Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181490 | sp|Q9M352|RL362_ARATH | 80.180 | 111 | 22 | 0 | 1 | 111 | 1 | 111 | 1.90e-57 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181490 | G7IAL7 | 100.000 | 111 | 0 | 0 | 1 | 111 | 1 | 111 | 2.94e-71 | 217 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0181490 | 0.891027 | 5.777489e-74 | -8.615850e-47 |
| Msa0002790 | Msa0181490 | 0.910774 | 1.285796e-82 | -8.615850e-47 |
| Msa0003780 | Msa0181490 | 0.822776 | 1.977130e-53 | -8.615850e-47 |
| Msa0022970 | Msa0181490 | 0.871642 | 5.847676e-67 | -8.615850e-47 |
| Msa0032780 | Msa0181490 | 0.826006 | 3.437206e-54 | -8.615850e-47 |
| Msa0032810 | Msa0181490 | 0.837846 | 4.084139e-57 | -8.615850e-47 |
| Msa0038090 | Msa0181490 | 0.833904 | 4.078883e-56 | -8.615850e-47 |
| Msa0040690 | Msa0181490 | 0.804066 | 2.581569e-49 | -8.615850e-47 |
| Msa0045730 | Msa0181490 | 0.886684 | 2.760124e-72 | -8.615850e-47 |
| Msa0048180 | Msa0181490 | 0.826168 | 3.144691e-54 | -8.615850e-47 |
| Msa0074030 | Msa0181490 | 0.843133 | 1.689489e-58 | -8.615850e-47 |
| Msa0086750 | Msa0181490 | 0.879246 | 1.457542e-69 | -8.615850e-47 |
| Msa0116130 | Msa0181490 | 0.891913 | 2.571226e-74 | -8.615850e-47 |
| Msa0116670 | Msa0181490 | 0.896295 | 4.230842e-76 | -8.615850e-47 |
| Msa0118710 | Msa0181490 | 0.864788 | 9.446240e-65 | -8.615850e-47 |
| Msa0128860 | Msa0181490 | 0.818060 | 2.386497e-52 | -8.615850e-47 |
| Msa0133540 | Msa0181490 | 0.995691 | 7.199435e-219 | -8.615850e-47 |
| Msa0146340 | Msa0181490 | 0.862600 | 4.519675e-64 | -8.615850e-47 |
| Msa0163760 | Msa0181490 | 0.843228 | 1.594325e-58 | -8.615850e-47 |
| Msa0167480 | Msa0181490 | 0.816911 | 4.330967e-52 | -8.615850e-47 |
| Msa0172900 | Msa0181490 | 0.823837 | 1.116934e-53 | -8.615850e-47 |
| Msa0172930 | Msa0181490 | 0.822163 | 2.743235e-53 | -8.615850e-47 |
| Msa0173530 | Msa0181490 | 0.894259 | 2.918958e-75 | -8.615850e-47 |
| Msa0174730 | Msa0181490 | 0.816369 | 5.731160e-52 | -8.615850e-47 |
| Msa0181490 | Msa0187930 | 0.810808 | 9.589673e-51 | -8.615850e-47 |
| Msa0181490 | Msa0192750 | 0.802614 | 5.160120e-49 | -8.615850e-47 |
| Msa0181490 | Msa0194540 | 0.804009 | 2.653918e-49 | -8.615850e-47 |
| Msa0181490 | Msa0210360 | 0.848926 | 4.489838e-60 | -8.615850e-47 |
| Msa0181490 | Msa0218830 | 0.849127 | 3.946685e-60 | -8.615850e-47 |
| Msa0181490 | Msa0219120 | 0.854996 | 8.481071e-62 | -8.615850e-47 |
| Msa0181490 | Msa0221030 | 0.830777 | 2.426107e-55 | -8.615850e-47 |
| Msa0181490 | Msa0222730 | 0.838045 | 3.630282e-57 | -8.615850e-47 |
| Msa0181490 | Msa0224560 | 0.808848 | 2.530887e-50 | -8.615850e-47 |
| Msa0181490 | Msa0229150 | 0.801515 | 8.684232e-49 | -8.615850e-47 |
| Msa0181490 | Msa0230490 | 0.873804 | 1.107137e-67 | -8.615850e-47 |
| Msa0181490 | Msa0230520 | 0.852276 | 5.133480e-61 | -8.615850e-47 |
| Msa0181490 | Msa0231100 | 0.826036 | 3.380821e-54 | -8.615850e-47 |
| Msa0181490 | Msa0244780 | 0.813214 | 2.866950e-51 | -8.615850e-47 |
| Msa0181490 | Msa0257450 | 0.806633 | 7.482105e-50 | -8.615850e-47 |
| Msa0181490 | Msa0258850 | 0.852262 | 5.181202e-61 | -8.615850e-47 |
| Msa0181490 | Msa0262480 | 0.811352 | 7.307622e-51 | -8.615850e-47 |
| Msa0181490 | Msa0264010 | 0.846550 | 2.024012e-59 | -8.615850e-47 |
| Msa0181490 | Msa0269180 | 0.823019 | 1.735408e-53 | -8.615850e-47 |
| Msa0181490 | Msa0289580 | 0.869287 | 3.466221e-66 | -8.615850e-47 |
| Msa0181490 | Msa0289610 | 0.876519 | 1.309154e-68 | -8.615850e-47 |
| Msa0181490 | Msa0297830 | 0.834603 | 2.724256e-56 | -8.615850e-47 |
| Msa0181490 | Msa0298200 | 0.846980 | 1.544521e-59 | -8.615850e-47 |
| Msa0181490 | Msa0298990 | 0.801632 | 8.214271e-49 | -8.615850e-47 |
| Msa0181490 | Msa0300350 | 0.805099 | 1.571941e-49 | -8.615850e-47 |
| Msa0181490 | Msa0301220 | 0.812093 | 5.042673e-51 | -8.615850e-47 |
| Msa0181490 | Msa0306690 | 0.992422 | 3.410140e-193 | -8.615850e-47 |
| Msa0181490 | Msa0317910 | 0.806595 | 7.620978e-50 | -8.615850e-47 |
| Msa0181490 | Msa0327300 | 0.887727 | 1.106676e-72 | -8.615850e-47 |
| Msa0181490 | Msa0327330 | 0.874232 | 7.932548e-68 | -8.615850e-47 |
| Msa0181490 | Msa0335840 | 0.835475 | 1.642606e-56 | -8.615850e-47 |
| Msa0181490 | Msa0336010 | 0.831058 | 2.070207e-55 | -8.615850e-47 |
| Msa0181490 | Msa0337670 | 0.817811 | 2.717401e-52 | -8.615850e-47 |
| Msa0181490 | Msa0348830 | 0.888557 | 5.312584e-73 | -8.615850e-47 |
| Msa0181490 | Msa0443390 | 0.856989 | 2.215496e-62 | -8.615850e-47 |
| Msa0181490 | Msa0481850 | 0.866224 | 3.332951e-65 | -8.615850e-47 |
| Msa0181490 | Msa0483110 | 0.859126 | 5.131087e-63 | -8.615850e-47 |
| Msa0181490 | Msa0526540 | 0.841208 | 5.463356e-58 | -8.615850e-47 |
| Msa0181490 | Msa0527150 | 0.809753 | 1.618865e-50 | -8.615850e-47 |
