Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569100 | XP_003630257.1 | 95.787 | 356 | 14 | 1 | 1 | 355 | 1 | 356 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569100 | sp|Q9V242|CSD_PYRAB | 24.910 | 277 | 174 | 10 | 75 | 346 | 3 | 250 | 5.77e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569100 | G7LE11 | 95.787 | 356 | 14 | 1 | 1 | 355 | 1 | 356 | 0.0 | 711 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0569100 | 0.803613 | 3.206553e-49 | -8.615850e-47 |
| Msa0014590 | Msa0569100 | 0.818810 | 1.614199e-52 | -8.615850e-47 |
| Msa0040210 | Msa0569100 | 0.822684 | 2.076441e-53 | -8.615850e-47 |
| Msa0059420 | Msa0569100 | 0.800719 | 1.262962e-48 | -8.615850e-47 |
| Msa0059880 | Msa0569100 | 0.814530 | 1.470396e-51 | -8.615850e-47 |
| Msa0064990 | Msa0569100 | 0.824667 | 7.130582e-54 | -8.615850e-47 |
| Msa0072390 | Msa0569100 | -0.810791 | 9.669497e-51 | -8.615850e-47 |
| Msa0081700 | Msa0569100 | -0.803339 | 3.653727e-49 | -8.615850e-47 |
| Msa0087900 | Msa0569100 | 0.807916 | 4.001565e-50 | -8.615850e-47 |
| Msa0108350 | Msa0569100 | 0.811544 | 6.640766e-51 | -8.615850e-47 |
| Msa0120860 | Msa0569100 | 0.809435 | 1.894953e-50 | -8.615850e-47 |
| Msa0125860 | Msa0569100 | 0.804061 | 2.588281e-49 | -8.615850e-47 |
| Msa0127910 | Msa0569100 | -0.800665 | 1.295822e-48 | -8.615850e-47 |
| Msa0134570 | Msa0569100 | 0.823156 | 1.611917e-53 | -8.615850e-47 |
| Msa0138340 | Msa0569100 | -0.803676 | 3.111739e-49 | -8.615850e-47 |
| Msa0147960 | Msa0569100 | -0.802957 | 4.384114e-49 | -8.615850e-47 |
| Msa0150910 | Msa0569100 | 0.827312 | 1.677281e-54 | -8.615850e-47 |
| Msa0177260 | Msa0569100 | 0.801611 | 8.296274e-49 | -8.615850e-47 |
| Msa0180100 | Msa0569100 | -0.805462 | 1.319734e-49 | -8.615850e-47 |
| Msa0184510 | Msa0569100 | -0.810441 | 1.150666e-50 | -8.615850e-47 |
| Msa0190670 | Msa0569100 | 0.833497 | 5.156515e-56 | -8.615850e-47 |
| Msa0190890 | Msa0569100 | 0.818334 | 2.068895e-52 | -8.615850e-47 |
| Msa0207640 | Msa0569100 | 0.811898 | 5.561197e-51 | -8.615850e-47 |
| Msa0212550 | Msa0569100 | 0.811821 | 5.778732e-51 | -8.615850e-47 |
| Msa0220090 | Msa0569100 | 0.834255 | 3.331323e-56 | -8.615850e-47 |
| Msa0224210 | Msa0569100 | 0.814882 | 1.228554e-51 | -8.615850e-47 |
| Msa0225070 | Msa0569100 | -0.832093 | 1.150762e-55 | -8.615850e-47 |
| Msa0233210 | Msa0569100 | 0.801044 | 1.084279e-48 | -8.615850e-47 |
| Msa0238140 | Msa0569100 | 0.834194 | 3.451306e-56 | -8.615850e-47 |
| Msa0368620 | Msa0569100 | 0.813203 | 2.883245e-51 | -8.615850e-47 |
| Msa0369760 | Msa0569100 | 0.807484 | 4.943076e-50 | -8.615850e-47 |
| Msa0374040 | Msa0569100 | 0.821051 | 4.957503e-53 | -8.615850e-47 |
| Msa0380700 | Msa0569100 | 0.809821 | 1.565380e-50 | -8.615850e-47 |
| Msa0389710 | Msa0569100 | 0.819795 | 9.626191e-53 | -8.615850e-47 |
| Msa0390590 | Msa0569100 | -0.803316 | 3.695376e-49 | -8.615850e-47 |
| Msa0390790 | Msa0569100 | 0.813502 | 2.477487e-51 | -8.615850e-47 |
| Msa0398770 | Msa0569100 | 0.829928 | 3.911770e-55 | -8.615850e-47 |
| Msa0403740 | Msa0569100 | -0.803139 | 4.019848e-49 | -8.615850e-47 |
| Msa0416040 | Msa0569100 | 0.831741 | 1.405775e-55 | -8.615850e-47 |
| Msa0430340 | Msa0569100 | 0.810317 | 1.224296e-50 | -8.615850e-47 |
| Msa0456450 | Msa0569100 | -0.805578 | 1.247600e-49 | -8.615850e-47 |
| Msa0463970 | Msa0569100 | 0.809726 | 1.641097e-50 | -8.615850e-47 |
| Msa0469450 | Msa0569100 | 0.804144 | 2.487761e-49 | -8.615850e-47 |
| Msa0480260 | Msa0569100 | 0.814587 | 1.428207e-51 | -8.615850e-47 |
| Msa0246140 | Msa0569100 | 0.805440 | 1.333866e-49 | -8.615850e-47 |
| Msa0251120 | Msa0569100 | 0.823272 | 1.514256e-53 | -8.615850e-47 |
| Msa0252930 | Msa0569100 | 0.817548 | 3.114412e-52 | -8.615850e-47 |
| Msa0261400 | Msa0569100 | 0.820780 | 5.723972e-53 | -8.615850e-47 |
| Msa0271660 | Msa0569100 | 0.827651 | 1.391023e-54 | -8.615850e-47 |
| Msa0272210 | Msa0569100 | 0.815048 | 1.128633e-51 | -8.615850e-47 |
| Msa0274250 | Msa0569100 | 0.810554 | 1.088266e-50 | -8.615850e-47 |
| Msa0275560 | Msa0569100 | 0.816125 | 6.497465e-52 | -8.615850e-47 |
| Msa0275570 | Msa0569100 | 0.804687 | 1.916959e-49 | -8.615850e-47 |
| Msa0276580 | Msa0569100 | 0.810128 | 1.344762e-50 | -8.615850e-47 |
