Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169230 | XP_024625178.1 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169230 | sp|Q9ZQC6|IRX9_ARATH | 59.767 | 343 | 123 | 4 | 1 | 328 | 1 | 343 | 1.08e-143 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169230 | Q599J6 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa1169230 | 0.829881 | 4.017070e-55 | -8.615850e-47 |
| Msa0642950 | Msa1169230 | 0.820621 | 6.227392e-53 | -8.615850e-47 |
| Msa0667370 | Msa1169230 | 0.800731 | 1.256272e-48 | -8.615850e-47 |
| Msa0688820 | Msa1169230 | 0.867019 | 1.862855e-65 | -8.615850e-47 |
| Msa0818710 | Msa1169230 | 0.807357 | 5.258659e-50 | -8.615850e-47 |
| Msa0184680 | Msa1169230 | 0.836358 | 9.808072e-57 | -8.615850e-47 |
| Msa0193850 | Msa1169230 | 0.805366 | 1.382115e-49 | -8.615850e-47 |
| Msa0199960 | Msa1169230 | 0.808477 | 3.038520e-50 | -8.615850e-47 |
| Msa0389500 | Msa1169230 | 0.811677 | 6.213087e-51 | -8.615850e-47 |
| Msa0392380 | Msa1169230 | 0.848216 | 7.060566e-60 | -8.615850e-47 |
| Msa0440320 | Msa1169230 | 0.851150 | 1.070249e-60 | -8.615850e-47 |
| Msa0475290 | Msa1169230 | 0.809983 | 1.444432e-50 | -8.615850e-47 |
| Msa1037550 | Msa1169230 | 0.847590 | 1.050655e-59 | -8.615850e-47 |
| Msa1078930 | Msa1169230 | 0.955862 | 1.136220e-113 | -8.615850e-47 |
| Msa1106500 | Msa1169230 | 0.804668 | 1.934404e-49 | -8.615850e-47 |
| Msa0242490 | Msa1169230 | 0.818330 | 2.073513e-52 | -8.615850e-47 |
| Msa0243600 | Msa1169230 | 0.845869 | 3.103325e-59 | -8.615850e-47 |
| Msa0267660 | Msa1169230 | 0.801579 | 8.423155e-49 | -8.615850e-47 |
| Msa0274440 | Msa1169230 | 0.821924 | 3.117499e-53 | -8.615850e-47 |
| Msa0280690 | Msa1169230 | 0.819370 | 1.203823e-52 | -8.615850e-47 |
| Msa0282220 | Msa1169230 | 0.840957 | 6.357769e-58 | -8.615850e-47 |
| Msa0314170 | Msa1169230 | 0.823577 | 1.285504e-53 | -8.615850e-47 |
| Msa0319940 | Msa1169230 | 0.820958 | 5.208698e-53 | -8.615850e-47 |
| Msa1123930 | Msa1169230 | 0.959692 | 1.008174e-117 | -8.615850e-47 |
| Msa1130430 | Msa1169230 | 0.822157 | 2.753320e-53 | -8.615850e-47 |
| Msa1169230 | Msa1222590 | 0.815791 | 7.711961e-52 | -8.615850e-47 |
| Msa1169230 | Msa1264570 | 0.825717 | 4.024502e-54 | -8.615850e-47 |
| Msa1169230 | Msa1340700 | 0.842334 | 2.755481e-58 | -8.615850e-47 |
| Msa1169230 | Msa1426070 | 0.959225 | 3.301336e-117 | -8.615850e-47 |
| Msa1169230 | Msa1430750 | 0.811285 | 7.555820e-51 | -8.615850e-47 |
| Msa1169230 | Msa1436420 | 0.839987 | 1.140348e-57 | -8.615850e-47 |
| Msa1169230 | Msa1445050 | 0.817784 | 2.754943e-52 | -8.615850e-47 |
| Msa1169230 | Msa1446110 | 0.835893 | 1.286954e-56 | -8.615850e-47 |
| Msa0487500 | Msa1169230 | 0.863462 | 2.447156e-64 | -8.615850e-47 |
| Msa0601820 | Msa1169230 | 0.842821 | 2.046374e-58 | -8.615850e-47 |
| Msa0968350 | Msa1169230 | 0.956078 | 6.865911e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169230 | MtrunA17_Chr7g0263751 | 97.929 | 338 | 6 | 1 | 1 | 337 | 1 | 338 | 0.0 | 676 |
| Msa1169230 | MtrunA17_Chr3g0140951 | 48.035 | 229 | 110 | 3 | 103 | 324 | 187 | 413 | 1.44e-70 | 226 |
| Msa1169230 | MtrunA17_Chr3g0140001 | 35.817 | 349 | 195 | 9 | 3 | 328 | 70 | 412 | 9.70e-65 | 211 |
| Msa1169230 | MtrunA17_Chr5g0401811 | 25.362 | 276 | 164 | 8 | 100 | 336 | 147 | 419 | 9.22e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169230 | AT2G37090.1 | 59.767 | 343 | 123 | 4 | 1 | 328 | 1 | 343 | 1.10e-144 | 412 |