| Msa0181490 | Msa0534750 | 0.837579 | 4.782302e-57 | -8.615850e-47 |
| Msa0181490 | Msa0571920 | 0.809798 | 1.583422e-50 | -8.615850e-47 |
| Msa0181490 | Msa0576940 | 0.843039 | 1.790264e-58 | -8.615850e-47 |
| Msa0181490 | Msa0586420 | 0.814381 | 1.585755e-51 | -8.615850e-47 |
| Msa0181490 | Msa0588630 | -0.815398 | 9.437765e-52 | -8.615850e-47 |
| Msa0181490 | Msa0590940 | 0.800175 | 1.630616e-48 | -8.615850e-47 |
| Msa0181490 | Msa0596370 | 0.809962 | 1.460039e-50 | -8.615850e-47 |
| Msa0181490 | Msa0615580 | 0.839473 | 1.551343e-57 | -8.615850e-47 |
| Msa0181490 | Msa0617540 | 0.819530 | 1.106679e-52 | -8.615850e-47 |
| Msa0181490 | Msa0620890 | 0.800235 | 1.585086e-48 | -8.615850e-47 |
| Msa0181490 | Msa0622750 | 0.880687 | 4.471907e-70 | -8.615850e-47 |
| Msa0181490 | Msa0623200 | 0.886751 | 2.603991e-72 | -8.615850e-47 |
| Msa0181490 | Msa0666230 | 0.850209 | 1.968735e-60 | -8.615850e-47 |
| Msa0181490 | Msa0683660 | 0.804723 | 1.883360e-49 | -8.615850e-47 |
| Msa0181490 | Msa0684160 | 0.809901 | 1.504436e-50 | -8.615850e-47 |
| Msa0181490 | Msa0698780 | 0.824725 | 6.907747e-54 | -8.615850e-47 |
| Msa0181490 | Msa0705800 | 0.828429 | 9.034046e-55 | -8.615850e-47 |
| Msa0181490 | Msa0712610 | 0.874635 | 5.789701e-68 | -8.615850e-47 |
| Msa0181490 | Msa0717380 | 0.811779 | 5.901674e-51 | -8.615850e-47 |
| Msa0181490 | Msa0729200 | 0.865457 | 5.823331e-65 | -8.615850e-47 |
| Msa0181490 | Msa0738100 | 0.824124 | 9.564545e-54 | -8.615850e-47 |
| Msa0181490 | Msa0766080 | 0.805915 | 1.059900e-49 | -8.615850e-47 |
| Msa0181490 | Msa0769590 | 0.867568 | 1.243339e-65 | -8.615850e-47 |
| Msa0181490 | Msa0780490 | 0.862838 | 3.817220e-64 | -8.615850e-47 |
| Msa0181490 | Msa0781080 | 0.869309 | 3.411127e-66 | -8.615850e-47 |
| Msa0181490 | Msa0785130 | 0.852780 | 3.688566e-61 | -8.615850e-47 |
| Msa0181490 | Msa0806880 | 0.878053 | 3.832209e-69 | -8.615850e-47 |
| Msa0181490 | Msa0817540 | 0.851164 | 1.060887e-60 | -8.615850e-47 |
| Msa0181490 | Msa0827380 | 0.876393 | 1.447035e-68 | -8.615850e-47 |
| Msa0181490 | Msa0844220 | -0.800607 | 1.331598e-48 | -8.615850e-47 |
| Msa0181490 | Msa0867060 | 0.803643 | 3.160777e-49 | -8.615850e-47 |
| Msa0181490 | Msa0876170 | 0.881180 | 2.972611e-70 | -8.615850e-47 |
| Msa0181490 | Msa0888810 | 0.805879 | 1.078804e-49 | -8.615850e-47 |
| Msa0181490 | Msa0945480 | 0.859055 | 5.386905e-63 | -8.615850e-47 |
| Msa0181490 | Msa0953310 | 0.803136 | 4.026719e-49 | -8.615850e-47 |
| Msa0181490 | Msa1010310 | 0.839209 | 1.817007e-57 | -8.615850e-47 |
| Msa0181490 | Msa1019240 | 0.856918 | 2.324117e-62 | -8.615850e-47 |
| Msa0181490 | Msa1019260 | 0.849171 | 3.836825e-60 | -8.615850e-47 |
| Msa0181490 | Msa1021120 | 0.817048 | 4.036794e-52 | -8.615850e-47 |
| Msa0181490 | Msa1037290 | 0.809115 | 2.218816e-50 | -8.615850e-47 |
| Msa0181490 | Msa1039470 | 0.828781 | 7.429745e-55 | -8.615850e-47 |
| Msa0181490 | Msa1039520 | 0.813079 | 3.069041e-51 | -8.615850e-47 |
| Msa0181490 | Msa1040160 | 0.807256 | 5.522905e-50 | -8.615850e-47 |
| Msa0181490 | Msa1043690 | 0.826869 | 2.141062e-54 | -8.615850e-47 |
| Msa0181490 | Msa1072710 | 0.849806 | 2.552613e-60 | -8.615850e-47 |
| Msa0181490 | Msa1078870 | 0.829708 | 4.426441e-55 | -8.615850e-47 |
| Msa0181490 | Msa1078980 | 0.814355 | 1.607283e-51 | -8.615850e-47 |
| Msa0181490 | Msa1080350 | 0.879451 | 1.232852e-69 | -8.615850e-47 |
| Msa0181490 | Msa1088490 | 0.870325 | 1.589137e-66 | -8.615850e-47 |
| Msa0181490 | Msa1094380 | 0.818595 | 1.805538e-52 | -8.615850e-47 |
| Msa0181490 | Msa1096900 | 0.813587 | 2.374145e-51 | -8.615850e-47 |
| Msa0181490 | Msa1100710 | 0.807510 | 4.879741e-50 | -8.615850e-47 |
| Msa0181490 | Msa1104140 | 0.830893 | 2.272489e-55 | -8.615850e-47 |
| Msa0181490 | Msa1104210 | 0.852059 | 5.916777e-61 | -8.615850e-47 |
| Msa0181490 | Msa1125860 | 0.882546 | 9.518384e-71 | -8.615850e-47 |
| Msa0181490 | Msa1126060 | 0.880160 | 6.898386e-70 | -8.615850e-47 |
| Msa0181490 | Msa1126520 | 0.823301 | 1.491292e-53 | -8.615850e-47 |
| Msa0181490 | Msa1166860 | 0.804543 | 2.053966e-49 | -8.615850e-47 |
| Msa0181490 | Msa1166870 | 0.846150 | 2.602804e-59 | -8.615850e-47 |
| Msa0181490 | Msa1167540 | 0.849565 | 2.979570e-60 | -8.615850e-47 |
| Msa0181490 | Msa1167550 | 0.831743 | 1.404139e-55 | -8.615850e-47 |
| Msa0181490 | Msa1169180 | 0.811287 | 7.550750e-51 | -8.615850e-47 |
| Msa0181490 | Msa1186980 | 0.816357 | 5.764725e-52 | -8.615850e-47 |
| Msa0181490 | Msa1195300 | 0.827907 | 1.207322e-54 | -8.615850e-47 |
| Msa0181490 | Msa1208020 | 0.810908 | 9.122278e-51 | -8.615850e-47 |
| Msa0181490 | Msa1215820 | 0.888516 | 5.507764e-73 | -8.615850e-47 |
| Msa0181490 | Msa1260530 | 0.800494 | 1.403929e-48 | -8.615850e-47 |