| Msa0278480 | Msa0569100 | 0.814523 | 1.475714e-51 | -8.615850e-47 |
| Msa0284730 | Msa0569100 | 0.822495 | 2.297296e-53 | -8.615850e-47 |
| Msa0304060 | Msa0569100 | -0.806842 | 6.760236e-50 | -8.615850e-47 |
| Msa0316600 | Msa0569100 | 0.807946 | 3.942507e-50 | -8.615850e-47 |
| Msa0364030 | Msa0569100 | -0.802771 | 4.789922e-49 | -8.615850e-47 |
| Msa0508160 | Msa0569100 | 0.812572 | 3.962700e-51 | -8.615850e-47 |
| Msa0509520 | Msa0569100 | 0.814698 | 1.349550e-51 | -8.615850e-47 |
| Msa0527210 | Msa0569100 | -0.800437 | 1.441570e-48 | -8.615850e-47 |
| Msa0537210 | Msa0569100 | 0.812064 | 5.114998e-51 | -8.615850e-47 |
| Msa0538050 | Msa0569100 | -0.831675 | 1.459322e-55 | -8.615850e-47 |
| Msa0560280 | Msa0569100 | 0.820261 | 7.531984e-53 | -8.615850e-47 |
| Msa0561420 | Msa0569100 | -0.816580 | 5.140636e-52 | -8.615850e-47 |
| Msa0566930 | Msa0569100 | 0.806858 | 6.708040e-50 | -8.615850e-47 |
| Msa0569100 | Msa0569130 | 0.879674 | 1.027808e-69 | -8.615850e-47 |
| Msa0569100 | Msa0580210 | 0.893596 | 5.424956e-75 | -8.615850e-47 |
| Msa0569100 | Msa0584370 | 0.812762 | 3.602160e-51 | -8.615850e-47 |
| Msa0569100 | Msa0585720 | -0.827368 | 1.625792e-54 | -8.615850e-47 |
| Msa0569100 | Msa0593600 | 0.805802 | 1.119535e-49 | -8.615850e-47 |
| Msa0569100 | Msa0612580 | 0.804539 | 2.057622e-49 | -8.615850e-47 |
| Msa0569100 | Msa0614290 | 0.825595 | 4.302087e-54 | -8.615850e-47 |
| Msa0569100 | Msa0615430 | -0.805767 | 1.138864e-49 | -8.615850e-47 |
| Msa0569100 | Msa0623770 | 0.800798 | 1.217307e-48 | -8.615850e-47 |
| Msa0569100 | Msa0625900 | -0.818657 | 1.748358e-52 | -8.615850e-47 |
| Msa0569100 | Msa0632040 | -0.820974 | 5.166363e-53 | -8.615850e-47 |
| Msa0569100 | Msa0633630 | 0.811780 | 5.899816e-51 | -8.615850e-47 |
| Msa0569100 | Msa0638820 | 0.827543 | 1.476016e-54 | -8.615850e-47 |
| Msa0569100 | Msa0649250 | -0.801146 | 1.033447e-48 | -8.615850e-47 |
| Msa0569100 | Msa0654880 | -0.807532 | 4.826994e-50 | -8.615850e-47 |
| Msa0569100 | Msa0660070 | -0.804447 | 2.150720e-49 | -8.615850e-47 |
| Msa0569100 | Msa0663580 | -0.822151 | 2.761992e-53 | -8.615850e-47 |
| Msa0569100 | Msa0663690 | -0.818101 | 2.336928e-52 | -8.615850e-47 |
| Msa0569100 | Msa0671640 | 0.852072 | 5.868043e-61 | -8.615850e-47 |
| Msa0569100 | Msa0695630 | 0.830500 | 2.836331e-55 | -8.615850e-47 |
| Msa0569100 | Msa0697510 | 0.808913 | 2.451257e-50 | -8.615850e-47 |
| Msa0569100 | Msa0697520 | 0.829065 | 6.341391e-55 | -8.615850e-47 |
| Msa0569100 | Msa0698650 | -0.803097 | 4.101939e-49 | -8.615850e-47 |
| Msa0569100 | Msa0702020 | -0.802604 | 5.186132e-49 | -8.615850e-47 |
| Msa0569100 | Msa0705520 | 0.899681 | 1.557425e-77 | -8.615850e-47 |
| Msa0569100 | Msa0706130 | -0.812522 | 4.064961e-51 | -8.615850e-47 |
| Msa0569100 | Msa0707880 | -0.802714 | 4.919977e-49 | -8.615850e-47 |
| Msa0569100 | Msa0711260 | 0.817776 | 2.766300e-52 | -8.615850e-47 |
| Msa0569100 | Msa0721930 | 0.801123 | 1.044624e-48 | -8.615850e-47 |
| Msa0569100 | Msa0724440 | 0.807078 | 6.023971e-50 | -8.615850e-47 |
| Msa0569100 | Msa0751960 | 0.823719 | 1.190388e-53 | -8.615850e-47 |
| Msa0569100 | Msa0762930 | 0.803363 | 3.613413e-49 | -8.615850e-47 |
| Msa0569100 | Msa0777070 | 0.810383 | 1.184884e-50 | -8.615850e-47 |
| Msa0569100 | Msa0789220 | 0.814076 | 1.852429e-51 | -8.615850e-47 |
| Msa0569100 | Msa0804170 | 0.800977 | 1.118951e-48 | -8.615850e-47 |
| Msa0569100 | Msa0806930 | 0.810024 | 1.415664e-50 | -8.615850e-47 |
| Msa0569100 | Msa0814160 | 0.847002 | 1.523379e-59 | -8.615850e-47 |
| Msa0569100 | Msa0826370 | 0.802042 | 6.769710e-49 | -8.615850e-47 |
| Msa0569100 | Msa0831890 | 0.808775 | 2.623877e-50 | -8.615850e-47 |
| Msa0569100 | Msa0854840 | 0.823244 | 1.537481e-53 | -8.615850e-47 |
| Msa0569100 | Msa0861400 | -0.811285 | 7.556051e-51 | -8.615850e-47 |
| Msa0569100 | Msa0861730 | 0.800896 | 1.162227e-48 | -8.615850e-47 |
| Msa0569100 | Msa0861820 | 0.801057 | 1.077433e-48 | -8.615850e-47 |
| Msa0569100 | Msa0898830 | -0.805827 | 1.106034e-49 | -8.615850e-47 |
| Msa0569100 | Msa0914710 | 0.805415 | 1.349620e-49 | -8.615850e-47 |
| Msa0569100 | Msa0917630 | -0.811031 | 8.577794e-51 | -8.615850e-47 |
| Msa0569100 | Msa0932150 | 0.806864 | 6.688345e-50 | -8.615850e-47 |
| Msa0569100 | Msa0947520 | 0.814666 | 1.371552e-51 | -8.615850e-47 |