| Msa1169230 | AT1G27600.2 | 40.625 | 320 | 166 | 7 | 14 | 324 | 62 | 366 | 5.91e-74 | 234 |
| Msa1169230 | AT1G27600.1 | 40.625 | 320 | 166 | 7 | 14 | 324 | 62 | 366 | 5.91e-74 | 234 |
| Msa1169230 | AT5G67230.1 | 25.000 | 272 | 160 | 8 | 95 | 324 | 143 | 412 | 3.27e-16 | 79.7 |
Find 61 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGCTTTCTTCCATAAA+TGG | 0.140314 | 7_4:+62166029 | None:intergenic |
| GAAACGCCATAGCAAGATTT+TGG | 0.205672 | 7_4:+62163102 | None:intergenic |
| TGGCAGCACATATTTGTTAA+TGG | 0.245165 | 7_4:+62166208 | None:intergenic |
| CATTCAATAGCTCCATTCTC+TGG | 0.283106 | 7_4:-62164579 | Msa1169230:CDS |
| AGTGGGATTGTTCACTTTGC+TGG | 0.287605 | 7_4:-62165479 | Msa1169230:CDS |
| TGACAATTGAGCAGGGTCTT+TGG | 0.303432 | 7_4:-62164748 | Msa1169230:intron |
| AATAATAAAGTATATAGTTT+AGG | 0.313120 | 7_4:+62166177 | None:intergenic |
| ACTACTATACATCATATGTT+AGG | 0.313282 | 7_4:-62163037 | Msa1169230:three_prime_UTR |
| ACAAAAGCTAATATTTAGTT+TGG | 0.322846 | 7_4:-62166266 | Msa1169230:five_prime_UTR |
| CAGTGAAGAGTTCATGGACT+TGG | 0.355535 | 7_4:-62165561 | Msa1169230:CDS |
| TGTGACTCTTCTCAAGTCAT+TGG | 0.366016 | 7_4:-62164664 | Msa1169230:CDS |
| CTCTGGCAATTCAGTTGATT+CGG | 0.377196 | 7_4:+62165625 | None:intergenic |
| TTGGAGGTATTTCATATGTA+AGG | 0.398590 | 7_4:+62166289 | None:intergenic |
| CATTGCTTTCTTCCATAAAT+GGG | 0.399629 | 7_4:+62166030 | None:intergenic |
| CCAGAGATATTGAGGAAAAC+TGG | 0.401504 | 7_4:-62165608 | Msa1169230:CDS |
| GAATAAAATTGAGTAATTGT+TGG | 0.406917 | 7_4:+62166129 | None:intergenic |
| TGGCTATGGATTCTAGGTGC+TGG | 0.412979 | 7_4:+62165836 | None:intergenic |
| TTAGGCTTCAATTGAGGTAG+TGG | 0.414050 | 7_4:+62165776 | None:intergenic |
| TTCACAGGTTTAGCTCCAAC+AGG | 0.416327 | 7_4:-62165974 | Msa1169230:CDS |
| TTCTCTGGGACCCTGAGAGA+TGG | 0.425575 | 7_4:-62164564 | Msa1169230:CDS |
| GAAGTTCGACCCCATCTCTC+AGG | 0.437016 | 7_4:+62164553 | None:intergenic |
| TCTCTGGGACCCTGAGAGAT+GGG | 0.437280 | 7_4:-62164563 | Msa1169230:CDS |
| CTACTATACATCATATGTTA+GGG | 0.437935 | 7_4:-62163036 | Msa1169230:three_prime_UTR |
| GGGTCGAACTTCATCAGTTA+AGG | 0.438041 | 7_4:-62164542 | Msa1169230:CDS |
| AATATTAAAGATTTACCTGT+TGG | 0.438372 | 7_4:+62165959 | None:intergenic |
| ATCAGTTAAGGATACTTCTC+AGG | 0.448819 | 7_4:-62164530 | Msa1169230:intron |
| GGAAAACTGGTATCATGTAT+AGG | 0.455162 | 7_4:-62165595 | Msa1169230:CDS |
| TGAAATGTTGAGGTTATGAT+TGG | 0.461969 | 7_4:+62166238 | None:intergenic |
| TTGTTGATCAACCATTGCTT+TGG | 0.462201 | 7_4:-62165667 | Msa1169230:CDS |
| TAGAAACTAGTGCTTGGAAA+TGG | 0.464267 | 7_4:+62163060 | None:intergenic |
| TCTCTCAGGGTCCCAGAGAA+TGG | 0.466645 | 7_4:+62164567 | None:intergenic |
| CTGAATTGCCAGAGATATTG+AGG | 0.474651 | 7_4:-62165616 | Msa1169230:CDS |
| AGAAGATGGGTTCAGTAGAA+AGG | 0.478029 | 7_4:-62166066 | Msa1169230:exon |
| TGCAAAACTTGAAATATGAA+TGG | 0.482368 | 7_4:+62164600 | None:intergenic |
| AGAAGATGAGGCTAAGTTGA+AGG | 0.485965 | 7_4:-62163143 | Msa1169230:CDS |
| GCAAAACTTGAAATATGAAT+GGG | 0.488014 | 7_4:+62164601 | None:intergenic |
| ATATAGTTTAGGTGCATTTG+TGG | 0.488627 | 7_4:+62166188 | None:intergenic |
| ACTCAATATCTCTAAGCTGT+TGG | 0.489245 | 7_4:+62165426 | None:intergenic |
| ACTTGAGAAGAGTCACAAAC+TGG | 0.500366 | 7_4:+62164670 | None:intergenic |
| TGGAAACGTTTGAAATGTTG+AGG | 0.501044 | 7_4:+62166228 | None:intergenic |
| TATGAAAGCAACTCTTGTAC+TGG | 0.507724 | 7_4:+62162969 | None:intergenic |
