AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165820 MtrunA17_Chr7g0271151 99.762 420 1 0 1 420 1 420 0.0 858
Msa1165820 MtrunA17_Chr3g0126081 35.955 267 148 4 20 265 53 317 9.72e-42 154
Msa1165820 MtrunA17_Chr2g0300991 34.409 279 162 4 20 279 31 307 3.46e-40 148
Msa1165820 MtrunA17_Chr3g0146011 34.201 269 151 5 35 277 38 306 2.63e-36 139
Msa1165820 MtrunA17_Chr2g0281261 29.670 273 168 5 15 271 18 282 4.08e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165820 AT3G05940.1 77.566 419 93 1 1 418 1 419 0.0 671
Msa1165820 AT5G26740.2 75.592 422 101 2 1 420 1 422 0.0 637
Msa1165820 AT5G26740.3 75.592 422 101 2 1 420 1 422 0.0 637
Msa1165820 AT5G26740.1 75.592 422 101 2 1 420 1 422 0.0 637
Msa1165820 AT1G77220.1 36.431 269 152 3 20 269 53 321 9.27e-43 157
Msa1165820 AT4G38360.2 34.520 281 161 5 20 277 31 311 1.41e-41 153
Msa1165820 AT1G23070.1 35.018 277 150 5 15 269 23 291 2.74e-37 140
Msa1165820 AT1G77220.2 33.333 273 163 3 17 270 50 322 5.77e-37 138
Msa1165820 AT4G38360.1 32.812 256 151 3 18 252 29 284 4.41e-34 129
Msa1165820 AT4G21570.1 31.228 285 162 9 12 273 12 285 2.78e-29 116
Msa1165820 AT1G11200.1 29.749 279 174 5 15 278 19 290 8.88e-29 114
Msa1165820 AT4G21570.2 29.114 316 158 11 12 273 12 315 1.70e-23 100

Find 144 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTGTAACAACAACTAAAA+TGG 0.171683 7_4:-57837681 None:intergenic
TCTGCTGCAGGAACTTCTTC+TGG 0.174386 7_4:-57839820 None:intergenic
GATCTCAATCCTCACCAATT+AGG 0.203117 7_4:+57835663 Msa1165820:five_prime_UTR
ACCAATTAGGGTTGAGATAA+TGG 0.231192 7_4:+57835676 Msa1165820:exon
CCCATTATCTCAACCCTAAT+TGG 0.247149 7_4:-57835677 None:intergenic
TTTCTCACATTATCCATCTC+TGG 0.262507 7_4:-57839595 None:intergenic
TTGCTTTCCTCCTATACCTT+TGG 0.282986 7_4:+57837378 Msa1165820:CDS
GATCTTCTCGGATCTGATTC+TGG 0.285469 7_4:+57835618 Msa1165820:five_prime_UTR
CTGTTGTATTCCTTACTTAC+TGG 0.302664 7_4:+57837888 Msa1165820:CDS
AGCGTGGTTTCTTACATTCC+TGG 0.311164 7_4:+57839969 Msa1165820:three_prime_UTR
AGTAGTACTCCCTCAAATTC+TGG 0.343585 7_4:+57839679 Msa1165820:CDS
CCAATTAGGGTTGAGATAAT+GGG 0.345820 7_4:+57835677 Msa1165820:exon
ATCTCAATCCTCACCAATTA+GGG 0.346136 7_4:+57835664 Msa1165820:five_prime_UTR
CTAGCATGGGTTGGTGGTCC+TGG 0.350385 7_4:+57837295 Msa1165820:CDS
GCTCCAGCATATTCTTTGTA+TGG 0.352134 7_4:-57839264 None:intergenic
TCCTGTCACTTTGTCTAGCA+TGG 0.352706 7_4:+57837281 Msa1165820:CDS
AATCTGCTTAAATCCTTTCC+AGG 0.358482 7_4:-57839987 None:intergenic
CACCGTCGGTGCAATCGCTT+TGG 0.369605 7_4:+57835742 Msa1165820:CDS
ACAATAATGGCGACTGTTGT+TGG 0.369789 7_4:-57835556 None:intergenic
CACACACAGACACACACGTT+TGG 0.371768 7_4:+57835402 Msa1165820:five_prime_UTR
TTCTTTCTTGCTGCAAAGTC+GGG 0.373340 7_4:+57839147 Msa1165820:CDS
ATATGGTATGGACGCAGAAT+TGG 0.374420 7_4:-57839761 None:intergenic
AGGAACTTCTTCTGGGTAAC+TGG 0.377025 7_4:-57839812 None:intergenic
ACTTTATGATAATAAACTTT+GGG 0.378211 7_4:-57837865 None:intergenic
TCCATGCATTATGTAGAGTT+GGG 0.380167 7_4:+57840252 Msa1165820:three_prime_UTR
TGGGAATGGAGGCTGACAAC+GGG 0.387352 7_4:-57840051 None:intergenic
CAGCAGATAAAGCCGGTCTT+AGG 0.392911 7_4:+57839836 Msa1165820:CDS
CGTGGTTTGACCGCTAGCCT+TGG 0.393123 7_4:+57839303 Msa1165820:CDS
TTCTCACATTATCCATCTCT+GGG 0.397889 7_4:-57839594 None:intergenic
TACAGATAACTTACACTTCA+CGG 0.401405 7_4:-57836428 None:intergenic
GACTTTATGATAATAAACTT+TGG 0.402571 7_4:-57837866 None:intergenic
TTGTTATAAGTTTGAGTGGT+CGG 0.403312 7_4:+57837323 Msa1165820:CDS
TATCTACAATTGCACATAAG+TGG 0.407887 7_4:-57840145 None:intergenic
GAAGAAGAAAGAAACAATAA+TGG 0.411106 7_4:-57835569 None:intergenic
CTCGGATCTGATTCTGGCTA+GGG 0.413980 7_4:+57835624 Msa1165820:five_prime_UTR
ACACACAGACACACACGTTT+GGG 0.417249 7_4:+57835403 Msa1165820:five_prime_UTR
TTCCATGCATTATGTAGAGT+TGG 0.420040 7_4:+57840251 Msa1165820:three_prime_UTR
GCATCAGAGTTTGAAGCATC+AGG 0.427306 7_4:-57839709 None:intergenic
CTGTTTCAGCTATGAAGCTT+GGG 0.427514 7_4:+57837246 Msa1165820:intron
ACGGTCCATGTTATTTGTCT+TGG 0.431237 7_4:+57840084 Msa1165820:three_prime_UTR
GTTCTTTCTTGCTGCAAAGT+CGG 0.434663 7_4:+57839146 Msa1165820:CDS
ACTTACCCATCCAAAGGTAT+AGG 0.437456 7_4:-57837388 None:intergenic
AAATTACCTGCCAGTAAGTA+AGG 0.437928 7_4:-57837898 None:intergenic
ATGGCGACTGTTGTTGGCTT+CGG 0.438083 7_4:-57835550 None:intergenic
CCTGTCACTTTGTCTAGCAT+GGG 0.441185 7_4:+57837282 Msa1165820:CDS
GTGGTTTGACCGCTAGCCTT+GGG 0.442097 7_4:+57839304 Msa1165820:CDS
CATTCAGAGCTAGGTTGGTT+GGG 0.442787 7_4:+57839873 Msa1165820:three_prime_UTR
AGTGTAACAACAACTAAAAT+GGG 0.443292 7_4:-57837680 None:intergenic
CTGCTGCAGGAACTTCTTCT+GGG 0.444198 7_4:-57839819 None:intergenic
ATGTAGAGTTGGGTTCATAT+TGG 0.444490 7_4:+57840262 Msa1165820:three_prime_UTR
TCTATCATATTCGATCTTCT+CGG 0.448267 7_4:+57835606 Msa1165820:five_prime_UTR
TCAATAAGTGTCAAATCATA+TGG 0.449032 7_4:-57839778 None:intergenic
AGATACAAGTATGACTGCTT+TGG 0.453832 7_4:-57837746 None:intergenic
GAATATGCTGGAGCTAATAT+AGG 0.458813 7_4:+57839273 Msa1165820:CDS
TTTCCTCCTATACCTTTGGA+TGG 0.458821 7_4:+57837382 Msa1165820:CDS
ACTGTTTCAGCTATGAAGCT+TGG 0.464786 7_4:+57837245 Msa1165820:intron
