AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1106500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106500 MtrunA17_Chr7g0238981 97.470 593 15 0 1 593 1 593 0.0 1202
Msa1106500 MtrunA17_Chr7g0237441 72.727 550 149 1 45 593 31 580 0.0 852
Msa1106500 MtrunA17_Chr7g0238351 71.869 551 153 2 45 593 31 581 0.0 838
Msa1106500 MtrunA17_Chr7g0237491 71.949 549 153 1 46 593 32 580 0.0 837
Msa1106500 MtrunA17_Chr7g0238941 64.527 592 187 5 7 593 5 578 0.0 797
Msa1106500 MtrunA17_Chr4g0031901 66.483 543 175 4 40 581 37 573 0.0 777
Msa1106500 MtrunA17_Chr3g0104061 62.888 547 187 6 47 593 26 556 0.0 713
Msa1106500 MtrunA17_Chr5g0429511 61.314 548 195 7 47 593 27 558 0.0 705
Msa1106500 MtrunA17_Chr4g0005921 58.532 586 214 6 8 593 1 557 0.0 696
Msa1106500 MtrunA17_Chr5g0404341 59.489 548 206 7 47 593 34 566 0.0 686
Msa1106500 MtrunA17_Chr5g0404361 58.394 548 211 6 47 593 80 611 0.0 673
Msa1106500 MtrunA17_Chr5g0436461 56.387 548 221 7 47 593 24 554 0.0 644
Msa1106500 MtrunA17_Chr5g0437681 51.630 552 252 8 48 593 25 567 0.0 593
Msa1106500 MtrunA17_Chr5g0431581 50.727 550 252 6 48 593 26 560 0.0 574
Msa1106500 MtrunA17_Chr3g0114211 50.631 555 251 10 46 593 32 570 0.0 566
Msa1106500 MtrunA17_Chr8g0346581 45.238 588 296 9 14 593 2 571 0.0 545
Msa1106500 MtrunA17_Chr2g0278811 44.810 578 280 6 47 593 38 607 0.0 531
Msa1106500 MtrunA17_Chr7g0240971 47.764 559 269 8 46 593 24 570 3.28e-175 508
Msa1106500 MtrunA17_Chr4g0008521 45.989 561 273 7 48 593 27 572 6.11e-175 508
Msa1106500 MtrunA17_Chr7g0240991 43.268 557 298 8 46 593 24 571 3.49e-168 490
Msa1106500 MtrunA17_Chr3g0133861 43.988 341 174 11 249 583 1 330 4.11e-84 266
Msa1106500 MtrunA17_Chr8g0382691 32.399 571 310 21 47 584 34 561 2.10e-74 248
Msa1106500 MtrunA17_Chr5g0436431 48.333 240 109 5 313 551 3 228 5.76e-69 223
Msa1106500 MtrunA17_Chr3g0118331 31.560 564 327 16 47 584 25 555 1.97e-66 226
Msa1106500 MtrunA17_Chr3g0118321 31.250 560 326 16 48 580 27 554 2.97e-66 226
Msa1106500 MtrunA17_Chr3g0133871 45.909 220 109 1 6 225 1 210 1.26e-65 214
Msa1106500 MtrunA17_Chr3g0079321 27.379 515 338 15 50 558 32 516 1.03e-45 170
Msa1106500 MtrunA17_Chr1g0157341 26.782 519 325 15 47 559 29 498 1.14e-43 164
Msa1106500 MtrunA17_Chr4g0056511 26.812 552 366 16 49 593 29 549 2.59e-43 163
Msa1106500 MtrunA17_Chr3g0143671 26.112 517 331 16 47 559 30 499 1.51e-38 149
Msa1106500 MtrunA17_Chr4g0038671 26.758 512 321 17 47 553 30 492 2.66e-38 148
Msa1106500 MtrunA17_Chr4g0024861 23.913 552 367 14 47 593 27 530 4.11e-35 139
Msa1106500 MtrunA17_Chr8g0374271 24.725 546 354 16 47 584 31 527 3.30e-34 136
Msa1106500 MtrunA17_Chr5g0402831 25.607 535 345 16 47 578 31 515 5.64e-34 135
Msa1106500 MtrunA17_Chr4g0043261 24.549 554 338 18 48 581 26 519 6.14e-33 133
Msa1106500 MtrunA17_Chr8g0374261 25.956 497 314 16 68 559 50 497 7.06e-33 132
Msa1106500 MtrunA17_Chr3g0121171 24.248 532 365 15 48 578 1177 1671 2.61e-32 133
Msa1106500 MtrunA17_Chr3g0121171 23.827 533 366 16 48 578 27 521 8.46e-32 132
Msa1106500 MtrunA17_Chr3g0121171 24.765 533 361 16 48 578 602 1096 2.50e-31 130
Msa1106500 MtrunA17_Chr3g0121171 24.268 478 322 16 103 578 1798 2237 5.01e-25 110
Msa1106500 MtrunA17_Chr2g0322441 25.136 553 359 16 47 593 30 533 2.97e-32 130
Msa1106500 MtrunA17_Chr7g0234061 24.861 539 353 18 48 574 30 528 4.16e-32 131
Msa1106500 MtrunA17_Chr3g0121161 24.765 533 361 16 48 578 67 561 5.00e-32 130
Msa1106500 MtrunA17_Chr3g0121151 24.578 533 362 15 48 578 67 561 5.96e-32 130
Msa1106500 MtrunA17_Chr3g0118351 32.081 346 192 11 259 584 5 327 6.72e-31 123
Msa1106500 MtrunA17_Chr4g0043251 25.049 515 330 19 65 569 45 513 1.10e-29 123
Msa1106500 MtrunA17_Chr4g0075071 25.933 509 330 12 47 553 31 494 1.34e-28 120
Msa1106500 MtrunA17_Chr3g0118341 35.135 148 92 4 47 192 26 171 1.36e-23 99.4
Msa1106500 MtrunA17_Chr1g0197301 27.731 357 227 9 237 593 4 329 2.82e-22 98.2
Msa1106500 MtrunA17_Chr4g0024641 24.242 462 290 19 101 553 3 413 6.28e-19 91.3
Msa1106500 MtrunA17_Chr5g0436411 58.929 56 23 0 47 102 24 79 1.33e-17 77.8
Msa1106500 MtrunA17_Chr1g0197311 26.168 214 122 5 57 238 34 243 1.81e-14 73.6
Msa1106500 MtrunA17_Chr3g0118931 43.902 82 44 1 503 584 10 89 4.24e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106500 AT5G60020.1 66.837 588 176 4 12 593 3 577 0.0 834
Msa1106500 AT5G60020.3 70.092 545 157 3 55 593 1 545 0.0 819
Msa1106500 AT2G29130.1 66.367 556 180 3 40 593 23 573 0.0 797
Msa1106500 AT5G60020.2 65.934 546 167 4 12 551 3 535 0.0 757
Msa1106500 AT2G38080.1 61.609 547 195 8 47 593 27 558 0.0 701
Msa1106500 AT5G58910.2 59.273 550 209 7 47 593 30 567 0.0 676