| GAAGATCATAAACATTAGAA+AGG | 0.518111 | 7_4:+62165456 | None:intergenic |
| GTTGACATTTGAGAAGGTTG+TGG | 0.518182 | 7_4:+62165887 | None:intergenic |
| TTGGAACAGAATGAAGAGAA+GGG | 0.523187 | 7_4:+62166148 | None:intergenic |
| ATTCAATAGCTCCATTCTCT+GGG | 0.531877 | 7_4:-62164578 | Msa1169230:CDS |
| GTTGGAACAGAATGAAGAGA+AGG | 0.540184 | 7_4:+62166147 | None:intergenic |
| ATTGAGCATCATAGACTAAG+TGG | 0.544865 | 7_4:-62165497 | Msa1169230:CDS |
| AGTAGTTAGAAACTAGTGCT+TGG | 0.546140 | 7_4:+62163054 | None:intergenic |
| TTTGCAAGTAATAATGCCGT+TGG | 0.557119 | 7_4:+62164718 | None:intergenic |
| TGAGCAGGGTCTTTGGAACA+TGG | 0.563420 | 7_4:-62164741 | Msa1169230:intron |
| GCAAGTAGTTCTAGAAGATG+AGG | 0.569238 | 7_4:-62163155 | Msa1169230:CDS |
| ACTCTTCTCAAGTCATTGGA+TGG | 0.578421 | 7_4:-62164660 | Msa1169230:CDS |
| ACTGCTCCAAAATCTTGCTA+TGG | 0.580047 | 7_4:-62163108 | Msa1169230:CDS |
| GAAGATGAGGCTAAGTTGAA+GGG | 0.584310 | 7_4:-62163142 | Msa1169230:CDS |
| AAGTTCGACCCCATCTCTCA+GGG | 0.598644 | 7_4:+62164554 | None:intergenic |
| CTCTGGGACCCTGAGAGATG+GGG | 0.602550 | 7_4:-62164562 | Msa1169230:CDS |
| TCGACAACAATCCAAAGCAA+TGG | 0.628366 | 7_4:+62165656 | None:intergenic |
| TTGAGCATCATAGACTAAGT+GGG | 0.628829 | 7_4:-62165496 | Msa1169230:CDS |
| GGTCTTTGGAACATGGCCAA+CGG | 0.646193 | 7_4:-62164734 | Msa1169230:CDS |
| TACTATACATCATATGTTAG+GGG | 0.651812 | 7_4:-62163035 | Msa1169230:three_prime_UTR |
| TATACGGAAGACAATTACAA+AGG | 0.665200 | 7_4:+62162914 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAAGTATATAGTTT+AGG | + | chr7_4:62162922-62162941 | None:intergenic | 10.0% |
| !! | ACACTTAAAAAAAATTATAT+TGG | - | chr7_4:62164187-62164206 | Msa1169230:intron | 10.0% |
| !! | ATAAAAATAAAAATAAGTCA+AGG | + | chr7_4:62164704-62164723 | None:intergenic | 10.0% |
| !! | AATAAAAATGTTAAATAGTT+TGG | - | chr7_4:62165374-62165393 | Msa1169230:intron | 10.0% |
| !!! | CAAATAGTTTTTTTTTTTAA+TGG | - | chr7_4:62165420-62165439 | Msa1169230:intron | 10.0% |
| !! | ACACAAATAAAAAATATATA+CGG | + | chr7_4:62166201-62166220 | None:intergenic | 10.0% |
| !!! | TGATTATTTTTTTAACAAAA+AGG | - | chr7_4:62166286-62166305 | Msa1169230:five_prime_UTR | 10.0% |
| !! | AAAAATTTACCAAAAAATTC+AGG | + | chr7_4:62163001-62163020 | None:intergenic | 15.0% |
| !!! | AATAAACAACTTTTTTCAAT+TGG | - | chr7_4:62163858-62163877 | Msa1169230:intron | 15.0% |
| !! | ATATCAAAAACCAAATTTAT+TGG | + | chr7_4:62163990-62164009 | None:intergenic | 15.0% |
| !!! | TTTAATCTTCACAATATTTT+CGG | + | chr7_4:62164744-62164763 | None:intergenic | 15.0% |
| !! | AAAAATTGTCAAGTTTATAA+CGG | - | chr7_4:62165202-62165221 | Msa1169230:intron | 15.0% |
| !!! | ACTAAATATTAGCTTTTGTT+TGG | + | chr7_4:62162829-62162848 | None:intergenic | 20.0% |
| !! | ACAAAAGCTAATATTTAGTT+TGG | - | chr7_4:62162830-62162849 | Msa1169230:three_prime_UTR | 20.0% |
| !! | GAATAAAATTGAGTAATTGT+TGG | + | chr7_4:62162970-62162989 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTATGTTTTGTGA+TGG | - | chr7_4:62163094-62163113 | Msa1169230:CDS | 20.0% |
| !!! | TTTTCTTTATGTTTTGTGAT+GGG | - | chr7_4:62163095-62163114 | Msa1169230:CDS | 20.0% |
| !! | AATATTAAAGATTTACCTGT+TGG | + | chr7_4:62163140-62163159 | None:intergenic | 20.0% |
| !!! | CTCAAAAAAACATTTTGATA+AGG | + | chr7_4:62163386-62163405 | None:intergenic | 20.0% |
| !!! | AAATGTTTTTTTGAGAAGAT+TGG | - | chr7_4:62163391-62163410 | Msa1169230:intron | 20.0% |