TTCTTTACAACCACAGTGAA+GGG 0.466359 7_4:+57839524 Msa1165820:CDS
TGTTATAAGTTTGAGTGGTC+GGG 0.467257 7_4:+57837324 Msa1165820:CDS
TCTGAAAACCGAAAAGTAGA+AGG 0.467346 7_4:+57835445 Msa1165820:five_prime_UTR
TCTCGGATCTGATTCTGGCT+AGG 0.468110 7_4:+57835623 Msa1165820:five_prime_UTR
CATATTGTAATTGTCTCCGT+TGG 0.470280 7_4:+57840111 Msa1165820:three_prime_UTR
CTTTGTCTAGCATGGGTTGG+TGG 0.473508 7_4:+57837289 Msa1165820:CDS
ACACTTATTCTTTACGCTAA+GGG 0.475471 7_4:+57837698 Msa1165820:CDS
AACTTTGGGACTGGATTGAA+TGG 0.476786 7_4:-57837851 None:intergenic
TGATTTGACACTTATTGACT+TGG 0.478189 7_4:+57839783 Msa1165820:CDS
TACACTTATTCTTTACGCTA+AGG 0.478364 7_4:+57837697 Msa1165820:CDS
ACATTCAGAGCTAGGTTGGT+TGG 0.481284 7_4:+57839872 Msa1165820:three_prime_UTR
ATGATAATAAACTTTGGGAC+TGG 0.490038 7_4:-57837860 None:intergenic
CAGTCAAATTTCTTGAGTAT+CGG 0.493051 7_4:-57840206 None:intergenic
AAGTGTCAAATCATATGGTA+TGG 0.493986 7_4:-57839773 None:intergenic
TTATCCATCTCTGGGCCAAT+CGG 0.496708 7_4:-57839586 None:intergenic
AAGCAGCTTCGTCAGCATCC+TGG 0.498366 7_4:-57839176 None:intergenic
TAGGTTCAGTATAATTAAGA+AGG 0.501333 7_4:-57835787 None:intergenic
TTCCTCCTATACCTTTGGAT+GGG 0.504704 7_4:+57837383 Msa1165820:CDS
AAACTTATAACAACTGATCC+AGG 0.504735 7_4:-57837313 None:intergenic
TCACGAACGTTTGTTCCGAT+TGG 0.505852 7_4:+57839571 Msa1165820:CDS
TGTATTCCTTACTTACTGGC+AGG 0.506772 7_4:+57837892 Msa1165820:CDS
AGGCAGTGAACCAGAATTTG+AGG 0.509018 7_4:-57839689 None:intergenic
TCACTTTGTCTAGCATGGGT+TGG 0.514179 7_4:+57837286 Msa1165820:CDS
TGCAAAGTCGGGATTCATCC+AGG 0.517372 7_4:+57839158 Msa1165820:CDS
CACTTATTCTTTACGCTAAG+GGG 0.518846 7_4:+57837699 Msa1165820:CDS
AACCACAGTGAAGGGGAAGA+AGG 0.518899 7_4:+57839532 Msa1165820:CDS
ACAATGAAGCGTTGATAAGT+AGG 0.519462 7_4:-57835806 None:intergenic
TTGAAAGCCGCGGTAAAACA+AGG 0.520223 7_4:-57836389 None:intergenic
TTTCCATACAAAGAATATGC+TGG 0.525305 7_4:+57839261 Msa1165820:CDS
GATAAGGAACATTCAGAGCT+AGG 0.526347 7_4:+57839864 Msa1165820:three_prime_UTR
AGACCGGCTTTATCTGCTGC+AGG 0.526348 7_4:-57839832 None:intergenic
TTCATACGTAAGTGCAAGCA+AGG 0.532037 7_4:+57837632 Msa1165820:CDS
TTACGCTAAGGGGAAATACA+AGG 0.532724 7_4:+57837709 Msa1165820:CDS
CGTGTGTGTCTGTGTGTGTG+TGG 0.533924 7_4:-57835397 None:intergenic
AAGAAGGAACAAGGAAGTAC+AGG 0.535851 7_4:+57839548 Msa1165820:CDS
GGTTTCTTACATTCCTGGAA+AGG 0.536167 7_4:+57839974 Msa1165820:three_prime_UTR
AAGGCTAGCGGTCAAACCAC+GGG 0.540121 7_4:-57839301 None:intergenic
AGCCAAAGCGATTGCACCGA+CGG 0.545111 7_4:-57835744 None:intergenic
CCTTATCGATCACCTAAGAC+CGG 0.547244 7_4:-57839848 None:intergenic
TGTATGGAAATGCATAAAAG+TGG 0.547274 7_4:-57839248 None:intergenic
TGTTGTTGGCTTCGGTAACA+AGG 0.548815 7_4:-57835542 None:intergenic
GGCAGTGAACCAGAATTTGA+GGG 0.549362 7_4:-57839688 None:intergenic
AGGAACATTCAGAGCTAGGT+TGG 0.553513 7_4:+57839868 Msa1165820:three_prime_UTR
TCACCTGGTGGACTGTATCA+TGG 0.557444 7_4:-57839353 None:intergenic
ACGTTTGGGTTCTCGCGTTG+TGG 0.561799 7_4:+57835417 Msa1165820:five_prime_UTR
AATCAAATCTTCCTTGCTTG+TGG 0.562585 7_4:+57839732 Msa1165820:CDS
GTTCTTTACAACCACAGTGA+AGG 0.564984 7_4:+57839523 Msa1165820:CDS
CAAGGCTAGCGGTCAAACCA+CGG 0.567441 7_4:-57839302 None:intergenic
TACCCATCCAAAGGTATAGG+AGG 0.567651 7_4:-57837385 None:intergenic
TGTTCCGATTGGCCCAGAGA+TGG 0.569333 7_4:+57839582 Msa1165820:CDS
CTAAGGGGAAATACAAGGAT+GGG 0.571154 7_4:+57837714 Msa1165820:CDS
TCAGTTGTTATAAGTTTGAG+TGG 0.572193 7_4:+57837319 Msa1165820:CDS
TGAGATGCTTATTGCTGCAG+TGG 0.573649 7_4:+57839224 Msa1165820:CDS
CCATTCCCAAGCAAACAAAA+CGG 0.578374 7_4:+57840065 Msa1165820:three_prime_UTR
TTTGGGTTCTCGCGTTGTGG+TGG 0.578721 7_4:+57835420 Msa1165820:five_prime_UTR
ACCCAACTCTACATAATGCA+TGG 0.581229 7_4:-57840253 None:intergenic
GTTCCTGCAGCAGATAAAGC+CGG 0.587118 7_4:+57839829 Msa1165820:CDS
GCTAAGGGGAAATACAAGGA+TGG 0.587400 7_4:+57837713 Msa1165820:CDS
ACAATTGCACATAAGTGGAT+AGG 0.588419 7_4:-57840140 None:intergenic
TTGGGAATGGAGGCTGACAA+CGG 0.589061 7_4:-57840052 None:intergenic
CCCATGCTAGACAAAGTGAC+AGG 0.598216 7_4:-57837282 None:intergenic
CAATTAGGGTTGAGATAATG+GGG 0.600956 7_4:+57835678 Msa1165820:exon
TATCTCAACCCTAATTGGTG+AGG 0.604064 7_4:-57835672 None:intergenic
ACGACTATTAATGATTCTGA+TGG 0.605121 7_4:+57835355 Msa1165820:five_prime_UTR
GAGATGCTTATTGCTGCAGT+GGG 0.611426 7_4:+57839225 Msa1165820:CDS
CTATACATTCTCATATACAA+TGG 0.615648 7_4:+57837778 Msa1165820:CDS
GTGAAGGGGAAGAAGGAACA+AGG 0.618383 7_4:+57839539 Msa1165820:CDS
TATGCTGGAGCTAATATAGG+TGG 0.621058 7_4:+57839276 Msa1165820:CDS
ATTGGACACATCCACAAGCA+AGG 0.624740 7_4:-57839743 None:intergenic
AGAACATAATCATGATACGT+TGG 0.630961 7_4:-57839505 None:intergenic
CAAAGCATGCCCAAGGCTAG+CGG 0.631165 7_4:-57839313 None:intergenic
GTGTGTGTCTGTGTGTGTGT+GGG 0.632118 7_4:-57835396 None:intergenic
TTCCTTCTTCCCCTTCACTG+TGG 0.632503 7_4:-57839534 None:intergenic
TTACCATGATACAGTCCACC+AGG 0.635265 7_4:+57839350 Msa1165820:CDS
ATGCAAACTTACCCATCCAA+AGG 0.637240 7_4:-57837394 None:intergenic
TCTTTACAACCACAGTGAAG+GGG 0.644033 7_4:+57839525 Msa1165820:CDS
TAAGCATATAACTGGAAACA+AGG 0.644662 7_4:+57839621 Msa1165820:CDS
TCAACTTCAAAGCATGCCCA+AGG 0.650573 7_4:-57839320 None:intergenic
