Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090150 | XP_003630257.1 | 96.348 | 356 | 12 | 1 | 1 | 355 | 1 | 356 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090150 | sp|P99177|CSD_STAAN | 23.221 | 267 | 176 | 7 | 88 | 350 | 25 | 266 | 6.10e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090150 | G7LE11 | 96.348 | 356 | 12 | 1 | 1 | 355 | 1 | 356 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012770 | Msa1090150 | 0.806366 | 8.517140e-50 | -8.615850e-47 |
| Msa0037180 | Msa1090150 | 0.806274 | 8.909042e-50 | -8.615850e-47 |
| Msa0040210 | Msa1090150 | 0.805599 | 1.234882e-49 | -8.615850e-47 |
| Msa0092220 | Msa1090150 | 0.817953 | 2.523413e-52 | -8.615850e-47 |
| Msa0108350 | Msa1090150 | 0.810817 | 9.546186e-51 | -8.615850e-47 |
| Msa0114610 | Msa1090150 | 0.804546 | 2.050613e-49 | -8.615850e-47 |
| Msa0614290 | Msa1090150 | 0.826381 | 2.799433e-54 | -8.615850e-47 |
| Msa0625900 | Msa1090150 | -0.808599 | 2.861524e-50 | -8.615850e-47 |
| Msa0633630 | Msa1090150 | 0.817364 | 3.425755e-52 | -8.615850e-47 |
| Msa0638820 | Msa1090150 | 0.835553 | 1.569044e-56 | -8.615850e-47 |
| Msa0663580 | Msa1090150 | -0.817228 | 3.676983e-52 | -8.615850e-47 |
| Msa0663690 | Msa1090150 | -0.807772 | 4.292118e-50 | -8.615850e-47 |
| Msa0671640 | Msa1090150 | 0.818249 | 2.163113e-52 | -8.615850e-47 |
| Msa0695630 | Msa1090150 | 0.829532 | 4.884648e-55 | -8.615850e-47 |
| Msa0697510 | Msa1090150 | 0.815477 | 9.062059e-52 | -8.615850e-47 |
| Msa0697520 | Msa1090150 | 0.835403 | 1.712851e-56 | -8.615850e-47 |
| Msa0705520 | Msa1090150 | 0.935028 | 1.613826e-96 | -8.615850e-47 |
| Msa0711260 | Msa1090150 | 0.812850 | 3.444463e-51 | -8.615850e-47 |
| Msa0721930 | Msa1090150 | 0.812757 | 3.610299e-51 | -8.615850e-47 |
| Msa0724440 | Msa1090150 | 0.804333 | 2.272011e-49 | -8.615850e-47 |
| Msa0751960 | Msa1090150 | 0.805079 | 1.587212e-49 | -8.615850e-47 |
| Msa0762930 | Msa1090150 | 0.814600 | 1.418307e-51 | -8.615850e-47 |
| Msa0789220 | Msa1090150 | 0.822963 | 1.788316e-53 | -8.615850e-47 |
| Msa0806930 | Msa1090150 | 0.804796 | 1.819163e-49 | -8.615850e-47 |
| Msa0814160 | Msa1090150 | 0.854959 | 8.694535e-62 | -8.615850e-47 |
| Msa0822410 | Msa1090150 | 0.802580 | 5.244106e-49 | -8.615850e-47 |
| Msa0831890 | Msa1090150 | 0.805040 | 1.617390e-49 | -8.615850e-47 |
| Msa0120860 | Msa1090150 | 0.807285 | 5.447853e-50 | -8.615850e-47 |
| Msa0134570 | Msa1090150 | 0.814131 | 1.801045e-51 | -8.615850e-47 |
| Msa0150910 | Msa1090150 | 0.809125 | 2.208866e-50 | -8.615850e-47 |
| Msa0180100 | Msa1090150 | -0.801267 | 9.758980e-49 | -8.615850e-47 |
| Msa0184510 | Msa1090150 | -0.807101 | 5.958772e-50 | -8.615850e-47 |
| Msa0190670 | Msa1090150 | 0.812871 | 3.408235e-51 | -8.615850e-47 |
| Msa0220090 | Msa1090150 | 0.827279 | 1.707637e-54 | -8.615850e-47 |
| Msa0224210 | Msa1090150 | 0.823369 | 1.437198e-53 | -8.615850e-47 |
| Msa0225070 | Msa1090150 | -0.812828 | 3.482637e-51 | -8.615850e-47 |
| Msa0238140 | Msa1090150 | 0.843167 | 1.654511e-58 | -8.615850e-47 |
| Msa0368620 | Msa1090150 | 0.803812 | 2.914944e-49 | -8.615850e-47 |
| Msa0389710 | Msa1090150 | 0.806943 | 6.434478e-50 | -8.615850e-47 |
| Msa0390790 | Msa1090150 | 0.821442 | 4.030012e-53 | -8.615850e-47 |
| Msa0416040 | Msa1090150 | 0.811779 | 5.903732e-51 | -8.615850e-47 |
| Msa0452770 | Msa1090150 | 0.810695 | 1.014386e-50 | -8.615850e-47 |
| Msa0463970 | Msa1090150 | 0.809226 | 2.101175e-50 | -8.615850e-47 |
| Msa0480260 | Msa1090150 | 0.802979 | 4.338588e-49 | -8.615850e-47 |
| Msa1041650 | Msa1090150 | 0.839136 | 1.897962e-57 | -8.615850e-47 |
| Msa1079780 | Msa1090150 | 0.801217 | 9.992444e-49 | -8.615850e-47 |
| Msa1090150 | Msa1093420 | 0.811431 | 7.023938e-51 | -8.615850e-47 |
| Msa1090150 | Msa1129600 | 0.815996 | 6.942340e-52 | -8.615850e-47 |
| Msa1090150 | Msa1157200 | 0.809483 | 1.850323e-50 | -8.615850e-47 |
| Msa1090150 | Msa1166550 | 0.836808 | 7.531569e-57 | -8.615850e-47 |
| Msa1090150 | Msa1170320 | 0.801734 | 7.830670e-49 | -8.615850e-47 |
| Msa1090150 | Msa1179340 | 0.823493 | 1.344758e-53 | -8.615850e-47 |
| Msa1090150 | Msa1225890 | 0.810052 | 1.396505e-50 | -8.615850e-47 |
| Msa1090150 | Msa1228600 | -0.810422 | 1.161983e-50 | -8.615850e-47 |
| Msa1090150 | Msa1233090 | 0.830739 | 2.478455e-55 | -8.615850e-47 |
| Msa1090150 | Msa1304870 | 0.802843 | 4.627310e-49 | -8.615850e-47 |
| Msa1090150 | Msa1313720 | 0.801609 | 8.304291e-49 | -8.615850e-47 |
| Msa1090150 | Msa1317740 | 0.805255 | 1.458066e-49 | -8.615850e-47 |
| Msa1090150 | Msa1327690 | -0.803630 | 3.181264e-49 | -8.615850e-47 |
| Msa1090150 | Msa1345390 | 0.824821 | 6.556732e-54 | -8.615850e-47 |
| Msa1090150 | Msa1364190 | 0.811719 | 6.083218e-51 | -8.615850e-47 |
| Msa1090150 | Msa1369060 | 0.823020 | 1.733882e-53 | -8.615850e-47 |
| Msa1090150 | Msa1401070 | 0.806843 | 6.756194e-50 | -8.615850e-47 |
| Msa1090150 | Msa1446920 | 0.800961 | 1.127133e-48 | -8.615850e-47 |
| Msa0251120 | Msa1090150 | 0.832344 | 9.972594e-56 | -8.615850e-47 |
| Msa0261400 | Msa1090150 | 0.816858 | 4.453087e-52 | -8.615850e-47 |
| Msa0271660 | Msa1090150 | 0.803451 | 3.464537e-49 | -8.615850e-47 |
| Msa0275560 | Msa1090150 | 0.808401 | 3.154377e-50 | -8.615850e-47 |
| Msa0278480 | Msa1090150 | 0.819399 | 1.185619e-52 | -8.615850e-47 |
| Msa0284730 | Msa1090150 | 0.810853 | 9.373894e-51 | -8.615850e-47 |
| Msa0328100 | Msa1090150 | 0.820523 | 6.557769e-53 | -8.615850e-47 |