| !!! | AATTAGTTTAGCAAATAGAA+GGG | + | chr7_4:62163708-62163727 | None:intergenic | 20.0% |
| !!! | AAATTAGTTTAGCAAATAGA+AGG | + | chr7_4:62163709-62163728 | None:intergenic | 20.0% |
| !!! | TGTTAATTTGTTATGTCTAA+TGG | - | chr7_4:62163759-62163778 | Msa1169230:intron | 20.0% |
| !! | TTAAAAAAAATGTAGCTAGT+AGG | - | chr7_4:62163822-62163841 | Msa1169230:intron | 20.0% |
| !! | AGTGTAGATATTTAACAATT+TGG | + | chr7_4:62164172-62164191 | None:intergenic | 20.0% |
| !! | AATGTTATAATTACACATCA+TGG | - | chr7_4:62164591-62164610 | Msa1169230:CDS | 20.0% |
| !! | ACAGTTAAATATATGAGTAA+TGG | + | chr7_4:62165152-62165171 | None:intergenic | 20.0% |
| !! | AAAATTGTCAAGTTTATAAC+GGG | - | chr7_4:62165203-62165222 | Msa1169230:intron | 20.0% |
| !!! | AAGCAATTTATTTGAGTTTA+GGG | + | chr7_4:62165251-62165270 | None:intergenic | 20.0% |
| !! | TCAAATACACTTATAAAGTT+AGG | - | chr7_4:62165270-62165289 | Msa1169230:intron | 20.0% |
| !! | AAAATGTTAAATAGTTTGGT+TGG | - | chr7_4:62165378-62165397 | Msa1169230:intron | 20.0% |
| !!! | TTTTTCCTTTTTAAAGTAGT+TGG | + | chr7_4:62165557-62165576 | None:intergenic | 20.0% |
| !!! | AATTGAGATATATCTAAAGT+AGG | + | chr7_4:62165740-62165759 | None:intergenic | 20.0% |
| !!! | AAATATTAGCTTTTGTTTGG+AGG | + | chr7_4:62162826-62162845 | None:intergenic | 25.0% |
| ! | ATTTACCAAAAAATTCAGGT+TGG | + | chr7_4:62162997-62163016 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTTCTTTAGAAGA+TGG | - | chr7_4:62163016-62163035 | Msa1169230:three_prime_UTR | 25.0% |
| !!! | TTTTTGCTTCTTTAGAAGAT+GGG | - | chr7_4:62163017-62163036 | Msa1169230:three_prime_UTR | 25.0% |
| ! | CAAAGAAAAAAACCCATTTA+TGG | - | chr7_4:62163054-62163073 | Msa1169230:exon | 25.0% |
| !!! | TTTTTTGTTGACATTTGAGA+AGG | + | chr7_4:62163218-62163237 | None:intergenic | 25.0% |
| ! | TCTCAAATGTCAACAAAAAA+TGG | - | chr7_4:62163218-62163237 | Msa1169230:intron | 25.0% |
| ! | CAAAAAATGGTAACAAAAGT+TGG | - | chr7_4:62163231-62163250 | Msa1169230:intron | 25.0% |
| !! | ACTATGATTAGAAGTCTTTT+AGG | + | chr7_4:62163341-62163360 | None:intergenic | 25.0% |
| ! | GAAGATCATAAACATTAGAA+AGG | + | chr7_4:62163643-62163662 | None:intergenic | 25.0% |
| !! | ATTAGTTTAGCAAATAGAAG+GGG | + | chr7_4:62163707-62163726 | None:intergenic | 25.0% |
| ! | CTACTAGCTACATTAAAATT+AGG | + | chr7_4:62163798-62163817 | None:intergenic | 25.0% |
| !!! | CTAATTTTAATGTAGCTAGT+AGG | - | chr7_4:62163796-62163815 | Msa1169230:intron | 25.0% |
| !!! | AACAACTTTTTTCAATTGGA+TGG | - | chr7_4:62163862-62163881 | Msa1169230:intron | 25.0% |
| !! | TTTTCAATTGGATGGAAAAA+AGG | - | chr7_4:62163870-62163889 | Msa1169230:intron | 25.0% |
| ! | TTTAGTGACACCAATAAATT+TGG | - | chr7_4:62163977-62163996 | Msa1169230:intron | 25.0% |
| !! | AATCATTCTAAAAACATCTC+AGG | - | chr7_4:62164058-62164077 | Msa1169230:intron | 25.0% |
| !!! | ATCACTTTAGTCTTTTTGAA+TGG | + | chr7_4:62164094-62164113 | None:intergenic | 25.0% |
| !! | TTTTTCTTTTCAAATCACCT+AGG | + | chr7_4:62164287-62164306 | None:intergenic | 25.0% |
| ! | AGAAAAAGAGTGATAATTGA+AGG | - | chr7_4:62164402-62164421 | Msa1169230:intron | 25.0% |
| ! | GCAAAACTTGAAATATGAAT+GGG | + | chr7_4:62164498-62164517 | None:intergenic | 25.0% |
| ! | TGCAAAACTTGAAATATGAA+TGG | + | chr7_4:62164499-62164518 | None:intergenic | 25.0% |
| ! | TATCAAAACCAAACTTCAAT+TGG | - | chr7_4:62164637-62164656 | Msa1169230:CDS | 25.0% |
| ! | AACATATACCAATTGAAGTT+TGG | + | chr7_4:62164648-62164667 | None:intergenic | 25.0% |