| Msa0569100 | Msa0967900 | -0.828702 | 7.764094e-55 | -8.615850e-47 |
| Msa0569100 | Msa1024350 | 0.827524 | 1.491977e-54 | -8.615850e-47 |
| Msa0569100 | Msa1029570 | -0.800417 | 1.455263e-48 | -8.615850e-47 |
| Msa0569100 | Msa1041650 | 0.823538 | 1.312432e-53 | -8.615850e-47 |
| Msa0569100 | Msa1056590 | -0.802133 | 6.483329e-49 | -8.615850e-47 |
| Msa0569100 | Msa1078600 | -0.813191 | 2.900549e-51 | -8.615850e-47 |
| Msa0569100 | Msa1078770 | -0.808978 | 2.373911e-50 | -8.615850e-47 |
| Msa0569100 | Msa1079780 | 0.806278 | 8.890689e-50 | -8.615850e-47 |
| Msa0569100 | Msa1090150 | 0.926628 | 3.609339e-91 | -8.615850e-47 |
| Msa0569100 | Msa1093420 | 0.816744 | 4.722031e-52 | -8.615850e-47 |
| Msa0569100 | Msa1123000 | 0.802384 | 5.755119e-49 | -8.615850e-47 |
| Msa0569100 | Msa1129600 | 0.803254 | 3.805898e-49 | -8.615850e-47 |
| Msa0569100 | Msa1157200 | 0.806079 | 9.790645e-50 | -8.615850e-47 |
| Msa0569100 | Msa1166550 | 0.822742 | 2.013308e-53 | -8.615850e-47 |
| Msa0569100 | Msa1169600 | -0.800648 | 1.305672e-48 | -8.615850e-47 |
| Msa0569100 | Msa1170320 | 0.818148 | 2.279566e-52 | -8.615850e-47 |
| Msa0569100 | Msa1179340 | 0.835644 | 1.487900e-56 | -8.615850e-47 |
| Msa0569100 | Msa1205270 | -0.804326 | 2.279208e-49 | -8.615850e-47 |
| Msa0569100 | Msa1214960 | 0.802338 | 5.882665e-49 | -8.615850e-47 |
| Msa0569100 | Msa1225890 | 0.800834 | 1.196724e-48 | -8.615850e-47 |
| Msa0569100 | Msa1228600 | -0.826387 | 2.789110e-54 | -8.615850e-47 |
| Msa0569100 | Msa1233090 | 0.842614 | 2.321897e-58 | -8.615850e-47 |
| Msa0569100 | Msa1275220 | 0.803490 | 3.400529e-49 | -8.615850e-47 |
| Msa0569100 | Msa1280540 | 0.807981 | 3.875126e-50 | -8.615850e-47 |
| Msa0569100 | Msa1286420 | 0.803308 | 3.708612e-49 | -8.615850e-47 |
| Msa0569100 | Msa1297220 | -0.800304 | 1.534352e-48 | -8.615850e-47 |
| Msa0569100 | Msa1313720 | 0.807966 | 3.903466e-50 | -8.615850e-47 |
| Msa0569100 | Msa1317740 | 0.813432 | 2.567155e-51 | -8.615850e-47 |
| Msa0569100 | Msa1323260 | -0.810108 | 1.357772e-50 | -8.615850e-47 |
| Msa0569100 | Msa1327690 | -0.823334 | 1.464450e-53 | -8.615850e-47 |
| Msa0569100 | Msa1342360 | -0.805591 | 1.239523e-49 | -8.615850e-47 |
| Msa0569100 | Msa1343450 | -0.807204 | 5.664913e-50 | -8.615850e-47 |
| Msa0569100 | Msa1345390 | 0.814160 | 1.774263e-51 | -8.615850e-47 |
| Msa0569100 | Msa1357860 | 0.818646 | 1.758164e-52 | -8.615850e-47 |
| Msa0569100 | Msa1369060 | 0.838134 | 3.443507e-57 | -8.615850e-47 |
| Msa0569100 | Msa1369220 | -0.821757 | 3.407298e-53 | -8.615850e-47 |
| Msa0569100 | Msa1371540 | -0.802456 | 5.563089e-49 | -8.615850e-47 |
| Msa0569100 | Msa1407670 | 0.803321 | 3.685728e-49 | -8.615850e-47 |
| Msa0569100 | Msa1413020 | 0.803788 | 2.949626e-49 | -8.615850e-47 |
| Msa0569100 | Msa1446920 | 0.804054 | 2.596473e-49 | -8.615850e-47 |
| Msa0569100 | Msa1449770 | 0.808930 | 2.431720e-50 | -8.615850e-47 |
| Msa0569100 | Msa1456620 | -0.818044 | 2.406608e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569100 | MtrunA17_Chr8g0384171 | 95.787 | 356 | 14 | 1 | 1 | 355 | 1 | 356 | 0.0 | 711 |
| Msa0569100 | MtrunA17_Chr8g0384181 | 75.758 | 363 | 69 | 5 | 1 | 352 | 16 | 370 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGATTCTTTCGAGGATT+TGG | 0.229032 | 4_1:+70932468 | Msa0569100:CDS |
| CAACGTAACTCTCACAAGTA+TGG | 0.267344 | 4_1:-70933223 | None:intergenic |
| GGGTCGATTGGTATCTTTAC+AGG | 0.268015 | 4_1:-70933579 | None:intergenic |
| ATCAGCCCACATAAGTTTCT+TGG | 0.287833 | 4_1:+70934648 | Msa0569100:CDS |
| ACCATTCCAATCTACTTTCT+TGG | 0.289172 | 4_1:+70933471 | Msa0569100:CDS |
| ATTCTTTCTCTCAAAATAGA+AGG | 0.304064 | 4_1:-70933392 | None:intergenic |
| GTAGAATTCAACTCTCCTTT+TGG | 0.313407 | 4_1:+70932574 | Msa0569100:CDS |
| TACTTCTTGAAGCCTCTTGA+TGG | 0.336697 | 4_1:-70933354 | None:intergenic |
| TCAGCTTGTAGTAATGTAAC+TGG | 0.345040 | 4_1:+70933617 | Msa0569100:CDS |
| ATGCATAACTCAGAAAATAT+TGG | 0.345574 | 4_1:-70932379 | None:intergenic |
| CTTGGTGGCCCTGACTCTCC+AGG | 0.347337 | 4_1:+70934666 | Msa0569100:CDS |
| AACAGTATCCCTGGAGAGTC+AGG | 0.353840 | 4_1:-70934675 | None:intergenic |
| ACTTTCTTGGAGGCAAAGTT+TGG | 0.360742 | 4_1:+70933484 | Msa0569100:CDS |
| TAGATTGGAATGGTGCTCAT+AGG | 0.390775 | 4_1:-70933462 | None:intergenic |