Msa1106500 AT5G58910.3 59.273 550 208 8 47 593 30 566 0.0 673
Msa1106500 AT5G03260.1 58.759 548 209 7 47 593 26 557 0.0 670
Msa1106500 AT5G01190.1 57.168 579 220 7 16 593 7 558 0.0 651
Msa1106500 AT5G58910.1 58.118 542 205 8 55 593 1 523 0.0 642
Msa1106500 AT5G01190.2 56.131 579 212 8 16 593 7 544 0.0 627
Msa1106500 AT1G18140.1 50.360 556 268 3 45 593 27 581 0.0 598
Msa1106500 AT2G30210.1 48.557 589 281 7 8 593 1 570 0.0 598
Msa1106500 AT5G05390.1 52.330 558 244 8 43 593 23 565 0.0 590
Msa1106500 AT2G40370.1 48.768 568 272 9 38 593 20 580 0.0 573
Msa1106500 AT5G07130.1 49.365 551 266 8 49 593 26 569 0.0 556
Msa1106500 AT5G09360.1 47.091 550 270 9 48 593 37 569 0.0 546
Msa1106500 AT2G46570.1 44.245 556 285 8 46 593 31 569 0.0 531
Msa1106500 AT3G09220.1 47.566 534 263 6 49 576 28 550 7.59e-179 518
Msa1106500 AT5G48100.1 44.177 541 287 8 48 583 23 553 8.02e-169 492
Msa1106500 AT5G07130.2 49.491 491 235 8 109 593 1 484 5.13e-168 487
Msa1106500 AT5G07130.3 49.491 491 235 8 109 593 1 484 5.13e-168 487
Msa1106500 AT5G01050.1 43.761 553 285 6 51 593 32 568 9.97e-167 488
Msa1106500 AT5G01040.1 44.301 544 279 6 58 593 39 566 1.84e-164 482
Msa1106500 AT2G46570.2 42.972 498 259 8 104 593 4 484 8.98e-157 458
Msa1106500 AT3G09220.2 47.948 463 224 6 120 576 2 453 1.93e-150 442
Msa1106500 AT4G39830.1 31.930 570 322 19 47 584 36 571 2.05e-75 251
Msa1106500 AT5G21105.1 29.460 611 360 17 3 584 1 569 5.61e-71 239
Msa1106500 AT5G21100.1 31.071 560 315 17 62 590 39 558 1.18e-70 238
Msa1106500 AT5G21105.3 28.720 578 343 16 3 551 1 538 1.47e-61 213
Msa1106500 AT4G39830.2 30.709 508 287 18 108 584 3 476 4.99e-55 194
Msa1106500 AT4G39830.3 30.572 507 287 18 109 584 2 474 3.08e-54 192
Msa1106500 AT4G39830.4 29.783 507 280 18 108 584 3 463 1.96e-50 181
Msa1106500 AT4G12420.1 26.476 525 348 15 49 567 27 519 1.08e-41 159
Msa1106500 AT4G12420.2 26.476 525 348 15 49 567 27 519 1.08e-41 159
Msa1106500 AT1G75790.1 25.170 588 376 18 16 593 8 541 7.85e-41 156
Msa1106500 AT1G76160.1 25.142 529 340 16 47 569 28 506 8.20e-41 156
Msa1106500 AT5G21105.2 30.899 356 215 8 232 584 51 378 3.69e-40 151
Msa1106500 AT5G66920.1 26.047 549 357 18 47 593 37 538 3.75e-39 151
Msa1106500 AT5G51480.1 25.536 513 342 15 49 553 30 510 7.80e-39 151
Msa1106500 AT1G21860.1 24.708 514 340 11 47 559 29 496 1.43e-38 149
Msa1106500 AT1G21850.1 25.869 518 329 15 47 559 29 496 1.93e-38 149
Msa1106500 AT5G48450.2 26.718 524 338 17 49 567 31 513 3.20e-38 149
Msa1106500 AT5G48450.1 26.718 524 338 17 49 567 31 513 6.18e-38 149
Msa1106500 AT4G22010.1 25.683 549 362 18 47 593 26 530 2.86e-37 145
Msa1106500 AT1G41830.1 25.573 524 344 17 47 569 29 507 5.84e-37 145
Msa1106500 AT1G55570.1 26.430 507 336 14 48 553 30 500 3.94e-34 137
Msa1106500 AT4G28090.1 24.297 498 325 15 68 559 49 500 4.08e-34 137
Msa1106500 AT3G13390.1 25.787 508 338 14 48 553 29 499 2.41e-33 134
Msa1106500 AT4G25240.2 29.123 285 195 5 49 329 31 312 3.47e-30 125
Msa1106500 AT4G25240.1 29.123 285 195 5 49 329 31 312 3.47e-30 125
Msa1106500 AT1G55560.1 23.913 506 347 12 49 553 28 496 5.08e-30 124
Msa1106500 AT4G38420.1 23.782 513 342 14 47 553 30 499 5.73e-30 124
Msa1106500 AT4G37160.1 25.182 548 361 15 49 593 33 534 3.26e-29 122
Msa1106500 AT3G13400.2 23.669 507 349 12 48 553 28 497 1.51e-28 120
Msa1106500 AT3G13400.1 23.669 507 349 12 48 553 28 497 1.51e-28 120
Msa1106500 AT2G23630.1 24.906 530 352 13 65 593 48 532 1.56e-28 120
Msa1106500 AT2G23630.2 24.906 530 352 13 65 593 53 537 1.78e-28 120
Msa1106500 AT4G38420.3 23.232 495 331 13 47 535 30 481 5.67e-26 112
Msa1106500 AT4G38420.2 23.340 467 310 13 47 507 30 454 1.96e-23 103
Msa1106500 AT4G37160.2 27.372 274 183 5 49 317 33 295 7.59e-22 99.4

Find 131 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTCTTGCTATGATTCT+AGG 0.176044 7_3:-46453318 None:intergenic
CTCTTTACCATGAGGTTCTT+TGG 0.181622 7_3:-46455022 None:intergenic
CACTACAGCAATTGGTTTCT+TGG 0.184923 7_3:+46454604 Msa1106500:CDS
ATTAGTGTAATTAGCTAATT+AGG 0.197273 7_3:-46452867 None:intergenic
AACTGTCAATGGACAATTTC+CGG 0.204561 7_3:+46453293 Msa1106500:CDS
CTGGATTTGATTCTGTTTCT+TGG 0.206026 7_3:+46455822 Msa1106500:three_prime_UTR
AAACAAATCCCAATTGTATT+AGG 0.209195 7_3:+46453805 Msa1106500:CDS
AAGATAGTGTCATTGAATTT+AGG 0.232293 7_3:-46454698 None:intergenic
TCTTGAAGCTATGACAAATT+TGG 0.245270 7_3:-46454549 None:intergenic
GCTGCTACTCTTGTGTTATT+AGG 0.251421 7_3:-46454863 None:intergenic
AAATTTGGCATTTGGTGTTT+TGG 0.262444 7_3:-46454534 None:intergenic
AACTTAGAAGGATCCTTTCT+AGG 0.273886 7_3:-46455190 None:intergenic
