa1100710:intron 40.0%
! CTTTTGTTCTCTCAAGGATC+AGG - chr7_3:31017715-31017734 None:intergenic 40.0%
AGTTACGAAGCCAAATCCTT+TGG - chr7_3:31017947-31017966 None:intergenic 40.0%
TGTAACAGGAACTTCATGGT+CGG + chr7_3:31018521-31018540 Msa1100710:intron 40.0%
GAGTGAACTATGCTCAAGAA+AGG + chr7_3:31018551-31018570 Msa1100710:CDS 40.0%
GTTTGAGCAATGGCGTTCTT+TGG + chr7_3:31016853-31016872 Msa1100710:exon 45.0%
! CGAGAAAGTTTTGCTCCCTA+TGG + chr7_3:31017104-31017123 Msa1100710:CDS 45.0%
CCCTATGGAGAAGTTGTTGA+TGG + chr7_3:31017119-31017138 Msa1100710:CDS 45.0%
CAAAATCGCACAATCGCATG+GGG - chr7_3:31017313-31017332 None:intergenic 45.0%
GACAAAATCGCACAATCGCA+TGG - chr7_3:31017315-31017334 None:intergenic 45.0%
CTGTCAGCGGAAATTTGGTA+TGG - chr7_3:31017385-31017404 None:intergenic 45.0%
CATACCAAATTTCCGCTGAC+AGG + chr7_3:31017383-31017402 Msa1100710:intron 45.0%
ATGTCCTGTCAGCGGAAATT+TGG - chr7_3:31017390-31017409 None:intergenic 45.0%
TGCAAATGATGTCCTGTCAG+CGG - chr7_3:31017398-31017417 None:intergenic 45.0%
GTTATCATCGACCGTGAACA+AGG + chr7_3:31017916-31017935 Msa1100710:CDS 45.0%
! CGTAACTTTTGCAACAAGCG+AGG + chr7_3:31017960-31017979 Msa1100710:CDS 45.0%
! CTTGTTATCCATGGCCTGAA+GGG - chr7_3:31017998-31018017 None:intergenic 45.0%
GTTTGAGCAATGGCGTTCTT+TGG + chr7_3:31016853-31016872 Msa1100710:exon 45.0%
! CGAGAAAGTTTTGCTCCCTA+TGG + chr7_3:31017104-31017123 Msa1100710:CDS 45.0%
CCCTATGGAGAAGTTGTTGA+TGG + chr7_3:31017119-31017138 Msa1100710:CDS 45.0%
CAAAATCGCACAATCGCATG+GGG - chr7_3:31017313-31017332 None:intergenic 45.0%
GACAAAATCGCACAATCGCA+TGG - chr7_3:31017315-31017334 None:intergenic 45.0%
CTGTCAGCGGAAATTTGGTA+TGG - chr7_3:31017385-31017404 None:intergenic 45.0%
CATACCAAATTTCCGCTGAC+AGG + chr7_3:31017383-31017402 Msa1100710:intron 45.0%
ATGTCCTGTCAGCGGAAATT+TGG - chr7_3:31017390-31017409 None:intergenic 45.0%
TGCAAATGATGTCCTGTCAG+CGG - chr7_3:31017398-31017417 None:intergenic 45.0%
GTTATCATCGACCGTGAACA+AGG + chr7_3:31017916-31017935 Msa1100710:CDS 45.0%
! CGTAACTTTTGCAACAAGCG+AGG + chr7_3:31017960-31017979 Msa1100710:CDS 45.0%
! CTTGTTATCCATGGCCTGAA+GGG - chr7_3:31017998-31018017 None:intergenic 45.0%
!!! TTATATTTAATTTTAAAGAA+AGG + chr7_3:31017550-31017569 Msa1100710:intron 5.0%
!!! TTATATTTAATTTTAAAGAA+AGG + chr7_3:31017550-31017569 Msa1100710:intron 5.0%
! GGCATGCTGGCTATGAGAAT+TGG + chr7_3:31017571-31017590 Msa1100710:intron 50.0%
! CTTTGGACCTGCCTTGTTCA+CGG - chr7_3:31017930-31017949 None:intergenic 50.0%