| TTGGCTGAGGTTGTAGAGAT+TGG | 0.398331 | 4_1:+70933503 | Msa0569100:CDS |
| GTGAGAGTTACGTTGGAAAC+AGG | 0.400045 | 4_1:+70933231 | Msa0569100:CDS |
| GCACTCATGCTATGCGGCTC+GGG | 0.419195 | 4_1:+70933320 | Msa0569100:CDS |
| AGCATGCAAAACCTTTGTAT+TGG | 0.421268 | 4_1:-70933679 | None:intergenic |
| TTGCCTCCAAGAAAGTAGAT+TGG | 0.431939 | 4_1:-70933477 | None:intergenic |
| GCCTTGGTAAAGAAGAAAGA+TGG | 0.443504 | 4_1:+70933423 | Msa0569100:CDS |
| AAGAGGCTTCAAGAAGTAAT+GGG | 0.454316 | 4_1:+70933359 | Msa0569100:CDS |
| TATTCACTCAGATTCTTTCG+AGG | 0.454737 | 4_1:+70932462 | Msa0569100:CDS |
| TTCGAGGATTTGGTGGAGAT+AGG | 0.455189 | 4_1:+70932478 | Msa0569100:CDS |
| GAGATTGGCCTTGATGATCA+AGG | 0.455541 | 4_1:+70933518 | Msa0569100:CDS |
| GTAGAAAGGCAGAAGATGTT+TGG | 0.455887 | 4_1:-70932668 | None:intergenic |
| CGTCAATAGCTTCAATGAAA+AGG | 0.456104 | 4_1:+70934767 | Msa0569100:CDS |
| GTGGAGATTGACATGAGATC+GGG | 0.457650 | 4_1:+70934597 | Msa0569100:CDS |
| TTATTGACCTTGTTTCTGCT+TGG | 0.461439 | 4_1:-70932406 | None:intergenic |
| TATGCTGATCACACGGCCTC+AGG | 0.461915 | 4_1:+70932613 | Msa0569100:CDS |
| GATACCAATCGACCCTTGTT+GGG | 0.467394 | 4_1:+70933587 | Msa0569100:CDS |
| TGCACTCATGCTATGCGGCT+CGG | 0.467742 | 4_1:+70933319 | Msa0569100:CDS |
| CAAGAGGCTTCAAGAAGTAA+TGG | 0.469088 | 4_1:+70933358 | Msa0569100:CDS |
| GTACCACCTCCACAAGTTGA+TGG | 0.471883 | 4_1:-70934735 | None:intergenic |
| CCACTGATTCATTACATGGC+AGG | 0.474462 | 4_1:-70932507 | None:intergenic |
| TTGGAGGCAAAGTTTGGCTG+AGG | 0.485112 | 4_1:+70933490 | Msa0569100:CDS |
| ATTCCAATCTACTTTCTTGG+AGG | 0.488539 | 4_1:+70933474 | Msa0569100:CDS |
| TTTATTTAGTGGTCCGTATG+TGG | 0.491567 | 4_1:+70934578 | Msa0569100:intron |
| TCTTCCACTGATTCATTACA+TGG | 0.491814 | 4_1:-70932511 | None:intergenic |
| TTGTTCATTAACAGTATCCC+TGG | 0.497313 | 4_1:-70934684 | None:intergenic |
| ACAAGTTTCCTTGTACCAAA+AGG | 0.497839 | 4_1:-70932589 | None:intergenic |
| AGATTCTTTCGAGGATTTGG+TGG | 0.498052 | 4_1:+70932471 | Msa0569100:CDS |
| AAACATCTTCTGCCTTTCTA+CGG | 0.499154 | 4_1:+70932670 | Msa0569100:CDS |
| GAAAGAATGTTGAGGTGCCT+TGG | 0.502619 | 4_1:+70933407 | Msa0569100:CDS |
| AGATTGGAATGGTGCTCATA+GGG | 0.519242 | 4_1:-70933461 | None:intergenic |
| TGGTTGAGGTCACAAATCAT+TGG | 0.521950 | 4_1:+70932544 | Msa0569100:CDS |
| AGATCCCAACAAGGGTCGAT+TGG | 0.524725 | 4_1:-70933591 | None:intergenic |
| AGATACCAATCGACCCTTGT+TGG | 0.539683 | 4_1:+70933586 | Msa0569100:CDS |
| AATATGTCAATACCGTAGAA+AGG | 0.540918 | 4_1:-70932682 | None:intergenic |
| TTGGTGGCCCTGACTCTCCA+GGG | 0.546252 | 4_1:+70934667 | Msa0569100:CDS |
| GCTATGCGGCTCGGGCACAA+CGG | 0.546918 | 4_1:+70933328 | Msa0569100:CDS |
| CAGATACACGAGCAATTGCT+AGG | 0.548273 | 4_1:+70933648 | Msa0569100:CDS |
| TGTGGAGATTGACATGAGAT+CGG | 0.551632 | 4_1:+70934596 | Msa0569100:CDS |
| TTCTTTCTCTCAAAATAGAA+GGG | 0.555590 | 4_1:-70933391 | None:intergenic |
| AACGTAACTCTCACAAGTAT+GGG | 0.555777 | 4_1:-70933222 | None:intergenic |
| CCTCCATCAACTTGTGGAGG+TGG | 0.555833 | 4_1:+70934732 | Msa0569100:CDS |
| CTTATGTGGGCTGATGAAAA+CGG | 0.557601 | 4_1:-70934640 | None:intergenic |
| TGATCAAGGGTTGCTTGACA+TGG | 0.558737 | 4_1:+70933532 | Msa0569100:CDS |
| TGACGACGGTAGAACAAACT+TGG | 0.559748 | 4_1:+70932344 | Msa0569100:CDS |
| CCCATCTTTCTTCTTTACCA+AGG | 0.575313 | 4_1:-70933424 | None:intergenic |
| GGGCCACCAAGAAACTTATG+TGG | 0.578448 | 4_1:-70934654 | None:intergenic |
| AGCTTTGAAGCTACAACTTG+AGG | 0.579642 | 4_1:+70933556 | Msa0569100:CDS |
| AGCCCACATAAGTTTCTTGG+TGG | 0.581206 | 4_1:+70934651 | Msa0569100:CDS |
| CATAGCTCCAAGCAGAAACA+AGG | 0.584497 | 4_1:+70932399 | Msa0569100:CDS |
| CTCATGTCAATCTCCACATA+CGG | 0.586246 | 4_1:-70934591 | None:intergenic |
| CAAGCAACCCTTGATCATCA+AGG | 0.588411 | 4_1:-70933526 | None:intergenic |
| TCACCTCCATCAACTTGTGG+AGG | 0.592933 | 4_1:+70934729 | Msa0569100:CDS |
| GCACAACGGCAGCCATCAAG+AGG | 0.593525 | 4_1:+70933342 | Msa0569100:CDS |
| CCTGCCATGTAATGAATCAG+TGG | 0.593664 | 4_1:+70932507 | Msa0569100:CDS |
| AGATTGGCCTTGATGATCAA+GGG | 0.600995 | 4_1:+70933519 | Msa0569100:CDS |
| AGGCTTATTCACCAATACAA+AGG | 0.604707 | 4_1:+70933668 | Msa0569100:CDS |
| CATACTTGTGAGAGTTACGT+TGG | 0.611551 | 4_1:+70933224 | Msa0569100:CDS |