| Msa0358470 | Msa1090150 | 0.807505 | 4.890985e-50 | -8.615850e-47 |
| Msa0508160 | Msa1090150 | 0.803764 | 2.983242e-49 | -8.615850e-47 |
| Msa0538050 | Msa1090150 | -0.820469 | 6.747894e-53 | -8.615850e-47 |
| Msa0560280 | Msa1090150 | 0.835742 | 1.405788e-56 | -8.615850e-47 |
| Msa0566930 | Msa1090150 | 0.803207 | 3.892457e-49 | -8.615850e-47 |
| Msa0569100 | Msa1090150 | 0.926628 | 3.609339e-91 | -8.615850e-47 |
| Msa0569130 | Msa1090150 | 0.855239 | 7.207136e-62 | -8.615850e-47 |
| Msa0580210 | Msa1090150 | 0.925492 | 1.705568e-90 | -8.615850e-47 |
| Msa0583390 | Msa1090150 | 0.805254 | 1.458751e-49 | -8.615850e-47 |
| Msa0584370 | Msa1090150 | 0.820885 | 5.414717e-53 | -8.615850e-47 |
| Msa0585720 | Msa1090150 | -0.819568 | 1.084513e-52 | -8.615850e-47 |
| Msa0593600 | Msa1090150 | 0.831748 | 1.400331e-55 | -8.615850e-47 |
| Msa0854840 | Msa1090150 | 0.829797 | 4.209960e-55 | -8.615850e-47 |
| Msa0932150 | Msa1090150 | 0.802536 | 5.355587e-49 | -8.615850e-47 |
| Msa0967900 | Msa1090150 | -0.811052 | 8.489168e-51 | -8.615850e-47 |
| Msa0976490 | Msa1090150 | 0.804489 | 2.108026e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1090150 | MtrunA17_Chr8g0384171 | 96.348 | 356 | 12 | 1 | 1 | 355 | 1 | 356 | 0.0 | 717 |
| Msa1090150 | MtrunA17_Chr8g0384181 | 76.309 | 363 | 67 | 5 | 1 | 352 | 16 | 370 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 84 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGATTCTTTCGAGGATT+TGG | 0.229032 | 7_3:+3868042 | Msa1090150:CDS |
| CAACGTAACTCTCACAAGTA+TGG | 0.267344 | 7_3:-3868789 | None:intergenic |
| ATCAGCCCACATAAGTTTCT+TGG | 0.287833 | 7_3:+3870180 | Msa1090150:CDS |
| ACCATTCCAATCTACTTTCT+TGG | 0.289172 | 7_3:+3869037 | Msa1090150:CDS |
| ATTCTTTCTCTCAAAATAGA+AGG | 0.304064 | 7_3:-3868958 | None:intergenic |
| GTAGAATTCAACTCTCCTTT+TGG | 0.313407 | 7_3:+3868148 | Msa1090150:CDS |
| TACTTCTTGAAGCCTCTTGA+TGG | 0.336697 | 7_3:-3868920 | None:intergenic |
| TCAGCTTGTAGTAATGTAAC+TGG | 0.345040 | 7_3:+3869183 | Msa1090150:CDS |
| ATGCATAACTCAGAAAATAT+TGG | 0.345574 | 7_3:-3867953 | None:intergenic |
| CTTGGTGGCCCTGACTCTCC+AGG | 0.347337 | 7_3:+3870198 | Msa1090150:CDS |
| AACAGTATCCCTGGAGAGTC+AGG | 0.353840 | 7_3:-3870207 | None:intergenic |
| ACTTTCTTGGAGGCAAAGTT+TGG | 0.360742 | 7_3:+3869050 | Msa1090150:CDS |
| TAGATTGGAATGGTGCTCAT+AGG | 0.390775 | 7_3:-3869028 | None:intergenic |
| TTGGCTGAGGTTGTAGAGAT+TGG | 0.398331 | 7_3:+3869069 | Msa1090150:CDS |
| GTGAGAGTTACGTTGGAAAC+AGG | 0.400045 | 7_3:+3868797 | Msa1090150:CDS |
| GCACTCATGCTATGCGGCTC+GGG | 0.419195 | 7_3:+3868886 | Msa1090150:CDS |
| AGCATGCAAAACCTTTGTAT+TGG | 0.421268 | 7_3:-3869245 | None:intergenic |
| TTGCCTCCAAGAAAGTAGAT+TGG | 0.431939 | 7_3:-3869043 | None:intergenic |
| GCCTTGGTAAAGAAGAAAGA+TGG | 0.443504 | 7_3:+3868989 | Msa1090150:CDS |
| AAGAGGCTTCAAGAAGTAAT+GGG | 0.454316 | 7_3:+3868925 | Msa1090150:CDS |
| TATTCACTCAGATTCTTTCG+AGG | 0.454737 | 7_3:+3868036 | Msa1090150:CDS |
| TTCGAGGATTTGGTGGAGAT+AGG | 0.455189 | 7_3:+3868052 | Msa1090150:CDS |
| GAGATTGGCCTTGATGATCA+AGG | 0.455541 | 7_3:+3869084 | Msa1090150:CDS |
| GTAGAAAGGCAGAAGATGTT+TGG | 0.455887 | 7_3:-3868242 | None:intergenic |
| CGTCAATAGCTTCAATGAAA+AGG | 0.456104 | 7_3:+3870299 | Msa1090150:CDS |
| GTGGAGATTGACATGAGATC+GGG | 0.457650 | 7_3:+3870129 | Msa1090150:CDS |
| TTATTGACCTTGTTTCTGCT+TGG | 0.461439 | 7_3:-3867980 | None:intergenic |
| TATGCTGATCACACGGCCTC+AGG | 0.461915 | 7_3:+3868187 | Msa1090150:CDS |
| GATACCAATCGACCCTTGTT+GGG | 0.467394 | 7_3:+3869153 | Msa1090150:CDS |
| TGCACTCATGCTATGCGGCT+CGG | 0.467742 | 7_3:+3868885 | Msa1090150:CDS |
| CAAGAGGCTTCAAGAAGTAA+TGG | 0.469088 | 7_3:+3868924 | Msa1090150:CDS |
| GTACCACCTCCACAAGTTGA+TGG | 0.471883 | 7_3:-3870267 | None:intergenic |
| CCACTGATTCATTACATGGC+AGG | 0.474462 | 7_3:-3868081 | None:intergenic |
| TTGGAGGCAAAGTTTGGCTG+AGG | 0.485112 | 7_3:+3869056 | Msa1090150:CDS |
| ATTCCAATCTACTTTCTTGG+AGG | 0.488539 | 7_3:+3869040 | Msa1090150:CDS |
| TTTATTTAGTGGTCCGTATG+TGG | 0.491567 | 7_3:+3870110 | Msa1090150:intron |
| TCTTCCACTGATTCATTACA+TGG | 0.491814 | 7_3:-3868085 | None:intergenic |
| TTGTTCATTAACAGTATCCC+TGG | 0.497313 | 7_3:-3870216 | None:intergenic |
| ACAAGTTTCCTTGTACCAAA+AGG | 0.497839 | 7_3:-3868163 | None:intergenic |
| AGATTCTTTCGAGGATTTGG+TGG | 0.498052 | 7_3:+3868045 | Msa1090150:CDS |
| AAACATCTTCTGCCTTTCTA+CGG | 0.499154 | 7_3:+3868244 | Msa1090150:CDS |
| GAAAGAATGTTGAGGTGCCT+TGG | 0.502619 | 7_3:+3868973 | Msa1090150:CDS |
| AGATTGGAATGGTGCTCATA+GGG | 0.519242 | 7_3:-3869027 | None:intergenic |
| TGGTTGAGGTCACAAATCAT+TGG | 0.521950 | 7_3:+3868118 | Msa1090150:CDS |
| AGATCCCAACAAGGGTCGAT+TGG | 0.524725 | 7_3:-3869157 | None:intergenic |
| AGATACCAATCGACCCTTGT+TGG | 0.539683 | 7_3:+3869152 | Msa1090150:CDS |
| AATATGTCAATACCGTAGAA+AGG | 0.540918 | 7_3:-3868256 | None:intergenic |
| TTGGTGGCCCTGACTCTCCA+GGG | 0.546252 | 7_3:+3870199 | Msa1090150:CDS |
| GCTATGCGGCTCGGGCACAA+CGG | 0.546918 | 7_3:+3868894 | Msa1090150:CDS |
| CAGATACACGAGCAATTGCT+AGG | 0.548273 | 7_3:+3869214 | Msa1090150:CDS |
| TGTGGAGATTGACATGAGAT+CGG | 0.551632 | 7_3:+3870128 | Msa1090150:CDS |
| TTCTTTCTCTCAAAATAGAA+GGG | 0.555590 | 7_3:-3868957 | None:intergenic |
| AACGTAACTCTCACAAGTAT+GGG | 0.555777 | 7_3:-3868788 | None:intergenic |
| CCTCCATCAACTTGTGGAGG+TGG | 0.555833 | 7_3:+3870264 | Msa1090150:CDS |
| CTTATGTGGGCTGATGAAAA+CGG | 0.557601 | 7_3:-3870172 | None:intergenic |