TGGCAGAACCTTGAGCTTAA+AGG 0.284189 7_3:-46454333 None:intergenic
GGATCCTTCTAAGTTCAATT+TGG 0.286829 7_3:+46455198 Msa1106500:CDS
CCAGTGTAGTTGAATTTAAC+AGG 0.289288 7_3:-46454992 None:intergenic
TTCATTGTTGGTCAAGGAAA+TGG 0.299064 7_3:+46455157 Msa1106500:CDS
CACAAGTTGGGGATTGAAAA+TGG 0.302332 7_3:+46455671 Msa1106500:CDS
CACACCATCAATGGCCTTCC+AGG 0.308178 7_3:+46454010 Msa1106500:CDS
CTTAATTTACCTAATACAAT+TGG 0.315786 7_3:-46453814 None:intergenic
CAAAGTGGAGTTGGTGTTGC+AGG 0.318771 7_3:+46455078 Msa1106500:CDS
AGTACAATGTTTCCATTCAT+TGG 0.329779 7_3:+46453376 Msa1106500:CDS
TAACTTTGTCCTGGCTGAAT+TGG 0.344083 7_3:-46453643 None:intergenic
TGGCTTAGATCTACTCTTCA+TGG 0.347199 7_3:+46453727 Msa1106500:CDS
GGTATCATGCACATATTTCA+TGG 0.347980 7_3:+46453707 Msa1106500:CDS
AAAACAATTGAAAGAGGAAA+TGG 0.361932 7_3:+46452983 Msa1106500:exon
AATTTAACAGGTGGATTAGA+AGG 0.368105 7_3:-46454980 None:intergenic
AACTCCACTTTGGTATTGTA+TGG 0.370330 7_3:-46455067 None:intergenic
TTGCAGGATACAAGTATTCT+TGG 0.375423 7_3:+46455094 Msa1106500:CDS
CAGTTACAATGCTCTTTGTT+TGG 0.376016 7_3:-46453275 None:intergenic
AGTCATCCATTGCATCTTCA+TGG 0.378694 7_3:+46455124 Msa1106500:CDS
TAAGAAGGACATTGGTGGTT+TGG 0.380175 7_3:-46454502 None:intergenic
ATAAATCAAGCAACACAAAC+AGG 0.381784 7_3:+46453962 Msa1106500:CDS
AGTACAATGTTTGTTCTAAA+GGG 0.383064 7_3:-46454467 None:intergenic
TCAACCAAATTGAACTTAGA+AGG 0.383489 7_3:-46455202 None:intergenic
TTTGACAACACTACAGCAAT+TGG 0.396024 7_3:+46454596 Msa1106500:CDS
TCTTGAAGTGCACACAAGTT+GGG 0.398428 7_3:+46455659 Msa1106500:CDS
TGATTGTGTTATGTGCTTTG+TGG 0.400938 7_3:+46453048 Msa1106500:CDS
GCTATGACAAATTTGGCATT+TGG 0.418044 7_3:-46454542 None:intergenic
AACACTGCTGGTGTTCCATC+TGG 0.429175 7_3:+46455238 Msa1106500:CDS
ATATATCATGAGCAGGTGTT+TGG 0.430508 7_3:+46455622 Msa1106500:intron
GAGTACAATGTTTGTTCTAA+AGG 0.431202 7_3:-46454468 None:intergenic
CCAGCAGTGTTCCTTTCAAC+AGG 0.432956 7_3:-46455226 None:intergenic
GGGATTTGTTTGAAAGGATG+AGG 0.445137 7_3:-46453793 None:intergenic
ATCTTGAAGTGCACACAAGT+TGG 0.449598 7_3:+46455658 Msa1106500:CDS
GCTTGAAGTAAAGCAGTGTT+TGG 0.451339 7_3:-46454914 None:intergenic
ACTGTCAATGGACAATTTCC+GGG 0.454193 7_3:+46453294 Msa1106500:CDS
GTGTACAACTTCAAAATCAT+AGG 0.454539 7_3:+46453667 Msa1106500:CDS
AAGAGCATTGTAACTGTCAA+TGG 0.456736 7_3:+46453282 Msa1106500:CDS
TATTAGGTCCTTGACATGCT+TGG 0.457877 7_3:-46454847 None:intergenic
TTAATTTACCTAATACAATT+GGG 0.460162 7_3:-46453813 None:intergenic
GTAAGAAGTGCTTGGGCAGA+TGG 0.472599 7_3:+46453598 Msa1106500:CDS
CATTTCTTCAACAAATCAAA+AGG 0.475064 7_3:+46454938 Msa1106500:CDS
GTGTGAGCATCTGAGGTGTT+AGG 0.476432 7_3:-46453992 None:intergenic
CAACATTTGGGAAGATCAGA+AGG 0.480460 7_3:-46455744 None:intergenic
CTCCACAACTGTTCAGCTAA+AGG 0.481128 7_3:+46454037 Msa1106500:CDS
AACTTCTTCATTGTTGGTCA+AGG 0.481467 7_3:+46455151 Msa1106500:CDS
GAACAGTTGTGGAGAGGACC+TGG 0.482040 7_3:-46454028 None:intergenic
TTTAAGCTCAAGGTTCTGCC+AGG 0.483397 7_3:+46454335 Msa1106500:CDS
TGCAGATACCTTTAAGCTCA+AGG 0.483413 7_3:+46454325 Msa1106500:intron
ACTTAGAAGGATCCTTTCTA+GGG 0.485413 7_3:-46455189 None:intergenic
CTGGTGTTCCATCTGGTGGA+TGG 0.492079 7_3:+46455245 Msa1106500:CDS
AGGACATTGGTGGTTTGGCC+TGG 0.495075 7_3:-46454497 None:intergenic
AAAGGATGAGGGAATGGATA+AGG 0.497303 7_3:-46453781 None:intergenic
AGGACCTGGAAGGCCATTGA+TGG 0.497980 7_3:-46454014 None:intergenic
GGACATTGCGTTATATATGC+AGG 0.499120 7_3:-46453622 None:intergenic
CATGGTAAAGAGTGGAACTA+AGG 0.500017 7_3:+46455033 Msa1106500:CDS
TCAGATGCTCACACCATCAA+TGG 0.503271 7_3:+46454001 Msa1106500:CDS
TCGTCAAGTAAGAAGTGCTT+GGG 0.505452 7_3:+46453591 Msa1106500:CDS
GCTTCAAGACCTTATGCTAC+AGG 0.508249 7_3:+46454563 Msa1106500:CDS
ACAATTGGGATTTGTTTGAA+AGG 0.508370 7_3:-46453799 None:intergenic
TCAAAGAAAACAATTGAAAG+AGG 0.509823 7_3:+46452977 Msa1106500:five_prime_UTR
AATTGTATAATACCAATGAA+TGG 0.510045 7_3:-46453388 None:intergenic
TTCGTCAAGTAAGAAGTGCT+TGG 0.511052 7_3:+46453590 Msa1106500:CDS
TGGAAACTTTGACCCTAGAA+AGG 0.515071 7_3:+46455177 Msa1106500:CDS
TACCTTTAGCTGAACAGTTG+TGG 0.515649 7_3:-46454039 None:intergenic
AGATTCCTTGCAGATAATCC+AGG 0.516199 7_3:+46455277 Msa1106500:CDS
TGTTTGAAAGGATGAGGGAA+TGG 0.517009 7_3:-46453787 None:intergenic
AGCTCTTTAACTAGAAATTG+AGG 0.517600 7_3:-46452954 None:intergenic
TGATAACATGGTTAGGGGAG+TGG 0.524692 7_3:+46453915 Msa1106500:intron
GGATTTGTTTGAAAGGATGA+GGG 0.525005 7_3:-46453792 None:intergenic
CTGCAACACCAACTCCACTT+TGG 0.529500 7_3:-46455077 None:intergenic
GATGCAGGACCTGTAGCATA+AGG 0.529569 7_3:-46454572 None:intergenic
TCATTGAATTTAGGAAGTGT+TGG 0.529839 7_3:-46454689 None:intergenic