GGGAATGGAGGCTGACAACG+GGG 0.657460 7_4:-57840050 None:intergenic
GAAGACCAAGACAAATAACA+TGG 0.664001 7_4:-57840089 None:intergenic
TGAAAGCCGCGGTAAAACAA+GGG 0.670598 7_4:-57836388 None:intergenic
AGTGGATAGGACACAACCAA+CGG 0.679096 7_4:-57840127 None:intergenic
CAAGTCATCAGACAGACTGA+CGG 0.684226 7_4:-57837355 None:intergenic
TTAAAGTAGATTGAAAGCCG+CGG 0.686396 7_4:-57836399 None:intergenic
TCATACGTAAGTGCAAGCAA+GGG 0.690075 7_4:+57837633 Msa1165820:CDS
GCTAATATAGGTGGATCCCG+TGG 0.715148 7_4:+57839285 Msa1165820:CDS
AGAGAACTATGATTCAAGCG+TGG 0.719846 7_4:+57839953 Msa1165820:three_prime_UTR
AATTAGGGTTGAGATAATGG+GGG 0.759621 7_4:+57835679 Msa1165820:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATAATTTCAAATTC+AGG - chr7_4:57837171-57837190 None:intergenic 10.0%
!!! TTTTTAAAAAAAACTTTAAG+AGG + chr7_4:57837533-57837552 Msa1165820:intron 10.0%
!! AGTAAGTAAAAAAAAAAAAA+AGG - chr7_4:57838615-57838634 None:intergenic 10.0%
!!! AAAGTAGTAATTTTCAATTT+TGG + chr7_4:57835497-57835516 Msa1165820:five_prime_UTR 15.0%
!!! AAGTAGTAATTTTCAATTTT+GGG + chr7_4:57835498-57835517 Msa1165820:five_prime_UTR 15.0%
!! TATATCTAAAAAATTGTCAT+TGG + chr7_4:57836791-57836810 Msa1165820:intron 15.0%
!! ATATCTAAAAAATTGTCATT+GGG + chr7_4:57836792-57836811 Msa1165820:intron 15.0%
!!! ATGTTTATTTTTCTAATGAT+AGG + chr7_4:57836817-57836836 Msa1165820:intron 15.0%
!! ATGTTAAAATAGTAAATGAA+GGG - chr7_4:57836913-57836932 None:intergenic 15.0%
!! AATGTTAAAATAGTAAATGA+AGG - chr7_4:57836914-57836933 None:intergenic 15.0%
!! ACTTTATGATAATAAACTTT+GGG - chr7_4:57837868-57837887 None:intergenic 15.0%
!!! TTATACATCTTTCATTTTTA+TGG + chr7_4:57837921-57837940 Msa1165820:intron 15.0%
!!! TCAAATTAATTTTTTGAAGA+TGG + chr7_4:57839020-57839039 Msa1165820:intron 15.0%
!!! TTTTTTGTTTTTCATTTCTT+AGG + chr7_4:57839116-57839135 Msa1165820:intron 15.0%
!!! TTTTTGTTTTTCATTTCTTA+GGG + chr7_4:57839117-57839136 Msa1165820:intron 15.0%
!! ATATAGAAAGTTGTAAATTG+TGG + chr7_4:57836126-57836145 Msa1165820:intron 20.0%
!! TATCTAAAAAATTGTCATTG+GGG + chr7_4:57836793-57836812 Msa1165820:intron 20.0%
!! TGTTAAAATAGTAAATGAAG+GGG - chr7_4:57836912-57836931 None:intergenic 20.0%
!! GACTTTATGATAATAAACTT+TGG - chr7_4:57837869-57837888 None:intergenic 20.0%
!!! TGTTTTATGTTACCATAAAA+AGG + chr7_4:57838035-57838054 Msa1165820:intron 20.0%
!! TGAGAATAACATTATAAGAT+GGG - chr7_4:57838353-57838372 None:intergenic 20.0%
!! TTGAGAATAACATTATAAGA+TGG - chr7_4:57838354-57838373 None:intergenic 20.0%
!!! AAATTCTAAGCTTGTTTATA+TGG + chr7_4:57838900-57838919 Msa1165820:intron 20.0%
!! TATGGTCATAGTAATAAAAA+AGG + chr7_4:57838918-57838937 Msa1165820:intron 20.0%
!! ATTATTTATTTGCATGCAAA+AGG + chr7_4:57838973-57838992 Msa1165820:intron 20.0%
!!! TTTTGTTTTTCATTTCTTAG+GGG + chr7_4:57839118-57839137 Msa1165820:intron 20.0%
!! AGAAAAAATAAGCATATAAC+TGG + chr7_4:57839613-57839632 Msa1165820:CDS 20.0%
!! TAGTAAAATAAAAACGTCAA+TGG - chr7_4:57840302-57840321 None:intergenic 20.0%
! GAAGAAGAAAGAAACAATAA+TGG - chr7_4:57835572-57835591 None:intergenic 25.0%
! TAGGTTCAGTATAATTAAGA+AGG - chr7_4:57835790-57835809 None:intergenic 25.0%
! TACATAAACAAAGAAAAACG+TGG - chr7_4:57835894-57835913 None:intergenic 25.0%
!! TCATTGGTGTATTTGTTAAT+TGG + chr7_4:57835935-57835954 Msa1165820:intron 25.0%
!!! TACATTCATTGTTTTTCACT+TGG + chr7_4:57836034-57836053 Msa1165820:intron 25.0%
! AACCAAATAGGTAAAACAAT+GGG - chr7_4:57836181-57836200 None:intergenic 25.0%
! GAAAATGAAGAAGAAATCAA+AGG - chr7_4:57836229-57836248 None:intergenic 25.0%
!!! AAACTTTAATTTTCTCTGAC+AGG + chr7_4:57836341-57836360 Msa1165820:intron 25.0%
!! ACAACATCATGATTGATTTA+AGG + chr7_4:57836625-57836644 Msa1165820:intron 25.0%
! TTAAAATAGTAAATGAAGGG+GGG - chr7_4:57836910-57836929 None:intergenic 25.0%
! GTTAAAATAGTAAATGAAGG+GGG - chr7_4:57836911-57836930 None:intergenic 25.0%
!! TTTGTATTTTCTTTTGCTAG+AGG + chr7_4:57836944-57836963 Msa1165820:intron 25.0%
!! TTGCATCTGATTCATATTTT+TGG + chr7_4:57837411-57837430 Msa1165820:intron 25.0%
!! AGGTATATATAACCATTTTC+AGG - chr7_4:57837453-57837472 None:intergenic 25.0%
! CATCTATGAAACAAATTCAA+AGG - chr7_4:57837487-57837506 None:intergenic 25.0%
!! AAAAAAAACTTTAAGAGGCT+AGG + chr7_4:57837538-57837557 Msa1165820:intron 25.0%
! AGTGTAACAACAACTAAAAT+GGG - chr7_4:57837683-57837702 None:intergenic 25.0%
! AAGTGTAACAACAACTAAAA+TGG - chr7_4:57837684-57837703 None:intergenic 25.0%
! CTATACATTCTCATATACAA+TGG + chr7_4:57837778-57837797 Msa1165820:CDS 25.0%
!! CTATGCTTTTCTCATATTTT+CGG + chr7_4:57837945-57837964 Msa1165820:intron 25.0%
!! ACATTATAAGATGGGATTTT+TGG - chr7_4:57838345-57838364 None:intergenic 25.0%
!!! ACTGTTTTTTCTTATACACA+AGG + chr7_4:57838632-57838651 Msa1165820:intron 25.0%
!!! CTGTTTTTTCTTATACACAA+GGG + chr7_4:57838633-57838652 Msa1165820:intron 25.0%
! AATCAATTATGGAGTAAAGA+TGG - chr7_4:57838747-57838766 None:intergenic 25.0%
! TCTTTACTCCATAATTGATT+TGG + chr7_4:57838747-57838766 Msa1165820:intron 25.0%
! AAACCTTGAGAAATAGAAAA+CGG - chr7_4:57838863-57838882 None:intergenic 25.0%
! TTTGTTAATTGCTTTGTAGT+GGG + chr7_4:57838996-57839015 Msa1165820:intron 25.0%