| TGATCAAGGGTTGCTTGACA+TGG | 0.558737 | 7_3:+3869098 | Msa1090150:CDS |
| TGACGACGGTAGAACAAACT+TGG | 0.559748 | 7_3:+3867918 | Msa1090150:CDS |
| CCCATCTTTCTTCTTTACCA+AGG | 0.575313 | 7_3:-3868990 | None:intergenic |
| GGGCCACCAAGAAACTTATG+TGG | 0.578448 | 7_3:-3870186 | None:intergenic |
| AGCTTTGAAGCTACAACTTG+AGG | 0.579642 | 7_3:+3869122 | Msa1090150:CDS |
| AGCCCACATAAGTTTCTTGG+TGG | 0.581206 | 7_3:+3870183 | Msa1090150:CDS |
| CATAGCTCCAAGCAGAAACA+AGG | 0.584497 | 7_3:+3867973 | Msa1090150:CDS |
| CTCATGTCAATCTCCACATA+CGG | 0.586246 | 7_3:-3870123 | None:intergenic |
| CAAGCAACCCTTGATCATCA+AGG | 0.588411 | 7_3:-3869092 | None:intergenic |
| TCACCTCCATCAACTTGTGG+AGG | 0.592933 | 7_3:+3870261 | Msa1090150:CDS |
| GCACAACGGCAGCCATCAAG+AGG | 0.593525 | 7_3:+3868908 | Msa1090150:CDS |
| CCTGCCATGTAATGAATCAG+TGG | 0.593664 | 7_3:+3868081 | Msa1090150:CDS |
| AGATTGGCCTTGATGATCAA+GGG | 0.600995 | 7_3:+3869085 | Msa1090150:CDS |
| AGGCTTATTCACCAATACAA+AGG | 0.604707 | 7_3:+3869234 | Msa1090150:CDS |
| CATACTTGTGAGAGTTACGT+TGG | 0.611551 | 7_3:+3868790 | Msa1090150:CDS |
| CCTTGGTAAAGAAGAAAGAT+GGG | 0.611773 | 7_3:+3868990 | Msa1090150:CDS |
| ACAGTATCCCTGGAGAGTCA+GGG | 0.631162 | 7_3:-3870206 | None:intergenic |
| TCCAAGAAAGTAGATTGGAA+TGG | 0.634807 | 7_3:-3869038 | None:intergenic |
| GAAGTGAAGACTGCGACCTG+AGG | 0.647793 | 7_3:-3868203 | None:intergenic |
| TGGAGATTGACATGAGATCG+GGG | 0.651246 | 7_3:+3870130 | Msa1090150:CDS |
| AGCTGAGAAAGATCCCAACA+AGG | 0.657205 | 7_3:-3869166 | None:intergenic |
| ACTTGTCTATGCTGATCACA+CGG | 0.658126 | 7_3:+3868180 | Msa1090150:CDS |
| GGCCACCAAGAAACTTATGT+GGG | 0.661192 | 7_3:-3870185 | None:intergenic |
| AATTAACTTCATGTTGACGA+CGG | 0.669839 | 7_3:+3867904 | None:intergenic |
| GCTGAGAAAGATCCCAACAA+GGG | 0.674394 | 7_3:-3869165 | None:intergenic |
| GGAGATTGACATGAGATCGG+GGG | 0.699559 | 7_3:+3870131 | Msa1090150:CDS |
| CCACCTCCACAAGTTGATGG+AGG | 0.701065 | 7_3:-3870264 | None:intergenic |
| TGGTAAAGAAGAAAGATGGG+TGG | 0.706827 | 7_3:+3868993 | Msa1090150:CDS |
| GACGATGCACTCATGCTATG+CGG | 0.716236 | 7_3:+3868880 | Msa1090150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCGTATAAAAAAATAAATT+AGG | + | chr7_3:3869330-3869349 | Msa1090150:intron | 10.0% |
| !! | TCGTATAAAAAAATAAATTA+GGG | + | chr7_3:3869331-3869350 | Msa1090150:intron | 10.0% |
| !! | ATCTATGTTAATAAATTATA+TGG | - | chr7_3:3869528-3869547 | None:intergenic | 10.0% |
| !!! | TTATTAATTTGTTTATTTAG+TGG | + | chr7_3:3870099-3870118 | Msa1090150:intron | 10.0% |
| !! | TTCGTATAAAAAAATAAATT+AGG | + | chr7_3:3869330-3869349 | Msa1090150:intron | 10.0% |
| !! | TCGTATAAAAAAATAAATTA+GGG | + | chr7_3:3869331-3869350 | Msa1090150:intron | 10.0% |
| !! | ATCTATGTTAATAAATTATA+TGG | - | chr7_3:3869528-3869547 | None:intergenic | 10.0% |
| !!! | TTATTAATTTGTTTATTTAG+TGG | + | chr7_3:3870099-3870118 | Msa1090150:intron | 10.0% |
| !!! | ATATGTATCTCTTTTTATTA+CGG | + | chr7_3:3868519-3868538 | Msa1090150:intron | 15.0% |
| !!! | GGAAAATTTTCATTATTTTA+TGG | + | chr7_3:3868690-3868709 | Msa1090150:intron | 15.0% |
| !!! | AGATTTAAAATAATGGTAAA+AGG | + | chr7_3:3869358-3869377 | Msa1090150:intron | 15.0% |
| !! | ATTTGAAAATGAACTAAATT+TGG | + | chr7_3:3869498-3869517 | Msa1090150:intron | 15.0% |
| !! | TTTGAAAATGAACTAAATTT+GGG | + | chr7_3:3869499-3869518 | Msa1090150:intron | 15.0% |
| !! | TACATATAATATGATCAAAA+TGG | - | chr7_3:3869994-3870013 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTCAAGTTTATTT+TGG | + | chr7_3:3870038-3870057 | Msa1090150:intron | 15.0% |
| !!! | ATATGTATCTCTTTTTATTA+CGG | + | chr7_3:3868519-3868538 | Msa1090150:intron | 15.0% |
| !!! | GGAAAATTTTCATTATTTTA+TGG | + | chr7_3:3868690-3868709 | Msa1090150:intron | 15.0% |
| !!! | AGATTTAAAATAATGGTAAA+AGG | + | chr7_3:3869358-3869377 | Msa1090150:intron | 15.0% |
| !! | ATTTGAAAATGAACTAAATT+TGG | + | chr7_3:3869498-3869517 | Msa1090150:intron | 15.0% |
| !! | TTTGAAAATGAACTAAATTT+GGG | + | chr7_3:3869499-3869518 | Msa1090150:intron | 15.0% |
| !! | TACATATAATATGATCAAAA+TGG | - | chr7_3:3869994-3870013 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTCAAGTTTATTT+TGG | + | chr7_3:3870038-3870057 | Msa1090150:intron | 15.0% |
| !!! | CATATTTGGTTTTTGTTTTT+CGG | + | chr7_3:3868273-3868292 | Msa1090150:intron | 20.0% |
| !!! | AATTTGTGAATATCTTTTAG+GGG | - | chr7_3:3868588-3868607 | None:intergenic | 20.0% |
| !!! | CAATTTGTGAATATCTTTTA+GGG | - | chr7_3:3868589-3868608 | None:intergenic | 20.0% |
| !!! | TCAATTTGTGAATATCTTTT+AGG | - | chr7_3:3868590-3868609 | None:intergenic | 20.0% |
| !!! | TAAGCATTTTTTAATGTACT+TGG | - | chr7_3:3868848-3868867 | None:intergenic | 20.0% |
| !! | AAGTACATTAAAAAATGCTT+AGG | + | chr7_3:3868847-3868866 | Msa1090150:CDS | 20.0% |
| !! | AAGGTATGCATAATTATTTA+GGG | + | chr7_3:3869281-3869300 | Msa1090150:intron | 20.0% |
| !! | TTGAAAATGAACTAAATTTG+GGG | + | chr7_3:3869500-3869519 | Msa1090150:intron | 20.0% |
| !!! | TATATCATACTCTTTTTTTG+CGG | - | chr7_3:3869636-3869655 | None:intergenic | 20.0% |
| !!! | CTACAATATTTTTGTCATTT+AGG | + | chr7_3:3869776-3869795 | Msa1090150:intron | 20.0% |
| !!! | CATATTTGGTTTTTGTTTTT+CGG | + | chr7_3:3868273-3868292 | Msa1090150:intron | 20.0% |
| !!! | AATTTGTGAATATCTTTTAG+GGG | - | chr7_3:3868588-3868607 | None:intergenic | 20.0% |
| !!! | CAATTTGTGAATATCTTTTA+GGG | - | chr7_3:3868589-3868608 | None:intergenic | 20.0% |
| !!! | TCAATTTGTGAATATCTTTT+AGG | - | chr7_3:3868590-3868609 | None:intergenic | 20.0% |