| Msa0181490 | Msa1273340 | 0.824715 | 6.945623e-54 | -8.615850e-47 |
| Msa0181490 | Msa1295150 | 0.800090 | 1.696336e-48 | -8.615850e-47 |
| Msa0181490 | Msa1299590 | 0.834604 | 2.722270e-56 | -8.615850e-47 |
| Msa0181490 | Msa1305050 | 0.814235 | 1.708159e-51 | -8.615850e-47 |
| Msa0181490 | Msa1311400 | 0.803482 | 3.413713e-49 | -8.615850e-47 |
| Msa0181490 | Msa1331710 | 0.802916 | 4.469408e-49 | -8.615850e-47 |
| Msa0181490 | Msa1332250 | 0.826145 | 3.186177e-54 | -8.615850e-47 |
| Msa0181490 | Msa1338190 | 0.835526 | 1.593952e-56 | -8.615850e-47 |
| Msa0181490 | Msa1343260 | 0.813796 | 2.135413e-51 | -8.615850e-47 |
| Msa0181490 | Msa1349570 | 0.857359 | 1.722487e-62 | -8.615850e-47 |
| Msa0181490 | Msa1356790 | 0.875726 | 2.455705e-68 | -8.615850e-47 |
| Msa0181490 | Msa1362790 | 0.862198 | 6.006409e-64 | -8.615850e-47 |
| Msa0181490 | Msa1363330 | 0.839863 | 1.228766e-57 | -8.615850e-47 |
| Msa0181490 | Msa1366180 | 0.874358 | 7.189967e-68 | -8.615850e-47 |
| Msa0181490 | Msa1368920 | 0.806234 | 9.082663e-50 | -8.615850e-47 |
| Msa0181490 | Msa1369190 | 0.857234 | 1.874997e-62 | -8.615850e-47 |
| Msa0181490 | Msa1374120 | 0.801617 | 8.275905e-49 | -8.615850e-47 |
| Msa0181490 | Msa1379760 | 0.826373 | 2.811978e-54 | -8.615850e-47 |
| Msa0181490 | Msa1386600 | 0.840792 | 7.023859e-58 | -8.615850e-47 |
| Msa0181490 | Msa1387410 | 0.842087 | 3.203491e-58 | -8.615850e-47 |
| Msa0181490 | Msa1392590 | 0.806952 | 6.407531e-50 | -8.615850e-47 |
| Msa0181490 | Msa1399530 | 0.800260 | 1.566488e-48 | -8.615850e-47 |
| Msa0181490 | Msa1406080 | 0.871207 | 8.149513e-67 | -8.615850e-47 |
| Msa0181490 | Msa1407070 | 0.806992 | 6.282975e-50 | -8.615850e-47 |
| Msa0181490 | Msa1410440 | 0.800094 | 1.693338e-48 | -8.615850e-47 |
| Msa0181490 | Msa1413500 | 0.879343 | 1.346759e-69 | -8.615850e-47 |
| Msa0181490 | Msa1426120 | 0.838271 | 3.176119e-57 | -8.615850e-47 |
| Msa0181490 | Msa1426370 | 0.862325 | 5.489753e-64 | -8.615850e-47 |
| Msa0181490 | Msa1426490 | 0.890475 | 9.527045e-74 | -8.615850e-47 |
| Msa0181490 | Msa1427560 | 0.852121 | 5.682602e-61 | -8.615850e-47 |
| Msa0181490 | Msa1433310 | 0.805347 | 1.394710e-49 | -8.615850e-47 |
| Msa0181490 | Msa1450280 | 0.807659 | 4.537320e-50 | -8.615850e-47 |
| Msa0181490 | Msa1455950 | 0.813292 | 2.755699e-51 | -8.615850e-47 |
| Msa0181490 | Msa1456050 | 0.807993 | 3.852260e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181490 | MtrunA17_Chr1g0203071 | 100.000 | 111 | 0 | 0 | 1 | 111 | 1 | 111 | 5.66e-75 | 217 |
| Msa0181490 | MtrunA17_Chr6g0470561 | 96.396 | 111 | 4 | 0 | 1 | 111 | 1 | 111 | 2.67e-72 | 210 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181490 | AT3G53740.4 | 80.180 | 111 | 22 | 0 | 1 | 111 | 1 | 111 | 1.94e-58 | 176 |
| Msa0181490 | AT3G53740.2 | 80.180 | 111 | 22 | 0 | 1 | 111 | 1 | 111 | 1.94e-58 | 176 |
| Msa0181490 | AT3G53740.3 | 80.180 | 111 | 22 | 0 | 1 | 111 | 1 | 111 | 1.94e-58 | 176 |
| Msa0181490 | AT2G37600.1 | 82.692 | 104 | 18 | 0 | 8 | 111 | 8 | 111 | 2.14e-56 | 171 |
| Msa0181490 | AT2G37600.2 | 82.692 | 104 | 18 | 0 | 8 | 111 | 8 | 111 | 2.14e-56 | 171 |
| Msa0181490 | AT5G02450.1 | 83.019 | 106 | 17 | 1 | 7 | 111 | 3 | 108 | 8.39e-56 | 169 |
| Msa0181490 | AT3G53740.1 | 72.072 | 111 | 22 | 1 | 1 | 111 | 1 | 102 | 3.17e-49 | 152 |
Find 62 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCGCACTCTCTCTGGTGTT+AGG | 0.277881 | 1_4:+69723660 | Msa0181490:five_prime_UTR |
| AAACCAGTACTTGGTTGTTT+AGG | 0.306770 | 1_4:-69723820 | None:intergenic |
| CTTCTTCTTTGCACGTTTGT+GGG | 0.313110 | 1_4:-69724489 | None:intergenic |
| TCTTCTTCTTTGCACGTTTG+TGG | 0.365751 | 1_4:-69724490 | None:intergenic |
| AAAGGGAATTCTAAGTGATT+AGG | 0.392156 | 1_4:+69724990 | Msa0181490:three_prime_UTR |
| TTTATTTGTGACAGGAGAAA+TGG | 0.397262 | 1_4:+69723795 | Msa0181490:intron |
| AAAAGACAAGAGGGCACTTA+AGG | 0.398330 | 1_4:+69724445 | Msa0181490:CDS |
| CCGCACTCTCTCTGGTGTTA+GGG | 0.410246 | 1_4:+69723661 | Msa0181490:five_prime_UTR |
| CCATTCCACCGCACTCTCTC+TGG | 0.423239 | 1_4:+69723653 | Msa0181490:five_prime_UTR |
| TCCACGTCCTTCAGCTCGCA+AGG | 0.427898 | 1_4:+69723891 | Msa0181490:CDS |
| TGCAGGGCTGGTGGTGGAGC+AGG | 0.430321 | 1_4:+69724660 | Msa0181490:intron |
| AGCAGGAGATAAGAAGAAAT+AGG | 0.434078 | 1_4:+69724677 | Msa0181490:CDS |
| CATCGTCACAAAGAAGGAAT+TGG | 0.434230 | 1_4:+69723867 | Msa0181490:CDS |
| CATTAAACGTTATATGGTCT+AGG | 0.435620 | 1_4:+69724944 | Msa0181490:three_prime_UTR |
| AGTAAGCTTATAATTCCCTT+TGG | 0.437738 | 1_4:-69725067 | None:intergenic |
| GAAGTGAAGAAGCTAACCTT+AGG | 0.445240 | 1_4:-69723631 | None:intergenic |
| CCAAGTACTGGTTTGTTCGT+TGG | 0.458873 | 1_4:+69723829 | Msa0181490:CDS |
| AAGGTTGCAAAGAGAAAGCT+TGG | 0.461674 | 1_4:+69724464 | Msa0181490:CDS |