! TAACCAATAAGCTAACATAT+AGG - chr7_4:57839052-57839071 None:intergenic 25.0%
!!! TTTGTTTTTCATTTCTTAGG+GGG + chr7_4:57839119-57839138 Msa1165820:intron 25.0%
! ACACAAGGAACTATAAAATA+TGG - chr7_4:57839409-57839428 None:intergenic 25.0%
! AGTAGTATCAGGTTATTAAT+TGG - chr7_4:57839465-57839484 None:intergenic 25.0%
! TCAATAAGTGTCAAATCATA+TGG - chr7_4:57839781-57839800 None:intergenic 25.0%
!!! TAAATGTTTTTGCTATAGAG+AGG + chr7_4:57839896-57839915 Msa1165820:three_prime_UTR 25.0%
ACGACTATTAATGATTCTGA+TGG + chr7_4:57835355-57835374 Msa1165820:five_prime_UTR 30.0%
TCTATCATATTCGATCTTCT+CGG + chr7_4:57835606-57835625 Msa1165820:five_prime_UTR 30.0%
GCGATAACATAGAAAAAAAG+CGG - chr7_4:57835713-57835732 None:intergenic 30.0%
AAGAAGAGAAATTAACTGAC+CGG - chr7_4:57835851-57835870 None:intergenic 30.0%
TATGTATTGTATTCCCTACT+AGG + chr7_4:57835908-57835927 Msa1165820:intron 30.0%
TTTCAACAGTGACACATTTA+GGG - chr7_4:57836006-57836025 None:intergenic 30.0%
ATTTCAACAGTGACACATTT+AGG - chr7_4:57836007-57836026 None:intergenic 30.0%
!! TTGTTTTTCACTTGGTTGAA+AGG + chr7_4:57836042-57836061 Msa1165820:intron 30.0%
! TGTTTTTCACTTGGTTGAAA+GGG + chr7_4:57836043-57836062 Msa1165820:intron 30.0%
!! TACCCATTGTTTTACCTATT+TGG + chr7_4:57836176-57836195 Msa1165820:intron 30.0%
GAACCAAATAGGTAAAACAA+TGG - chr7_4:57836182-57836201 None:intergenic 30.0%
AAGTGCTCTTGAAAATCTAA+TGG + chr7_4:57836251-57836270 Msa1165820:intron 30.0%
AGTGCTCTTGAAAATCTAAT+GGG + chr7_4:57836252-57836271 Msa1165820:intron 30.0%
TACAGATAACTTACACTTCA+CGG - chr7_4:57836431-57836450 None:intergenic 30.0%
CTAAATAACAGCAACAACAA+AGG - chr7_4:57836477-57836496 None:intergenic 30.0%
CAGGGAGGAAAAAAAATATA+CGG - chr7_4:57836514-57836533 None:intergenic 30.0%
!! AACTTGTTGGTTGTGATTAA+GGG + chr7_4:57836545-57836564 Msa1165820:intron 30.0%
AGCTATGTATGATATATCAC+TGG - chr7_4:57836585-57836604 None:intergenic 30.0%
! CATGATTGATTTAAGGTTCT+AGG + chr7_4:57836632-57836651 Msa1165820:intron 30.0%
CTTCATCGTATACATATCAA+GGG - chr7_4:57836679-57836698 None:intergenic 30.0%
ACTTCATCGTATACATATCA+AGG - chr7_4:57836680-57836699 None:intergenic 30.0%
ATACGATGAAGTCTCTATTA+TGG + chr7_4:57836688-57836707 Msa1165820:intron 30.0%
AGAATAACCAATGAACTAGA+AGG - chr7_4:57836765-57836784 None:intergenic 30.0%
! CTAGTTCATTGGTTATTCTT+TGG + chr7_4:57836766-57836785 Msa1165820:intron 30.0%
AGATCTAGAGATTAATGAGT+TGG + chr7_4:57837002-57837021 Msa1165820:intron 30.0%
GTTGGATCAAAATATGACTA+TGG + chr7_4:57837020-57837039 Msa1165820:intron 30.0%
AAACAGTTGAGAAGAGAAAA+TGG - chr7_4:57837232-57837251 None:intergenic 30.0%
AAACTTATAACAACTGATCC+AGG - chr7_4:57837316-57837335 None:intergenic 30.0%
TCAGTTGTTATAAGTTTGAG+TGG + chr7_4:57837319-57837338 Msa1165820:CDS 30.0%
TTGTTATAAGTTTGAGTGGT+CGG + chr7_4:57837323-57837342 Msa1165820:CDS 30.0%
AAAGTGTATTTCCATACAGT+GGG - chr7_4:57837577-57837596 None:intergenic 30.0%
! AAAAGTGTATTTCCATACAG+TGG - chr7_4:57837578-57837597 None:intergenic 30.0%
!! ACCTCTAAAACTTCTATTGT+AGG + chr7_4:57837606-57837625 Msa1165820:intron 30.0%
TACACTTATTCTTTACGCTA+AGG + chr7_4:57837697-57837716 Msa1165820:CDS 30.0%
ACACTTATTCTTTACGCTAA+GGG + chr7_4:57837698-57837717 Msa1165820:CDS 30.0%
!! ATGATAATAAACTTTGGGAC+TGG - chr7_4:57837863-57837882 None:intergenic 30.0%
! TGACATCAAGATCCTTTTTA+TGG - chr7_4:57838050-57838069 None:intergenic 30.0%
!! AAGATGATCAGTAACTTGTT+TGG + chr7_4:57838115-57838134 Msa1165820:intron 30.0%
!! ATCAGTAACTTGTTTGGATT+CGG + chr7_4:57838121-57838140 Msa1165820:intron 30.0%
TTCTAACACTACTTGGATAA+GGG - chr7_4:57838180-57838199 None:intergenic 30.0%
ATTCTAACACTACTTGGATA+AGG - chr7_4:57838181-57838200 None:intergenic 30.0%
CAATGAATTCTAACACTACT+TGG - chr7_4:57838187-57838206 None:intergenic 30.0%
ATTCATTGCACGTTATTGTT+AGG + chr7_4:57838199-57838218 Msa1165820:intron 30.0%
AAGCTTGAATGTTGAAAAGA+CGG - chr7_4:57838319-57838338 None:intergenic 30.0%
! TTATTCTCAAGTTGCTATCA+GGG + chr7_4:57838364-57838383 Msa1165820:intron 30.0%
GGATAATCAAACAACACAAA+TGG - chr7_4:57838726-57838745 None:intergenic 30.0%
TTGGATGACCAAATCAATTA+TGG - chr7_4:57838758-57838777 None:intergenic 30.0%
! TTTTCTCTGTATGCTAAACT+TGG - chr7_4:57838777-57838796 None:intergenic 30.0%
TGATGACTTTCACAAACAAA+AGG - chr7_4:57838815-57838834 None:intergenic 30.0%
AGGTAAGTTAAAAACGTAGT+TGG - chr7_4:57838839-57838858 None:intergenic 30.0%
AACCTTGAGAAATAGAAAAC+GGG - chr7_4:57838862-57838881 None:intergenic 30.0%
AAAGGAAGTTGACATTCATA+TGG + chr7_4:57838936-57838955 Msa1165820:intron 30.0%
! GTTTGTTAATTGCTTTGTAG+TGG + chr7_4:57838995-57839014 Msa1165820:intron 30.0%
! TAGCCTATATGTTAGCTTAT+TGG + chr7_4:57839046-57839065 Msa1165820:intron 30.0%
!!! GCATTTGCTTTTTACACTAA+AGG + chr7_4:57839078-57839097 Msa1165820:intron 30.0%
TGTATGGAAATGCATAAAAG+TGG - chr7_4:57839251-57839270 None:intergenic 30.0%
TTTCCATACAAAGAATATGC+TGG + chr7_4:57839261-57839280 Msa1165820:CDS 30.0%
GGAAGAAGAAGAAAAAACAA+AGG - chr7_4:57839444-57839463 None:intergenic 30.0%
AGAACATAATCATGATACGT+TGG - chr7_4:57839508-57839527 None:intergenic 30.0%
TAAGCATATAACTGGAAACA+AGG + chr7_4:57839621-57839640 Msa1165820:CDS 30.0%