| ! | ATTTGAAGAAAAGTTGTATG+CGG | - | chr7_4:62164764-62164783 | Msa1169230:intron | 25.0% |
| ! | TTGCTTCAATAATAAAACTC+TGG | - | chr7_4:62164920-62164939 | Msa1169230:intron | 25.0% |
| ! | TGCTTCAATAATAAAACTCT+GGG | - | chr7_4:62164921-62164940 | Msa1169230:intron | 25.0% |
| !!! | TTCGCTTTTTTCAAATTTTG+AGG | + | chr7_4:62164986-62165005 | None:intergenic | 25.0% |
| ! | GTAAATTCCTATTTGTCTAT+GGG | - | chr7_4:62165109-62165128 | Msa1169230:intron | 25.0% |
| ! | TATGAGTAATGGCTTAAATA+GGG | + | chr7_4:62165141-62165160 | None:intergenic | 25.0% |
| ! | ATATGAGTAATGGCTTAAAT+AGG | + | chr7_4:62165142-62165161 | None:intergenic | 25.0% |
| ! | AAATTGTCAAGTTTATAACG+GGG | - | chr7_4:62165204-62165223 | Msa1169230:intron | 25.0% |
| !! | GAAGCAATTTATTTGAGTTT+AGG | + | chr7_4:62165252-62165271 | None:intergenic | 25.0% |
| ! | ATACACTTATAAAGTTAGGT+TGG | - | chr7_4:62165274-62165293 | Msa1169230:intron | 25.0% |
| ! | TTTGGTTGGATATATCTATT+TGG | - | chr7_4:62165392-62165411 | Msa1169230:intron | 25.0% |
| ! | AATAAAATTTCAAGCAGTGA+AGG | + | chr7_4:62165504-62165523 | None:intergenic | 25.0% |
| ! | TACGCAAGAATAAAAAAACT+AGG | - | chr7_4:62165580-62165599 | Msa1169230:CDS | 25.0% |
| ! | ACTACTATACATCATATGTT+AGG | - | chr7_4:62166059-62166078 | Msa1169230:CDS | 25.0% |
| ! | CTACTATACATCATATGTTA+GGG | - | chr7_4:62166060-62166079 | Msa1169230:CDS | 25.0% |
| ! | TACTATACATCATATGTTAG+GGG | - | chr7_4:62166061-62166080 | Msa1169230:CDS | 25.0% |
| !!! | ATTTTGTTAGCTTACGTAAA+AGG | - | chr7_4:62166227-62166246 | Msa1169230:five_prime_UTR | 25.0% |
| !! | TTGGAGGTATTTCATATGTA+AGG | + | chr7_4:62162810-62162829 | None:intergenic | 30.0% |
| TGAAATGTTGAGGTTATGAT+TGG | + | chr7_4:62162861-62162880 | None:intergenic | 30.0% | |
| ATATAGTTTAGGTGCATTTG+TGG | + | chr7_4:62162911-62162930 | None:intergenic | 30.0% | |
| CATTGCTTTCTTCCATAAAT+GGG | + | chr7_4:62163069-62163088 | None:intergenic | 30.0% | |
| AAAAAAATGTAGCTAGTAGG+TGG | - | chr7_4:62163825-62163844 | Msa1169230:intron | 30.0% | |
| AGGCTAGTAAGAAAATCTTT+AGG | - | chr7_4:62163890-62163909 | Msa1169230:intron | 30.0% | |
| TAATCATCATCACTAGTGTT+AGG | + | chr7_4:62163920-62163939 | None:intergenic | 30.0% | |
| AGTGTGAAATAAAATCACCT+AGG | + | chr7_4:62164263-62164282 | None:intergenic | 30.0% | |
| !! | GATTTTATTTCACACTTCCT+AGG | - | chr7_4:62164267-62164286 | Msa1169230:intron | 30.0% |
| TATTCATTTGACAATTGAGC+AGG | - | chr7_4:62164340-62164359 | Msa1169230:intron | 30.0% | |
| ATTCATTTGACAATTGAGCA+GGG | - | chr7_4:62164341-62164360 | Msa1169230:intron | 30.0% | |
| GCTTCAATAATAAAACTCTG+GGG | - | chr7_4:62164922-62164941 | Msa1169230:intron | 30.0% | |
| CGAAAAAAAACTTGTACCTA+CGG | - | chr7_4:62165002-62165021 | Msa1169230:intron | 30.0% | |
| !! | AGATATTTAGTGACGGATTT+CGG | + | chr7_4:62165028-62165047 | None:intergenic | 30.0% |
| CGGAAATAGATATTTAGTGA+CGG | + | chr7_4:62165035-62165054 | None:intergenic | 30.0% | |
| CACTAAATATCTATTTCCGT+AGG | - | chr7_4:62165036-62165055 | Msa1169230:intron | 30.0% | |
| GTCAATTATGCATTATCCAT+AGG | - | chr7_4:62165087-62165106 | Msa1169230:intron | 30.0% | |
| GACAAATAGGAATTTACCTA+TGG | + | chr7_4:62165106-62165125 | None:intergenic | 30.0% | |
| GGTAAATTCCTATTTGTCTA+TGG | - | chr7_4:62165108-62165127 | Msa1169230:intron | 30.0% | |
| !!! | CTTTTTAAAGTAGTTGGATG+AGG | + | chr7_4:62165551-62165570 | None:intergenic | 30.0% |
