Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155830 | XP_003623962.2 | 95.152 | 330 | 16 | 0 | 1 | 330 | 1 | 330 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155830 | sp|Q9LQ89|ROGF2_ARATH | 55.828 | 326 | 132 | 7 | 9 | 325 | 9 | 331 | 2.95e-111 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155830 | G7L4N2 | 95.152 | 330 | 16 | 0 | 1 | 330 | 1 | 330 | 0.0 | 626 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa1155830 | 0.822756 | 1.997919e-53 | -8.615850e-47 |
| Msa0028420 | Msa1155830 | 0.803728 | 3.035377e-49 | -8.615850e-47 |
| Msa0028580 | Msa1155830 | 0.807080 | 6.018531e-50 | -8.615850e-47 |
| Msa0052260 | Msa1155830 | 0.803312 | 3.702633e-49 | -8.615850e-47 |
| Msa0076250 | Msa1155830 | 0.805274 | 1.444473e-49 | -8.615850e-47 |
| Msa0097260 | Msa1155830 | 0.804206 | 2.413896e-49 | -8.615850e-47 |
| Msa0795870 | Msa1155830 | 0.808640 | 2.804581e-50 | -8.615850e-47 |
| Msa0833650 | Msa1155830 | 0.819762 | 9.796416e-53 | -8.615850e-47 |
| Msa0182240 | Msa1155830 | 0.803965 | 2.709389e-49 | -8.615850e-47 |
| Msa0225860 | Msa1155830 | 0.820137 | 8.039353e-53 | -8.615850e-47 |
| Msa1019470 | Msa1155830 | 0.812599 | 3.909672e-51 | -8.615850e-47 |
| Msa1028100 | Msa1155830 | 0.834949 | 2.229013e-56 | -8.615850e-47 |
| Msa0298470 | Msa1155830 | 0.800845 | 1.190358e-48 | -8.615850e-47 |
| Msa0340500 | Msa1155830 | 0.801424 | 9.061630e-49 | -8.615850e-47 |
| Msa1132840 | Msa1155830 | 0.822204 | 2.683915e-53 | -8.615850e-47 |
| Msa1155830 | Msa1161680 | 0.802585 | 5.231107e-49 | -8.615850e-47 |
| Msa1155830 | Msa1224930 | 0.800445 | 1.436155e-48 | -8.615850e-47 |
| Msa1155830 | Msa1440880 | 0.812958 | 3.261727e-51 | -8.615850e-47 |
| Msa0580370 | Msa1155830 | 0.820740 | 5.845366e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155830 | MtrunA17_Chr7g0247761 | 95.152 | 330 | 16 | 0 | 1 | 330 | 1 | 330 | 0.0 | 626 |
| Msa1155830 | MtrunA17_Chr8g0348921 | 70.219 | 319 | 73 | 5 | 18 | 325 | 11 | 318 | 6.51e-154 | 440 |
| Msa1155830 | MtrunA17_Chr7g0240501 | 62.617 | 214 | 79 | 1 | 113 | 325 | 184 | 397 | 4.30e-86 | 272 |
| Msa1155830 | MtrunA17_Chr4g0008771 | 61.395 | 215 | 79 | 1 | 113 | 327 | 96 | 306 | 1.89e-84 | 265 |
| Msa1155830 | MtrunA17_Chr4g0038651 | 56.757 | 222 | 96 | 0 | 109 | 330 | 83 | 304 | 2.63e-82 | 259 |
| Msa1155830 | MtrunA17_Chr3g0112731 | 58.257 | 218 | 91 | 0 | 113 | 330 | 100 | 317 | 1.01e-80 | 256 |