| CCAACGAACAAACCAGTACT+TGG | 0.464574 | 1_4:-69723829 | None:intergenic |
| TAATCACTTAGAATTCCCTT+TGG | 0.471460 | 1_4:-69724988 | None:intergenic |
| ATGAAAACATGGTCATCATA+AGG | 0.471890 | 1_4:-69724924 | None:intergenic |
| CCAGAGAGAGTGCGGTGGAA+TGG | 0.480153 | 1_4:-69723653 | None:intergenic |
| AACCTCATTAGAGAGGTTGC+TGG | 0.487721 | 1_4:+69724377 | Msa0181490:CDS |
| ATCACTGAGTTGCTCAAGGT+TGG | 0.503868 | 1_4:+69724422 | Msa0181490:CDS |
| TCAATGTGCAGGGCTGGTGG+TGG | 0.508415 | 1_4:+69724654 | Msa0181490:intron |
| AGGAGATGTCTAATGTCCTC+AGG | 0.510350 | 1_4:+69724516 | Msa0181490:CDS |
| ACCTCATTAGAGAGGTTGCT+GGG | 0.511316 | 1_4:+69724378 | Msa0181490:CDS |
| CCCTTGCGAGCTGAAGGACG+TGG | 0.511446 | 1_4:-69723892 | None:intergenic |
| TCTGAGATCACCGTCACTAC+AGG | 0.512556 | 1_4:+69723686 | Msa0181490:five_prime_UTR |
| TTTGTTATGGCTTCACATGA+TGG | 0.517974 | 1_4:+69724711 | Msa0181490:three_prime_UTR |
| GGAATTCTAAGTGATTAGGA+AGG | 0.521373 | 1_4:+69724994 | Msa0181490:three_prime_UTR |
| CCACGTCCTTCAGCTCGCAA+GGG | 0.521414 | 1_4:+69723892 | Msa0181490:CDS |
| TTGTTATGGCTTCACATGAT+GGG | 0.522554 | 1_4:+69724712 | Msa0181490:three_prime_UTR |
| AGGCCACATCGTCACAAAGA+AGG | 0.551215 | 1_4:+69723861 | Msa0181490:CDS |
| GCTCCTAAACAACCAAGTAC+TGG | 0.551611 | 1_4:+69723817 | Msa0181490:CDS |
| CACGTCCTTCAGCTCGCAAG+GGG | 0.561496 | 1_4:+69723893 | Msa0181490:CDS |
| TGATACAGTAGTTTACCAAA+GGG | 0.574844 | 1_4:+69724973 | Msa0181490:three_prime_UTR |
| ATTCCTTCTTTGTGACGATG+TGG | 0.577252 | 1_4:-69723864 | None:intergenic |
| TTGATACAGTAGTTTACCAA+AGG | 0.579967 | 1_4:+69724972 | Msa0181490:three_prime_UTR |
| TTGTTCGTTGGATTGAACAA+AGG | 0.583526 | 1_4:+69723841 | Msa0181490:CDS |
| TCAGTGATACGCTTCTCGTA+AGG | 0.584616 | 1_4:-69724407 | None:intergenic |
| AAGTGAAGAAGCTAACCTTA+GGG | 0.585753 | 1_4:-69723630 | None:intergenic |
| TGATACAGTAGTTAACCAAA+GGG | 0.586023 | 1_4:+69725052 | Msa0181490:three_prime_UTR |
| TTGATACAGTAGTTAACCAA+AGG | 0.592386 | 1_4:+69725051 | Msa0181490:three_prime_UTR |
| ACCCAGCAACCTCTCTAATG+AGG | 0.601885 | 1_4:-69724379 | None:intergenic |
| TGTGAGGAACCTCATTAGAG+AGG | 0.602916 | 1_4:+69724370 | Msa0181490:CDS |
| TCGTTCAGAAAACAAGCAAG+AGG | 0.606732 | 1_4:+69724339 | Msa0181490:intron |
| CCCTAACACCAGAGAGAGTG+CGG | 0.614155 | 1_4:-69723661 | None:intergenic |
| ACGTGCAAAGAAGAAGAGAG+AGG | 0.618868 | 1_4:+69724496 | Msa0181490:CDS |
| GCAAGAGGGTGCACTTTGTG+AGG | 0.622900 | 1_4:+69724354 | Msa0181490:CDS |
| GAAATGAATACCTGTAGTGA+CGG | 0.626819 | 1_4:-69723696 | None:intergenic |
| CTAATGTCCTCAGGAAGATG+AGG | 0.627117 | 1_4:+69724525 | Msa0181490:CDS |
| CAAGGTTGGAAAAGACAAGA+GGG | 0.628294 | 1_4:+69724436 | Msa0181490:CDS |
| GCGTATCACTGAGTTGCTCA+AGG | 0.629950 | 1_4:+69724418 | Msa0181490:CDS |
| CGTTCAGAAAACAAGCAAGA+GGG | 0.632672 | 1_4:+69724340 | Msa0181490:intron |
| GAATTCTAAGTGATTAGGAA+GGG | 0.639972 | 1_4:+69724995 | Msa0181490:three_prime_UTR |
| AGATACTCGAAAGAACCCTA+AGG | 0.648690 | 1_4:+69723615 | Msa0181490:five_prime_UTR |
| TATAACGTTTAATGAAAACA+TGG | 0.659063 | 1_4:-69724935 | None:intergenic |
| TCAAGGTTGGAAAAGACAAG+AGG | 0.663036 | 1_4:+69724435 | Msa0181490:CDS |
| GAACAAACCTCATCTTCCTG+AGG | 0.694769 | 1_4:-69724532 | None:intergenic |
| ACGTCCTTCAGCTCGCAAGG+GGG | 0.706112 | 1_4:+69723894 | Msa0181490:CDS |
| TAACACCAGAGAGAGTGCGG+TGG | 0.731080 | 1_4:-69723658 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAATCTAACATAAAA+TGG | - | chr1_4:69723965-69723984 | None:intergenic | 10.0% |
| !!! | ATTTTATGTTAGATTTAAAT+TGG | + | chr1_4:69723964-69723983 | Msa0181490:intron | 10.0% |
| !! | AATTTAAATCTAACATAAAA+TGG | - | chr1_4:69723965-69723984 | None:intergenic | 10.0% |
| !!! | ATTTTATGTTAGATTTAAAT+TGG | + | chr1_4:69723964-69723983 | Msa0181490:intron | 10.0% |
| !!! | TAGATATCAAAAGATTTTAT+GGG | + | chr1_4:69724875-69724894 | Msa0181490:three_prime_UTR | 15.0% |
| !!! | TTTATGGGTTTATATTTTTA+AGG | + | chr1_4:69724890-69724909 | Msa0181490:three_prime_UTR | 15.0% |
| !!! | TAGATATCAAAAGATTTTAT+GGG | + | chr1_4:69724875-69724894 | Msa0181490:three_prime_UTR | 15.0% |
| !!! | TTTATGGGTTTATATTTTTA+AGG | + | chr1_4:69724890-69724909 | Msa0181490:three_prime_UTR | 15.0% |
| !!! | AAATTGGAATTATTAGCTTA+AGG | + | chr1_4:69723980-69723999 | Msa0181490:intron | 20.0% |
| !! | ACGAATAAAAACAATCTTTA+GGG | - | chr1_4:69724323-69724342 | None:intergenic | 20.0% |
| !! | AACGAATAAAAACAATCTTT+AGG | - | chr1_4:69724324-69724343 | None:intergenic | 20.0% |
| !!! | TTTGTTATTATTGTTATGCT+TGG | + | chr1_4:69724562-69724581 | Msa0181490:intron | 20.0% |
| !!! | CTAGATATCAAAAGATTTTA+TGG | + | chr1_4:69724874-69724893 | Msa0181490:three_prime_UTR | 20.0% |
| !! | TATAACGTTTAATGAAAACA+TGG | - | chr1_4:69724938-69724957 | None:intergenic | 20.0% |