AAGTGTCAAATCATATGGTA+TGG - chr7_4:57839776-57839795 None:intergenic 30.0%
! TGATTTGACACTTATTGACT+TGG + chr7_4:57839783-57839802 Msa1165820:CDS 30.0%
!! TTTTTGCTATAGAGAGGATA+TGG + chr7_4:57839902-57839921 Msa1165820:three_prime_UTR 30.0%
!! TTTTGCTATAGAGAGGATAT+GGG + chr7_4:57839903-57839922 Msa1165820:three_prime_UTR 30.0%
! GCATCTAACAGTTTTTCTTT+TGG + chr7_4:57839925-57839944 Msa1165820:three_prime_UTR 30.0%
!! TAACAGTTTTTCTTTTGGCT+TGG + chr7_4:57839930-57839949 Msa1165820:three_prime_UTR 30.0%
TATCTACAATTGCACATAAG+TGG - chr7_4:57840148-57840167 None:intergenic 30.0%
CAGTCAAATTTCTTGAGTAT+CGG - chr7_4:57840209-57840228 None:intergenic 30.0%
TCTGAAAACCGAAAAGTAGA+AGG + chr7_4:57835445-57835464 Msa1165820:five_prime_UTR 35.0%
!! TTTCAATTTTGGGTCATCGT+TGG + chr7_4:57835508-57835527 Msa1165820:five_prime_UTR 35.0%
ATCTCAATCCTCACCAATTA+GGG + chr7_4:57835664-57835683 Msa1165820:five_prime_UTR 35.0%
ACCAATTAGGGTTGAGATAA+TGG + chr7_4:57835676-57835695 Msa1165820:exon 35.0%
CCAATTAGGGTTGAGATAAT+GGG + chr7_4:57835677-57835696 Msa1165820:exon 35.0%
CAATTAGGGTTGAGATAATG+GGG + chr7_4:57835678-57835697 Msa1165820:exon 35.0%
! AATTAGGGTTGAGATAATGG+GGG + chr7_4:57835679-57835698 Msa1165820:exon 35.0%
!! ACAATGAAGCGTTGATAAGT+AGG - chr7_4:57835809-57835828 None:intergenic 35.0%
ACGTGGATAACAAACATTGA+AGG - chr7_4:57835877-57835896 None:intergenic 35.0%
! TTCCCTACTAGGTTTTTCAT+TGG + chr7_4:57835919-57835938 Msa1165820:intron 35.0%
CACCAATGAAAAACCTAGTA+GGG - chr7_4:57835924-57835943 None:intergenic 35.0%
ACACCAATGAAAAACCTAGT+AGG - chr7_4:57835925-57835944 None:intergenic 35.0%
TTGAACTTGGAAGGTCAAAA+TGG + chr7_4:57836068-57836087 Msa1165820:intron 35.0%
TGAACTTGGAAGGTCAAAAT+GGG + chr7_4:57836069-57836088 Msa1165820:intron 35.0%
TTAAAGTAGATTGAAAGCCG+CGG - chr7_4:57836402-57836421 None:intergenic 35.0%
!!! TTTTTTTCCTCCCTGTTTCA+TGG + chr7_4:57836519-57836538 Msa1165820:intron 35.0%
! ACAAGTTGAACCATGAAACA+GGG - chr7_4:57836532-57836551 None:intergenic 35.0%
! AACAAGTTGAACCATGAAAC+AGG - chr7_4:57836533-57836552 None:intergenic 35.0%
TGTTTCATGGTTCAACTTGT+TGG + chr7_4:57836532-57836551 Msa1165820:intron 35.0%
!! CAACTTGTTGGTTGTGATTA+AGG + chr7_4:57836544-57836563 Msa1165820:intron 35.0%
!! ATCTAGTCCTTCTAGTTCAT+TGG + chr7_4:57836755-57836774 Msa1165820:intron 35.0%
! TTTTCTTTTGCTAGAGGTAG+AGG + chr7_4:57836950-57836969 Msa1165820:intron 35.0%
TGTTATAAGTTTGAGTGGTC+GGG + chr7_4:57837324-57837343 Msa1165820:CDS 35.0%
AAAGTTGTCATGCCTGAAAA+TGG + chr7_4:57837438-57837457 Msa1165820:intron 35.0%
!! GCCTACAATAGAAGTTTTAG+AGG - chr7_4:57837610-57837629 None:intergenic 35.0%
CACTTATTCTTTACGCTAAG+GGG + chr7_4:57837699-57837718 Msa1165820:CDS 35.0%
AGATACAAGTATGACTGCTT+TGG - chr7_4:57837749-57837768 None:intergenic 35.0%
CTGTTGTATTCCTTACTTAC+TGG + chr7_4:57837888-57837907 Msa1165820:CDS 35.0%
AAATTACCTGCCAGTAAGTA+AGG - chr7_4:57837901-57837920 None:intergenic 35.0%
TATTGTGATGCTAGATGAAC+AGG + chr7_4:57837987-57838006 Msa1165820:intron 35.0%
TGCACGTTATTGTTAGGAAT+TGG + chr7_4:57838205-57838224 Msa1165820:intron 35.0%
! GTTATTCTCAAGTTGCTATC+AGG + chr7_4:57838363-57838382 Msa1165820:intron 35.0%
TGGAAGTGAAAATGAGAAGT+GGG - chr7_4:57838400-57838419 None:intergenic 35.0%
ATGGAAGTGAAAATGAGAAG+TGG - chr7_4:57838401-57838420 None:intergenic 35.0%
AAAATAGATGTAGTGTGTGC+TGG - chr7_4:57838511-57838530 None:intergenic 35.0%
! AGCACACACTACATCTATTT+TGG + chr7_4:57838510-57838529 Msa1165820:intron 35.0%
TCCTCGTAGTTCTTTCTATT+TGG + chr7_4:57838549-57838568 Msa1165820:intron 35.0%
ACCAAATAGAAAGAACTACG+AGG - chr7_4:57838553-57838572 None:intergenic 35.0%
GTCATTGAAAGATTCAGAGT+TGG - chr7_4:57838593-57838612 None:intergenic 35.0%
CACAAACAAAAGGATCATCA+AGG - chr7_4:57838805-57838824 None:intergenic 35.0%
GAATATGCTGGAGCTAATAT+AGG + chr7_4:57839273-57839292 Msa1165820:CDS 35.0%
GTTCCTTGTGTTGAAATTTC+TGG + chr7_4:57839418-57839437 Msa1165820:intron 35.0%
CCACAAATTTGAGTAGTATC+AGG - chr7_4:57839476-57839495 None:intergenic 35.0%
CCTGATACTACTCAAATTTG+TGG + chr7_4:57839473-57839492 Msa1165820:intron 35.0%
TTCTTTACAACCACAGTGAA+GGG + chr7_4:57839524-57839543 Msa1165820:CDS 35.0%
TTCTCACATTATCCATCTCT+GGG - chr7_4:57839597-57839616 None:intergenic 35.0%
TTTCTCACATTATCCATCTC+TGG - chr7_4:57839598-57839617 None:intergenic 35.0%
AATCAAATCTTCCTTGCTTG+TGG + chr7_4:57839732-57839751 Msa1165820:CDS 35.0%
AATCTGCTTAAATCCTTTCC+AGG - chr7_4:57839990-57840009 None:intergenic 35.0%
GAAGACCAAGACAAATAACA+TGG - chr7_4:57840092-57840111 None:intergenic 35.0%
CATATTGTAATTGTCTCCGT+TGG + chr7_4:57840111-57840130 Msa1165820:three_prime_UTR 35.0%
ACAATTGCACATAAGTGGAT+AGG - chr7_4:57840143-57840162 None:intergenic 35.0%
TTCCATGCATTATGTAGAGT+TGG + chr7_4:57840251-57840270 Msa1165820:three_prime_UTR 35.0%
TCCATGCATTATGTAGAGTT+GGG + chr7_4:57840252-57840271 Msa1165820:three_prime_UTR 35.0%
ATGTAGAGTTGGGTTCATAT+TGG + chr7_4:57840262-57840281 Msa1165820:three_prime_UTR 35.0%
!! TTGTGCTGCCTTCTACTTTT+CGG - chr7_4:57835456-57835475 None:intergenic 40.0%
ACAATAATGGCGACTGTTGT+TGG - chr7_4:57835559-57835578 None:intergenic 40.0%
GATCTCAATCCTCACCAATT+AGG + chr7_4:57835663-57835682 Msa1165820:five_prime_UTR 40.0%
