AlfalfaGEDB | Msa1106500

M. sativa cultivar zhongmu-4 / Msa1106500

KEGG: K05909
GO: GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576
PFAM: PF07732.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106500	XP_013448890.1	97.470	593	15	0	1	593	1	593	0.0	1202

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106500	sp\|Q9FJD5\|LAC17_ARATH	66.837	588	176	4	12	593	3	577	0.0	834

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1106500	A0A072TZT9	97.470	593	15	0	1	593	1	593	0.0	1202

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0174450	Msa1106500	0.805095	1.575289e-49	-8.615850e-47
Msa0193850	Msa1106500	0.833126	6.377106e-56	-8.615850e-47
Msa0199960	Msa1106500	0.801542	8.574048e-49	-8.615850e-47
Msa0235710	Msa1106500	0.818077	2.366258e-52	-8.615850e-47
Msa0243600	Msa1106500	0.830362	3.064909e-55	-8.615850e-47
Msa0274440	Msa1106500	0.822532	2.252573e-53	-8.615850e-47
Msa0282220	Msa1106500	0.846620	1.937249e-59	-8.615850e-47
Msa0314170	Msa1106500	0.857623	1.439077e-62	-8.615850e-47
Msa0392380	Msa1106500	0.806250	9.009892e-50	-8.615850e-47
Msa0440320	Msa1106500	0.805277	1.442873e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1106500	MtrunA17_Chr7g0238981	97.470	593	15	0	1	593	1	593	1202
Msa1106500	MtrunA17_Chr7g0237441	72.727	550	149	1	45	593	31	580	852
Msa1106500	MtrunA17_Chr7g0238351	71.869	551	153	2	45	593	31	581	838
Msa1106500	MtrunA17_Chr7g0237491	71.949	549	153	1	46	593	32	580	837
Msa1106500	MtrunA17_Chr7g0238941	64.527	592	187	5	7	593	5	578	797
Msa1106500	MtrunA17_Chr4g0031901	66.483	543	175	4	40	581	37	573	777
Msa1106500	MtrunA17_Chr3g0104061	62.888	547	187	6	47	593	26	556	713
Msa1106500	MtrunA17_Chr5g0429511	61.314	548	195	7	47	593	27	558	705
Msa1106500	MtrunA17_Chr4g0005921	58.532	586	214	6	8	593	1	557	696
Msa1106500	MtrunA17_Chr5g0404341	59.489	548	206	7	47	593	34	566	686

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1106500	AT5G60020.1	66.837	588	176	4	12	593	3	577	834
Msa1106500	AT5G60020.3	70.092	545	157	3	55	593	1	545	819
Msa1106500	AT2G29130.1	66.367	556	180	3	40	593	23	573	797
Msa1106500	AT5G60020.2	65.934	546	167	4	12	551	3	535	757
Msa1106500	AT2G38080.1	61.609	547	195	8	47	593	27	558	701
Msa1106500	AT5G58910.2	59.273	550	209	7	47	593	30	567	676
Msa1106500	AT5G58910.3	59.273	550	208	8	47	593	30	566	673
Msa1106500	AT5G03260.1	58.759	548	209	7	47	593	26	557	670
Msa1106500	AT5G01190.1	57.168	579	220	7	16	593	7	558	651
Msa1106500	AT5G58910.1	58.118	542	205	8	55	593	1	523	642