| !!! | TGTTTTCATTAAACGTTATA+TGG | + | chr1_4:69724938-69724957 | Msa0181490:three_prime_UTR | 20.0% |
| !!! | AAATTGGAATTATTAGCTTA+AGG | + | chr1_4:69723980-69723999 | Msa0181490:intron | 20.0% |
| !! | ACGAATAAAAACAATCTTTA+GGG | - | chr1_4:69724323-69724342 | None:intergenic | 20.0% |
| !! | AACGAATAAAAACAATCTTT+AGG | - | chr1_4:69724324-69724343 | None:intergenic | 20.0% |
| !!! | TTTGTTATTATTGTTATGCT+TGG | + | chr1_4:69724562-69724581 | Msa0181490:intron | 20.0% |
| !!! | CTAGATATCAAAAGATTTTA+TGG | + | chr1_4:69724874-69724893 | Msa0181490:three_prime_UTR | 20.0% |
| !! | TATAACGTTTAATGAAAACA+TGG | - | chr1_4:69724938-69724957 | None:intergenic | 20.0% |
| !!! | TGTTTTCATTAAACGTTATA+TGG | + | chr1_4:69724938-69724957 | Msa0181490:three_prime_UTR | 20.0% |
| ! | TTTAACTCTGCAATAAAAAG+CGG | + | chr1_4:69723585-69723604 | Msa0181490:five_prime_UTR | 25.0% |
| ! | TTTGTTTGTTTATTTGTGAC+AGG | + | chr1_4:69723787-69723806 | Msa0181490:intron | 25.0% |
| ! | ATTAATTCATAAGCTTGTCA+AGG | + | chr1_4:69724113-69724132 | Msa0181490:intron | 25.0% |
| ! | TTAAGAAAAAACTGCTTATG+AGG | + | chr1_4:69724140-69724159 | Msa0181490:intron | 25.0% |
| ! | TTATGAGGATGATATTTATG+AGG | + | chr1_4:69724155-69724174 | Msa0181490:intron | 25.0% |
| ! | AATAGAAGGAGAAATAATGT+TGG | + | chr1_4:69724205-69724224 | Msa0181490:intron | 25.0% |
| ! | ATAGAAGGAGAAATAATGTT+GGG | + | chr1_4:69724206-69724225 | Msa0181490:intron | 25.0% |
| ! | CATTATTTCATTCATTCCTA+TGG | - | chr1_4:69724254-69724273 | None:intergenic | 25.0% |
| ! | CGAATAAAAACAATCTTTAG+GGG | - | chr1_4:69724322-69724341 | None:intergenic | 25.0% |
| ! | TTATTGTTATGCTTGGTATT+TGG | + | chr1_4:69724569-69724588 | Msa0181490:intron | 25.0% |
| ! | GTTATTATGATAAACATTCC+CGG | + | chr1_4:69724591-69724610 | Msa0181490:intron | 25.0% |
| !! | TTTAGATATTTTCAATGTGC+AGG | + | chr1_4:69724643-69724662 | Msa0181490:intron | 25.0% |
| !! | TTAGATATTTTCAATGTGCA+GGG | + | chr1_4:69724644-69724663 | Msa0181490:intron | 25.0% |
| !!! | GGTTTTGTTTACTTTTGTTA+TGG | + | chr1_4:69724698-69724717 | Msa0181490:exon | 25.0% |
| ! | TTTAACTCTGCAATAAAAAG+CGG | + | chr1_4:69723585-69723604 | Msa0181490:five_prime_UTR | 25.0% |
| ! | TTTGTTTGTTTATTTGTGAC+AGG | + | chr1_4:69723787-69723806 | Msa0181490:intron | 25.0% |
| ! | ATTAATTCATAAGCTTGTCA+AGG | + | chr1_4:69724113-69724132 | Msa0181490:intron | 25.0% |
| ! | TTAAGAAAAAACTGCTTATG+AGG | + | chr1_4:69724140-69724159 | Msa0181490:intron | 25.0% |
| ! | TTATGAGGATGATATTTATG+AGG | + | chr1_4:69724155-69724174 | Msa0181490:intron | 25.0% |
| ! | AATAGAAGGAGAAATAATGT+TGG | + | chr1_4:69724205-69724224 | Msa0181490:intron | 25.0% |
| ! | ATAGAAGGAGAAATAATGTT+GGG | + | chr1_4:69724206-69724225 | Msa0181490:intron | 25.0% |
| ! | CATTATTTCATTCATTCCTA+TGG | - | chr1_4:69724254-69724273 | None:intergenic | 25.0% |
| ! | CGAATAAAAACAATCTTTAG+GGG | - | chr1_4:69724322-69724341 | None:intergenic | 25.0% |
| ! | TTATTGTTATGCTTGGTATT+TGG | + | chr1_4:69724569-69724588 | Msa0181490:intron | 25.0% |
| ! | GTTATTATGATAAACATTCC+CGG | + | chr1_4:69724591-69724610 | Msa0181490:intron | 25.0% |
| !! | TTTAGATATTTTCAATGTGC+AGG | + | chr1_4:69724643-69724662 | Msa0181490:intron | 25.0% |
| !! | TTAGATATTTTCAATGTGCA+GGG | + | chr1_4:69724644-69724663 | Msa0181490:intron | 25.0% |
| !!! | GGTTTTGTTTACTTTTGTTA+TGG | + | chr1_4:69724698-69724717 | Msa0181490:exon | 25.0% |
| TTTATTTGTGACAGGAGAAA+TGG | + | chr1_4:69723795-69723814 | Msa0181490:intron | 30.0% | |
| TATGCTCGTACTTTGTATTA+AGG | + | chr1_4:69724029-69724048 | Msa0181490:intron | 30.0% | |
| CTTTGTATTAAGGATCTGTT+TGG | + | chr1_4:69724039-69724058 | Msa0181490:intron | 30.0% | |
| TATTAAGGATCTGTTTGGAT+TGG | + | chr1_4:69724044-69724063 | Msa0181490:intron | 30.0% | |
| ! | ATGAGGATGACATTTTTGTT+AGG | + | chr1_4:69724172-69724191 | Msa0181490:intron | 30.0% |
| ! | TGAGGATGACATTTTTGTTA+GGG | + | chr1_4:69724173-69724192 | Msa0181490:intron | 30.0% |
| TAGGGAGATATATGAATAGA+AGG | + | chr1_4:69724191-69724210 | Msa0181490:intron | 30.0% | |
| TATTTCATTCATTCCTATGG+TGG | - | chr1_4:69724251-69724270 | None:intergenic | 30.0% | |
| ! | TTTTTGCATTCTGTTCATCT+TGG | + | chr1_4:69724290-69724309 | Msa0181490:intron | 30.0% |
| ATGAAAACATGGTCATCATA+AGG | - | chr1_4:69724927-69724946 | None:intergenic | 30.0% | |
| CATTAAACGTTATATGGTCT+AGG | + | chr1_4:69724944-69724963 | Msa0181490:three_prime_UTR | 30.0% | |
| TTGATACAGTAGTTTACCAA+AGG | + | chr1_4:69724972-69724991 | Msa0181490:three_prime_UTR | 30.0% | |
| TGATACAGTAGTTTACCAAA+GGG | + | chr1_4:69724973-69724992 | Msa0181490:three_prime_UTR | 30.0% | |
| TAATCACTTAGAATTCCCTT+TGG | - | chr1_4:69724991-69725010 | None:intergenic | 30.0% | |