| ! | CTCATCCAACTACTTTAAAA+AGG | - | chr7_4:62165549-62165568 | Msa1169230:CDS | 30.0% |
| ! | ATGACATGTGATAATGCATT+TGG | - | chr7_4:62165691-62165710 | Msa1169230:CDS | 30.0% |
| ! | ATCTAAAGTAGGTTCTATCT+TGG | + | chr7_4:62165729-62165748 | None:intergenic | 30.0% |
| AAAATAGCAACAAAGCTCTT+AGG | + | chr7_4:62165863-62165882 | None:intergenic | 30.0% | |
| !!! | TGCTATTTTGTCCTAATTTG+AGG | - | chr7_4:62165874-62165893 | Msa1169230:CDS | 30.0% |
| AAAAGAAGTAGCCTCAAATT+AGG | + | chr7_4:62165888-62165907 | None:intergenic | 30.0% | |
| TATACGGAAGACAATTACAA+AGG | + | chr7_4:62166185-62166204 | None:intergenic | 30.0% | |
| ! | CTTCAAATGTTTTGCTTCAT+AGG | + | chr7_4:62166260-62166279 | None:intergenic | 30.0% |
| ! | TGGAAACGTTTGAAATGTTG+AGG | + | chr7_4:62162871-62162890 | None:intergenic | 35.0% |
| ! | TGGCAGCACATATTTGTTAA+TGG | + | chr7_4:62162891-62162910 | None:intergenic | 35.0% |
| TTGGAACAGAATGAAGAGAA+GGG | + | chr7_4:62162951-62162970 | None:intergenic | 35.0% | |
| !! | CCAAAAAATTCAGGTTGGAA+TGG | + | chr7_4:62162992-62163011 | None:intergenic | 35.0% |
| !!! | CCATTCCAACCTGAATTTTT+TGG | - | chr7_4:62162989-62163008 | Msa1169230:three_prime_UTR | 35.0% |
| GCATTGCTTTCTTCCATAAA+TGG | + | chr7_4:62163070-62163089 | None:intergenic | 35.0% | |
| !!! | TTTGTGATGGGTTTTTTCAC+AGG | - | chr7_4:62163107-62163126 | Msa1169230:CDS | 35.0% |
| !!! | GTTTTTTGGCTATGGATTCT+AGG | + | chr7_4:62163269-62163288 | None:intergenic | 35.0% |
| !!! | TTGTTGCTGCTGTTGTTTTT+TGG | + | chr7_4:62163283-62163302 | None:intergenic | 35.0% |
| ! | AGTCTTTTAGGCTTCAATTG+AGG | + | chr7_4:62163329-62163348 | None:intergenic | 35.0% |
| !!! | TAAGGTAGTTTTGTGCTTGT+TGG | + | chr7_4:62163368-62163387 | None:intergenic | 35.0% |
| TTGTTGATCAACCATTGCTT+TGG | - | chr7_4:62163429-62163448 | Msa1169230:intron | 35.0% | |
| GGAAAACTGGTATCATGTAT+AGG | - | chr7_4:62163501-62163520 | Msa1169230:intron | 35.0% | |
| ! | TGTTTTCAGTGAAGAGTTCA+TGG | - | chr7_4:62163529-62163548 | Msa1169230:intron | 35.0% |
| ATTGAGCATCATAGACTAAG+TGG | - | chr7_4:62163599-62163618 | Msa1169230:intron | 35.0% | |
| TTGAGCATCATAGACTAAGT+GGG | - | chr7_4:62163600-62163619 | Msa1169230:intron | 35.0% | |
| ACTCAATATCTCTAAGCTGT+TGG | + | chr7_4:62163673-62163692 | None:intergenic | 35.0% | |
| !! | TTGGTGTCACTAAAATTCGA+GGG | + | chr7_4:62163971-62163990 | None:intergenic | 35.0% |
| !! | ATTGGTGTCACTAAAATTCG+AGG | + | chr7_4:62163972-62163991 | None:intergenic | 35.0% |
| CATGATATTTCACACTTCCT+AGG | - | chr7_4:62164243-62164262 | Msa1169230:intron | 35.0% | |
| TTTGCAAGTAATAATGCCGT+TGG | + | chr7_4:62164381-62164400 | None:intergenic | 35.0% | |
| ATTCAATAGCTCCATTCTCT+GGG | - | chr7_4:62164518-62164537 | Msa1169230:intron | 35.0% | |
| ATCAGTTAAGGATACTTCTC+AGG | - | chr7_4:62164566-62164585 | Msa1169230:CDS | 35.0% | |
| TCTATCATTTACGCTCTGAT+AGG | - | chr7_4:62164886-62164905 | Msa1169230:intron | 35.0% | |
| ! | TCAATAATAAAACTCTGGGG+AGG | - | chr7_4:62164925-62164944 | Msa1169230:intron | 35.0% |
| ! | GTCTTTCAGACTTTTACCTA+CGG | + | chr7_4:62165055-62165074 | None:intergenic | 35.0% |
| TCCTATTTGTCTATGGGTAA+AGG | - | chr7_4:62165115-62165134 | Msa1169230:intron | 35.0% | |
| TAAAGTAGTTGGATGAGGTT+GGG | + | chr7_4:62165546-62165565 | None:intergenic | 35.0% | |
| TTAAAGTAGTTGGATGAGGT+TGG | + | chr7_4:62165547-62165566 | None:intergenic | 35.0% | |
| CACATGTCATAGACATTATG+CGG | + | chr7_4:62165681-62165700 | None:intergenic | 35.0% | |