| CCTTGGTAAAGAAGAAAGAT+GGG | 0.611773 | 4_1:+70933424 | Msa0569100:CDS |
| ACAGTATCCCTGGAGAGTCA+GGG | 0.631162 | 4_1:-70934674 | None:intergenic |
| TCCAAGAAAGTAGATTGGAA+TGG | 0.634807 | 4_1:-70933472 | None:intergenic |
| GAAGTGAAGACTGCGACCTG+AGG | 0.647793 | 4_1:-70932629 | None:intergenic |
| TGGAGATTGACATGAGATCG+GGG | 0.651246 | 4_1:+70934598 | Msa0569100:CDS |
| AGCTGAGAAAGATCCCAACA+AGG | 0.657205 | 4_1:-70933600 | None:intergenic |
| ACTTGTCTATGCTGATCACA+CGG | 0.658126 | 4_1:+70932606 | Msa0569100:CDS |
| GGCCACCAAGAAACTTATGT+GGG | 0.661192 | 4_1:-70934653 | None:intergenic |
| AATTAACTTCATGTTGACGA+CGG | 0.669839 | 4_1:+70932330 | None:intergenic |
| GCTGAGAAAGATCCCAACAA+GGG | 0.674394 | 4_1:-70933599 | None:intergenic |
| GGAGATTGACATGAGATCGG+GGG | 0.699559 | 4_1:+70934599 | Msa0569100:CDS |
| CCACCTCCACAAGTTGATGG+AGG | 0.701065 | 4_1:-70934732 | None:intergenic |
| TGGTAAAGAAGAAAGATGGG+TGG | 0.706827 | 4_1:+70933427 | Msa0569100:CDS |
| GACGATGCACTCATGCTATG+CGG | 0.716236 | 4_1:+70933314 | Msa0569100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCGTATAAAAAAATAAATT+AGG | + | chr4_1:70933764-70933783 | Msa0569100:intron | 10.0% |
| !! | TCGTATAAAAAAATAAATTA+GGG | + | chr4_1:70933765-70933784 | Msa0569100:intron | 10.0% |
| !! | ATCTATGTTAATAAATTATA+TGG | - | chr4_1:70933962-70933981 | None:intergenic | 10.0% |
| !!! | TTATTAATTTGTTTATTTAG+TGG | + | chr4_1:70934567-70934586 | Msa0569100:intron | 10.0% |
| !!! | ATATGTATCTCTTTTTATTA+CGG | + | chr4_1:70932966-70932985 | Msa0569100:intron | 15.0% |
| !!! | GGAAAATTTTCATTATTTTA+TGG | + | chr4_1:70933124-70933143 | Msa0569100:intron | 15.0% |
| !!! | AGATTTAAAATAATGGTAAA+AGG | + | chr4_1:70933792-70933811 | Msa0569100:intron | 15.0% |
| !! | ATTTGAAAATGAACTAAATT+TGG | + | chr4_1:70933932-70933951 | Msa0569100:intron | 15.0% |
| !! | TTTGAAAATGAACTAAATTT+GGG | + | chr4_1:70933933-70933952 | Msa0569100:intron | 15.0% |
| !! | TACATATAATATGATCAAAA+TGG | - | chr4_1:70934462-70934481 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTCAAGTTTATTT+TGG | + | chr4_1:70934506-70934525 | Msa0569100:intron | 15.0% |
| !!! | CATATTTGGTTTTTGTTTTT+TGG | + | chr4_1:70932699-70932718 | Msa0569100:intron | 20.0% |
| !! | TGTATCTCAAGTTATTAAAA+AGG | + | chr4_1:70933000-70933019 | Msa0569100:intron | 20.0% |
| !!! | TAAGCATTTTTTAATGTACT+TGG | - | chr4_1:70933282-70933301 | None:intergenic | 20.0% |
| !! | AAGTACATTAAAAAATGCTT+AGG | + | chr4_1:70933281-70933300 | Msa0569100:CDS | 20.0% |
| !! | AAGGTATGCATAATTATTTA+GGG | + | chr4_1:70933715-70933734 | Msa0569100:intron | 20.0% |
| !! | TTGAAAATGAACTAAATTTG+GGG | + | chr4_1:70933934-70933953 | Msa0569100:intron | 20.0% |
| !!! | TATATCATACTCTTTTTTTG+CGG | - | chr4_1:70934071-70934090 | None:intergenic | 20.0% |
| !!! | CTACAATATTTTTGTCATTT+AGG | + | chr4_1:70934211-70934230 | Msa0569100:intron | 20.0% |
| ! | ATGCATAACTCAGAAAATAT+TGG | - | chr4_1:70932382-70932401 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTACACACATATT+TGG | + | chr4_1:70932715-70932734 | Msa0569100:intron | 25.0% |
| !!! | ACACATATTTGGTTTGTTAT+AGG | + | chr4_1:70932726-70932745 | Msa0569100:intron | 25.0% |
| ! | GATACATATACGTAGTTAAA+AGG | - | chr4_1:70932955-70932974 | None:intergenic | 25.0% |
| !! | TCTTTTTATTACGGTAACTA+CGG | + | chr4_1:70932975-70932994 | Msa0569100:intron | 25.0% |
| ! | TATGAAACTATGCTATATGT+AGG | + | chr4_1:70933194-70933213 | Msa0569100:intron | 25.0% |
| ! | TACATTAAAAAATGCTTAGG+TGG | + | chr4_1:70933284-70933303 | Msa0569100:CDS | 25.0% |
| ! | TTCTTTCTCTCAAAATAGAA+GGG | - | chr4_1:70933394-70933413 | None:intergenic | 25.0% |
| ! | ATTCTTTCTCTCAAAATAGA+AGG | - | chr4_1:70933395-70933414 | None:intergenic | 25.0% |
| ! | CAAGGTATGCATAATTATTT+AGG | + | chr4_1:70933714-70933733 | Msa0569100:intron | 25.0% |
| !! | GGGACAAAGATTTAAAATAA+TGG | + | chr4_1:70933785-70933804 | Msa0569100:intron | 25.0% |
| !! | ATTTAATTTACACAAACGAC+AGG | - | chr4_1:70933854-70933873 | None:intergenic | 25.0% |
| ! | GTCGTTTGTGTAAATTAAAT+AGG | + | chr4_1:70933854-70933873 | Msa0569100:intron | 25.0% |
| ! | AAATTAAATAGGAGAGTGAT+TGG | + | chr4_1:70933865-70933884 | Msa0569100:intron | 25.0% |
| ! | TGAAAATGAACTAAATTTGG+GGG | + | chr4_1:70933935-70933954 | Msa0569100:intron | 25.0% |