| AAAGGGAATTCTAAGTGATT+AGG | + | chr1_4:69724990-69725009 | Msa0181490:three_prime_UTR | 30.0% | |
| GAATTCTAAGTGATTAGGAA+GGG | + | chr1_4:69724995-69725014 | Msa0181490:three_prime_UTR | 30.0% | |
| TTGATACAGTAGTTAACCAA+AGG | + | chr1_4:69725051-69725070 | Msa0181490:three_prime_UTR | 30.0% | |
| TGATACAGTAGTTAACCAAA+GGG | + | chr1_4:69725052-69725071 | Msa0181490:three_prime_UTR | 30.0% | |
| TTTATTTGTGACAGGAGAAA+TGG | + | chr1_4:69723795-69723814 | Msa0181490:intron | 30.0% | |
| TATGCTCGTACTTTGTATTA+AGG | + | chr1_4:69724029-69724048 | Msa0181490:intron | 30.0% | |
| CTTTGTATTAAGGATCTGTT+TGG | + | chr1_4:69724039-69724058 | Msa0181490:intron | 30.0% | |
| TATTAAGGATCTGTTTGGAT+TGG | + | chr1_4:69724044-69724063 | Msa0181490:intron | 30.0% | |
| ! | ATGAGGATGACATTTTTGTT+AGG | + | chr1_4:69724172-69724191 | Msa0181490:intron | 30.0% |
| ! | TGAGGATGACATTTTTGTTA+GGG | + | chr1_4:69724173-69724192 | Msa0181490:intron | 30.0% |
| TAGGGAGATATATGAATAGA+AGG | + | chr1_4:69724191-69724210 | Msa0181490:intron | 30.0% | |
| TATTTCATTCATTCCTATGG+TGG | - | chr1_4:69724251-69724270 | None:intergenic | 30.0% | |
| ! | TTTTTGCATTCTGTTCATCT+TGG | + | chr1_4:69724290-69724309 | Msa0181490:intron | 30.0% |
| ATGAAAACATGGTCATCATA+AGG | - | chr1_4:69724927-69724946 | None:intergenic | 30.0% | |
| CATTAAACGTTATATGGTCT+AGG | + | chr1_4:69724944-69724963 | Msa0181490:three_prime_UTR | 30.0% | |
| TTGATACAGTAGTTTACCAA+AGG | + | chr1_4:69724972-69724991 | Msa0181490:three_prime_UTR | 30.0% | |
| TGATACAGTAGTTTACCAAA+GGG | + | chr1_4:69724973-69724992 | Msa0181490:three_prime_UTR | 30.0% | |
| TAATCACTTAGAATTCCCTT+TGG | - | chr1_4:69724991-69725010 | None:intergenic | 30.0% | |
| AAAGGGAATTCTAAGTGATT+AGG | + | chr1_4:69724990-69725009 | Msa0181490:three_prime_UTR | 30.0% | |
| GAATTCTAAGTGATTAGGAA+GGG | + | chr1_4:69724995-69725014 | Msa0181490:three_prime_UTR | 30.0% | |
| TTGATACAGTAGTTAACCAA+AGG | + | chr1_4:69725051-69725070 | Msa0181490:three_prime_UTR | 30.0% | |
| TGATACAGTAGTTAACCAAA+GGG | + | chr1_4:69725052-69725071 | Msa0181490:three_prime_UTR | 30.0% | |
| AAGTGAAGAAGCTAACCTTA+GGG | - | chr1_4:69723633-69723652 | None:intergenic | 35.0% | |
| GAAATGAATACCTGTAGTGA+CGG | - | chr1_4:69723699-69723718 | None:intergenic | 35.0% | |
| ATTGAGATAATCGAAGAACG+AGG | - | chr1_4:69723726-69723745 | None:intergenic | 35.0% | |
| AAACCAGTACTTGGTTGTTT+AGG | - | chr1_4:69723823-69723842 | None:intergenic | 35.0% | |
| TTGTTCGTTGGATTGAACAA+AGG | + | chr1_4:69723841-69723860 | Msa0181490:CDS | 35.0% | |
| ATACACTATCTATCCACCAT+AGG | + | chr1_4:69724235-69724254 | Msa0181490:intron | 35.0% | |
| CAATAACAAGAACATGTTCC+GGG | - | chr1_4:69724612-69724631 | None:intergenic | 35.0% | |
| CCAATAACAAGAACATGTTC+CGG | - | chr1_4:69724613-69724632 | None:intergenic | 35.0% | |
| AGCAGGAGATAAGAAGAAAT+AGG | + | chr1_4:69724677-69724696 | Msa0181490:CDS | 35.0% | |
| ! | TTTGTTATGGCTTCACATGA+TGG | + | chr1_4:69724711-69724730 | Msa0181490:three_prime_UTR | 35.0% |
| TTGTTATGGCTTCACATGAT+GGG | + | chr1_4:69724712-69724731 | Msa0181490:three_prime_UTR | 35.0% | |
| GGAATTCTAAGTGATTAGGA+AGG | + | chr1_4:69724994-69725013 | Msa0181490:three_prime_UTR | 35.0% | |
| AAGTGAAGAAGCTAACCTTA+GGG | - | chr1_4:69723633-69723652 | None:intergenic | 35.0% | |
| GAAATGAATACCTGTAGTGA+CGG | - | chr1_4:69723699-69723718 | None:intergenic | 35.0% | |
| ATTGAGATAATCGAAGAACG+AGG | - | chr1_4:69723726-69723745 | None:intergenic | 35.0% | |
| AAACCAGTACTTGGTTGTTT+AGG | - | chr1_4:69723823-69723842 | None:intergenic | 35.0% | |
| TTGTTCGTTGGATTGAACAA+AGG | + | chr1_4:69723841-69723860 | Msa0181490:CDS | 35.0% | |
| ATACACTATCTATCCACCAT+AGG | + | chr1_4:69724235-69724254 | Msa0181490:intron | 35.0% | |
| CAATAACAAGAACATGTTCC+GGG | - | chr1_4:69724612-69724631 | None:intergenic | 35.0% | |
| CCAATAACAAGAACATGTTC+CGG | - | chr1_4:69724613-69724632 | None:intergenic | 35.0% | |
| AGCAGGAGATAAGAAGAAAT+AGG | + | chr1_4:69724677-69724696 | Msa0181490:CDS | 35.0% | |
| ! | TTTGTTATGGCTTCACATGA+TGG | + | chr1_4:69724711-69724730 | Msa0181490:three_prime_UTR | 35.0% |
| TTGTTATGGCTTCACATGAT+GGG | + | chr1_4:69724712-69724731 | Msa0181490:three_prime_UTR | 35.0% | |
| GGAATTCTAAGTGATTAGGA+AGG | + | chr1_4:69724994-69725013 | Msa0181490:three_prime_UTR | 35.0% | |
| AGATACTCGAAAGAACCCTA+AGG | + | chr1_4:69723615-69723634 | Msa0181490:five_prime_UTR | 40.0% | |
| GAAGTGAAGAAGCTAACCTT+AGG | - | chr1_4:69723634-69723653 | None:intergenic | 40.0% | |
| ATTCCTTCTTTGTGACGATG+TGG | - | chr1_4:69723867-69723886 | None:intergenic | 40.0% | |
| CATCGTCACAAAGAAGGAAT+TGG | + | chr1_4:69723867-69723886 | Msa0181490:CDS | 40.0% | |
| CATTCTGTTCATCTTGGATG+TGG | + | chr1_4:69724296-69724315 | Msa0181490:intron | 40.0% | |