CAAGGCAGGTCCAAAGGATT+TGG + chr7_3:31017934-31017953 Msa1100710:CDS 50.0%
! CCTTGTTATCCATGGCCTGA+AGG - chr7_3:31017999-31018018 None:intergenic 50.0%
CCTTCAGGCCATGGATAACA+AGG + chr7_3:31017996-31018015 Msa1100710:CDS 50.0%
CTCAAGAAAGGCCACGTTCT+GGG + chr7_3:31018563-31018582 Msa1100710:CDS 50.0%
! GGCATGCTGGCTATGAGAAT+TGG + chr7_3:31017571-31017590 Msa1100710:intron 50.0%
! CTTTGGACCTGCCTTGTTCA+CGG - chr7_3:31017930-31017949 None:intergenic 50.0%
CAAGGCAGGTCCAAAGGATT+TGG + chr7_3:31017934-31017953 Msa1100710:CDS 50.0%
! CCTTGTTATCCATGGCCTGA+AGG - chr7_3:31017999-31018018 None:intergenic 50.0%
CCTTCAGGCCATGGATAACA+AGG + chr7_3:31017996-31018015 Msa1100710:CDS 50.0%
CTCAAGAAAGGCCACGTTCT+GGG + chr7_3:31018563-31018582 Msa1100710:CDS 50.0%
TCATCGACCGTGAACAAGGC+AGG + chr7_3:31017920-31017939 Msa1100710:CDS 55.0%
CGTGAACAAGGCAGGTCCAA+AGG + chr7_3:31017928-31017947 Msa1100710:CDS 55.0%
!! GGAAGCATCTTCTGCCCTTC+AGG + chr7_3:31017981-31018000 Msa1100710:CDS 55.0%
ATCTTCTGCCCTTCAGGCCA+TGG + chr7_3:31017987-31018006 Msa1100710:CDS 55.0%
GCTCAAGAAAGGCCACGTTC+TGG + chr7_3:31018562-31018581 Msa1100710:CDS 55.0%
!! TACAGTGGTGGTGGCTATGG+CGG + chr7_3:31018586-31018605 Msa1100710:CDS 55.0%
!! GATGGTGGTGGCTATAGTGG+CGG + chr7_3:31018610-31018629 Msa1100710:CDS 55.0%
TCATCGACCGTGAACAAGGC+AGG + chr7_3:31017920-31017939 Msa1100710:CDS 55.0%
CGTGAACAAGGCAGGTCCAA+AGG + chr7_3:31017928-31017947 Msa1100710:CDS 55.0%
!! GGAAGCATCTTCTGCCCTTC+AGG + chr7_3:31017981-31018000 Msa1100710:CDS 55.0%
ATCTTCTGCCCTTCAGGCCA+TGG + chr7_3:31017987-31018006 Msa1100710:CDS 55.0%
GCTCAAGAAAGGCCACGTTC+TGG + chr7_3:31018562-31018581 Msa1100710:CDS 55.0%
!! TACAGTGGTGGTGGCTATGG+CGG + chr7_3:31018586-31018605 Msa1100710:CDS 55.0%
!! GATGGTGGTGGCTATAGTGG+CGG + chr7_3:31018610-31018629 Msa1100710:CDS 55.0%
! AGGCCACGTTCTGGGTACAG+TGG + chr7_3:31018571-31018590 Msa1100710:CDS 60.0%
CCACCACTGTACCCAGAACG+TGG - chr7_3:31018577-31018596 None:intergenic 60.0%
! CCACGTTCTGGGTACAGTGG+TGG + chr7_3:31018574-31018593 Msa1100710:CDS 60.0%
! CGTTCTGGGTACAGTGGTGG+TGG + chr7_3:31018577-31018596 Msa1100710:CDS 60.0%
!! GGGTACAGTGGTGGTGGCTA+TGG + chr7_3:31018583-31018602 Msa1100710:CDS 60.0%
!! GGCGATGGTGGTGGCTATAG+TGG + chr7_3:31018607-31018626 Msa1100710:CDS 60.0%
! GGTGGTGGCTATAGTGGTGG+CGG + chr7_3:31018634-31018653 Msa1100710:CDS 60.0%
! AGGCCACGTTCTGGGTACAG+TGG + chr7_3:31018571-31018590 Msa1100710:CDS 60.0%