CTTGAAGTGCACACAAGTTG+GGG 0.530733 7_3:+46455660 Msa1106500:CDS
CCTGTTAAATTCAACTACAC+TGG 0.538497 7_3:+46454992 Msa1106500:CDS
ATTTGGTTGATCCTGTTGAA+AGG 0.541456 7_3:+46455215 Msa1106500:CDS
TTGTACACATAACTTTGTCC+TGG 0.542194 7_3:-46453652 None:intergenic
TTTACCATGAGGTTCTTTGG+TGG 0.544411 7_3:-46455019 None:intergenic
ATTGATGGTGTGAGCATCTG+AGG 0.546326 7_3:-46453999 None:intergenic
TTCAAAATCATAGGACAAAG+AGG 0.547023 7_3:+46453676 Msa1106500:CDS
TGTCTTGCATGTGCTAGCTC+TGG 0.547035 7_3:-46453077 None:intergenic
CGACAGAGTCATCGTGAAAG+TGG 0.548063 7_3:+46453341 Msa1106500:CDS
TTAAAACCATGAAGATGCAA+TGG 0.550655 7_3:-46455130 None:intergenic
GGAAGATCAGAAGGTGGAGG+TGG 0.559637 7_3:-46455735 None:intergenic
CTTGCTATGATTCTAGGACC+CGG 0.559664 7_3:-46453312 None:intergenic
ATACAATACCAAAGTGGAGT+TGG 0.567730 7_3:+46455069 Msa1106500:CDS
ACTGCTGGTGTTCCATCTGG+TGG 0.568021 7_3:+46455241 Msa1106500:CDS
GGATTGTCCAGGATGGAAAA+CGG 0.570747 7_3:+46455697 Msa1106500:CDS
GTTGGGGATTGAAAATGGCA+TGG 0.577039 7_3:+46455676 Msa1106500:CDS
GCCCACCTGGATTATCTGCA+AGG 0.582057 7_3:-46455282 None:intergenic
ACGCAATGTCCAATTCAGCC+AGG 0.591868 7_3:+46453634 Msa1106500:CDS
AAGGCAAGCCATCCACCAGA+TGG 0.592109 7_3:-46455253 None:intergenic
CCTGTTGAAAGGAACACTGC+TGG 0.597313 7_3:+46455226 Msa1106500:CDS
GAAAATGGCATGGATTGTCC+AGG 0.601401 7_3:+46455686 Msa1106500:CDS
AACTTGTGTGCACTTCAAGA+TGG 0.603600 7_3:-46455656 None:intergenic
CTCATTACAAAAGTTATGAG+TGG 0.609317 7_3:+46455978 Msa1106500:three_prime_UTR
TAACATGGTTAGGGGAGTGG+TGG 0.614786 7_3:+46453918 Msa1106500:intron
CAGCATCAGCATCAACAACA+AGG 0.618558 7_3:-46454433 None:intergenic
ATGGCATGGATTGTCCAGGA+TGG 0.620090 7_3:+46455690 Msa1106500:CDS
CCTAGAATCATAGCAAGAGA+AGG 0.620406 7_3:+46453318 Msa1106500:CDS
TTGGGAAGATCAGAAGGTGG+AGG 0.621221 7_3:-46455738 None:intergenic
TTAAGCTCAAGGTTCTGCCA+GGG 0.623008 7_3:+46454336 Msa1106500:CDS
ATCAGCATCAACAACAAGGA+GGG 0.625793 7_3:-46454429 None:intergenic
AAGAACCTCATGGTAAAGAG+TGG 0.626693 7_3:+46455025 Msa1106500:CDS
GTGTAGTTGAATTTAACAGG+TGG 0.628022 7_3:-46454989 None:intergenic
GTAGTGTTGTCAAAAGATGC+AGG 0.628447 7_3:-46454587 None:intergenic
ATTATCTGCAAGGAATCTCA+AGG 0.628550 7_3:-46455272 None:intergenic
TTTGCCATACAATACCAAAG+TGG 0.637822 7_3:+46455063 Msa1106500:CDS
AACACCACCAAAGAACCTCA+TGG 0.647380 7_3:+46455015 Msa1106500:CDS
TAGTTCCACTCTTTACCATG+AGG 0.649778 7_3:-46455030 None:intergenic
AACATTCACTTTCAAACACT+AGG 0.651706 7_3:+46454636 Msa1106500:CDS
ATTACAAAAGTTATGAGTGG+AGG 0.652167 7_3:+46455981 Msa1106500:three_prime_UTR
TTAGCTGAACAGTTGTGGAG+AGG 0.652791 7_3:-46454034 None:intergenic
AACATTGTACTCATCACACC+AGG 0.654689 7_3:+46454479 Msa1106500:CDS
CAAAACATGTTAGAACAACA+AGG 0.655120 7_3:+46453120 Msa1106500:CDS
AGTTGTGGAGAGGACCTGGA+AGG 0.656665 7_3:-46454024 None:intergenic
TAAATCAAGCAACACAAACA+GGG 0.673294 7_3:+46453963 Msa1106500:CDS
CATCAGCATCAACAACAAGG+AGG 0.690549 7_3:-46454430 None:intergenic
TAGGACAAAGAGGAACATTG+TGG 0.704760 7_3:+46453686 Msa1106500:CDS
CATTTGGGAAGATCAGAAGG+TGG 0.714474 7_3:-46455741 None:intergenic
TGGAAACATTGTACTGAACG+TGG 0.733878 7_3:-46453368 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTAAGTATATACTAA+CGG - chr7_3:46453547-46453566 None:intergenic 10.0%
!!! AAATTTTGATAAAAAATTTC+AGG + chr7_3:46453560-46453579 Msa1106500:intron 10.0%
!! AAATAAAAACTTACATAATT+TGG + chr7_3:46455547-46455566 Msa1106500:intron 10.0%
!! AAAATTATACTAGATATGAT+TGG - chr7_3:46453459-46453478 None:intergenic 15.0%
!! TTAATTTACCTAATACAATT+GGG - chr7_3:46453816-46453835 None:intergenic 15.0%
!! AATGAAAATAATCACTAATA+TGG - chr7_3:46454277-46454296 None:intergenic 15.0%
!!! TCATTATTCATTTTGTATTT+AGG + chr7_3:46456026-46456045 Msa1106500:three_prime_UTR 15.0%
!! AGGAAAATTGAAAAATTGAA+TGG - chr7_3:46453218-46453237 None:intergenic 20.0%
!! AATTGTATAATACCAATGAA+TGG - chr7_3:46453391-46453410 None:intergenic 20.0%
!! CTTAATTTACCTAATACAAT+TGG - chr7_3:46453817-46453836 None:intergenic 20.0%
!!! AATTTGTGACATATTTTGAT+TGG - chr7_3:46453841-46453860 None:intergenic 20.0%
!!! ACACTTTTAATCTAATTTGT+TGG - chr7_3:46454072-46454091 None:intergenic 20.0%
!!! TCGTTTTGTGAAAATAATTT+TGG + chr7_3:46454163-46454182 Msa1106500:intron 20.0%
!! GTTAAAAATTGTTTCATTCA+GGG + chr7_3:46455439-46455458 Msa1106500:intron 20.0%
!! TTGGACATTATTAATGAATT+AGG - chr7_3:46455480-46455499 None:intergenic 20.0%
!!! ATTAATAATGTCCAACTTTT+TGG + chr7_3:46455485-46455504 Msa1106500:intron 20.0%
!!! AACTTACATAATTTGGATTT+TGG + chr7_3:46455554-46455573 Msa1106500:intron 20.0%
!!! TCTAAATCTTTTCAACATTT+GGG - chr7_3:46455759-46455778 None:intergenic 20.0%