| TCGTTCAGAAAACAAGCAAG+AGG | + | chr1_4:69724339-69724358 | Msa0181490:intron | 40.0% | |
| CGTTCAGAAAACAAGCAAGA+GGG | + | chr1_4:69724340-69724359 | Msa0181490:intron | 40.0% | |
| TCAAGGTTGGAAAAGACAAG+AGG | + | chr1_4:69724435-69724454 | Msa0181490:CDS | 40.0% | |
| CAAGGTTGGAAAAGACAAGA+GGG | + | chr1_4:69724436-69724455 | Msa0181490:CDS | 40.0% | |
| !! | AAAAGACAAGAGGGCACTTA+AGG | + | chr1_4:69724445-69724464 | Msa0181490:CDS | 40.0% |
| AAGGTTGCAAAGAGAAAGCT+TGG | + | chr1_4:69724464-69724483 | Msa0181490:CDS | 40.0% | |
| CTTCTTCTTTGCACGTTTGT+GGG | - | chr1_4:69724492-69724511 | None:intergenic | 40.0% | |
| TCTTCTTCTTTGCACGTTTG+TGG | - | chr1_4:69724493-69724512 | None:intergenic | 40.0% | |
| ! | CCGGAACATGTTCTTGTTAT+TGG | + | chr1_4:69724610-69724629 | Msa0181490:intron | 40.0% |
| ! | ATATTTTCAATGTGCAGGGC+TGG | + | chr1_4:69724648-69724667 | Msa0181490:intron | 40.0% |
| AGATACTCGAAAGAACCCTA+AGG | + | chr1_4:69723615-69723634 | Msa0181490:five_prime_UTR | 40.0% | |
| GAAGTGAAGAAGCTAACCTT+AGG | - | chr1_4:69723634-69723653 | None:intergenic | 40.0% | |
| ATTCCTTCTTTGTGACGATG+TGG | - | chr1_4:69723867-69723886 | None:intergenic | 40.0% | |
| CATCGTCACAAAGAAGGAAT+TGG | + | chr1_4:69723867-69723886 | Msa0181490:CDS | 40.0% | |
| CATTCTGTTCATCTTGGATG+TGG | + | chr1_4:69724296-69724315 | Msa0181490:intron | 40.0% | |
| TCGTTCAGAAAACAAGCAAG+AGG | + | chr1_4:69724339-69724358 | Msa0181490:intron | 40.0% | |
| CGTTCAGAAAACAAGCAAGA+GGG | + | chr1_4:69724340-69724359 | Msa0181490:intron | 40.0% | |
| TCAAGGTTGGAAAAGACAAG+AGG | + | chr1_4:69724435-69724454 | Msa0181490:CDS | 40.0% | |
| CAAGGTTGGAAAAGACAAGA+GGG | + | chr1_4:69724436-69724455 | Msa0181490:CDS | 40.0% | |
| !! | AAAAGACAAGAGGGCACTTA+AGG | + | chr1_4:69724445-69724464 | Msa0181490:CDS | 40.0% |
| AAGGTTGCAAAGAGAAAGCT+TGG | + | chr1_4:69724464-69724483 | Msa0181490:CDS | 40.0% | |
| CTTCTTCTTTGCACGTTTGT+GGG | - | chr1_4:69724492-69724511 | None:intergenic | 40.0% | |
| TCTTCTTCTTTGCACGTTTG+TGG | - | chr1_4:69724493-69724512 | None:intergenic | 40.0% | |
| ! | CCGGAACATGTTCTTGTTAT+TGG | + | chr1_4:69724610-69724629 | Msa0181490:intron | 40.0% |
| ! | ATATTTTCAATGTGCAGGGC+TGG | + | chr1_4:69724648-69724667 | Msa0181490:intron | 40.0% |
| GCTCCTAAACAACCAAGTAC+TGG | + | chr1_4:69723817-69723836 | Msa0181490:CDS | 45.0% | |
| CCAACGAACAAACCAGTACT+TGG | - | chr1_4:69723832-69723851 | None:intergenic | 45.0% | |
| !! | CCAAGTACTGGTTTGTTCGT+TGG | + | chr1_4:69723829-69723848 | Msa0181490:CDS | 45.0% |
| TGTGAGGAACCTCATTAGAG+AGG | + | chr1_4:69724370-69724389 | Msa0181490:CDS | 45.0% | |
| AACCTCATTAGAGAGGTTGC+TGG | + | chr1_4:69724377-69724396 | Msa0181490:CDS | 45.0% | |
| ACCTCATTAGAGAGGTTGCT+GGG | + | chr1_4:69724378-69724397 | Msa0181490:CDS | 45.0% | |
| TCAGTGATACGCTTCTCGTA+AGG | - | chr1_4:69724410-69724429 | None:intergenic | 45.0% | |
| ATCACTGAGTTGCTCAAGGT+TGG | + | chr1_4:69724422-69724441 | Msa0181490:CDS | 45.0% | |
| ACGTGCAAAGAAGAAGAGAG+AGG | + | chr1_4:69724496-69724515 | Msa0181490:CDS | 45.0% | |
| AGGAGATGTCTAATGTCCTC+AGG | + | chr1_4:69724516-69724535 | Msa0181490:CDS | 45.0% | |
| CTAATGTCCTCAGGAAGATG+AGG | + | chr1_4:69724525-69724544 | Msa0181490:CDS | 45.0% | |
| GAACAAACCTCATCTTCCTG+AGG | - | chr1_4:69724535-69724554 | None:intergenic | 45.0% | |
| GCTCCTAAACAACCAAGTAC+TGG | + | chr1_4:69723817-69723836 | Msa0181490:CDS | 45.0% | |
| CCAACGAACAAACCAGTACT+TGG | - | chr1_4:69723832-69723851 | None:intergenic | 45.0% | |
| !! | CCAAGTACTGGTTTGTTCGT+TGG | + | chr1_4:69723829-69723848 | Msa0181490:CDS | 45.0% |
| TGTGAGGAACCTCATTAGAG+AGG | + | chr1_4:69724370-69724389 | Msa0181490:CDS | 45.0% | |
| AACCTCATTAGAGAGGTTGC+TGG | + | chr1_4:69724377-69724396 | Msa0181490:CDS | 45.0% | |
| ACCTCATTAGAGAGGTTGCT+GGG | + | chr1_4:69724378-69724397 | Msa0181490:CDS | 45.0% | |
| TCAGTGATACGCTTCTCGTA+AGG | - | chr1_4:69724410-69724429 | None:intergenic | 45.0% | |
| ATCACTGAGTTGCTCAAGGT+TGG | + | chr1_4:69724422-69724441 | Msa0181490:CDS | 45.0% | |
| ACGTGCAAAGAAGAAGAGAG+AGG | + | chr1_4:69724496-69724515 | Msa0181490:CDS | 45.0% | |
| AGGAGATGTCTAATGTCCTC+AGG | + | chr1_4:69724516-69724535 | Msa0181490:CDS | 45.0% | |
| CTAATGTCCTCAGGAAGATG+AGG | + | chr1_4:69724525-69724544 | Msa0181490:CDS | 45.0% | |
| GAACAAACCTCATCTTCCTG+AGG | - | chr1_4:69724535-69724554 | None:intergenic | 45.0% | |
| ! | TCTGAGATCACCGTCACTAC+AGG | + | chr1_4:69723686-69723705 | Msa0181490:five_prime_UTR | 50.0% |
| AGGCCACATCGTCACAAAGA+AGG | + | chr1_4:69723861-69723880 | Msa0181490:CDS | 50.0% | |
| ACCCAGCAACCTCTCTAATG+AGG | - | chr1_4:69724382-69724401 | None:intergenic | 50.0% | |
| GCGTATCACTGAGTTGCTCA+AGG | + | chr1_4:69724418-69724437 | Msa0181490:CDS | 50.0% | |