| !!! | TAAGCATTTTTTAATGTACT+TGG | - | chr7_3:3868848-3868867 | None:intergenic | 20.0% |
| !! | AAGTACATTAAAAAATGCTT+AGG | + | chr7_3:3868847-3868866 | Msa1090150:CDS | 20.0% |
| !! | AAGGTATGCATAATTATTTA+GGG | + | chr7_3:3869281-3869300 | Msa1090150:intron | 20.0% |
| !! | TTGAAAATGAACTAAATTTG+GGG | + | chr7_3:3869500-3869519 | Msa1090150:intron | 20.0% |
| !!! | TATATCATACTCTTTTTTTG+CGG | - | chr7_3:3869636-3869655 | None:intergenic | 20.0% |
| !!! | CTACAATATTTTTGTCATTT+AGG | + | chr7_3:3869776-3869795 | Msa1090150:intron | 20.0% |
| ! | ATGCATAACTCAGAAAATAT+TGG | - | chr7_3:3867956-3867975 | None:intergenic | 25.0% |
| !!! | ACACATATTTGGTTTGTTAT+AGG | + | chr7_3:3868300-3868319 | Msa1090150:intron | 25.0% |
| ! | GATACATATACGTAGTTAAA+AGG | - | chr7_3:3868508-3868527 | None:intergenic | 25.0% |
| !! | TCTTTTTATTACGGTAACTA+CGG | + | chr7_3:3868528-3868547 | Msa1090150:intron | 25.0% |
| ! | TACATTAAAAAATGCTTAGG+TGG | + | chr7_3:3868850-3868869 | Msa1090150:CDS | 25.0% |
| ! | TTCTTTCTCTCAAAATAGAA+GGG | - | chr7_3:3868960-3868979 | None:intergenic | 25.0% |
| ! | ATTCTTTCTCTCAAAATAGA+AGG | - | chr7_3:3868961-3868980 | None:intergenic | 25.0% |
| ! | CAAGGTATGCATAATTATTT+AGG | + | chr7_3:3869280-3869299 | Msa1090150:intron | 25.0% |
| !! | GGGACAAAGATTTAAAATAA+TGG | + | chr7_3:3869351-3869370 | Msa1090150:intron | 25.0% |
| !! | ATTTAATTTACACAAACGAC+AGG | - | chr7_3:3869420-3869439 | None:intergenic | 25.0% |
| ! | GTCGTTTGTGTAAATTAAAT+AGG | + | chr7_3:3869420-3869439 | Msa1090150:intron | 25.0% |
| ! | AAATTAAATAGGAGAGTGAT+TGG | + | chr7_3:3869431-3869450 | Msa1090150:intron | 25.0% |
| ! | TGAAAATGAACTAAATTTGG+GGG | + | chr7_3:3869501-3869520 | Msa1090150:intron | 25.0% |
| !!! | ATATCATACTCTTTTTTTGC+GGG | - | chr7_3:3869635-3869654 | None:intergenic | 25.0% |
| !!! | TTTTTTGCACAAGAATATTC+TGG | + | chr7_3:3869703-3869722 | Msa1090150:intron | 25.0% |
| ! | TTGTAGAAAATTTAGACCTT+AGG | - | chr7_3:3869739-3869758 | None:intergenic | 25.0% |
| !! | TGTCATTTAGGTTATAGTTT+AGG | + | chr7_3:3869788-3869807 | Msa1090150:intron | 25.0% |
| ! | TTCATGAATTGATATGCTTT+AGG | - | chr7_3:3869869-3869888 | None:intergenic | 25.0% |
| ! | ATTAGGGACGAATATATATA+CGG | - | chr7_3:3869920-3869939 | None:intergenic | 25.0% |
| ! | TTAGCAAGCTACTAAAATTA+GGG | - | chr7_3:3869936-3869955 | None:intergenic | 25.0% |
| ! | ATTAGCAAGCTACTAAAATT+AGG | - | chr7_3:3869937-3869956 | None:intergenic | 25.0% |
| ! | ATGCATAACTCAGAAAATAT+TGG | - | chr7_3:3867956-3867975 | None:intergenic | 25.0% |
| !!! | ACACATATTTGGTTTGTTAT+AGG | + | chr7_3:3868300-3868319 | Msa1090150:intron | 25.0% |
| ! | GATACATATACGTAGTTAAA+AGG | - | chr7_3:3868508-3868527 | None:intergenic | 25.0% |
| !! | TCTTTTTATTACGGTAACTA+CGG | + | chr7_3:3868528-3868547 | Msa1090150:intron | 25.0% |
| ! | TACATTAAAAAATGCTTAGG+TGG | + | chr7_3:3868850-3868869 | Msa1090150:CDS | 25.0% |
| ! | TTCTTTCTCTCAAAATAGAA+GGG | - | chr7_3:3868960-3868979 | None:intergenic | 25.0% |
| ! | ATTCTTTCTCTCAAAATAGA+AGG | - | chr7_3:3868961-3868980 | None:intergenic | 25.0% |
| ! | CAAGGTATGCATAATTATTT+AGG | + | chr7_3:3869280-3869299 | Msa1090150:intron | 25.0% |
| !! | GGGACAAAGATTTAAAATAA+TGG | + | chr7_3:3869351-3869370 | Msa1090150:intron | 25.0% |
| !! | ATTTAATTTACACAAACGAC+AGG | - | chr7_3:3869420-3869439 | None:intergenic | 25.0% |
| ! | GTCGTTTGTGTAAATTAAAT+AGG | + | chr7_3:3869420-3869439 | Msa1090150:intron | 25.0% |
| ! | AAATTAAATAGGAGAGTGAT+TGG | + | chr7_3:3869431-3869450 | Msa1090150:intron | 25.0% |
| ! | TGAAAATGAACTAAATTTGG+GGG | + | chr7_3:3869501-3869520 | Msa1090150:intron | 25.0% |
| !!! | ATATCATACTCTTTTTTTGC+GGG | - | chr7_3:3869635-3869654 | None:intergenic | 25.0% |
| !!! | TTTTTTGCACAAGAATATTC+TGG | + | chr7_3:3869703-3869722 | Msa1090150:intron | 25.0% |
| ! | TTGTAGAAAATTTAGACCTT+AGG | - | chr7_3:3869739-3869758 | None:intergenic | 25.0% |
| !! | TGTCATTTAGGTTATAGTTT+AGG | + | chr7_3:3869788-3869807 | Msa1090150:intron | 25.0% |
| ! | TTCATGAATTGATATGCTTT+AGG | - | chr7_3:3869869-3869888 | None:intergenic | 25.0% |
| ! | ATTAGGGACGAATATATATA+CGG | - | chr7_3:3869920-3869939 | None:intergenic | 25.0% |
| ! | TTAGCAAGCTACTAAAATTA+GGG | - | chr7_3:3869936-3869955 | None:intergenic | 25.0% |
| ! | ATTAGCAAGCTACTAAAATT+AGG | - | chr7_3:3869937-3869956 | None:intergenic | 25.0% |
| GAGTGAATATTGCAAAAATC+AGG | - | chr7_3:3868025-3868044 | None:intergenic | 30.0% | |
| ! | AAGAAAAACTATGTTGGTTG+AGG | + | chr7_3:3868104-3868123 | Msa1090150:CDS | 30.0% |
| AATATGTCAATACCGTAGAA+AGG | - | chr7_3:3868259-3868278 | None:intergenic | 30.0% | |
| !! | TTCTACGGTATTGACATATT+TGG | + | chr7_3:3868259-3868278 | Msa1090150:intron | 30.0% |
| ! | TTTTCGGTTACACACATATT+TGG | + | chr7_3:3868289-3868308 | Msa1090150:intron | 30.0% |
| CAAATTGAATTAGTACCAAG+AGG | + | chr7_3:3868602-3868621 | Msa1090150:intron | 30.0% | |
| TAGCACTTATCACAAATTAC+AGG | + | chr7_3:3868668-3868687 | Msa1090150:intron | 30.0% | |
| AGCACTTATCACAAATTACA+GGG | + | chr7_3:3868669-3868688 | Msa1090150:intron | 30.0% | |
| TAATTCAGTACAGCTGTATA+TGG | + | chr7_3:3868730-3868749 | Msa1090150:intron | 30.0% | |
| TATGAAGCTATGCTATATGT+AGG | + | chr7_3:3868760-3868779 | Msa1090150:intron | 30.0% | |
| ATTAAAAAATGCTTAGGTGG+TGG | + | chr7_3:3868853-3868872 | Msa1090150:CDS | 30.0% | |
| TTAAAAAATGCTTAGGTGGT+GGG | + | chr7_3:3868854-3868873 | Msa1090150:CDS | 30.0% | |
| !! | TTTTGAGAGAAAGAATGTTG+AGG | + | chr7_3:3868965-3868984 | Msa1090150:CDS | 30.0% |