!!! ATCTAAATCTTTTCAACATT+TGG - chr7_3:46455760-46455779 None:intergenic 20.0%
!! ACAAAAAAAAACAAAGAATG+TGG - chr7_3:46455860-46455879 None:intergenic 20.0%
! TCAAAGAAAACAATTGAAAG+AGG + chr7_3:46452977-46452996 Msa1106500:five_prime_UTR 25.0%
! AAAACAATTGAAAGAGGAAA+TGG + chr7_3:46452983-46453002 Msa1106500:exon 25.0%
! GTCACAAATAAAAAAGATCA+TGG - chr7_3:46453183-46453202 None:intergenic 25.0%
! TTGATAAAAAATTTCAGGCA+CGG + chr7_3:46453565-46453584 Msa1106500:intron 25.0%
! AAACAAATCCCAATTGTATT+AGG + chr7_3:46453805-46453824 Msa1106500:CDS 25.0%
! GTATATTAACTCTGATAACA+TGG + chr7_3:46453903-46453922 Msa1106500:intron 25.0%
!! AGTACAATGTTTGTTCTAAA+GGG - chr7_3:46454470-46454489 None:intergenic 25.0%
!!! TTTTGGATTTGGTTTTAAGA+AGG - chr7_3:46454520-46454539 None:intergenic 25.0%
!! AAGATAGTGTCATTGAATTT+AGG - chr7_3:46454701-46454720 None:intergenic 25.0%
! CATTTCTTCAACAAATCAAA+AGG + chr7_3:46454938-46454957 Msa1106500:CDS 25.0%
! GGTTAAAAATTGTTTCATTC+AGG + chr7_3:46455438-46455457 Msa1106500:intron 25.0%
! ATATGATGTAACCAAAAAGT+TGG - chr7_3:46455499-46455518 None:intergenic 25.0%
!! AGTTCTAGCTAATCTAAAAA+TGG - chr7_3:46455804-46455823 None:intergenic 25.0%
!!! ATTTTTAGATTAGCTAGAAC+TGG + chr7_3:46455803-46455822 Msa1106500:three_prime_UTR 25.0%
!! CGAAAAAAAGAAGAAAGTTT+TGG + chr7_3:46455916-46455935 Msa1106500:three_prime_UTR 25.0%
!!! GAGGTTGATGTTTTTTGATT+TGG - chr7_3:46452938-46452957 None:intergenic 30.0%
AGCTCTTTAACTAGAAATTG+AGG - chr7_3:46452957-46452976 None:intergenic 30.0%
CAAAACATGTTAGAACAACA+AGG + chr7_3:46453120-46453139 Msa1106500:CDS 30.0%
TTGCAATTTGATCTGTACAA+AGG - chr7_3:46453238-46453257 None:intergenic 30.0%
AGTACAATGTTTCCATTCAT+TGG + chr7_3:46453376-46453395 Msa1106500:CDS 30.0%
GTGTACAACTTCAAAATCAT+AGG + chr7_3:46453667-46453686 Msa1106500:CDS 30.0%
TTCAAAATCATAGGACAAAG+AGG + chr7_3:46453676-46453695 Msa1106500:CDS 30.0%
!! TTTTTGGGAAGAATGACAAT+AGG - chr7_3:46453754-46453773 None:intergenic 30.0%
! ACAATTGGGATTTGTTTGAA+AGG - chr7_3:46453802-46453821 None:intergenic 30.0%
TTAACTCTGATAACATGGTT+AGG + chr7_3:46453908-46453927 Msa1106500:intron 30.0%
TAACTCTGATAACATGGTTA+GGG + chr7_3:46453909-46453928 Msa1106500:intron 30.0%
ATAAATCAAGCAACACAAAC+AGG + chr7_3:46453962-46453981 Msa1106500:CDS 30.0%
TAAATCAAGCAACACAAACA+GGG + chr7_3:46453963-46453982 Msa1106500:CDS 30.0%
ATCACTAATATGGTTTCGAA+TGG - chr7_3:46454267-46454286 None:intergenic 30.0%
GAGTACAATGTTTGTTCTAA+AGG - chr7_3:46454471-46454490 None:intergenic 30.0%
!!! TTTGGTTTTAAGAAGGACAT+TGG - chr7_3:46454513-46454532 None:intergenic 30.0%
!!! AAATTTGGCATTTGGTGTTT+TGG - chr7_3:46454537-46454556 None:intergenic 30.0%
TCTTGAAGCTATGACAAATT+TGG - chr7_3:46454552-46454571 None:intergenic 30.0%
AACATTCACTTTCAAACACT+AGG + chr7_3:46454636-46454655 Msa1106500:CDS 30.0%
! TCATTGAATTTAGGAAGTGT+TGG - chr7_3:46454692-46454711 None:intergenic 30.0%
!! TTTTTCTTCACAGTTGGTTT+AGG + chr7_3:46454803-46454822 Msa1106500:CDS 30.0%
!! AATTTAACAGGTGGATTAGA+AGG - chr7_3:46454983-46455002 None:intergenic 30.0%
TTAAAACCATGAAGATGCAA+TGG - chr7_3:46455133-46455152 None:intergenic 30.0%
!!! GGTTTTAACTTCTTCATTGT+TGG + chr7_3:46455145-46455164 Msa1106500:CDS 30.0%
TCAACCAAATTGAACTTAGA+AGG - chr7_3:46455205-46455224 None:intergenic 30.0%
!!! ATTTTTTGTTCTTAACCGTC+CGG + chr7_3:46455371-46455390 Msa1106500:intron 30.0%
AACCAGACTTTACTTATCTA+CGG - chr7_3:46455422-46455441 None:intergenic 30.0%
! GTAGTGATTGTTTTCTTGTA+AGG + chr7_3:46455950-46455969 Msa1106500:three_prime_UTR 30.0%
CTCATTACAAAAGTTATGAG+TGG + chr7_3:46455978-46455997 Msa1106500:three_prime_UTR 30.0%
ATTACAAAAGTTATGAGTGG+AGG + chr7_3:46455981-46456000 Msa1106500:three_prime_UTR 30.0%
TGATTGTGTTATGTGCTTTG+TGG + chr7_3:46453048-46453067 Msa1106500:CDS 35.0%
CAGTTACAATGCTCTTTGTT+TGG - chr7_3:46453278-46453297 None:intergenic 35.0%
!! AAGAGCATTGTAACTGTCAA+TGG + chr7_3:46453282-46453301 Msa1106500:CDS 35.0%
AACTGTCAATGGACAATTTC+CGG + chr7_3:46453293-46453312 Msa1106500:CDS 35.0%
TTGTACACATAACTTTGTCC+TGG - chr7_3:46453655-46453674 None:intergenic 35.0%
GGTATCATGCACATATTTCA+TGG + chr7_3:46453707-46453726 Msa1106500:CDS 35.0%
! GGATTTGTTTGAAAGGATGA+GGG - chr7_3:46453795-46453814 None:intergenic 35.0%
AACTCTGATAACATGGTTAG+GGG + chr7_3:46453910-46453929 Msa1106500:intron 35.0%
GTTCAACACTGACATAGATA+TGG - chr7_3:46454218-46454237 None:intergenic 35.0%
!! CTTAAAGGTATCTGCACAAA+TGG - chr7_3:46454321-46454340 None:intergenic 35.0%
! CTTAGTAGATATGTTTTCCC+TGG - chr7_3:46454356-46454375 None:intergenic 35.0%
GCTATGACAAATTTGGCATT+TGG - chr7_3:46454545-46454564 None:intergenic 35.0%