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Find 131 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTGAAAGAGGAAA+TGG	0.361932	7_3:+46452983	Msa1106500:exon
AAACAAATCCCAATTGTATT+AGG	0.209195	7_3:+46453805	Msa1106500:CDS
AAAGGATGAGGGAATGGATA+AGG	0.497303	7_3:-46453781	None:intergenic
AAATTTGGCATTTGGTGTTT+TGG	0.262444	7_3:-46454534	None:intergenic
AACACCACCAAAGAACCTCA+TGG	0.647380	7_3:+46455015	Msa1106500:CDS
AACACTGCTGGTGTTCCATC+TGG	0.429175	7_3:+46455238	Msa1106500:CDS
AACATTCACTTTCAAACACT+AGG	0.651706	7_3:+46454636	Msa1106500:CDS
AACATTGTACTCATCACACC+AGG	0.654689	7_3:+46454479	Msa1106500:CDS
AACTCCACTTTGGTATTGTA+TGG	0.370330	7_3:-46455067	None:intergenic
AACTGTCAATGGACAATTTC+CGG	0.204561	7_3:+46453293	Msa1106500:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTCTTTAACTAGAAATTG+AGG	-	chr7_3:46452957-46452976	None:intergenic	30.0%
CAAAACATGTTAGAACAACA+AGG	+	chr7_3:46453120-46453139	Msa1106500:CDS	30.0%
TTGCAATTTGATCTGTACAA+AGG	-	chr7_3:46453238-46453257	None:intergenic	30.0%
AGTACAATGTTTCCATTCAT+TGG	+	chr7_3:46453376-46453395	Msa1106500:CDS	30.0%
GTGTACAACTTCAAAATCAT+AGG	+	chr7_3:46453667-46453686	Msa1106500:CDS	30.0%
TTCAAAATCATAGGACAAAG+AGG	+	chr7_3:46453676-46453695	Msa1106500:CDS	30.0%
TTAACTCTGATAACATGGTT+AGG	+	chr7_3:46453908-46453927	Msa1106500:intron	30.0%
TAACTCTGATAACATGGTTA+GGG	+	chr7_3:46453909-46453928	Msa1106500:intron	30.0%
ATAAATCAAGCAACACAAAC+AGG	+	chr7_3:46453962-46453981	Msa1106500:CDS	30.0%
TAAATCAAGCAACACAAACA+GGG	+	chr7_3:46453963-46453982	Msa1106500:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	46452870	46456132	46452870	ID=Msa1106500;Name=Msa1106500
chr7_3	mRNA	46452870	46456132	46452870	ID=Msa1106500-mRNA-1;Parent=Msa1106500;Name=Msa1106500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=132\|1\|1\|1\|1\|1\|6\|365\|593
chr7_3	exon	46452870	46453157	46452870	ID=Msa1106500-mRNA-1:exon:9513;Parent=Msa1106500-mRNA-1
chr7_3	exon	46453246	46453397	46453246	ID=Msa1106500-mRNA-1:exon:9514;Parent=Msa1106500-mRNA-1
chr7_3	exon	46453582	46453826	46453582	ID=Msa1106500-mRNA-1:exon:9515;Parent=Msa1106500-mRNA-1
chr7_3	exon	46453930	46454058	46453930	ID=Msa1106500-mRNA-1:exon:9516;Parent=Msa1106500-mRNA-1
chr7_3	exon	46454330	46455298	46454330	ID=Msa1106500-mRNA-1:exon:9517;Parent=Msa1106500-mRNA-1
chr7_3	exon	46455637	46456132	46455637	ID=Msa1106500-mRNA-1:exon:9518;Parent=Msa1106500-mRNA-1
chr7_3	five_prime_UTR	46452870	46453001	46452870	ID=Msa1106500-mRNA-1:five_prime_utr;Parent=Msa1106500-mRNA-1
chr7_3	CDS	46453002	46453157	46453002	ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3	CDS	46453246	46453397	46453246	ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3	CDS	46453582	46453826	46453582	ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3	CDS	46453930	46454058	46453930	ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3	CDS	46454330	46455298	46454330	ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3	CDS	46455637	46455767	46455637	ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3	three_prime_UTR	46455768	46456132	46455768	ID=Msa1106500-mRNA-1:three_prime_utr;Parent=Msa1106500-mRNA-1