| ! | TATTTAGGGTTGTCATTAAC+TGG | + | chr7_3:3869295-3869314 | Msa1090150:intron | 30.0% |
| ! | ATTTAGGGTTGTCATTAACT+GGG | + | chr7_3:3869296-3869315 | Msa1090150:intron | 30.0% |
| !!! | CGCAAATTTTTAAAGTTACC+TGG | + | chr7_3:3869558-3869577 | Msa1090150:intron | 30.0% |
| ! | TGAAGAGTTAATTTTCAACC+AGG | - | chr7_3:3869579-3869598 | None:intergenic | 30.0% |
| ! | TTCTGGATTTGAAATTCCTA+AGG | + | chr7_3:3869720-3869739 | Msa1090150:intron | 30.0% |
| ! | AATTGATATGCTTTAGGCAA+AGG | - | chr7_3:3869863-3869882 | None:intergenic | 30.0% |
| GAGTGAATATTGCAAAAATC+AGG | - | chr7_3:3868025-3868044 | None:intergenic | 30.0% | |
| ! | AAGAAAAACTATGTTGGTTG+AGG | + | chr7_3:3868104-3868123 | Msa1090150:CDS | 30.0% |
| AATATGTCAATACCGTAGAA+AGG | - | chr7_3:3868259-3868278 | None:intergenic | 30.0% | |
| !! | TTCTACGGTATTGACATATT+TGG | + | chr7_3:3868259-3868278 | Msa1090150:intron | 30.0% |
| ! | TTTTCGGTTACACACATATT+TGG | + | chr7_3:3868289-3868308 | Msa1090150:intron | 30.0% |
| CAAATTGAATTAGTACCAAG+AGG | + | chr7_3:3868602-3868621 | Msa1090150:intron | 30.0% | |
| TAGCACTTATCACAAATTAC+AGG | + | chr7_3:3868668-3868687 | Msa1090150:intron | 30.0% | |
| AGCACTTATCACAAATTACA+GGG | + | chr7_3:3868669-3868688 | Msa1090150:intron | 30.0% | |
| TAATTCAGTACAGCTGTATA+TGG | + | chr7_3:3868730-3868749 | Msa1090150:intron | 30.0% | |
| TATGAAGCTATGCTATATGT+AGG | + | chr7_3:3868760-3868779 | Msa1090150:intron | 30.0% | |
| ATTAAAAAATGCTTAGGTGG+TGG | + | chr7_3:3868853-3868872 | Msa1090150:CDS | 30.0% | |
| TTAAAAAATGCTTAGGTGGT+GGG | + | chr7_3:3868854-3868873 | Msa1090150:CDS | 30.0% | |
| !! | TTTTGAGAGAAAGAATGTTG+AGG | + | chr7_3:3868965-3868984 | Msa1090150:CDS | 30.0% |
| ! | TATTTAGGGTTGTCATTAAC+TGG | + | chr7_3:3869295-3869314 | Msa1090150:intron | 30.0% |
| ! | ATTTAGGGTTGTCATTAACT+GGG | + | chr7_3:3869296-3869315 | Msa1090150:intron | 30.0% |
| !!! | CGCAAATTTTTAAAGTTACC+TGG | + | chr7_3:3869558-3869577 | Msa1090150:intron | 30.0% |
| ! | TGAAGAGTTAATTTTCAACC+AGG | - | chr7_3:3869579-3869598 | None:intergenic | 30.0% |
| ! | TTCTGGATTTGAAATTCCTA+AGG | + | chr7_3:3869720-3869739 | Msa1090150:intron | 30.0% |
| ! | AATTGATATGCTTTAGGCAA+AGG | - | chr7_3:3869863-3869882 | None:intergenic | 30.0% |
| !! | TTATTGACCTTGTTTCTGCT+TGG | - | chr7_3:3867983-3868002 | None:intergenic | 35.0% |
| GCAAAAATCAGGAGATGTTT+CGG | - | chr7_3:3868014-3868033 | None:intergenic | 35.0% | |
| TATTCACTCAGATTCTTTCG+AGG | + | chr7_3:3868036-3868055 | Msa1090150:CDS | 35.0% | |
| !! | TCTTCCACTGATTCATTACA+TGG | - | chr7_3:3868088-3868107 | None:intergenic | 35.0% |
| CAGTGGAAGAAAAACTATGT+TGG | + | chr7_3:3868098-3868117 | Msa1090150:CDS | 35.0% | |
| ! | GTAGAATTCAACTCTCCTTT+TGG | + | chr7_3:3868148-3868167 | Msa1090150:CDS | 35.0% |
| ACAAGTTTCCTTGTACCAAA+AGG | - | chr7_3:3868166-3868185 | None:intergenic | 35.0% | |
| AAACATCTTCTGCCTTTCTA+CGG | + | chr7_3:3868244-3868263 | Msa1090150:CDS | 35.0% | |
| AACGTAACTCTCACAAGTAT+GGG | - | chr7_3:3868791-3868810 | None:intergenic | 35.0% | |
| TAAAAAATGCTTAGGTGGTG+GGG | + | chr7_3:3868855-3868874 | Msa1090150:CDS | 35.0% | |
| AAGAGGCTTCAAGAAGTAAT+GGG | + | chr7_3:3868925-3868944 | Msa1090150:CDS | 35.0% | |
| CCTTGGTAAAGAAGAAAGAT+GGG | + | chr7_3:3868990-3869009 | Msa1090150:CDS | 35.0% | |
| ACCATTCCAATCTACTTTCT+TGG | + | chr7_3:3869037-3869056 | Msa1090150:CDS | 35.0% | |
| TCCAAGAAAGTAGATTGGAA+TGG | - | chr7_3:3869041-3869060 | None:intergenic | 35.0% | |
| ATTCCAATCTACTTTCTTGG+AGG | + | chr7_3:3869040-3869059 | Msa1090150:CDS | 35.0% | |
| TCAGCTTGTAGTAATGTAAC+TGG | + | chr7_3:3869183-3869202 | Msa1090150:CDS | 35.0% | |
| AGGCTTATTCACCAATACAA+AGG | + | chr7_3:3869234-3869253 | Msa1090150:CDS | 35.0% | |
| AGCATGCAAAACCTTTGTAT+TGG | - | chr7_3:3869248-3869267 | None:intergenic | 35.0% | |
| ! | TTTAGGGTTGTCATTAACTG+GGG | + | chr7_3:3869297-3869316 | Msa1090150:intron | 35.0% |
| ACTCTTCAACCTATGTGAAT+AGG | + | chr7_3:3869591-3869610 | Msa1090150:intron | 35.0% | |
| TTTATTTAGTGGTCCGTATG+TGG | + | chr7_3:3870110-3870129 | Msa1090150:intron | 35.0% | |
| TTGTTCATTAACAGTATCCC+TGG | - | chr7_3:3870219-3870238 | None:intergenic | 35.0% | |
| CGTCAATAGCTTCAATGAAA+AGG | + | chr7_3:3870299-3870318 | Msa1090150:CDS | 35.0% | |
| !! | TTATTGACCTTGTTTCTGCT+TGG | - | chr7_3:3867983-3868002 | None:intergenic | 35.0% |
| GCAAAAATCAGGAGATGTTT+CGG | - | chr7_3:3868014-3868033 | None:intergenic | 35.0% | |
| TATTCACTCAGATTCTTTCG+AGG | + | chr7_3:3868036-3868055 | Msa1090150:CDS | 35.0% | |
| !! | TCTTCCACTGATTCATTACA+TGG | - | chr7_3:3868088-3868107 | None:intergenic | 35.0% |
| CAGTGGAAGAAAAACTATGT+TGG | + | chr7_3:3868098-3868117 | Msa1090150:CDS | 35.0% | |
| ! | GTAGAATTCAACTCTCCTTT+TGG | + | chr7_3:3868148-3868167 | Msa1090150:CDS | 35.0% |
| ACAAGTTTCCTTGTACCAAA+AGG | - | chr7_3:3868166-3868185 | None:intergenic | 35.0% | |
| AAACATCTTCTGCCTTTCTA+CGG | + | chr7_3:3868244-3868263 | Msa1090150:CDS | 35.0% | |
| AACGTAACTCTCACAAGTAT+GGG | - | chr7_3:3868791-3868810 | None:intergenic | 35.0% | |
| TAAAAAATGCTTAGGTGGTG+GGG | + | chr7_3:3868855-3868874 | Msa1090150:CDS | 35.0% | |
| AAGAGGCTTCAAGAAGTAAT+GGG | + | chr7_3:3868925-3868944 | Msa1090150:CDS | 35.0% | |
| CCTTGGTAAAGAAGAAAGAT+GGG | + | chr7_3:3868990-3869009 | Msa1090150:CDS | 35.0% | |
| ACCATTCCAATCTACTTTCT+TGG | + | chr7_3:3869037-3869056 | Msa1090150:CDS | 35.0% | |
| TCCAAGAAAGTAGATTGGAA+TGG | - | chr7_3:3869041-3869060 | None:intergenic | 35.0% | |