TTTGACAACACTACAGCAAT+TGG + chr7_3:46454596-46454615 Msa1106500:CDS 35.0%
!! GAAGAAAAAGTGCTTGTCAA+CGG - chr7_3:46454792-46454811 None:intergenic 35.0%
!!! AAGCACTTTTTCTTCACAGT+TGG + chr7_3:46454797-46454816 Msa1106500:CDS 35.0%
TCAAAAAACCAAGCATGTCA+AGG + chr7_3:46454839-46454858 Msa1106500:CDS 35.0%
GTGTAGTTGAATTTAACAGG+TGG - chr7_3:46454992-46455011 None:intergenic 35.0%
CCAGTGTAGTTGAATTTAAC+AGG - chr7_3:46454995-46455014 None:intergenic 35.0%
CCTGTTAAATTCAACTACAC+TGG + chr7_3:46454992-46455011 Msa1106500:CDS 35.0%
TTTGCCATACAATACCAAAG+TGG + chr7_3:46455063-46455082 Msa1106500:CDS 35.0%
AACTCCACTTTGGTATTGTA+TGG - chr7_3:46455070-46455089 None:intergenic 35.0%
ATACAATACCAAAGTGGAGT+TGG + chr7_3:46455069-46455088 Msa1106500:CDS 35.0%
TTGCAGGATACAAGTATTCT+TGG + chr7_3:46455094-46455113 Msa1106500:CDS 35.0%
AACTTCTTCATTGTTGGTCA+AGG + chr7_3:46455151-46455170 Msa1106500:CDS 35.0%
TTCATTGTTGGTCAAGGAAA+TGG + chr7_3:46455157-46455176 Msa1106500:CDS 35.0%
ACTTAGAAGGATCCTTTCTA+GGG - chr7_3:46455192-46455211 None:intergenic 35.0%
AACTTAGAAGGATCCTTTCT+AGG - chr7_3:46455193-46455212 None:intergenic 35.0%
GGATCCTTCTAAGTTCAATT+TGG + chr7_3:46455198-46455217 Msa1106500:CDS 35.0%
ATTTGGTTGATCCTGTTGAA+AGG + chr7_3:46455215-46455234 Msa1106500:CDS 35.0%
ATTATCTGCAAGGAATCTCA+AGG - chr7_3:46455275-46455294 None:intergenic 35.0%
! TATTTAAAATGTTGCCCACC+TGG - chr7_3:46455298-46455317 None:intergenic 35.0%
! TTACTTATCTACGGATTACC+TGG - chr7_3:46455413-46455432 None:intergenic 35.0%
ATCCGTAGATAAGTAAAGTC+TGG + chr7_3:46455417-46455436 Msa1106500:intron 35.0%
!! GTTGATGATATATCATGAGC+AGG + chr7_3:46455615-46455634 Msa1106500:intron 35.0%
ATATATCATGAGCAGGTGTT+TGG + chr7_3:46455622-46455641 Msa1106500:intron 35.0%
! CTGGATTTGATTCTGTTTCT+TGG + chr7_3:46455822-46455841 Msa1106500:three_prime_UTR 35.0%
ACTGTCAATGGACAATTTCC+GGG + chr7_3:46453294-46453313 Msa1106500:CDS 40.0%
! CCTTCTCTTGCTATGATTCT+AGG - chr7_3:46453321-46453340 None:intergenic 40.0%
CCTAGAATCATAGCAAGAGA+AGG + chr7_3:46453318-46453337 Msa1106500:CDS 40.0%
TGGAAACATTGTACTGAACG+TGG - chr7_3:46453371-46453390 None:intergenic 40.0%
TACATGCACAAATGTCTGCT+TGG + chr7_3:46453485-46453504 Msa1106500:intron 40.0%
!! TTCGTCAAGTAAGAAGTGCT+TGG + chr7_3:46453590-46453609 Msa1106500:CDS 40.0%
!! TCGTCAAGTAAGAAGTGCTT+GGG + chr7_3:46453591-46453610 Msa1106500:CDS 40.0%
GGACATTGCGTTATATATGC+AGG - chr7_3:46453625-46453644 None:intergenic 40.0%
TAACTTTGTCCTGGCTGAAT+TGG - chr7_3:46453646-46453665 None:intergenic 40.0%
TAGGACAAAGAGGAACATTG+TGG + chr7_3:46453686-46453705 Msa1106500:CDS 40.0%
TGGCTTAGATCTACTCTTCA+TGG + chr7_3:46453727-46453746 Msa1106500:CDS 40.0%
!! GGATAAGGCACATGCTTTTT+GGG - chr7_3:46453769-46453788 None:intergenic 40.0%
! TGGATAAGGCACATGCTTTT+TGG - chr7_3:46453770-46453789 None:intergenic 40.0%
AAAGGATGAGGGAATGGATA+AGG - chr7_3:46453784-46453803 None:intergenic 40.0%
TGTTTGAAAGGATGAGGGAA+TGG - chr7_3:46453790-46453809 None:intergenic 40.0%
! GGGATTTGTTTGAAAGGATG+AGG - chr7_3:46453796-46453815 None:intergenic 40.0%
TACCTTTAGCTGAACAGTTG+TGG - chr7_3:46454042-46454061 None:intergenic 40.0%
CACATATGTTAGTGTCGTGT+CGG - chr7_3:46454127-46454146 None:intergenic 40.0%
TGCAGATACCTTTAAGCTCA+AGG + chr7_3:46454325-46454344 Msa1106500:intron 40.0%
ATCAGCATCAACAACAAGGA+GGG - chr7_3:46454432-46454451 None:intergenic 40.0%
AACATTGTACTCATCACACC+AGG + chr7_3:46454479-46454498 Msa1106500:CDS 40.0%
! TAAGAAGGACATTGGTGGTT+TGG - chr7_3:46454505-46454524 None:intergenic 40.0%
!!! GGTTTTAAGAAGGACATTGG+TGG - chr7_3:46454510-46454529 None:intergenic 40.0%
!!! GGCATTTGGTGTTTTGGATT+TGG - chr7_3:46454531-46454550 None:intergenic 40.0%
GTAGTGTTGTCAAAAGATGC+AGG - chr7_3:46454590-46454609 None:intergenic 40.0%
! CACTACAGCAATTGGTTTCT+TGG + chr7_3:46454604-46454623 Msa1106500:CDS 40.0%
! AAGTGCTTGTCAACGGTTTT+CGG - chr7_3:46454785-46454804 None:intergenic 40.0%
TATTAGGTCCTTGACATGCT+TGG - chr7_3:46454850-46454869 None:intergenic 40.0%
! GCTGCTACTCTTGTGTTATT+AGG - chr7_3:46454866-46454885 None:intergenic 40.0%
GCTTGAAGTAAAGCAGTGTT+TGG - chr7_3:46454917-46454936 None:intergenic 40.0%
TTTACCATGAGGTTCTTTGG+TGG - chr7_3:46455022-46455041 None:intergenic 40.0%
CTCTTTACCATGAGGTTCTT+TGG - chr7_3:46455025-46455044 None:intergenic 40.0%
AAGAACCTCATGGTAAAGAG+TGG + chr7_3:46455025-46455044 Msa1106500:CDS 40.0%
TAGTTCCACTCTTTACCATG+AGG - chr7_3:46455033-46455052 None:intergenic 40.0%
CATGGTAAAGAGTGGAACTA+AGG + chr7_3:46455033-46455052 Msa1106500:CDS 40.0%
AGTCATCCATTGCATCTTCA+TGG + chr7_3:46455124-46455143 Msa1106500:CDS 40.0%
TGGAAACTTTGACCCTAGAA+AGG + chr7_3:46455177-46455196 Msa1106500:CDS 40.0%