| !!! | GCAAATTTTCTAAAATTACC+TGG | + | chr4_1:70933993-70934012 | Msa0569100:intron | 25.0% |
| !!! | ATATCATACTCTTTTTTTGC+GGG | - | chr4_1:70934070-70934089 | None:intergenic | 25.0% |
| !!! | TTTTTTGCACAAGAATATTC+TGG | + | chr4_1:70934138-70934157 | Msa0569100:intron | 25.0% |
| ! | TTGTAGAAAATTTAGACCTT+AGG | - | chr4_1:70934174-70934193 | None:intergenic | 25.0% |
| !! | TGTCATTTAGGTTATAGTTT+AGG | + | chr4_1:70934223-70934242 | Msa0569100:intron | 25.0% |
| ! | TTCATGAATTGATATGCTTT+AGG | - | chr4_1:70934304-70934323 | None:intergenic | 25.0% |
| ! | TAGGGACGAATATATATATA+CGG | - | chr4_1:70934386-70934405 | None:intergenic | 25.0% |
| ! | TTAGCAAGCTACTAAAATTA+GGG | - | chr4_1:70934404-70934423 | None:intergenic | 25.0% |
| ! | ATTAGCAAGCTACTAAAATT+AGG | - | chr4_1:70934405-70934424 | None:intergenic | 25.0% |
| GAGTGAATATTGCAAAAATC+AGG | - | chr4_1:70932451-70932470 | None:intergenic | 30.0% | |
| ! | AAGAAAAACTATGTTGGTTG+AGG | + | chr4_1:70932530-70932549 | Msa0569100:CDS | 30.0% |
| AATATGTCAATACCGTAGAA+AGG | - | chr4_1:70932685-70932704 | None:intergenic | 30.0% | |
| !! | TTCTACGGTATTGACATATT+TGG | + | chr4_1:70932685-70932704 | Msa0569100:intron | 30.0% |
| CAAATTGAATTAGTACCAAG+AGG | + | chr4_1:70933036-70933055 | Msa0569100:intron | 30.0% | |
| TAGCACTTATCACAAATTAC+AGG | + | chr4_1:70933102-70933121 | Msa0569100:intron | 30.0% | |
| AGCACTTATCACAAATTACA+GGG | + | chr4_1:70933103-70933122 | Msa0569100:intron | 30.0% | |
| TAATTCAGTACAGCTGTATA+TGG | + | chr4_1:70933164-70933183 | Msa0569100:intron | 30.0% | |
| ATTAAAAAATGCTTAGGTGG+TGG | + | chr4_1:70933287-70933306 | Msa0569100:CDS | 30.0% | |
| TTAAAAAATGCTTAGGTGGT+GGG | + | chr4_1:70933288-70933307 | Msa0569100:CDS | 30.0% | |
| !! | TTTTGAGAGAAAGAATGTTG+AGG | + | chr4_1:70933399-70933418 | Msa0569100:CDS | 30.0% |
| ! | TATTTAGGGTTGTCATTAAC+TGG | + | chr4_1:70933729-70933748 | Msa0569100:intron | 30.0% |
| ! | ATTTAGGGTTGTCATTAACT+GGG | + | chr4_1:70933730-70933749 | Msa0569100:intron | 30.0% |
| ! | TGAAGAGTTAATTTTCAACC+AGG | - | chr4_1:70934014-70934033 | None:intergenic | 30.0% |
| ! | TTCTGGATTTGAAATTCCTA+AGG | + | chr4_1:70934155-70934174 | Msa0569100:intron | 30.0% |
| ! | AATTGATATGCTTTAGGCAA+AGG | - | chr4_1:70934298-70934317 | None:intergenic | 30.0% |
| !! | TTATTGACCTTGTTTCTGCT+TGG | - | chr4_1:70932409-70932428 | None:intergenic | 35.0% |
| GCAAAAATCAGGAGATGTTT+CGG | - | chr4_1:70932440-70932459 | None:intergenic | 35.0% | |
| TATTCACTCAGATTCTTTCG+AGG | + | chr4_1:70932462-70932481 | Msa0569100:CDS | 35.0% | |
| !! | TCTTCCACTGATTCATTACA+TGG | - | chr4_1:70932514-70932533 | None:intergenic | 35.0% |
| CAGTGGAAGAAAAACTATGT+TGG | + | chr4_1:70932524-70932543 | Msa0569100:CDS | 35.0% | |
| ! | GTAGAATTCAACTCTCCTTT+TGG | + | chr4_1:70932574-70932593 | Msa0569100:CDS | 35.0% |
| ACAAGTTTCCTTGTACCAAA+AGG | - | chr4_1:70932592-70932611 | None:intergenic | 35.0% | |
| AAACATCTTCTGCCTTTCTA+CGG | + | chr4_1:70932670-70932689 | Msa0569100:CDS | 35.0% | |
| AACGTAACTCTCACAAGTAT+GGG | - | chr4_1:70933225-70933244 | None:intergenic | 35.0% | |
| TAAAAAATGCTTAGGTGGTG+GGG | + | chr4_1:70933289-70933308 | Msa0569100:CDS | 35.0% | |
| AAGAGGCTTCAAGAAGTAAT+GGG | + | chr4_1:70933359-70933378 | Msa0569100:CDS | 35.0% | |
| CCTTGGTAAAGAAGAAAGAT+GGG | + | chr4_1:70933424-70933443 | Msa0569100:CDS | 35.0% | |
| ACCATTCCAATCTACTTTCT+TGG | + | chr4_1:70933471-70933490 | Msa0569100:CDS | 35.0% | |
| TCCAAGAAAGTAGATTGGAA+TGG | - | chr4_1:70933475-70933494 | None:intergenic | 35.0% | |
| ATTCCAATCTACTTTCTTGG+AGG | + | chr4_1:70933474-70933493 | Msa0569100:CDS | 35.0% | |
| TCAGCTTGTAGTAATGTAAC+TGG | + | chr4_1:70933617-70933636 | Msa0569100:CDS | 35.0% | |
| AGGCTTATTCACCAATACAA+AGG | + | chr4_1:70933668-70933687 | Msa0569100:CDS | 35.0% | |
| AGCATGCAAAACCTTTGTAT+TGG | - | chr4_1:70933682-70933701 | None:intergenic | 35.0% | |
| ! | TTTAGGGTTGTCATTAACTG+GGG | + | chr4_1:70933731-70933750 | Msa0569100:intron | 35.0% |
| ACTCTTCAACCTATGTGAAT+AGG | + | chr4_1:70934026-70934045 | Msa0569100:intron | 35.0% | |
| AACCTATGTGAATAGGTATC+TGG | + | chr4_1:70934033-70934052 | Msa0569100:intron | 35.0% | |
| TTCCAGATACCTATTCACAT+AGG | - | chr4_1:70934038-70934057 | None:intergenic | 35.0% | |
| TTTATTTAGTGGTCCGTATG+TGG | + | chr4_1:70934578-70934597 | Msa0569100:intron | 35.0% | |