TATCTCAACCCTAATTGGTG+AGG - chr7_4:57835675-57835694 None:intergenic 40.0%
CCCATTATCTCAACCCTAAT+TGG - chr7_4:57835680-57835699 None:intergenic 40.0%
! CATTGTTCGCATCGTTTTCA+TGG + chr7_4:57835823-57835842 Msa1165820:CDS 40.0%
! ACAGTGACACATTTAGGGTT+AGG - chr7_4:57836001-57836020 None:intergenic 40.0%
!!! GGTTGAAAGGGTTTTGAACT+TGG + chr7_4:57836055-57836074 Msa1165820:intron 40.0%
!!! GAAAGGGTTTTGAACTTGGA+AGG + chr7_4:57836059-57836078 Msa1165820:intron 40.0%
GAACTTGGAAGGTCAAAATG+GGG + chr7_4:57836070-57836089 Msa1165820:intron 40.0%
AATGGGTAATTCAGTCAGTG+AGG - chr7_4:57836164-57836183 None:intergenic 40.0%
TGCACCAACAGTCTCTTATT+AGG + chr7_4:57836202-57836221 Msa1165820:intron 40.0%
AGGACCTAATAAGAGACTGT+TGG - chr7_4:57836209-57836228 None:intergenic 40.0%
TAGATAGAGTCCATGTTCGT+AGG + chr7_4:57836721-57836740 Msa1165820:intron 40.0%
CACTTCTTATCCTACGAACA+TGG - chr7_4:57836734-57836753 None:intergenic 40.0%
GTCAGGGTGAACTTAGATTA+CGG - chr7_4:57837135-57837154 None:intergenic 40.0%
AGGACAGTCAACAATTGTCA+GGG - chr7_4:57837151-57837170 None:intergenic 40.0%
ACTGTTTCAGCTATGAAGCT+TGG + chr7_4:57837245-57837264 Msa1165820:intron 40.0%
CTGTTTCAGCTATGAAGCTT+GGG + chr7_4:57837246-57837265 Msa1165820:intron 40.0%
TTGCTTTCCTCCTATACCTT+TGG + chr7_4:57837378-57837397 Msa1165820:CDS 40.0%
TTTCCTCCTATACCTTTGGA+TGG + chr7_4:57837382-57837401 Msa1165820:CDS 40.0%
TTCCTCCTATACCTTTGGAT+GGG + chr7_4:57837383-57837402 Msa1165820:CDS 40.0%
! ACTTACCCATCCAAAGGTAT+AGG - chr7_4:57837391-57837410 None:intergenic 40.0%
ATGCAAACTTACCCATCCAA+AGG - chr7_4:57837397-57837416 None:intergenic 40.0%
ATTCAAAGGCTCAGATCTCA+AGG - chr7_4:57837473-57837492 None:intergenic 40.0%
TTCATACGTAAGTGCAAGCA+AGG + chr7_4:57837632-57837651 Msa1165820:CDS 40.0%
TCATACGTAAGTGCAAGCAA+GGG + chr7_4:57837633-57837652 Msa1165820:CDS 40.0%
TTACGCTAAGGGGAAATACA+AGG + chr7_4:57837709-57837728 Msa1165820:CDS 40.0%
CTAAGGGGAAATACAAGGAT+GGG + chr7_4:57837714-57837733 Msa1165820:CDS 40.0%
!! TGCTCTTGCATTGTTTTACG+TGG + chr7_4:57837808-57837827 Msa1165820:CDS 40.0%
!! ATTGTTTTACGTGGCATGCA+AGG + chr7_4:57837817-57837836 Msa1165820:CDS 40.0%
!! AACTTTGGGACTGGATTGAA+TGG - chr7_4:57837854-57837873 None:intergenic 40.0%
TGTATTCCTTACTTACTGGC+AGG + chr7_4:57837892-57837911 Msa1165820:CDS 40.0%
!! TGACGGGCTAAACTATACAA+TGG - chr7_4:57838420-57838439 None:intergenic 40.0%
TTGTATAGTTTAGCCCGTCA+AGG + chr7_4:57838420-57838439 Msa1165820:intron 40.0%
AAGAACTACGAGGAATGAGA+AGG - chr7_4:57838543-57838562 None:intergenic 40.0%
!! ACAAGGGAGTACTAAACAGA+TGG + chr7_4:57838649-57838668 Msa1165820:intron 40.0%
TCAAACAACACAAATGGTGC+AGG - chr7_4:57838720-57838739 None:intergenic 40.0%
CTTGAGAAATAGAAAACGGG+AGG - chr7_4:57838859-57838878 None:intergenic 40.0%
!! CTCCCGTTTTCTATTTCTCA+AGG + chr7_4:57838857-57838876 Msa1165820:intron 40.0%
GTTCTTTCTTGCTGCAAAGT+CGG + chr7_4:57839146-57839165 Msa1165820:CDS 40.0%
TTCTTTCTTGCTGCAAAGTC+GGG + chr7_4:57839147-57839166 Msa1165820:CDS 40.0%
GCTCCAGCATATTCTTTGTA+TGG - chr7_4:57839267-57839286 None:intergenic 40.0%
TATGCTGGAGCTAATATAGG+TGG + chr7_4:57839276-57839295 Msa1165820:CDS 40.0%
CATATAAAGTGAGACTCACC+TGG - chr7_4:57839371-57839390 None:intergenic 40.0%
AGGCCAGAAATTTCAACACA+AGG - chr7_4:57839424-57839443 None:intergenic 40.0%
GTTCTTTACAACCACAGTGA+AGG + chr7_4:57839523-57839542 Msa1165820:CDS 40.0%
TCTTTACAACCACAGTGAAG+GGG + chr7_4:57839525-57839544 Msa1165820:CDS 40.0%
! AAGAAGGAACAAGGAAGTAC+AGG + chr7_4:57839548-57839567 Msa1165820:CDS 40.0%
AGTAGTACTCCCTCAAATTC+TGG + chr7_4:57839679-57839698 Msa1165820:CDS 40.0%
ATATGGTATGGACGCAGAAT+TGG - chr7_4:57839764-57839783 None:intergenic 40.0%
GATAAGGAACATTCAGAGCT+AGG + chr7_4:57839864-57839883 Msa1165820:three_prime_UTR 40.0%
AGAGAACTATGATTCAAGCG+TGG + chr7_4:57839953-57839972 Msa1165820:three_prime_UTR 40.0%
GGTTTCTTACATTCCTGGAA+AGG + chr7_4:57839974-57839993 Msa1165820:three_prime_UTR 40.0%
!! TTTTGTTTGCTTGGGAATGG+AGG - chr7_4:57840065-57840084 None:intergenic 40.0%
CCATTCCCAAGCAAACAAAA+CGG + chr7_4:57840065-57840084 Msa1165820:three_prime_UTR 40.0%
!!! ATGGACCGTTTTGTTTGCTT+GGG - chr7_4:57840073-57840092 None:intergenic 40.0%
! ACGGTCCATGTTATTTGTCT+TGG + chr7_4:57840084-57840103 Msa1165820:three_prime_UTR 40.0%
ACCCAACTCTACATAATGCA+TGG - chr7_4:57840256-57840275 None:intergenic 40.0%
ACACACAGACACACACGTTT+GGG + chr7_4:57835403-57835422 Msa1165820:five_prime_UTR 45.0%
!! TGTTGTTGGCTTCGGTAACA+AGG - chr7_4:57835545-57835564 None:intergenic 45.0%
GATCTTCTCGGATCTGATTC+TGG + chr7_4:57835618-57835637 Msa1165820:five_prime_UTR 45.0%
! ATCGCTTTCTTTTGCACCGT+CGG + chr7_4:57835728-57835747 Msa1165820:CDS 45.0%
! TCGCATCGTTTTCATGGTTC+CGG + chr7_4:57835829-57835848 Msa1165820:CDS 45.0%
CTGTTGGTGCAGAACCAAAT+AGG - chr7_4:57836193-57836212 None:intergenic 45.0%
!!! TCTTGTCCCTTGTTTTACCG+CGG + chr7_4:57836382-57836401 Msa1165820:CDS 45.0%
TGAAAGCCGCGGTAAAACAA+GGG - chr7_4:57836391-57836410 None:intergenic 45.0%
TTGAAAGCCGCGGTAAAACA+AGG - chr7_4:57836392-57836411 None:intergenic 45.0%
AGTTGAACCATGAAACAGGG+AGG - chr7_4:57836529-57836548 None:intergenic 45.0%