| AGGTTCTATCTTGGAGTAAA+AGG | + | chr7_4:62165720-62165739 | None:intergenic | 35.0% | |
| !! | TTGTCACTTTGCATTTCATG+TGG | + | chr7_4:62165775-62165794 | None:intergenic | 35.0% |
| !! | ATTTGAGGCTACTTCTTTTG+TGG | - | chr7_4:62165889-62165908 | Msa1169230:CDS | 35.0% |
| CACAAACTTGATTGAGTTCT+AGG | + | chr7_4:62165919-62165938 | None:intergenic | 35.0% | |
| TAGAAACTAGTGCTTGGAAA+TGG | + | chr7_4:62166039-62166058 | None:intergenic | 35.0% | |
| AGTAGTTAGAAACTAGTGCT+TGG | + | chr7_4:62166045-62166064 | None:intergenic | 35.0% | |
| TATGAAAGCAACTCTTGTAC+TGG | + | chr7_4:62166130-62166149 | None:intergenic | 35.0% | |
| GTTGGAACAGAATGAAGAGA+AGG | + | chr7_4:62162952-62162971 | None:intergenic | 40.0% | |
| ! | AGAAGATGGGTTCAGTAGAA+AGG | - | chr7_4:62163030-62163049 | Msa1169230:three_prime_UTR | 40.0% |
| GTTGACATTTGAGAAGGTTG+TGG | + | chr7_4:62163212-62163231 | None:intergenic | 40.0% | |
| !!! | CTGCTGTTGTTTTTTGGCTA+TGG | + | chr7_4:62163277-62163296 | None:intergenic | 40.0% |
| TTAGGCTTCAATTGAGGTAG+TGG | + | chr7_4:62163323-62163342 | None:intergenic | 40.0% | |
| TCGACAACAATCCAAAGCAA+TGG | + | chr7_4:62163443-62163462 | None:intergenic | 40.0% | |
| CTCTGGCAATTCAGTTGATT+CGG | + | chr7_4:62163474-62163493 | None:intergenic | 40.0% | |
| CTGAATTGCCAGAGATATTG+AGG | - | chr7_4:62163480-62163499 | Msa1169230:intron | 40.0% | |
| ! | CCAGTTTTCCTCAATATCTC+TGG | + | chr7_4:62163491-62163510 | None:intergenic | 40.0% |
| CCAGAGATATTGAGGAAAAC+TGG | - | chr7_4:62163488-62163507 | Msa1169230:intron | 40.0% | |
| AGCAAATAGAAGGGGTAGAA+AGG | + | chr7_4:62163699-62163718 | None:intergenic | 40.0% | |
| ACTTGAGAAGAGTCACAAAC+TGG | + | chr7_4:62164429-62164448 | None:intergenic | 40.0% | |
| TGTGACTCTTCTCAAGTCAT+TGG | - | chr7_4:62164432-62164451 | Msa1169230:intron | 40.0% | |
| ACTCTTCTCAAGTCATTGGA+TGG | - | chr7_4:62164436-62164455 | Msa1169230:intron | 40.0% | |
| CATTCAATAGCTCCATTCTC+TGG | - | chr7_4:62164517-62164536 | Msa1169230:intron | 40.0% | |
| GCCTTTACCCATAGACAAAT+AGG | + | chr7_4:62165119-62165138 | None:intergenic | 40.0% | |
| AAAGCTCTTAGGTAGAGTAG+AGG | + | chr7_4:62165852-62165871 | None:intergenic | 40.0% | |
| !! | GCAAGTAGTTCTAGAAGATG+AGG | - | chr7_4:62165941-62165960 | Msa1169230:CDS | 40.0% |
| ! | AGAAGATGAGGCTAAGTTGA+AGG | - | chr7_4:62165953-62165972 | Msa1169230:CDS | 40.0% |
| ! | GAAGATGAGGCTAAGTTGAA+GGG | - | chr7_4:62165954-62165973 | Msa1169230:CDS | 40.0% |
| !!! | AGCAAGATTTTGGAGCAGTA+CGG | + | chr7_4:62165987-62166006 | None:intergenic | 40.0% |
| ACTGCTCCAAAATCTTGCTA+TGG | - | chr7_4:62165988-62166007 | Msa1169230:CDS | 40.0% | |
| ! | GAAACGCCATAGCAAGATTT+TGG | + | chr7_4:62165997-62166016 | None:intergenic | 40.0% |
| ! | TTCACAGGTTTAGCTCCAAC+AGG | - | chr7_4:62163122-62163141 | Msa1169230:CDS | 45.0% |
| CAGTGAAGAGTTCATGGACT+TGG | - | chr7_4:62163535-62163554 | Msa1169230:intron | 45.0% | |
| AGTGGGATTGTTCACTTTGC+TGG | - | chr7_4:62163617-62163636 | Msa1169230:intron | 45.0% | |
| TGACAATTGAGCAGGGTCTT+TGG | - | chr7_4:62164348-62164367 | Msa1169230:intron | 45.0% | |
| GGGTCGAACTTCATCAGTTA+AGG | - | chr7_4:62164554-62164573 | Msa1169230:CDS | 45.0% | |
| !!! | AAGATTTTGGAGCAGTACGG+TGG | + | chr7_4:62165984-62166003 | None:intergenic | 45.0% |
| !!! | TAATTTTTTTTTTTTTTTGA+AGG | - | chr7_4:62165321-62165340 | Msa1169230:intron | 5.0% |
| TGGCTATGGATTCTAGGTGC+TGG | + | chr7_4:62163263-62163282 | None:intergenic | 50.0% | |