| ATTCCAATCTACTTTCTTGG+AGG | + | chr7_3:3869040-3869059 | Msa1090150:CDS | 35.0% | |
| TCAGCTTGTAGTAATGTAAC+TGG | + | chr7_3:3869183-3869202 | Msa1090150:CDS | 35.0% | |
| AGGCTTATTCACCAATACAA+AGG | + | chr7_3:3869234-3869253 | Msa1090150:CDS | 35.0% | |
| AGCATGCAAAACCTTTGTAT+TGG | - | chr7_3:3869248-3869267 | None:intergenic | 35.0% | |
| ! | TTTAGGGTTGTCATTAACTG+GGG | + | chr7_3:3869297-3869316 | Msa1090150:intron | 35.0% |
| ACTCTTCAACCTATGTGAAT+AGG | + | chr7_3:3869591-3869610 | Msa1090150:intron | 35.0% | |
| TTTATTTAGTGGTCCGTATG+TGG | + | chr7_3:3870110-3870129 | Msa1090150:intron | 35.0% | |
| TTGTTCATTAACAGTATCCC+TGG | - | chr7_3:3870219-3870238 | None:intergenic | 35.0% | |
| CGTCAATAGCTTCAATGAAA+AGG | + | chr7_3:3870299-3870318 | Msa1090150:CDS | 35.0% | |
| CTCAGATTCTTTCGAGGATT+TGG | + | chr7_3:3868042-3868061 | Msa1090150:CDS | 40.0% | |
| AGATTCTTTCGAGGATTTGG+TGG | + | chr7_3:3868045-3868064 | Msa1090150:CDS | 40.0% | |
| TGGTTGAGGTCACAAATCAT+TGG | + | chr7_3:3868118-3868137 | Msa1090150:CDS | 40.0% | |
| ! | TCAACTCTCCTTTTGGTACA+AGG | + | chr7_3:3868155-3868174 | Msa1090150:CDS | 40.0% |
| ACTTGTCTATGCTGATCACA+CGG | + | chr7_3:3868180-3868199 | Msa1090150:CDS | 40.0% | |
| GTAGAAAGGCAGAAGATGTT+TGG | - | chr7_3:3868245-3868264 | None:intergenic | 40.0% | |
| GAATTAGTACCAAGAGGATG+AGG | + | chr7_3:3868608-3868627 | Msa1090150:intron | 40.0% | |
| ! | TTCTGTTTTCCTCATCCTCT+TGG | - | chr7_3:3868620-3868639 | None:intergenic | 40.0% |
| CAACGTAACTCTCACAAGTA+TGG | - | chr7_3:3868792-3868811 | None:intergenic | 40.0% | |
| CATACTTGTGAGAGTTACGT+TGG | + | chr7_3:3868790-3868809 | Msa1090150:CDS | 40.0% | |
| TGGAAACAGGACGACAAAAA+TGG | + | chr7_3:3868810-3868829 | Msa1090150:CDS | 40.0% | |
| TACTTCTTGAAGCCTCTTGA+TGG | - | chr7_3:3868923-3868942 | None:intergenic | 40.0% | |
| CAAGAGGCTTCAAGAAGTAA+TGG | + | chr7_3:3868924-3868943 | Msa1090150:CDS | 40.0% | |
| GCCTTGGTAAAGAAGAAAGA+TGG | + | chr7_3:3868989-3869008 | Msa1090150:CDS | 40.0% | |
| CCCATCTTTCTTCTTTACCA+AGG | - | chr7_3:3868993-3869012 | None:intergenic | 40.0% | |
| TGGTAAAGAAGAAAGATGGG+TGG | + | chr7_3:3868993-3869012 | Msa1090150:CDS | 40.0% | |
| ! | GAAAGATGGGTGGTTTTTGT+TGG | + | chr7_3:3869003-3869022 | Msa1090150:CDS | 40.0% |
| AGATTGGAATGGTGCTCATA+GGG | - | chr7_3:3869030-3869049 | None:intergenic | 40.0% | |
| TAGATTGGAATGGTGCTCAT+AGG | - | chr7_3:3869031-3869050 | None:intergenic | 40.0% | |
| TTGCCTCCAAGAAAGTAGAT+TGG | - | chr7_3:3869046-3869065 | None:intergenic | 40.0% | |
| ACTTTCTTGGAGGCAAAGTT+TGG | + | chr7_3:3869050-3869069 | Msa1090150:CDS | 40.0% | |
| !! | AGATTGGCCTTGATGATCAA+GGG | + | chr7_3:3869085-3869104 | Msa1090150:CDS | 40.0% |
| !! | AGCTTTGAAGCTACAACTTG+AGG | + | chr7_3:3869122-3869141 | Msa1090150:CDS | 40.0% |
| !! | CATGCTTTGATTTTGCAGCA+AGG | + | chr7_3:3869262-3869281 | Msa1090150:CDS | 40.0% |
| TTAGGGTTGTCATTAACTGG+GGG | + | chr7_3:3869298-3869317 | Msa1090150:intron | 40.0% | |
| CATGCAGTCTCATATGATGA+CGG | + | chr7_3:3869391-3869410 | Msa1090150:intron | 40.0% | |
| ATGCAGTCTCATATGATGAC+GGG | + | chr7_3:3869392-3869411 | Msa1090150:intron | 40.0% | |
| AACCTATGTGAATAGGTCTC+TGG | + | chr7_3:3869598-3869617 | Msa1090150:intron | 40.0% | |
| TTCCAGAGACCTATTCACAT+AGG | - | chr7_3:3869603-3869622 | None:intergenic | 40.0% | |
| TTTCCAGCAGTGTGAACAAT+TGG | + | chr7_3:3869963-3869982 | Msa1090150:intron | 40.0% | |
| TTCCAGCAGTGTGAACAATT+GGG | + | chr7_3:3869964-3869983 | Msa1090150:intron | 40.0% | |
| CTCATGTCAATCTCCACATA+CGG | - | chr7_3:3870126-3870145 | None:intergenic | 40.0% | |
| TGTGGAGATTGACATGAGAT+CGG | + | chr7_3:3870128-3870147 | Msa1090150:CDS | 40.0% | |
| ! | CTTATGTGGGCTGATGAAAA+CGG | - | chr7_3:3870175-3870194 | None:intergenic | 40.0% |
| ATCAGCCCACATAAGTTTCT+TGG | + | chr7_3:3870180-3870199 | Msa1090150:CDS | 40.0% | |
| ! | TTTTCACCTCCATCAACTTG+TGG | + | chr7_3:3870258-3870277 | Msa1090150:CDS | 40.0% |
| CTCAGATTCTTTCGAGGATT+TGG | + | chr7_3:3868042-3868061 | Msa1090150:CDS | 40.0% | |
| AGATTCTTTCGAGGATTTGG+TGG | + | chr7_3:3868045-3868064 | Msa1090150:CDS | 40.0% | |
| TGGTTGAGGTCACAAATCAT+TGG | + | chr7_3:3868118-3868137 | Msa1090150:CDS | 40.0% | |
| ! | TCAACTCTCCTTTTGGTACA+AGG | + | chr7_3:3868155-3868174 | Msa1090150:CDS | 40.0% |
| ACTTGTCTATGCTGATCACA+CGG | + | chr7_3:3868180-3868199 | Msa1090150:CDS | 40.0% | |
| GTAGAAAGGCAGAAGATGTT+TGG | - | chr7_3:3868245-3868264 | None:intergenic | 40.0% | |
| GAATTAGTACCAAGAGGATG+AGG | + | chr7_3:3868608-3868627 | Msa1090150:intron | 40.0% | |
| ! | TTCTGTTTTCCTCATCCTCT+TGG | - | chr7_3:3868620-3868639 | None:intergenic | 40.0% |
| CAACGTAACTCTCACAAGTA+TGG | - | chr7_3:3868792-3868811 | None:intergenic | 40.0% | |
| CATACTTGTGAGAGTTACGT+TGG | + | chr7_3:3868790-3868809 | Msa1090150:CDS | 40.0% | |
| TGGAAACAGGACGACAAAAA+TGG | + | chr7_3:3868810-3868829 | Msa1090150:CDS | 40.0% | |
| TACTTCTTGAAGCCTCTTGA+TGG | - | chr7_3:3868923-3868942 | None:intergenic | 40.0% | |
| CAAGAGGCTTCAAGAAGTAA+TGG | + | chr7_3:3868924-3868943 | Msa1090150:CDS | 40.0% | |
| GCCTTGGTAAAGAAGAAAGA+TGG | + | chr7_3:3868989-3869008 | Msa1090150:CDS | 40.0% | |
| CCCATCTTTCTTCTTTACCA+AGG | - | chr7_3:3868993-3869012 | None:intergenic | 40.0% | |
| TGGTAAAGAAGAAAGATGGG+TGG | + | chr7_3:3868993-3869012 | Msa1090150:CDS | 40.0% | |
| ! | GAAAGATGGGTGGTTTTTGT+TGG | + | chr7_3:3869003-3869022 | Msa1090150:CDS | 40.0% |