| ! | TTTTCAATGTGCAGGGCTGG+TGG | + | chr1_4:69724651-69724670 | Msa0181490:intron | 50.0% |
| ! | TCTGAGATCACCGTCACTAC+AGG | + | chr1_4:69723686-69723705 | Msa0181490:five_prime_UTR | 50.0% |
| AGGCCACATCGTCACAAAGA+AGG | + | chr1_4:69723861-69723880 | Msa0181490:CDS | 50.0% | |
| ACCCAGCAACCTCTCTAATG+AGG | - | chr1_4:69724382-69724401 | None:intergenic | 50.0% | |
| GCGTATCACTGAGTTGCTCA+AGG | + | chr1_4:69724418-69724437 | Msa0181490:CDS | 50.0% | |
| ! | TTTTCAATGTGCAGGGCTGG+TGG | + | chr1_4:69724651-69724670 | Msa0181490:intron | 50.0% |
| ! | TAACACCAGAGAGAGTGCGG+TGG | - | chr1_4:69723661-69723680 | None:intergenic | 55.0% |
| ACCGCACTCTCTCTGGTGTT+AGG | + | chr1_4:69723660-69723679 | Msa0181490:five_prime_UTR | 55.0% | |
| CCCTAACACCAGAGAGAGTG+CGG | - | chr1_4:69723664-69723683 | None:intergenic | 55.0% | |
| ! | CCGCACTCTCTCTGGTGTTA+GGG | + | chr1_4:69723661-69723680 | Msa0181490:five_prime_UTR | 55.0% |
| ! | GCAAGAGGGTGCACTTTGTG+AGG | + | chr1_4:69724354-69724373 | Msa0181490:CDS | 55.0% |
| ! | TAACACCAGAGAGAGTGCGG+TGG | - | chr1_4:69723661-69723680 | None:intergenic | 55.0% |
| ACCGCACTCTCTCTGGTGTT+AGG | + | chr1_4:69723660-69723679 | Msa0181490:five_prime_UTR | 55.0% | |
| CCCTAACACCAGAGAGAGTG+CGG | - | chr1_4:69723664-69723683 | None:intergenic | 55.0% | |
| ! | CCGCACTCTCTCTGGTGTTA+GGG | + | chr1_4:69723661-69723680 | Msa0181490:five_prime_UTR | 55.0% |
| ! | GCAAGAGGGTGCACTTTGTG+AGG | + | chr1_4:69724354-69724373 | Msa0181490:CDS | 55.0% |
| ! | CCAGAGAGAGTGCGGTGGAA+TGG | - | chr1_4:69723656-69723675 | None:intergenic | 60.0% |
| CCATTCCACCGCACTCTCTC+TGG | + | chr1_4:69723653-69723672 | Msa0181490:five_prime_UTR | 60.0% | |
| TCCACGTCCTTCAGCTCGCA+AGG | + | chr1_4:69723891-69723910 | Msa0181490:CDS | 60.0% | |
| CCACGTCCTTCAGCTCGCAA+GGG | + | chr1_4:69723892-69723911 | Msa0181490:CDS | 60.0% | |
| CACGTCCTTCAGCTCGCAAG+GGG | + | chr1_4:69723893-69723912 | Msa0181490:CDS | 60.0% | |
| ACGTCCTTCAGCTCGCAAGG+GGG | + | chr1_4:69723894-69723913 | Msa0181490:CDS | 60.0% | |
| ! | TCAATGTGCAGGGCTGGTGG+TGG | + | chr1_4:69724654-69724673 | Msa0181490:intron | 60.0% |
| ! | CCAGAGAGAGTGCGGTGGAA+TGG | - | chr1_4:69723656-69723675 | None:intergenic | 60.0% |
| CCATTCCACCGCACTCTCTC+TGG | + | chr1_4:69723653-69723672 | Msa0181490:five_prime_UTR | 60.0% | |
| TCCACGTCCTTCAGCTCGCA+AGG | + | chr1_4:69723891-69723910 | Msa0181490:CDS | 60.0% | |
| CCACGTCCTTCAGCTCGCAA+GGG | + | chr1_4:69723892-69723911 | Msa0181490:CDS | 60.0% | |
| CACGTCCTTCAGCTCGCAAG+GGG | + | chr1_4:69723893-69723912 | Msa0181490:CDS | 60.0% | |
| ACGTCCTTCAGCTCGCAAGG+GGG | + | chr1_4:69723894-69723913 | Msa0181490:CDS | 60.0% | |
| ! | TCAATGTGCAGGGCTGGTGG+TGG | + | chr1_4:69724654-69724673 | Msa0181490:intron | 60.0% |
| CCCTTGCGAGCTGAAGGACG+TGG | - | chr1_4:69723895-69723914 | None:intergenic | 65.0% | |
| CTGACCCCCTTGCGAGCTGA+AGG | - | chr1_4:69723901-69723920 | None:intergenic | 65.0% | |
| CCCTTGCGAGCTGAAGGACG+TGG | - | chr1_4:69723895-69723914 | None:intergenic | 65.0% | |
| CTGACCCCCTTGCGAGCTGA+AGG | - | chr1_4:69723901-69723920 | None:intergenic | 65.0% | |
| !! | TGCAGGGCTGGTGGTGGAGC+AGG | + | chr1_4:69724660-69724679 | Msa0181490:intron | 70.0% |
| !! | TGCAGGGCTGGTGGTGGAGC+AGG | + | chr1_4:69724660-69724679 | Msa0181490:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 69723582 | 69725080 | 69723582 | ID=Msa0181490;Name=Msa0181490 |
| chr1_4 | mRNA | 69723582 | 69725080 | 69723582 | ID=Msa0181490-mRNA-1;Parent=Msa0181490;Name=Msa0181490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=131|1|1|1|1|1|4|382|111 |
| chr1_4 | exon | 69723582 | 69723707 | 69723582 | ID=Msa0181490-mRNA-1:exon:23202;Parent=Msa0181490-mRNA-1 |
| chr1_4 | exon | 69723809 | 69723915 | 69723809 | ID=Msa0181490-mRNA-1:exon:23203;Parent=Msa0181490-mRNA-1 |
| chr1_4 | exon | 69724347 | 69724546 | 69724347 | ID=Msa0181490-mRNA-1:exon:23204;Parent=Msa0181490-mRNA-1 |
| chr1_4 | exon | 69724665 | 69725080 | 69724665 | ID=Msa0181490-mRNA-1:exon:23205;Parent=Msa0181490-mRNA-1 |
| chr1_4 | five_prime_UTR | 69723582 | 69723707 | 69723582 | ID=Msa0181490-mRNA-1:five_prime_utr;Parent=Msa0181490-mRNA-1 |
| chr1_4 | five_prime_UTR | 69723809 | 69723813 | 69723809 | ID=Msa0181490-mRNA-1:five_prime_utr;Parent=Msa0181490-mRNA-1 |
| chr1_4 | CDS | 69723814 | 69723915 | 69723814 | ID=Msa0181490-mRNA-1:cds;Parent=Msa0181490-mRNA-1 |
| chr1_4 | CDS | 69724347 | 69724546 | 69724347 | ID=Msa0181490-mRNA-1:cds;Parent=Msa0181490-mRNA-1 |
| chr1_4 | CDS | 69724665 | 69724698 | 69724665 | ID=Msa0181490-mRNA-1:cds;Parent=Msa0181490-mRNA-1 |
| chr1_4 | three_prime_UTR | 69724699 | 69725080 | 69724699 | ID=Msa0181490-mRNA-1:three_prime_utr;Parent=Msa0181490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