AGATTCCTTGCAGATAATCC+AGG + chr7_3:46455277-46455296 Msa1106500:CDS 40.0%
AACTTGTGTGCACTTCAAGA+TGG - chr7_3:46455659-46455678 None:intergenic 40.0%
ATCTTGAAGTGCACACAAGT+TGG + chr7_3:46455658-46455677 Msa1106500:CDS 40.0%
TCTTGAAGTGCACACAAGTT+GGG + chr7_3:46455659-46455678 Msa1106500:CDS 40.0%
! CACAAGTTGGGGATTGAAAA+TGG + chr7_3:46455671-46455690 Msa1106500:CDS 40.0%
CAACATTTGGGAAGATCAGA+AGG - chr7_3:46455747-46455766 None:intergenic 40.0%
!! TGAGTGGAGGAGTTTTATGA+AGG + chr7_3:46455994-46456013 Msa1106500:three_prime_UTR 40.0%
!! CTTGCTATGATTCTAGGACC+CGG - chr7_3:46453315-46453334 None:intergenic 45.0%
TGATAACATGGTTAGGGGAG+TGG + chr7_3:46453915-46453934 Msa1106500:intron 45.0%
!! ATTGATGGTGTGAGCATCTG+AGG - chr7_3:46454002-46454021 None:intergenic 45.0%
TCAGATGCTCACACCATCAA+TGG + chr7_3:46454001-46454020 Msa1106500:CDS 45.0%
TTAGCTGAACAGTTGTGGAG+AGG - chr7_3:46454037-46454056 None:intergenic 45.0%
CTCCACAACTGTTCAGCTAA+AGG + chr7_3:46454037-46454056 Msa1106500:CDS 45.0%
AAGTGTGTCTAGTATCCGAC+AGG + chr7_3:46454086-46454105 Msa1106500:intron 45.0%
AGATGTGTCAGTGTTGTGTC+TGG + chr7_3:46454189-46454208 Msa1106500:intron 45.0%
TGGCAGAACCTTGAGCTTAA+AGG - chr7_3:46454336-46454355 None:intergenic 45.0%
TTTAAGCTCAAGGTTCTGCC+AGG + chr7_3:46454335-46454354 Msa1106500:CDS 45.0%
TTAAGCTCAAGGTTCTGCCA+GGG + chr7_3:46454336-46454355 Msa1106500:CDS 45.0%
CATCAGCATCAACAACAAGG+AGG - chr7_3:46454433-46454452 None:intergenic 45.0%
CAGCATCAGCATCAACAACA+AGG - chr7_3:46454436-46454455 None:intergenic 45.0%
GCTTCAAGACCTTATGCTAC+AGG + chr7_3:46454563-46454582 Msa1106500:CDS 45.0%
! CGGTTTTCGGAACTTTTGCT+GGG - chr7_3:46454772-46454791 None:intergenic 45.0%
! ACGGTTTTCGGAACTTTTGC+TGG - chr7_3:46454773-46454792 None:intergenic 45.0%
AACACCACCAAAGAACCTCA+TGG + chr7_3:46455015-46455034 Msa1106500:CDS 45.0%
TTCCTTGCAGATAATCCAGG+TGG + chr7_3:46455280-46455299 Msa1106500:intron 45.0%
TCCTTGCAGATAATCCAGGT+GGG + chr7_3:46455281-46455300 Msa1106500:intron 45.0%
CTTGAAGTGCACACAAGTTG+GGG + chr7_3:46455660-46455679 Msa1106500:CDS 45.0%
GTTGGGGATTGAAAATGGCA+TGG + chr7_3:46455676-46455695 Msa1106500:CDS 45.0%
! GAAAATGGCATGGATTGTCC+AGG + chr7_3:46455686-46455705 Msa1106500:CDS 45.0%
GGATTGTCCAGGATGGAAAA+CGG + chr7_3:46455697-46455716 Msa1106500:CDS 45.0%
CATTTGGGAAGATCAGAAGG+TGG - chr7_3:46455744-46455763 None:intergenic 45.0%
!!! ATATTTATTGATTAAAATAA+TGG - chr7_3:46455328-46455347 None:intergenic 5.0%
TGTCTTGCATGTGCTAGCTC+TGG - chr7_3:46453080-46453099 None:intergenic 50.0%
CGACAGAGTCATCGTGAAAG+TGG + chr7_3:46453341-46453360 Msa1106500:CDS 50.0%
!! GTAAGAAGTGCTTGGGCAGA+TGG + chr7_3:46453598-46453617 Msa1106500:CDS 50.0%
ACGCAATGTCCAATTCAGCC+AGG + chr7_3:46453634-46453653 Msa1106500:CDS 50.0%
TAACATGGTTAGGGGAGTGG+TGG + chr7_3:46453918-46453937 Msa1106500:intron 50.0%
! GTGTGAGCATCTGAGGTGTT+AGG - chr7_3:46453995-46454014 None:intergenic 50.0%
TGTTGGAGACTGGTACCTGT+CGG - chr7_3:46454104-46454123 None:intergenic 50.0%
! TGTTAGTGTCGTGTCGGTGT+TGG - chr7_3:46454121-46454140 None:intergenic 50.0%
GATGCAGGACCTGTAGCATA+AGG - chr7_3:46454575-46454594 None:intergenic 50.0%
CTGCAACACCAACTCCACTT+TGG - chr7_3:46455080-46455099 None:intergenic 50.0%
!! CAAAGTGGAGTTGGTGTTGC+AGG + chr7_3:46455078-46455097 Msa1106500:CDS 50.0%
CCAGCAGTGTTCCTTTCAAC+AGG - chr7_3:46455229-46455248 None:intergenic 50.0%
CCTGTTGAAAGGAACACTGC+TGG + chr7_3:46455226-46455245 Msa1106500:CDS 50.0%
AACACTGCTGGTGTTCCATC+TGG + chr7_3:46455238-46455257 Msa1106500:CDS 50.0%
! ATGGCATGGATTGTCCAGGA+TGG + chr7_3:46455690-46455709 Msa1106500:CDS 50.0%
TTGGGAAGATCAGAAGGTGG+AGG - chr7_3:46455741-46455760 None:intergenic 50.0%
CACACCATCAATGGCCTTCC+AGG + chr7_3:46454010-46454029 Msa1106500:CDS 55.0%
AGGACCTGGAAGGCCATTGA+TGG - chr7_3:46454017-46454036 None:intergenic 55.0%
AGTTGTGGAGAGGACCTGGA+AGG - chr7_3:46454027-46454046 None:intergenic 55.0%
GAACAGTTGTGGAGAGGACC+TGG - chr7_3:46454031-46454050 None:intergenic 55.0%
! AGGACATTGGTGGTTTGGCC+TGG - chr7_3:46454500-46454519 None:intergenic 55.0%
ACTGCTGGTGTTCCATCTGG+TGG + chr7_3:46455241-46455260 Msa1106500:CDS 55.0%
CTGGTGTTCCATCTGGTGGA+TGG + chr7_3:46455245-46455264 Msa1106500:CDS 55.0%
AAGGCAAGCCATCCACCAGA+TGG - chr7_3:46455256-46455275 None:intergenic 55.0%
GCCCACCTGGATTATCTGCA+AGG - chr7_3:46455285-46455304 None:intergenic 55.0%
TACCTGGCTCCTTGTCCTCT+GGG - chr7_3:46455397-46455416 None:intergenic 55.0%
TTACCTGGCTCCTTGTCCTC+TGG - chr7_3:46455398-46455417 None:intergenic 55.0%
!! GATTGCGCCGTTTTCCATCC+TGG - chr7_3:46455707-46455726 None:intergenic 55.0%