| TTGTTCATTAACAGTATCCC+TGG | - | chr4_1:70934687-70934706 | None:intergenic | 35.0% | |
| CGTCAATAGCTTCAATGAAA+AGG | + | chr4_1:70934767-70934786 | Msa0569100:CDS | 35.0% | |
| CTCAGATTCTTTCGAGGATT+TGG | + | chr4_1:70932468-70932487 | Msa0569100:CDS | 40.0% | |
| AGATTCTTTCGAGGATTTGG+TGG | + | chr4_1:70932471-70932490 | Msa0569100:CDS | 40.0% | |
| TGGTTGAGGTCACAAATCAT+TGG | + | chr4_1:70932544-70932563 | Msa0569100:CDS | 40.0% | |
| ! | TCAACTCTCCTTTTGGTACA+AGG | + | chr4_1:70932581-70932600 | Msa0569100:CDS | 40.0% |
| ACTTGTCTATGCTGATCACA+CGG | + | chr4_1:70932606-70932625 | Msa0569100:CDS | 40.0% | |
| GTAGAAAGGCAGAAGATGTT+TGG | - | chr4_1:70932671-70932690 | None:intergenic | 40.0% | |
| GAATTAGTACCAAGAGGATG+AGG | + | chr4_1:70933042-70933061 | Msa0569100:intron | 40.0% | |
| ! | TTCTGTTTTCCTCATCCTCT+TGG | - | chr4_1:70933054-70933073 | None:intergenic | 40.0% |
| CAACGTAACTCTCACAAGTA+TGG | - | chr4_1:70933226-70933245 | None:intergenic | 40.0% | |
| CATACTTGTGAGAGTTACGT+TGG | + | chr4_1:70933224-70933243 | Msa0569100:CDS | 40.0% | |
| TGGAAACAGGACGACAAAAA+TGG | + | chr4_1:70933244-70933263 | Msa0569100:CDS | 40.0% | |
| TACTTCTTGAAGCCTCTTGA+TGG | - | chr4_1:70933357-70933376 | None:intergenic | 40.0% | |
| CAAGAGGCTTCAAGAAGTAA+TGG | + | chr4_1:70933358-70933377 | Msa0569100:CDS | 40.0% | |
| GCCTTGGTAAAGAAGAAAGA+TGG | + | chr4_1:70933423-70933442 | Msa0569100:CDS | 40.0% | |
| CCCATCTTTCTTCTTTACCA+AGG | - | chr4_1:70933427-70933446 | None:intergenic | 40.0% | |
| TGGTAAAGAAGAAAGATGGG+TGG | + | chr4_1:70933427-70933446 | Msa0569100:CDS | 40.0% | |
| ! | GAAAGATGGGTGGTTTTTGT+TGG | + | chr4_1:70933437-70933456 | Msa0569100:CDS | 40.0% |
| AGATTGGAATGGTGCTCATA+GGG | - | chr4_1:70933464-70933483 | None:intergenic | 40.0% | |
| TAGATTGGAATGGTGCTCAT+AGG | - | chr4_1:70933465-70933484 | None:intergenic | 40.0% | |
| TTGCCTCCAAGAAAGTAGAT+TGG | - | chr4_1:70933480-70933499 | None:intergenic | 40.0% | |
| ACTTTCTTGGAGGCAAAGTT+TGG | + | chr4_1:70933484-70933503 | Msa0569100:CDS | 40.0% | |
| !! | AGATTGGCCTTGATGATCAA+GGG | + | chr4_1:70933519-70933538 | Msa0569100:CDS | 40.0% |
| !! | AGCTTTGAAGCTACAACTTG+AGG | + | chr4_1:70933556-70933575 | Msa0569100:CDS | 40.0% |
| !! | CATGCTTTGATTTTGCAGCA+AGG | + | chr4_1:70933696-70933715 | Msa0569100:CDS | 40.0% |
| TTAGGGTTGTCATTAACTGG+GGG | + | chr4_1:70933732-70933751 | Msa0569100:intron | 40.0% | |
| CATGCAGTCTCATATGATGA+CGG | + | chr4_1:70933825-70933844 | Msa0569100:intron | 40.0% | |
| ATGCAGTCTCATATGATGAC+GGG | + | chr4_1:70933826-70933845 | Msa0569100:intron | 40.0% | |
| TTTCCAGCAGTGTGAACAAT+TGG | + | chr4_1:70934431-70934450 | Msa0569100:intron | 40.0% | |
| TTCCAGCAGTGTGAACAATT+GGG | + | chr4_1:70934432-70934451 | Msa0569100:intron | 40.0% | |
| CTCATGTCAATCTCCACATA+CGG | - | chr4_1:70934594-70934613 | None:intergenic | 40.0% | |
| TGTGGAGATTGACATGAGAT+CGG | + | chr4_1:70934596-70934615 | Msa0569100:CDS | 40.0% | |
| ! | CTTATGTGGGCTGATGAAAA+CGG | - | chr4_1:70934643-70934662 | None:intergenic | 40.0% |
| ATCAGCCCACATAAGTTTCT+TGG | + | chr4_1:70934648-70934667 | Msa0569100:CDS | 40.0% | |
| ! | TTTTCACCTCCATCAACTTG+TGG | + | chr4_1:70934726-70934745 | Msa0569100:CDS | 40.0% |
| TGACGACGGTAGAACAAACT+TGG | + | chr4_1:70932344-70932363 | Msa0569100:CDS | 45.0% | |
| CATAGCTCCAAGCAGAAACA+AGG | + | chr4_1:70932399-70932418 | Msa0569100:CDS | 45.0% | |
| !! | TTCGAGGATTTGGTGGAGAT+AGG | + | chr4_1:70932478-70932497 | Msa0569100:CDS | 45.0% |
| !! | CCACTGATTCATTACATGGC+AGG | - | chr4_1:70932510-70932529 | None:intergenic | 45.0% |
| CCTGCCATGTAATGAATCAG+TGG | + | chr4_1:70932507-70932526 | Msa0569100:CDS | 45.0% | |
| GTGAGAGTTACGTTGGAAAC+AGG | + | chr4_1:70933231-70933250 | Msa0569100:CDS | 45.0% | |
| ! | GAAAGAATGTTGAGGTGCCT+TGG | + | chr4_1:70933407-70933426 | Msa0569100:CDS | 45.0% |
| TTGGCTGAGGTTGTAGAGAT+TGG | + | chr4_1:70933503-70933522 | Msa0569100:CDS | 45.0% | |
| !! | GAGATTGGCCTTGATGATCA+AGG | + | chr4_1:70933518-70933537 | Msa0569100:CDS | 45.0% |
| CAAGCAACCCTTGATCATCA+AGG | - | chr4_1:70933529-70933548 | None:intergenic | 45.0% | |
| TGATCAAGGGTTGCTTGACA+TGG | + | chr4_1:70933532-70933551 | Msa0569100:CDS | 45.0% | |
| GGGTCGATTGGTATCTTTAC+AGG | - | chr4_1:70933582-70933601 | None:intergenic | 45.0% | |