CCACCACTGTACCCAGAACG+TGG - chr7_3:31018577-31018596 None:intergenic 60.0%
! CCACGTTCTGGGTACAGTGG+TGG + chr7_3:31018574-31018593 Msa1100710:CDS 60.0%
! CGTTCTGGGTACAGTGGTGG+TGG + chr7_3:31018577-31018596 Msa1100710:CDS 60.0%
!! GGGTACAGTGGTGGTGGCTA+TGG + chr7_3:31018583-31018602 Msa1100710:CDS 60.0%
!! GGCGATGGTGGTGGCTATAG+TGG + chr7_3:31018607-31018626 Msa1100710:CDS 60.0%
! GGTGGTGGCTATAGTGGTGG+CGG + chr7_3:31018634-31018653 Msa1100710:CDS 60.0%
! GGTGGTGGCTATAGTGGCGG+CGG + chr7_3:31018613-31018632 Msa1100710:CDS 65.0%
! GGCGGTGGTGGCTATAGTGG+TGG + chr7_3:31018631-31018650 Msa1100710:CDS 65.0%
!! GGTGGCTATAGTGGTGGCGG+CGG + chr7_3:31018637-31018656 Msa1100710:CDS 65.0%
!! TATAGTGGTGGCGGCGGTGG+TGG + chr7_3:31018643-31018662 Msa1100710:CDS 65.0%
! GGTGGTGGCTATGGTGGAGG+CGG + chr7_3:31018658-31018677 Msa1100710:CDS 65.0%
! GGTGGAGGCGGCTACTGACT+TGG + chr7_3:31018670-31018689 Msa1100710:exon 65.0%
! GGTGGTGGCTATAGTGGCGG+CGG + chr7_3:31018613-31018632 Msa1100710:CDS 65.0%
! GGCGGTGGTGGCTATAGTGG+TGG + chr7_3:31018631-31018650 Msa1100710:CDS 65.0%
!! GGTGGCTATAGTGGTGGCGG+CGG + chr7_3:31018637-31018656 Msa1100710:CDS 65.0%
!! TATAGTGGTGGCGGCGGTGG+TGG + chr7_3:31018643-31018662 Msa1100710:CDS 65.0%
! GGTGGTGGCTATGGTGGAGG+CGG + chr7_3:31018658-31018677 Msa1100710:CDS 65.0%
! GGTGGAGGCGGCTACTGACT+TGG + chr7_3:31018670-31018689 Msa1100710:exon 65.0%
! GGTGGTGGCTATGGCGGCGA+TGG + chr7_3:31018592-31018611 Msa1100710:CDS 70.0%
GGTGGCTATGGCGGCGATGG+TGG + chr7_3:31018595-31018614 Msa1100710:CDS 70.0%
! GGCTATGGCGGCGATGGTGG+TGG + chr7_3:31018598-31018617 Msa1100710:CDS 70.0%
GGTGGCTATAGTGGCGGCGG+TGG + chr7_3:31018616-31018635 Msa1100710:CDS 70.0%
GGCTATAGTGGCGGCGGTGG+TGG + chr7_3:31018619-31018638 Msa1100710:CDS 70.0%
! GGCGGCGGTGGTGGCTATAG+TGG + chr7_3:31018628-31018647 Msa1100710:CDS 70.0%
!! GGCTATAGTGGTGGCGGCGG+TGG + chr7_3:31018640-31018659 Msa1100710:CDS 70.0%
! GGCGGTGGTGGCTATGGTGG+AGG + chr7_3:31018655-31018674 Msa1100710:CDS 70.0%
! GGTGGTGGCTATGGCGGCGA+TGG + chr7_3:31018592-31018611 Msa1100710:CDS 70.0%
GGTGGCTATGGCGGCGATGG+TGG + chr7_3:31018595-31018614 Msa1100710:CDS 70.0%
! GGCTATGGCGGCGATGGTGG+TGG + chr7_3:31018598-31018617 Msa1100710:CDS 70.0%
GGTGGCTATAGTGGCGGCGG+TGG + chr7_3:31018616-31018635 Msa1100710:CDS 70.0%
GGCTATAGTGGCGGCGGTGG+TGG + chr7_3:31018619-31018638 Msa1100710:CDS 70.0%
! GGCGGCGGTGGTGGCTATAG+TGG + chr7_3:31018628-31018647 Msa1100710:CDS 70.0%