TTCCCACTCTTGTGATTGCA+CGG - chr7_4:57836880-57836899 None:intergenic 45.0%
! CTTATCCCACTAAGTGGGTT+CGG - chr7_4:57837065-57837084 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr7_4:57837070-57837089 None:intergenic 45.0%
CAGGACAGTCAACAATTGTC+AGG - chr7_4:57837152-57837171 None:intergenic 45.0%
!! TCCTGTCACTTTGTCTAGCA+TGG + chr7_4:57837281-57837300 Msa1165820:CDS 45.0%
!! CCTGTCACTTTGTCTAGCAT+GGG + chr7_4:57837282-57837301 Msa1165820:CDS 45.0%
TCACTTTGTCTAGCATGGGT+TGG + chr7_4:57837286-57837305 Msa1165820:CDS 45.0%
CAAGTCATCAGACAGACTGA+CGG - chr7_4:57837358-57837377 None:intergenic 45.0%
! TACCCATCCAAAGGTATAGG+AGG - chr7_4:57837388-57837407 None:intergenic 45.0%
GCTAAGGGGAAATACAAGGA+TGG + chr7_4:57837713-57837732 Msa1165820:CDS 45.0%
! TTCTCAAGTTGCTATCAGGG+TGG + chr7_4:57838367-57838386 Msa1165820:intron 45.0%
! TCTCAAGTTGCTATCAGGGT+GGG + chr7_4:57838368-57838387 Msa1165820:intron 45.0%
AGAACAGAGCAAAGCCTTGA+CGG - chr7_4:57838437-57838456 None:intergenic 45.0%
ATGTAGTGTGTGCTGGAATG+AGG - chr7_4:57838504-57838523 None:intergenic 45.0%
TGAGATGCTTATTGCTGCAG+TGG + chr7_4:57839224-57839243 Msa1165820:CDS 45.0%
GAGATGCTTATTGCTGCAGT+GGG + chr7_4:57839225-57839244 Msa1165820:CDS 45.0%
TCAACTTCAAAGCATGCCCA+AGG - chr7_4:57839323-57839342 None:intergenic 45.0%
TTACCATGATACAGTCCACC+AGG + chr7_4:57839350-57839369 Msa1165820:CDS 45.0%
ATAAAGTGAGACTCACCTGG+TGG - chr7_4:57839368-57839387 None:intergenic 45.0%
TCACGAACGTTTGTTCCGAT+TGG + chr7_4:57839571-57839590 Msa1165820:CDS 45.0%
TTATCCATCTCTGGGCCAAT+CGG - chr7_4:57839589-57839608 None:intergenic 45.0%
GGCAGTGAACCAGAATTTGA+GGG - chr7_4:57839691-57839710 None:intergenic 45.0%
AGGCAGTGAACCAGAATTTG+AGG - chr7_4:57839692-57839711 None:intergenic 45.0%
! GCATCAGAGTTTGAAGCATC+AGG - chr7_4:57839712-57839731 None:intergenic 45.0%
ATTGGACACATCCACAAGCA+AGG - chr7_4:57839746-57839765 None:intergenic 45.0%
AGGAACTTCTTCTGGGTAAC+TGG - chr7_4:57839815-57839834 None:intergenic 45.0%
CCTTATCGATCACCTAAGAC+CGG - chr7_4:57839851-57839870 None:intergenic 45.0%
AGGAACATTCAGAGCTAGGT+TGG + chr7_4:57839868-57839887 Msa1165820:three_prime_UTR 45.0%
!! ACATTCAGAGCTAGGTTGGT+TGG + chr7_4:57839872-57839891 Msa1165820:three_prime_UTR 45.0%
!! CATTCAGAGCTAGGTTGGTT+GGG + chr7_4:57839873-57839892 Msa1165820:three_prime_UTR 45.0%
AGCGTGGTTTCTTACATTCC+TGG + chr7_4:57839969-57839988 Msa1165820:three_prime_UTR 45.0%
!!! CCGTTTTGTTTGCTTGGGAA+TGG - chr7_4:57840068-57840087 None:intergenic 45.0%
!!! CATGGACCGTTTTGTTTGCT+TGG - chr7_4:57840074-57840093 None:intergenic 45.0%
AGTGGATAGGACACAACCAA+CGG - chr7_4:57840130-57840149 None:intergenic 45.0%
!! TTAAAAAAAAAAAAAAAAAC+AGG - chr7_4:57837520-57837539 None:intergenic 5.0%
!!! AATAAAAACTAATTTTTATA+TGG + chr7_4:57838075-57838094 Msa1165820:intron 5.0%
GTCTGTGTGTGTGTGGGAAT+TGG - chr7_4:57835393-57835412 None:intergenic 50.0%
GTGTGTGTCTGTGTGTGTGT+GGG - chr7_4:57835399-57835418 None:intergenic 50.0%
CACACACAGACACACACGTT+TGG + chr7_4:57835402-57835421 Msa1165820:five_prime_UTR 50.0%
!! ATGGCGACTGTTGTTGGCTT+CGG - chr7_4:57835553-57835572 None:intergenic 50.0%
! TCTCGGATCTGATTCTGGCT+AGG + chr7_4:57835623-57835642 Msa1165820:five_prime_UTR 50.0%
! CTCGGATCTGATTCTGGCTA+GGG + chr7_4:57835624-57835643 Msa1165820:five_prime_UTR 50.0%
GGAAGGTCAAAATGGGGTGA+AGG + chr7_4:57836076-57836095 Msa1165820:intron 50.0%
TACCCGTGCAATCACAAGAG+TGG + chr7_4:57836874-57836893 Msa1165820:intron 50.0%
ACCCGTGCAATCACAAGAGT+GGG + chr7_4:57836875-57836894 Msa1165820:intron 50.0%
TCCCACTCTTGTGATTGCAC+GGG - chr7_4:57836879-57836898 None:intergenic 50.0%
GTGCAATCACAAGAGTGGGA+AGG + chr7_4:57836879-57836898 Msa1165820:intron 50.0%
CGAACCCACTTAGTGGGATA+AGG + chr7_4:57837063-57837082 Msa1165820:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr7_4:57837071-57837090 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr7_4:57837068-57837087 Msa1165820:intron 50.0%
! GGGATAAGGCTTGGTTGTTG+TGG + chr7_4:57837077-57837096 Msa1165820:intron 50.0%
CCCATGCTAGACAAAGTGAC+AGG - chr7_4:57837285-57837304 None:intergenic 50.0%
!! CTTTGTCTAGCATGGGTTGG+TGG + chr7_4:57837289-57837308 Msa1165820:CDS 50.0%
AGAGGCTAGGATGACACATG+TGG + chr7_4:57837551-57837570 Msa1165820:intron 50.0%
GAACAGAGCAAAGCCTTGAC+GGG - chr7_4:57838436-57838455 None:intergenic 50.0%
TGTGTGCTGGAATGAGGACA+CGG - chr7_4:57838498-57838517 None:intergenic 50.0%
TGCAAAGTCGGGATTCATCC+AGG + chr7_4:57839158-57839177 Msa1165820:CDS 50.0%
GCTAATATAGGTGGATCCCG+TGG + chr7_4:57839285-57839304 Msa1165820:CDS 50.0%
!! TCACCTGGTGGACTGTATCA+TGG - chr7_4:57839356-57839375 None:intergenic 50.0%
AACCACAGTGAAGGGGAAGA+AGG + chr7_4:57839532-57839551 Msa1165820:CDS 50.0%
TTCCTTCTTCCCCTTCACTG+TGG - chr7_4:57839537-57839556 None:intergenic 50.0%
GTGAAGGGGAAGAAGGAACA+AGG + chr7_4:57839539-57839558 Msa1165820:CDS 50.0%
CTGCTGCAGGAACTTCTTCT+GGG - chr7_4:57839822-57839841 None:intergenic 50.0%
TCTGCTGCAGGAACTTCTTC+TGG - chr7_4:57839823-57839842 None:intergenic 50.0%
GTTCCTGCAGCAGATAAAGC+CGG + chr7_4:57839829-57839848 Msa1165820:CDS 50.0%
CAGCAGATAAAGCCGGTCTT+AGG + chr7_4:57839836-57839855 Msa1165820:CDS 50.0%