GGAAGATCAGAAGGTGGAGG+TGG - chr7_3:46455738-46455757 None:intergenic 55.0%
!! GTCGTGTCGGTGTTGGAGAC+TGG - chr7_3:46454114-46454133 None:intergenic 60.0%
TTCTTAACCGTCCGGCCCAG+AGG + chr7_3:46455379-46455398 Msa1106500:intron 60.0%
TCCTTGTCCTCTGGGCCGGA+CGG - chr7_3:46455389-46455408 None:intergenic 65.0%
TGGCTCCTTGTCCTCTGGGC+CGG - chr7_3:46455393-46455412 None:intergenic 65.0%
ACCGTCCGGCCCAGAGGACA+AGG + chr7_3:46455385-46455404 Msa1106500:intron 70.0%
GGCCCAGAGGACAAGGAGCC+AGG + chr7_3:46455392-46455411 Msa1106500:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 46452870 46456132 46452870 ID=Msa1106500;Name=Msa1106500
chr7_3 mRNA 46452870 46456132 46452870 ID=Msa1106500-mRNA-1;Parent=Msa1106500;Name=Msa1106500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=132|1|1|1|1|1|6|365|593
chr7_3 exon 46452870 46453157 46452870 ID=Msa1106500-mRNA-1:exon:9513;Parent=Msa1106500-mRNA-1
chr7_3 exon 46453246 46453397 46453246 ID=Msa1106500-mRNA-1:exon:9514;Parent=Msa1106500-mRNA-1
chr7_3 exon 46453582 46453826 46453582 ID=Msa1106500-mRNA-1:exon:9515;Parent=Msa1106500-mRNA-1
chr7_3 exon 46453930 46454058 46453930 ID=Msa1106500-mRNA-1:exon:9516;Parent=Msa1106500-mRNA-1
chr7_3 exon 46454330 46455298 46454330 ID=Msa1106500-mRNA-1:exon:9517;Parent=Msa1106500-mRNA-1
chr7_3 exon 46455637 46456132 46455637 ID=Msa1106500-mRNA-1:exon:9518;Parent=Msa1106500-mRNA-1
chr7_3 five_prime_UTR 46452870 46453001 46452870 ID=Msa1106500-mRNA-1:five_prime_utr;Parent=Msa1106500-mRNA-1
chr7_3 CDS 46453002 46453157 46453002 ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3 CDS 46453246 46453397 46453246 ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3 CDS 46453582 46453826 46453582 ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3 CDS 46453930 46454058 46453930 ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3 CDS 46454330 46455298 46454330 ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3 CDS 46455637 46455767 46455637 ID=Msa1106500-mRNA-1:cds;Parent=Msa1106500-mRNA-1
chr7_3 three_prime_UTR 46455768 46456132 46455768 ID=Msa1106500-mRNA-1:three_prime_utr;Parent=Msa1106500-mRNA-1
Gene Sequence

>Msa1106500

ATGGATTTTGCTTATATCAAAATGTCAAGCTTCATGAGAGCTATGTTGATTGTGTTATGTGCTTTGTGGATATTGCCAGAGCTAGCACATGCAAGACATGTTAGAACAACAAGTCATGCAAAACATGTTAGAACAACAAGGCATTACAAGTTTAACATCAAATTGCAAAATGTCACAAGACTTTGCCAAACAAAGAGCATTGTAACTGTCAATGGACAATTTCCGGGTCCTAGAATCATAGCAAGAGAAGGCGACAGAGTCATCGTGAAAGTGGTTAACCACGTTCAGTACAATGTTTCCATTCATTGGCACGGAATTCGTCAAGTAAGAAGTGCTTGGGCAGATGGACCTGCATATATAACGCAATGTCCAATTCAGCCAGGACAAAGTTATGTGTACAACTTCAAAATCATAGGACAAAGAGGAACATTGTGGTATCATGCACATATTTCATGGCTTAGATCTACTCTTCATGGTCCTATTGTCATTCTTCCCAAAAAGCATGTGCCTTATCCATTCCCTCATCCTTTCAAACAAATCCCAATTGTATTAGGGGAGTGGTGGAAAGCAGACACAGAAGCAGTTATAAATCAAGCAACACAAACAGGGTTAGCACCTAACACCTCAGATGCTCACACCATCAATGGCCTTCCAGGTCCTCTCCACAACTGTTCAGCTAAAGATACCTTTAAGCTCAAGGTTCTGCCAGGGAAAACATATCTACTAAGAATAATCAATGCTGCACTCAATGATGAGATGTTCTTTAGCATTGCTAATCACACCCTCCTTGTTGTTGATGCTGATGCTGTTTATGTAAAGCCCTTTAGAACAAACATTGTACTCATCACACCAGGCCAAACCACCAATGTCCTTCTTAAAACCAAATCCAAAACACCAAATGCCAAATTTGTCATAGCTTCAAGACCTTATGCTACAGGTCCTGCATCTTTTGACAACACTACAGCAATTGGTTTCTTGGAATACAAGAAACATTCACTTTCAAACACTAGGTCAAAAAACAAAACTGTTAAACTTTTTAGACCAACACTTCCTAAATTCAATGACACTATCTTTGCAATGAACTTCAACACGAAACTTCGTAGCTTGAACAGCAAGAAATTCCCAGCAAAAGTTCCGAAAACCGTTGACAAGCACTTTTTCTTCACAGTTGGTTTAGGTATTAGTCAATGTTCAAAAAACCAAGCATGTCAAGGACCTAATAACACAAGAGTAGCAGCAGCTATTAACAATGTTTCATTTGTGATGCCAAACACTGCTTTACTTCAAGCTCATTTCTTCAACAAATCAAAAGGAGTTTTCACTACTGATTTTCCTTCTAATCCACCTGTTAAATTCAACTACACTGGAACACCACCAAAGAACCTCATGGTAAAGAGTGGAACTAAGGTTGCAGTTTTGCCATACAATACCAAAGTGGAGTTGGTGTTGCAGGATACAAGTATTCTTGGTGCTGAGAGTCATCCATTGCATCTTCATGGTTTTAACTTCTTCATTGTTGGTCAAGGAAATGGAAACTTTGACCCTAGAAAGGATCCTTCTAAGTTCAATTTGGTTGATCCTGTTGAAAGGAACACTGCTGGTGTTCCATCTGGTGGATGGCTTGCCTTGAGATTCCTTGCAGATAATCCAGGTGTTTGGTTCATGCATTGCCATCTTGAAGTGCACACAAGTTGGGGATTGAAAATGGCATGGATTGTCCAGGATGGAAAACGGCGCAATCAGAAGCTGCCACCTCCACCTTCTGATCTTCCCAAATGTTGA
Protein sequence

>Msa1106500

MDFAYIKMSSFMRAMLIVLCALWILPELAHARHVRTTSHAKHVRTTRHYKFNIKLQNVTRLCQTKSIVTVNGQFPGPRIIAREGDRVIVKVVNHVQYNVSIHWHGIRQVRSAWADGPAYITQCPIQPGQSYVYNFKIIGQRGTLWYHAHISWLRSTLHGPIVILPKKHVPYPFPHPFKQIPIVLGEWWKADTEAVINQATQTGLAPNTSDAHTINGLPGPLHNCSAKDTFKLKVLPGKTYLLRIINAALNDEMFFSIANHTLLVVDADAVYVKPFRTNIVLITPGQTTNVLLKTKSKTPNAKFVIASRPYATGPASFDNTTAIGFLEYKKHSLSNTRSKNKTVKLFRPTLPKFNDTIFAMNFNTKLRSLNSKKFPAKVPKTVDKHFFFTVGLGISQCSKNQACQGPNNTRVAAAINNVSFVMPNTALLQAHFFNKSKGVFTTDFPSNPPVKFNYTGTPPKNLMVKSGTKVAVLPYNTKVELVLQDTSILGAESHPLHLHGFNFFIVGQGNGNFDPRKDPSKFNLVDPVERNTAGVPSGGWLALRFLADNPGVWFMHCHLEVHTSWGLKMAWIVQDGKRRNQKLPPPPSDLPKC*