| !! | TGAGCAGGGTCTTTGGAACA+TGG | - | chr7_4:62164355-62164374 | Msa1169230:intron | 50.0% |
| !! | GGTCTTTGGAACATGGCCAA+CGG | - | chr7_4:62164362-62164381 | Msa1169230:intron | 50.0% |
| AAGTTCGACCCCATCTCTCA+GGG | + | chr7_4:62164545-62164564 | None:intergenic | 50.0% | |
| TCTCTCAGGGTCCCAGAGAA+TGG | + | chr7_4:62164532-62164551 | None:intergenic | 55.0% | |
| !! | TTCTCTGGGACCCTGAGAGA+TGG | - | chr7_4:62164532-62164551 | Msa1169230:CDS | 55.0% |
| !! | TCTCTGGGACCCTGAGAGAT+GGG | - | chr7_4:62164533-62164552 | Msa1169230:CDS | 55.0% |
| GAAGTTCGACCCCATCTCTC+AGG | + | chr7_4:62164546-62164565 | None:intergenic | 55.0% | |
| GGCCTTGATGCACTTGCACA+GGG | + | chr7_4:62164951-62164970 | None:intergenic | 55.0% | |
| TGCAAGTGCATCAAGGCCCT+TGG | - | chr7_4:62164953-62164972 | Msa1169230:intron | 55.0% | |
| !!! | ATTTTGAGGCCCCGTGCCAA+GGG | + | chr7_4:62164972-62164991 | None:intergenic | 55.0% |
| !!! | AATTTTGAGGCCCCGTGCCA+AGG | + | chr7_4:62164973-62164992 | None:intergenic | 55.0% |
| !! | TAGTGACGGATTTCGGCCGT+AGG | + | chr7_4:62165021-62165040 | None:intergenic | 55.0% |
| TAACGGGGCCTCCGAATTGT+CGG | - | chr7_4:62165219-62165238 | Msa1169230:intron | 55.0% | |
| !! | CTCTGGGACCCTGAGAGATG+GGG | - | chr7_4:62164534-62164553 | Msa1169230:CDS | 60.0% |
| GGCCCTGTGCAAGTGCATCA+AGG | - | chr7_4:62164946-62164965 | Msa1169230:intron | 60.0% | |
| GGGCCTTGATGCACTTGCAC+AGG | + | chr7_4:62164952-62164971 | None:intergenic | 60.0% | |
| GTGCATCAAGGCCCTTGGCA+CGG | - | chr7_4:62164958-62164977 | Msa1169230:intron | 60.0% | |
| TGCATCAAGGCCCTTGGCAC+GGG | - | chr7_4:62164959-62164978 | Msa1169230:intron | 60.0% | |
| AACGGGGCCTCCGAATTGTC+GGG | - | chr7_4:62165220-62165239 | Msa1169230:intron | 60.0% | |
| TAGGGCCGTCCCCGACAATT+CGG | + | chr7_4:62165233-62165252 | None:intergenic | 60.0% | |
| GCATCAAGGCCCTTGGCACG+GGG | - | chr7_4:62164960-62164979 | Msa1169230:intron | 65.0% | |
| ACGGGGCCTCCGAATTGTCG+GGG | - | chr7_4:62165221-62165240 | Msa1169230:intron | 65.0% | |
| GGCCTCCGAATTGTCGGGGA+CGG | - | chr7_4:62165225-62165244 | Msa1169230:intron | 65.0% | |
| GGCCGTCCCCGACAATTCGG+AGG | + | chr7_4:62165230-62165249 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 62162796 | 62166322 | 62162796 | ID=Msa1169230;Name=Msa1169230 |
| chr7_4 | mRNA | 62162796 | 62166322 | 62162796 | ID=Msa1169230-mRNA-1;Parent=Msa1169230;Name=Msa1169230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=239|1|1|1|1|1|3|270|337 |
| chr7_4 | exon | 62162796 | 62163197 | 62162796 | ID=Msa1169230-mRNA-1:exon:19650;Parent=Msa1169230-mRNA-1 |
| chr7_4 | exon | 62164531 | 62164756 | 62164531 | ID=Msa1169230-mRNA-1:exon:19649;Parent=Msa1169230-mRNA-1 |
| chr7_4 | exon | 62165428 | 62166322 | 62165428 | ID=Msa1169230-mRNA-1:exon:19648;Parent=Msa1169230-mRNA-1 |
| chr7_4 | five_prime_UTR | 62166084 | 62166322 | 62166084 | ID=Msa1169230-mRNA-1:five_prime_utr;Parent=Msa1169230-mRNA-1 |
| chr7_4 | CDS | 62165428 | 62166083 | 62165428 | ID=Msa1169230-mRNA-1:cds;Parent=Msa1169230-mRNA-1 |
| chr7_4 | CDS | 62164531 | 62164756 | 62164531 | ID=Msa1169230-mRNA-1:cds;Parent=Msa1169230-mRNA-1 |
| chr7_4 | CDS | 62163066 | 62163197 | 62163066 | ID=Msa1169230-mRNA-1:cds;Parent=Msa1169230-mRNA-1 |
| chr7_4 | three_prime_UTR | 62162796 | 62163065 | 62162796 | ID=Msa1169230-mRNA-1:three_prime_utr;Parent=Msa1169230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