!! GGCTATAGTGGTGGCGGCGG+TGG + chr7_3:31018640-31018659 Msa1100710:CDS 70.0%
! GGCGGTGGTGGCTATGGTGG+AGG + chr7_3:31018655-31018674 Msa1100710:CDS 70.0%
! GGTGGCGGCGGTGGTGGCTA+TGG + chr7_3:31018649-31018668 Msa1100710:CDS 75.0%
! GGCGGCGGTGGTGGCTATGG+TGG + chr7_3:31018652-31018671 Msa1100710:CDS 75.0%
! GGTGGCGGCGGTGGTGGCTA+TGG + chr7_3:31018649-31018668 Msa1100710:CDS 75.0%
! GGCGGCGGTGGTGGCTATGG+TGG + chr7_3:31018652-31018671 Msa1100710:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 31016846 31018880 31016846 ID=Msa1100710;Name=Msa1100710
chr7_3 mRNA 31016846 31018880 31016846 ID=Msa1100710-mRNA-1;Parent=Msa1100710;Name=Msa1100710-mRNA-1;_AED=0.10;_eAED=0.10;_QI=16|1|1|1|1|1|4|193|156
chr7_3 exon 31016846 31016997 31016846 ID=Msa1100710-mRNA-1:exon:6575;Parent=Msa1100710-mRNA-1
chr7_3 exon 31017072 31017140 31017072 ID=Msa1100710-mRNA-1:exon:6576;Parent=Msa1100710-mRNA-1
chr7_3 exon 31017911 31018017 31017911 ID=Msa1100710-mRNA-1:exon:6577;Parent=Msa1100710-mRNA-1
chr7_3 exon 31018529 31018880 31018529 ID=Msa1100710-mRNA-1:exon:6578;Parent=Msa1100710-mRNA-1
chr7_3 five_prime_UTR 31016846 31016861 31016846 ID=Msa1100710-mRNA-1:five_prime_utr;Parent=Msa1100710-mRNA-1
chr7_3 CDS 31016862 31016997 31016862 ID=Msa1100710-mRNA-1:cds;Parent=Msa1100710-mRNA-1
chr7_3 CDS 31017072 31017140 31017072 ID=Msa1100710-mRNA-1:cds;Parent=Msa1100710-mRNA-1
chr7_3 CDS 31017911 31018017 31017911 ID=Msa1100710-mRNA-1:cds;Parent=Msa1100710-mRNA-1
chr7_3 CDS 31018529 31018687 31018529 ID=Msa1100710-mRNA-1:cds;Parent=Msa1100710-mRNA-1
chr7_3 three_prime_UTR 31018688 31018880 31018688 ID=Msa1100710-mRNA-1:three_prime_utr;Parent=Msa1100710-mRNA-1
Gene Sequence

>Msa1100710

ATGGCGTTCTTTGGTAAAATGGGAAAGTTACTCAAGAATTCTGCAATCAACCACATCAATCATGATTTATCTATATCTACTCCTTTGGCATTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTATGTTGGAGGCATTTCGTATAGCACTGATGATATGAGTCTCCGAGAAAGTTTTGCTCCCTATGGAGAAGTTGTTGATGCAAGAGTTATCATCGACCGTGAACAAGGCAGGTCCAAAGGATTTGGCTTCGTAACTTTTGCAACAAGCGAGGAAGCATCTTCTGCCCTTCAGGCCATGGATAACAAGGAACTTCATGGTCGGACACTACGAGTGAACTATGCTCAAGAAAGGCCACGTTCTGGGTACAGTGGTGGTGGCTATGGCGGCGATGGTGGTGGCTATAGTGGCGGCGGTGGTGGCTATAGTGGTGGCGGCGGTGGTGGCTATGGTGGAGGCGGCTACTGA
Protein sequence

>Msa1100710

MAFFGKMGKLLKNSAINHINHDLSISTPLAFQAIRSMSSAKLYVGGISYSTDDMSLRESFAPYGEVVDARVIIDREQGRSKGFGFVTFATSEEASSALQAMDNKELHGRTLRVNYAQERPRSGYSGGGYGGDGGGYSGGGGGYSGGGGGGYGGGGY*