Gene Sequence

>Msa1106500

ATGGATTTTGCTTATATCAAAATGTCAAGCTTCATGAGAGCTATGTTGATTGTGTTATGTGCTTTGTGGATATTGCCAGAGCTAGCACATGCAAGACATGTTAGAACAACAAGTCATGCAAAACATGTTAGAACAACAAGGCATTACAAGTTTAACATCAAATTGCAAAATGTCACAAGACTTTGCCAAACAAAGAGCATTGTAACTGTCAATGGACAATTTCCGGGTCCTAGAATCATAGCAAGAGAAGGCGACAGAGTCATCGTGAAAGTGGTTAACCACGTTCAGTACAATGTTTCCATTCATTGGCACGGAATTCGTCAAGTAAGAAGTGCTTGGGCAGATGGACCTGCATATATAACGCAATGTCCAATTCAGCCAGGACAAAGTTATGTGTACAACTTCAAAATCATAGGACAAAGAGGAACATTGTGGTATCATGCACATATTTCATGGCTTAGATCTACTCTTCATGGTCCTATTGTCATTCTTCCCAAAAAGCATGTGCCTTATCCATTCCCTCATCCTTTCAAACAAATCCCAATTGTATTAGGGGAGTGGTGGAAAGCAGACACAGAAGCAGTTATAAATCAAGCAACACAAACAGGGTTAGCACCTAACACCTCAGATGCTCACACCATCAATGGCCTTCCAGGTCCTCTCCACAACTGTTCAGCTAAAGATACCTTTAAGCTCAAGGTTCTGCCAGGGAAAACATATCTACTAAGAATAATCAATGCTGCACTCAATGATGAGATGTTCTTTAGCATTGCTAATCACACCCTCCTTGTTGTTGATGCTGATGCTGTTTATGTAAAGCCCTTTAGAACAAACATTGTACTCATCACACCAGGCCAAACCACCAATGTCCTTCTTAAAACCAAATCCAAAACACCAAATGCCAAATTTGTCATAGCTTCAAGACCTTATGCTACAGGTCCTGCATCTTTTGACAACACTACAGCAATTGGTTTCTTGGAATACAAGAAACATTCACTTTCAAACACTAGGTCAAAAAACAAAACTGTTAAACTTTTTAGACCAACACTTCCTAAATTCAATGACACTATCTTTGCAATGAACTTCAACACGAAACTTCGTAGCTTGAACAGCAAGAAATTCCCAGCAAAAGTTCCGAAAACCGTTGACAAGCACTTTTTCTTCACAGTTGGTTTAGGTATTAGTCAATGTTCAAAAAACCAAGCATGTCAAGGACCTAATAACACAAGAGTAGCAGCAGCTATTAACAATGTTTCATTTGTGATGCCAAACACTGCTTTACTTCAAGCTCATTTCTTCAACAAATCAAAAGGAGTTTTCACTACTGATTTTCCTTCTAATCCACCTGTTAAATTCAACTACACTGGAACACCACCAAAGAACCTCATGGTAAAGAGTGGAACTAAGGTTGCAGTTTTGCCATACAATACCAAAGTGGAGTTGGTGTTGCAGGATACAAGTATTCTTGGTGCTGAGAGTCATCCATTGCATCTTCATGGTTTTAACTTCTTCATTGTTGGTCAAGGAAATGGAAACTTTGACCCTAGAAAGGATCCTTCTAAGTTCAATTTGGTTGATCCTGTTGAAAGGAACACTGCTGGTGTTCCATCTGGTGGATGGCTTGCCTTGAGATTCCTTGCAGATAATCCAGGTGTTTGGTTCATGCATTGCCATCTTGAAGTGCACACAAGTTGGGGATTGAAAATGGCATGGATTGTCCAGGATGGAAAACGGCGCAATCAGAAGCTGCCACCTCCACCTTCTGATCTTCCCAAATGTTGA

Protein sequence

>Msa1106500

MDFAYIKMSSFMRAMLIVLCALWILPELAHARHVRTTSHAKHVRTTRHYKFNIKLQNVTRLCQTKSIVTVNGQFPGPRIIAREGDRVIVKVVNHVQYNVSIHWHGIRQVRSAWADGPAYITQCPIQPGQSYVYNFKIIGQRGTLWYHAHISWLRSTLHGPIVILPKKHVPYPFPHPFKQIPIVLGEWWKADTEAVINQATQTGLAPNTSDAHTINGLPGPLHNCSAKDTFKLKVLPGKTYLLRIINAALNDEMFFSIANHTLLVVDADAVYVKPFRTNIVLITPGQTTNVLLKTKSKTPNAKFVIASRPYATGPASFDNTTAIGFLEYKKHSLSNTRSKNKTVKLFRPTLPKFNDTIFAMNFNTKLRSLNSKKFPAKVPKTVDKHFFFTVGLGISQCSKNQACQGPNNTRVAAAINNVSFVMPNTALLQAHFFNKSKGVFTTDFPSNPPVKFNYTGTPPKNLMVKSGTKVAVLPYNTKVELVLQDTSILGAESHPLHLHGFNFFIVGQGNGNFDPRKDPSKFNLVDPVERNTAGVPSGGWLALRFLADNPGVWFMHCHLEVHTSWGLKMAWIVQDGKRRNQKLPPPPSDLPKC*