CCGGTCTTAGGTGATCGATA+AGG + chr7_4:57839848-57839867 Msa1165820:exon 50.0%
TTGGGAATGGAGGCTGACAA+CGG - chr7_4:57840055-57840074 None:intergenic 50.0%
CGTGTGTGTCTGTGTGTGTG+TGG - chr7_4:57835400-57835419 None:intergenic 55.0%
! ACGTTTGGGTTCTCGCGTTG+TGG + chr7_4:57835417-57835436 Msa1165820:five_prime_UTR 55.0%
! TTTGGGTTCTCGCGTTGTGG+TGG + chr7_4:57835420-57835439 Msa1165820:five_prime_UTR 55.0%
AGCCAAAGCGATTGCACCGA+CGG - chr7_4:57835747-57835766 None:intergenic 55.0%
! ACTAAGTGGGTTCGGCTGCA+TGG - chr7_4:57837057-57837076 None:intergenic 55.0%
ATGCAGCCGAACCCACTTAG+TGG + chr7_4:57837056-57837075 Msa1165820:intron 55.0%
TGCAGCCGAACCCACTTAGT+GGG + chr7_4:57837057-57837076 Msa1165820:intron 55.0%
GACACATGTGGCCCACTGTA+TGG + chr7_4:57837563-57837582 Msa1165820:intron 55.0%
AAGCAGCTTCGTCAGCATCC+TGG - chr7_4:57839179-57839198 None:intergenic 55.0%
AAGGCTAGCGGTCAAACCAC+GGG - chr7_4:57839304-57839323 None:intergenic 55.0%
CAAGGCTAGCGGTCAAACCA+CGG - chr7_4:57839305-57839324 None:intergenic 55.0%
!! GTGGTTTGACCGCTAGCCTT+GGG + chr7_4:57839304-57839323 Msa1165820:CDS 55.0%
CAAAGCATGCCCAAGGCTAG+CGG - chr7_4:57839316-57839335 None:intergenic 55.0%
! TGTTCCGATTGGCCCAGAGA+TGG + chr7_4:57839582-57839601 Msa1165820:CDS 55.0%
! AGACCGGCTTTATCTGCTGC+AGG - chr7_4:57839835-57839854 None:intergenic 55.0%
TGGGAATGGAGGCTGACAAC+GGG - chr7_4:57840054-57840073 None:intergenic 55.0%
CACCGTCGGTGCAATCGCTT+TGG + chr7_4:57835742-57835761 Msa1165820:CDS 60.0%
!! CTAGCATGGGTTGGTGGTCC+TGG + chr7_4:57837295-57837314 Msa1165820:CDS 60.0%
! CGTGGTTTGACCGCTAGCCT+TGG + chr7_4:57839303-57839322 Msa1165820:CDS 60.0%
GGGAATGGAGGCTGACAACG+GGG - chr7_4:57840053-57840072 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57835353 57840329 57835353 ID=Msa1165820;Name=Msa1165820
chr7_4 mRNA 57835353 57840329 57835353 ID=Msa1165820-mRNA-1;Parent=Msa1165820;Name=Msa1165820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=342|1|1|1|1|1|6|468|420
chr7_4 exon 57835353 57835850 57835353 ID=Msa1165820-mRNA-1:exon:17538;Parent=Msa1165820-mRNA-1
chr7_4 exon 57836363 57836436 57836363 ID=Msa1165820-mRNA-1:exon:17539;Parent=Msa1165820-mRNA-1
chr7_4 exon 57837255 57837404 57837255 ID=Msa1165820-mRNA-1:exon:17540;Parent=Msa1165820-mRNA-1
chr7_4 exon 57837628 57837913 57837628 ID=Msa1165820-mRNA-1:exon:17541;Parent=Msa1165820-mRNA-1
chr7_4 exon 57839138 57839371 57839138 ID=Msa1165820-mRNA-1:exon:17542;Parent=Msa1165820-mRNA-1
chr7_4 exon 57839499 57840329 57839499 ID=Msa1165820-mRNA-1:exon:17543;Parent=Msa1165820-mRNA-1
chr7_4 five_prime_UTR 57835353 57835694 57835353 ID=Msa1165820-mRNA-1:five_prime_utr;Parent=Msa1165820-mRNA-1
chr7_4 CDS 57835695 57835850 57835695 ID=Msa1165820-mRNA-1:cds;Parent=Msa1165820-mRNA-1
chr7_4 CDS 57836363 57836436 57836363 ID=Msa1165820-mRNA-1:cds;Parent=Msa1165820-mRNA-1
chr7_4 CDS 57837255 57837404 57837255 ID=Msa1165820-mRNA-1:cds;Parent=Msa1165820-mRNA-1
chr7_4 CDS 57837628 57837913 57837628 ID=Msa1165820-mRNA-1:cds;Parent=Msa1165820-mRNA-1
chr7_4 CDS 57839138 57839371 57839138 ID=Msa1165820-mRNA-1:cds;Parent=Msa1165820-mRNA-1
chr7_4 CDS 57839499 57839861 57839499 ID=Msa1165820-mRNA-1:cds;Parent=Msa1165820-mRNA-1
chr7_4 three_prime_UTR 57839862 57840329 57839862 ID=Msa1165820-mRNA-1:three_prime_utr;Parent=Msa1165820-mRNA-1
Gene Sequence

>Msa1165820

ATGGGGGTACTGCTTCCGCTTTTTTTCTATGTTATCGCTTTCTTTTGCACCGTCGGTGCAATCGCTTTGGCTATTCTTCACATTTACAGACACCTTCTTAATTATACTGAACCTACTTATCAACGCTTCATTGTTCGCATCGTTTTCATGGTTCCGGTTTATGCACTGATGTCTTTCTTGTCCCTTGTTTTACCGCGGCTTTCAATCTACTTTAATTCAATCCGTGAAGTCTATGAAGCTTGGGTCATTTACAATTTCCTGTCACTTTGTCTAGCATGGGTTGGTGGTCCTGGATCAGTTGTTATAAGTTTGAGTGGTCGGGTTCTGAAGCCGTCAGTCTGTCTGATGACTTGTTGCTTTCCTCCTATACCTTTGGATGGGCGTTTCATACGTAAGTGCAAGCAAGGGTGTTTGCAGTTTGTGATTTTGAAGCCCATTTTAGTTGTTGTTACACTTATTCTTTACGCTAAGGGGAAATACAAGGATGGGAATTTCAATCCAAAGCAGTCATACTTGTATCTCACAATCATCTATACATTCTCATATACAATGGCTCTCTATGCTCTTGCATTGTTTTACGTGGCATGCAAGGATCTGCTTCAGCCATTCAATCCAGTCCCAAAGTTTATTATCATAAAGTCTGTTGTATTCCTTACTTACTGGCAGGGGGTGCTGTTCTTTCTTGCTGCAAAGTCGGGATTCATCCAGGATGCTGACGAAGCTGCTTTACTTCAAAATTTTATCATTTGTGTTGAGATGCTTATTGCTGCAGTGGGCCACTTTTATGCATTTCCATACAAAGAATATGCTGGAGCTAATATAGGTGGATCCCGTGGTTTGACCGCTAGCCTTGGGCATGCTTTGAAGTTGAATGACTTTTACCATGATACAGTCCACCAGTTCGCACCAACGTATCATGATTATGTTCTTTACAACCACAGTGAAGGGGAAGAAGGAACAAGGAAGTACAGGTCACGAACGTTTGTTCCGATTGGCCCAGAGATGGATAATGTGAGAAAAAATAAGCATATAACTGGAAACAAGGTAGATGACATACAACTAACAAGCTTCTCTTCTGATAGTAGTACTCCCTCAAATTCTGGTTCACTGCCTGATGCTTCAAACTCTGATGCAATCAAATCTTCCTTGCTTGTGGATGTGTCCAATTCTGCGTCCATACCATATGATTTGACACTTATTGACTTGGATGTATCCAGTTACCCAGAAGAAGTTCCTGCAGCAGATAAAGCCGGTCTTAGGTGA
Protein sequence

>Msa1165820

MGVLLPLFFYVIAFFCTVGAIALAILHIYRHLLNYTEPTYQRFIVRIVFMVPVYALMSFLSLVLPRLSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGSVVISLSGRVLKPSVCLMTCCFPPIPLDGRFIRKCKQGCLQFVILKPILVVVTLILYAKGKYKDGNFNPKQSYLYLTIIYTFSYTMALYALALFYVACKDLLQPFNPVPKFIIIKSVVFLTYWQGVLFFLAAKSGFIQDADEAALLQNFIICVEMLIAAVGHFYAFPYKEYAGANIGGSRGLTASLGHALKLNDFYHDTVHQFAPTYHDYVLYNHSEGEEGTRKYRSRTFVPIGPEMDNVRKNKHITGNKVDDIQLTSFSSDSSTPSNSGSLPDASNSDAIKSSLLVDVSNSASIPYDLTLIDLDVSSYPEEVPAADKAGLR*