| Msa1155830 | MtrunA17_Chr5g0436141 | 58.333 | 216 | 90 | 0 | 115 | 330 | 84 | 299 | 1.11e-77 | 248 |
| Msa1155830 | MtrunA17_Chr4g0004771 | 52.778 | 216 | 93 | 3 | 111 | 325 | 88 | 295 | 1.90e-73 | 236 |
| Msa1155830 | MtrunA17_Chr2g0331631 | 50.228 | 219 | 102 | 2 | 113 | 330 | 86 | 298 | 3.41e-71 | 230 |
| Msa1155830 | MtrunA17_Chr6g0485861 | 52.336 | 214 | 95 | 3 | 113 | 325 | 96 | 303 | 8.21e-70 | 227 |
| Msa1155830 | MtrunA17_Chr5g0408591 | 46.083 | 217 | 110 | 1 | 109 | 325 | 114 | 323 | 1.59e-58 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155830 | AT1G01700.5 | 55.793 | 328 | 133 | 7 | 9 | 327 | 9 | 333 | 8.36e-115 | 337 |
| Msa1155830 | AT1G01700.2 | 55.793 | 328 | 133 | 7 | 9 | 327 | 9 | 333 | 8.36e-115 | 337 |
| Msa1155830 | AT1G01700.1 | 55.828 | 326 | 132 | 7 | 9 | 325 | 9 | 331 | 3.00e-112 | 335 |
| Msa1155830 | AT4G00460.1 | 56.289 | 318 | 122 | 9 | 16 | 326 | 13 | 320 | 1.22e-110 | 325 |
| Msa1155830 | AT1G01700.3 | 54.655 | 333 | 132 | 8 | 9 | 325 | 9 | 338 | 3.74e-110 | 328 |
| Msa1155830 | AT4G00460.2 | 55.975 | 318 | 123 | 9 | 16 | 326 | 13 | 320 | 1.93e-108 | 324 |
| Msa1155830 | AT4G00460.4 | 55.975 | 318 | 123 | 9 | 16 | 326 | 13 | 320 | 1.93e-108 | 324 |
| Msa1155830 | AT1G01700.4 | 51.124 | 356 | 132 | 8 | 9 | 325 | 9 | 361 | 8.42e-106 | 319 |
| Msa1155830 | AT5G02010.1 | 61.538 | 221 | 83 | 1 | 112 | 330 | 69 | 289 | 2.02e-89 | 278 |
| Msa1155830 | AT2G45890.1 | 59.307 | 231 | 85 | 3 | 100 | 325 | 80 | 306 | 3.24e-89 | 275 |
| Msa1155830 | AT5G05940.2 | 57.207 | 222 | 95 | 0 | 109 | 330 | 98 | 319 | 4.17e-86 | 268 |
| Msa1155830 | AT5G05940.1 | 57.207 | 222 | 95 | 0 | 109 | 330 | 98 | 319 | 8.51e-85 | 268 |
| Msa1155830 | AT4G38430.1 | 56.277 | 231 | 98 | 1 | 100 | 330 | 80 | 307 | 1.76e-82 | 260 |
| Msa1155830 | AT3G55660.2 | 51.584 | 221 | 103 | 1 | 110 | 330 | 104 | 320 | 5.32e-75 | 238 |
| Msa1155830 | AT4G00460.3 | 62.712 | 177 | 63 | 2 | 152 | 325 | 10 | 186 | 4.87e-74 | 232 |
| Msa1155830 | AT3G55660.1 | 51.584 | 221 | 103 | 1 | 110 | 330 | 104 | 320 | 8.99e-74 | 238 |
| Msa1155830 | AT1G52240.1 | 53.052 | 213 | 89 | 2 | 114 | 325 | 105 | 307 | 2.18e-72 | 234 |
| Msa1155830 | AT1G79860.1 | 52.558 | 215 | 91 | 3 | 112 | 325 | 91 | 295 | 2.56e-72 | 233 |
| Msa1155830 | AT3G24620.1 | 50.698 | 215 | 98 | 2 | 112 | 325 | 84 | 291 | 8.80e-70 | 226 |
| Msa1155830 | AT4G13240.1 | 49.065 | 214 | 101 | 2 | 113 | 325 | 74 | 280 | 3.35e-67 | 219 |