| AGATACCAATCGACCCTTGT+TGG | + | chr4_1:70933586-70933605 | Msa0569100:CDS | 45.0% | |
| GATACCAATCGACCCTTGTT+GGG | + | chr4_1:70933587-70933606 | Msa0569100:CDS | 45.0% | |
| GCTGAGAAAGATCCCAACAA+GGG | - | chr4_1:70933602-70933621 | None:intergenic | 45.0% | |
| AGCTGAGAAAGATCCCAACA+AGG | - | chr4_1:70933603-70933622 | None:intergenic | 45.0% | |
| CAGATACACGAGCAATTGCT+AGG | + | chr4_1:70933648-70933667 | Msa0569100:CDS | 45.0% | |
| CGTCATCATATGAGACTGCA+TGG | - | chr4_1:70933827-70933846 | None:intergenic | 45.0% | |
| ATAGGAGAGTGATTGGAGCA+TGG | + | chr4_1:70933872-70933891 | Msa0569100:intron | 45.0% | |
| GTGGAGATTGACATGAGATC+GGG | + | chr4_1:70934597-70934616 | Msa0569100:CDS | 45.0% | |
| TGGAGATTGACATGAGATCG+GGG | + | chr4_1:70934598-70934617 | Msa0569100:CDS | 45.0% | |
| ATGAGATCGGGGGAAATTGA+TGG | + | chr4_1:70934609-70934628 | Msa0569100:CDS | 45.0% | |
| AGCCCACATAAGTTTCTTGG+TGG | + | chr4_1:70934651-70934670 | Msa0569100:CDS | 45.0% | |
| GGCCACCAAGAAACTTATGT+GGG | - | chr4_1:70934656-70934675 | None:intergenic | 45.0% | |
| GACGATGCACTCATGCTATG+CGG | + | chr4_1:70933314-70933333 | Msa0569100:CDS | 50.0% | |
| TTGGAGGCAAAGTTTGGCTG+AGG | + | chr4_1:70933490-70933509 | Msa0569100:CDS | 50.0% | |
| AGATCCCAACAAGGGTCGAT+TGG | - | chr4_1:70933594-70933613 | None:intergenic | 50.0% | |
| GAGAGTGATTGGAGCATGGA+GGG | + | chr4_1:70933876-70933895 | Msa0569100:intron | 50.0% | |
| ATTGGAGCATGGAGGGAGAT+GGG | + | chr4_1:70933883-70933902 | Msa0569100:intron | 50.0% | |
| ! | ATGGAGGGAGATGGGTTTGA+TGG | + | chr4_1:70933891-70933910 | Msa0569100:intron | 50.0% |
| GACCCAATTGTTCACACTGC+TGG | - | chr4_1:70934437-70934456 | None:intergenic | 50.0% | |
| GGAGATTGACATGAGATCGG+GGG | + | chr4_1:70934599-70934618 | Msa0569100:CDS | 50.0% | |
| GGGCCACCAAGAAACTTATG+TGG | - | chr4_1:70934657-70934676 | None:intergenic | 50.0% | |
| ACAGTATCCCTGGAGAGTCA+GGG | - | chr4_1:70934677-70934696 | None:intergenic | 50.0% | |
| AACAGTATCCCTGGAGAGTC+AGG | - | chr4_1:70934678-70934697 | None:intergenic | 50.0% | |
| TCACCTCCATCAACTTGTGG+AGG | + | chr4_1:70934729-70934748 | Msa0569100:CDS | 50.0% | |
| ! | GTACCACCTCCACAAGTTGA+TGG | - | chr4_1:70934738-70934757 | None:intergenic | 50.0% |
| TATGCTGATCACACGGCCTC+AGG | + | chr4_1:70932613-70932632 | Msa0569100:CDS | 55.0% | |
| GAAGTGAAGACTGCGACCTG+AGG | - | chr4_1:70932632-70932651 | None:intergenic | 55.0% | |
| TGCACTCATGCTATGCGGCT+CGG | + | chr4_1:70933319-70933338 | Msa0569100:CDS | 55.0% | |
| GGAGAGTGATTGGAGCATGG+AGG | + | chr4_1:70933875-70933894 | Msa0569100:intron | 55.0% | |
| GATTGGAGCATGGAGGGAGA+TGG | + | chr4_1:70933882-70933901 | Msa0569100:intron | 55.0% | |
| !! | CCACCTCCACAAGTTGATGG+AGG | - | chr4_1:70934735-70934754 | None:intergenic | 55.0% |
| CCTCCATCAACTTGTGGAGG+TGG | + | chr4_1:70934732-70934751 | Msa0569100:CDS | 55.0% | |
| GCACTCATGCTATGCGGCTC+GGG | + | chr4_1:70933320-70933339 | Msa0569100:CDS | 60.0% | |
| GCACAACGGCAGCCATCAAG+AGG | + | chr4_1:70933342-70933361 | Msa0569100:CDS | 60.0% | |
| ! | TTGGTGGCCCTGACTCTCCA+GGG | + | chr4_1:70934667-70934686 | Msa0569100:CDS | 60.0% |
| ! | GCTATGCGGCTCGGGCACAA+CGG | + | chr4_1:70933328-70933347 | Msa0569100:CDS | 65.0% |
| ! | CTTGGTGGCCCTGACTCTCC+AGG | + | chr4_1:70934666-70934685 | Msa0569100:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 70932340 | 70934809 | 70932340 | ID=Msa0569100;Name=Msa0569100 |
| chr4_1 | mRNA | 70932340 | 70934809 | 70932340 | ID=Msa0569100-mRNA-1;Parent=Msa0569100;Name=Msa0569100-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0|1|1|1|3|0|358 |
| chr4_1 | exon | 70932340 | 70932691 | 70932340 | ID=Msa0569100-mRNA-1:exon:23907;Parent=Msa0569100-mRNA-1 |
| chr4_1 | exon | 70933216 | 70933717 | 70933216 | ID=Msa0569100-mRNA-1:exon:23908;Parent=Msa0569100-mRNA-1 |
| chr4_1 | exon | 70934587 | 70934809 | 70934587 | ID=Msa0569100-mRNA-1:exon:23909;Parent=Msa0569100-mRNA-1 |
| chr4_1 | CDS | 70932340 | 70932691 | 70932340 | ID=Msa0569100-mRNA-1:cds;Parent=Msa0569100-mRNA-1 |
| chr4_1 | CDS | 70933216 | 70933717 | 70933216 | ID=Msa0569100-mRNA-1:cds;Parent=Msa0569100-mRNA-1 |
| chr4_1 | CDS | 70934587 | 70934809 | 70934587 | ID=Msa0569100-mRNA-1:cds;Parent=Msa0569100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