| AGATTGGAATGGTGCTCATA+GGG | - | chr7_3:3869030-3869049 | None:intergenic | 40.0% | |
| TAGATTGGAATGGTGCTCAT+AGG | - | chr7_3:3869031-3869050 | None:intergenic | 40.0% | |
| TTGCCTCCAAGAAAGTAGAT+TGG | - | chr7_3:3869046-3869065 | None:intergenic | 40.0% | |
| ACTTTCTTGGAGGCAAAGTT+TGG | + | chr7_3:3869050-3869069 | Msa1090150:CDS | 40.0% | |
| !! | AGATTGGCCTTGATGATCAA+GGG | + | chr7_3:3869085-3869104 | Msa1090150:CDS | 40.0% |
| !! | AGCTTTGAAGCTACAACTTG+AGG | + | chr7_3:3869122-3869141 | Msa1090150:CDS | 40.0% |
| !! | CATGCTTTGATTTTGCAGCA+AGG | + | chr7_3:3869262-3869281 | Msa1090150:CDS | 40.0% |
| TTAGGGTTGTCATTAACTGG+GGG | + | chr7_3:3869298-3869317 | Msa1090150:intron | 40.0% | |
| CATGCAGTCTCATATGATGA+CGG | + | chr7_3:3869391-3869410 | Msa1090150:intron | 40.0% | |
| ATGCAGTCTCATATGATGAC+GGG | + | chr7_3:3869392-3869411 | Msa1090150:intron | 40.0% | |
| AACCTATGTGAATAGGTCTC+TGG | + | chr7_3:3869598-3869617 | Msa1090150:intron | 40.0% | |
| TTCCAGAGACCTATTCACAT+AGG | - | chr7_3:3869603-3869622 | None:intergenic | 40.0% | |
| TTTCCAGCAGTGTGAACAAT+TGG | + | chr7_3:3869963-3869982 | Msa1090150:intron | 40.0% | |
| TTCCAGCAGTGTGAACAATT+GGG | + | chr7_3:3869964-3869983 | Msa1090150:intron | 40.0% | |
| CTCATGTCAATCTCCACATA+CGG | - | chr7_3:3870126-3870145 | None:intergenic | 40.0% | |
| TGTGGAGATTGACATGAGAT+CGG | + | chr7_3:3870128-3870147 | Msa1090150:CDS | 40.0% | |
| ! | CTTATGTGGGCTGATGAAAA+CGG | - | chr7_3:3870175-3870194 | None:intergenic | 40.0% |
| ATCAGCCCACATAAGTTTCT+TGG | + | chr7_3:3870180-3870199 | Msa1090150:CDS | 40.0% | |
| ! | TTTTCACCTCCATCAACTTG+TGG | + | chr7_3:3870258-3870277 | Msa1090150:CDS | 40.0% |
| TGACGACGGTAGAACAAACT+TGG | + | chr7_3:3867918-3867937 | Msa1090150:CDS | 45.0% | |
| CATAGCTCCAAGCAGAAACA+AGG | + | chr7_3:3867973-3867992 | Msa1090150:CDS | 45.0% | |
| !! | TTCGAGGATTTGGTGGAGAT+AGG | + | chr7_3:3868052-3868071 | Msa1090150:CDS | 45.0% |
| !! | CCACTGATTCATTACATGGC+AGG | - | chr7_3:3868084-3868103 | None:intergenic | 45.0% |
| CCTGCCATGTAATGAATCAG+TGG | + | chr7_3:3868081-3868100 | Msa1090150:CDS | 45.0% | |
| GTGAGAGTTACGTTGGAAAC+AGG | + | chr7_3:3868797-3868816 | Msa1090150:CDS | 45.0% | |
| ! | GAAAGAATGTTGAGGTGCCT+TGG | + | chr7_3:3868973-3868992 | Msa1090150:CDS | 45.0% |
| TTGGCTGAGGTTGTAGAGAT+TGG | + | chr7_3:3869069-3869088 | Msa1090150:CDS | 45.0% | |
| !! | GAGATTGGCCTTGATGATCA+AGG | + | chr7_3:3869084-3869103 | Msa1090150:CDS | 45.0% |
| CAAGCAACCCTTGATCATCA+AGG | - | chr7_3:3869095-3869114 | None:intergenic | 45.0% | |
| TGATCAAGGGTTGCTTGACA+TGG | + | chr7_3:3869098-3869117 | Msa1090150:CDS | 45.0% | |
| AGATACCAATCGACCCTTGT+TGG | + | chr7_3:3869152-3869171 | Msa1090150:CDS | 45.0% | |
| GATACCAATCGACCCTTGTT+GGG | + | chr7_3:3869153-3869172 | Msa1090150:CDS | 45.0% | |
| GCTGAGAAAGATCCCAACAA+GGG | - | chr7_3:3869168-3869187 | None:intergenic | 45.0% | |
| AGCTGAGAAAGATCCCAACA+AGG | - | chr7_3:3869169-3869188 | None:intergenic | 45.0% | |
| CAGATACACGAGCAATTGCT+AGG | + | chr7_3:3869214-3869233 | Msa1090150:CDS | 45.0% | |
| CGTCATCATATGAGACTGCA+TGG | - | chr7_3:3869393-3869412 | None:intergenic | 45.0% | |
| ATAGGAGAGTGATTGGAGCA+TGG | + | chr7_3:3869438-3869457 | Msa1090150:intron | 45.0% | |
| GTGGAGATTGACATGAGATC+GGG | + | chr7_3:3870129-3870148 | Msa1090150:CDS | 45.0% | |
| TGGAGATTGACATGAGATCG+GGG | + | chr7_3:3870130-3870149 | Msa1090150:CDS | 45.0% | |
| ATGAGATCGGGGGAAATTGA+TGG | + | chr7_3:3870141-3870160 | Msa1090150:CDS | 45.0% | |
| AGCCCACATAAGTTTCTTGG+TGG | + | chr7_3:3870183-3870202 | Msa1090150:CDS | 45.0% | |
| GGCCACCAAGAAACTTATGT+GGG | - | chr7_3:3870188-3870207 | None:intergenic | 45.0% | |
| TGACGACGGTAGAACAAACT+TGG | + | chr7_3:3867918-3867937 | Msa1090150:CDS | 45.0% | |
| CATAGCTCCAAGCAGAAACA+AGG | + | chr7_3:3867973-3867992 | Msa1090150:CDS | 45.0% | |
| !! | TTCGAGGATTTGGTGGAGAT+AGG | + | chr7_3:3868052-3868071 | Msa1090150:CDS | 45.0% |
| !! | CCACTGATTCATTACATGGC+AGG | - | chr7_3:3868084-3868103 | None:intergenic | 45.0% |
| CCTGCCATGTAATGAATCAG+TGG | + | chr7_3:3868081-3868100 | Msa1090150:CDS | 45.0% | |
| GTGAGAGTTACGTTGGAAAC+AGG | + | chr7_3:3868797-3868816 | Msa1090150:CDS | 45.0% | |
| ! | GAAAGAATGTTGAGGTGCCT+TGG | + | chr7_3:3868973-3868992 | Msa1090150:CDS | 45.0% |
| TTGGCTGAGGTTGTAGAGAT+TGG | + | chr7_3:3869069-3869088 | Msa1090150:CDS | 45.0% | |
| !! | GAGATTGGCCTTGATGATCA+AGG | + | chr7_3:3869084-3869103 | Msa1090150:CDS | 45.0% |
| CAAGCAACCCTTGATCATCA+AGG | - | chr7_3:3869095-3869114 | None:intergenic | 45.0% | |
| TGATCAAGGGTTGCTTGACA+TGG | + | chr7_3:3869098-3869117 | Msa1090150:CDS | 45.0% | |
| AGATACCAATCGACCCTTGT+TGG | + | chr7_3:3869152-3869171 | Msa1090150:CDS | 45.0% | |
| GATACCAATCGACCCTTGTT+GGG | + | chr7_3:3869153-3869172 | Msa1090150:CDS | 45.0% | |
| GCTGAGAAAGATCCCAACAA+GGG | - | chr7_3:3869168-3869187 | None:intergenic | 45.0% | |
| AGCTGAGAAAGATCCCAACA+AGG | - | chr7_3:3869169-3869188 | None:intergenic | 45.0% | |
| CAGATACACGAGCAATTGCT+AGG | + | chr7_3:3869214-3869233 | Msa1090150:CDS | 45.0% | |
| CGTCATCATATGAGACTGCA+TGG | - | chr7_3:3869393-3869412 | None:intergenic | 45.0% | |
| ATAGGAGAGTGATTGGAGCA+TGG | + | chr7_3:3869438-3869457 | Msa1090150:intron | 45.0% | |
| GTGGAGATTGACATGAGATC+GGG | + | chr7_3:3870129-3870148 | Msa1090150:CDS | 45.0% | |
| TGGAGATTGACATGAGATCG+GGG | + | chr7_3:3870130-3870149 | Msa1090150:CDS | 45.0% | |
| ATGAGATCGGGGGAAATTGA+TGG | + | chr7_3:3870141-3870160 | Msa1090150:CDS | 45.0% | |
| AGCCCACATAAGTTTCTTGG+TGG | + | chr7_3:3870183-3870202 | Msa1090150:CDS | 45.0% | |
| GGCCACCAAGAAACTTATGT+GGG | - | chr7_3:3870188-3870207 | None:intergenic | 45.0% | |
| GACGATGCACTCATGCTATG+CGG | + | chr7_3:3868880-3868899 | Msa1090150:CDS | 50.0% | |
| TTGGAGGCAAAGTTTGGCTG+AGG | + | chr7_3:3869056-3869075 | Msa1090150:CDS | 50.0% | |
| AGATCCCAACAAGGGTCGAT+TGG | - | chr7_3:3869160-3869179 | None:intergenic | 50.0% | |
| GAGAGTGATTGGAGCATGGA+GGG | + | chr7_3:3869442-3869461 | Msa1090150:intron | 50.0% | |
| ATTGGAGCATGGAGGGAGAT+GGG | + | chr7_3:3869449-3869468 | Msa1090150:intron | 50.0% | |
| ! | ATGGAGGGAGATGGGTTTGA+TGG | + | chr7_3:3869457-3869476 | Msa1090150:intron | 50.0% |
| GACCCAATTGTTCACACTGC+TGG | - | chr7_3:3869969-3869988 | None:intergenic | 50.0% | |
| GGAGATTGACATGAGATCGG+GGG | + | chr7_3:3870131-3870150 | Msa1090150:CDS | 50.0% | |
| GGGCCACCAAGAAACTTATG+TGG | - | chr7_3:3870189-3870208 | None:intergenic | 50.0% | |
| ACAGTATCCCTGGAGAGTCA+GGG | - | chr7_3:3870209-3870228 | None:intergenic | 50.0% | |
| AACAGTATCCCTGGAGAGTC+AGG | - | chr7_3:3870210-3870229 | None:intergenic | 50.0% | |
| TCACCTCCATCAACTTGTGG+AGG | + | chr7_3:3870261-3870280 | Msa1090150:CDS | 50.0% | |
| ! | GTACCACCTCCACAAGTTGA+TGG | - | chr7_3:3870270-3870289 | None:intergenic | 50.0% |
| GACGATGCACTCATGCTATG+CGG | + | chr7_3:3868880-3868899 | Msa1090150:CDS | 50.0% | |
| TTGGAGGCAAAGTTTGGCTG+AGG | + | chr7_3:3869056-3869075 | Msa1090150:CDS | 50.0% | |
| AGATCCCAACAAGGGTCGAT+TGG | - | chr7_3:3869160-3869179 | None:intergenic | 50.0% | |
| GAGAGTGATTGGAGCATGGA+GGG | + | chr7_3:3869442-3869461 | Msa1090150:intron | 50.0% | |
| ATTGGAGCATGGAGGGAGAT+GGG | + | chr7_3:3869449-3869468 | Msa1090150:intron | 50.0% | |
| ! | ATGGAGGGAGATGGGTTTGA+TGG | + | chr7_3:3869457-3869476 | Msa1090150:intron | 50.0% |
| GACCCAATTGTTCACACTGC+TGG | - | chr7_3:3869969-3869988 | None:intergenic | 50.0% | |
| GGAGATTGACATGAGATCGG+GGG | + | chr7_3:3870131-3870150 | Msa1090150:CDS | 50.0% | |
| GGGCCACCAAGAAACTTATG+TGG | - | chr7_3:3870189-3870208 | None:intergenic | 50.0% | |
| ACAGTATCCCTGGAGAGTCA+GGG | - | chr7_3:3870209-3870228 | None:intergenic | 50.0% | |
| AACAGTATCCCTGGAGAGTC+AGG | - | chr7_3:3870210-3870229 | None:intergenic | 50.0% | |
| TCACCTCCATCAACTTGTGG+AGG | + | chr7_3:3870261-3870280 | Msa1090150:CDS | 50.0% | |
| ! | GTACCACCTCCACAAGTTGA+TGG | - | chr7_3:3870270-3870289 | None:intergenic | 50.0% |
| TATGCTGATCACACGGCCTC+AGG | + | chr7_3:3868187-3868206 | Msa1090150:CDS | 55.0% | |
| GAAGTGAAGACTGCGACCTG+AGG | - | chr7_3:3868206-3868225 | None:intergenic | 55.0% | |
| TGCACTCATGCTATGCGGCT+CGG | + | chr7_3:3868885-3868904 | Msa1090150:CDS | 55.0% | |
| GGAGAGTGATTGGAGCATGG+AGG | + | chr7_3:3869441-3869460 | Msa1090150:intron | 55.0% | |
| GATTGGAGCATGGAGGGAGA+TGG | + | chr7_3:3869448-3869467 | Msa1090150:intron | 55.0% | |
| !! | CCACCTCCACAAGTTGATGG+AGG | - | chr7_3:3870267-3870286 | None:intergenic | 55.0% |
| CCTCCATCAACTTGTGGAGG+TGG | + | chr7_3:3870264-3870283 | Msa1090150:CDS | 55.0% | |
| TATGCTGATCACACGGCCTC+AGG | + | chr7_3:3868187-3868206 | Msa1090150:CDS | 55.0% | |
| GAAGTGAAGACTGCGACCTG+AGG | - | chr7_3:3868206-3868225 | None:intergenic | 55.0% | |
| TGCACTCATGCTATGCGGCT+CGG | + | chr7_3:3868885-3868904 | Msa1090150:CDS | 55.0% | |
| GGAGAGTGATTGGAGCATGG+AGG | + | chr7_3:3869441-3869460 | Msa1090150:intron | 55.0% | |
| GATTGGAGCATGGAGGGAGA+TGG | + | chr7_3:3869448-3869467 | Msa1090150:intron | 55.0% | |
| !! | CCACCTCCACAAGTTGATGG+AGG | - | chr7_3:3870267-3870286 | None:intergenic | 55.0% |
| CCTCCATCAACTTGTGGAGG+TGG | + | chr7_3:3870264-3870283 | Msa1090150:CDS | 55.0% | |
| GCACTCATGCTATGCGGCTC+GGG | + | chr7_3:3868886-3868905 | Msa1090150:CDS | 60.0% | |
| GCACAACGGCAGCCATCAAG+AGG | + | chr7_3:3868908-3868927 | Msa1090150:CDS | 60.0% | |
| ! | TTGGTGGCCCTGACTCTCCA+GGG | + | chr7_3:3870199-3870218 | Msa1090150:CDS | 60.0% |
| GCACTCATGCTATGCGGCTC+GGG | + | chr7_3:3868886-3868905 | Msa1090150:CDS | 60.0% | |
| GCACAACGGCAGCCATCAAG+AGG | + | chr7_3:3868908-3868927 | Msa1090150:CDS | 60.0% | |
| ! | TTGGTGGCCCTGACTCTCCA+GGG | + | chr7_3:3870199-3870218 | Msa1090150:CDS | 60.0% |
| ! | GCTATGCGGCTCGGGCACAA+CGG | + | chr7_3:3868894-3868913 | Msa1090150:CDS | 65.0% |
| ! | CTTGGTGGCCCTGACTCTCC+AGG | + | chr7_3:3870198-3870217 | Msa1090150:CDS | 65.0% |
| ! | GCTATGCGGCTCGGGCACAA+CGG | + | chr7_3:3868894-3868913 | Msa1090150:CDS | 65.0% |
| ! | CTTGGTGGCCCTGACTCTCC+AGG | + | chr7_3:3870198-3870217 | Msa1090150:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 3867914 | 3870341 | 3867914 | ID=Msa1090150;Name=Msa1090150 |
| chr7_3 | mRNA | 3867914 | 3870341 | 3867914 | ID=Msa1090150-mRNA-1;Parent=Msa1090150;Name=Msa1090150-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0|1|1|1|3|0|358 |
| chr7_3 | exon | 3867914 | 3868265 | 3867914 | ID=Msa1090150-mRNA-1:exon:1479;Parent=Msa1090150-mRNA-1 |
| chr7_3 | exon | 3868782 | 3869283 | 3868782 | ID=Msa1090150-mRNA-1:exon:1480;Parent=Msa1090150-mRNA-1 |
| chr7_3 | exon | 3870119 | 3870341 | 3870119 | ID=Msa1090150-mRNA-1:exon:1481;Parent=Msa1090150-mRNA-1 |
| chr7_3 | CDS | 3867914 | 3868265 | 3867914 | ID=Msa1090150-mRNA-1:cds;Parent=Msa1090150-mRNA-1 |
| chr7_3 | CDS | 3868782 | 3869283 | 3868782 | ID=Msa1090150-mRNA-1:cds;Parent=Msa1090150-mRNA-1 |
| chr7_3 | CDS | 3870119 | 3870341 | 3870119 | ID=Msa1090150-mRNA-1:cds;Parent=Msa1090150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