| Msa1155830 | AT3G16130.1 | 50.698 | 215 | 98 | 3 | 112 | 325 | 89 | 296 | 5.29e-66 | 217 |
| Msa1155830 | AT5G19560.2 | 39.931 | 288 | 140 | 5 | 39 | 325 | 14 | 269 | 1.51e-64 | 209 |
| Msa1155830 | AT5G19560.4 | 39.931 | 288 | 140 | 5 | 39 | 325 | 14 | 269 | 3.44e-63 | 209 |
| Msa1155830 | AT5G19560.1 | 47.196 | 214 | 105 | 2 | 113 | 325 | 44 | 250 | 1.18e-62 | 207 |
| Msa1155830 | AT5G19560.5 | 47.196 | 214 | 105 | 2 | 113 | 325 | 44 | 250 | 1.18e-62 | 207 |
| Msa1155830 | AT1G31650.2 | 46.479 | 213 | 107 | 1 | 113 | 325 | 108 | 313 | 1.79e-56 | 192 |
| Msa1155830 | AT1G31650.1 | 46.479 | 213 | 107 | 1 | 113 | 325 | 136 | 341 | 3.19e-56 | 192 |
| Msa1155830 | AT5G19560.3 | 43.089 | 123 | 62 | 2 | 204 | 325 | 5 | 120 | 4.33e-25 | 104 |
Find 116 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAGAATATTACTATTTA+TGG | 0.066407 | 7_4:-43758291 | None:intergenic |
| CAAGACTCAGCTGCTATTAT+TGG | 0.157288 | 7_4:-43758575 | None:intergenic |
| CTATTATTGGCTTCCATAAA+AGG | 0.163944 | 7_4:-43758562 | None:intergenic |
| CCTTATAGGGTCACATTTAA+AGG | 0.180836 | 7_4:-43758504 | None:intergenic |
| TGAACTTTCACAAACTTCTT+TGG | 0.225497 | 7_4:+43759143 | Msa1155830:three_prime_UTR |
| CCTTTAAATGTGACCCTATA+AGG | 0.229587 | 7_4:+43758504 | Msa1155830:three_prime_UTR |
| GACAATGATCTCTTGGATTC+AGG | 0.233036 | 7_4:+43757088 | Msa1155830:CDS |
| TTCCAAGACATTTGCCTTAT+AGG | 0.244815 | 7_4:-43758518 | None:intergenic |
| TCTACATTCTTCCAAATCTA+AGG | 0.248306 | 7_4:-43759525 | None:intergenic |
| AGATCATCTATATATGTTTC+TGG | 0.259898 | 7_4:-43758326 | None:intergenic |
| AAGAAATGTTCTTCAACAAT+AGG | 0.270989 | 7_4:-43758380 | None:intergenic |
| AGAAAGCTATTCAAGAGTTT+TGG | 0.272823 | 7_4:+43759368 | Msa1155830:three_prime_UTR |
| GTATCATCCTTCACCTTCTA+TGG | 0.280482 | 7_4:+43756817 | Msa1155830:CDS |
| TCCAAGACATTTGCCTTATA+GGG | 0.297843 | 7_4:-43758517 | None:intergenic |
| GTTTACAAAAGACTGTTAAA+TGG | 0.299408 | 7_4:-43759503 | None:intergenic |
| TTCCTTCGCCTTCACCTTCT+CGG | 0.302548 | 7_4:+43756990 | Msa1155830:CDS |
| CGTGCTACTAGTACCTTATA+TGG | 0.309555 | 7_4:-43758620 | None:intergenic |
| CTTTCGGATACTGCCGAGTT+TGG | 0.311241 | 7_4:+43756891 | Msa1155830:CDS |
| AGGCTAAACCTGGTCTTTCT+AGG | 0.314752 | 7_4:+43757020 | Msa1155830:CDS |
| CTAAACTTACCTTGTTGTAT+TGG | 0.316872 | 7_4:-43759179 | None:intergenic |
| AAATTCGCGAAGCTTCTTCT+AGG | 0.326700 | 7_4:+43757387 | Msa1155830:CDS |
| CGACGATATAATTCCATATA+AGG | 0.335709 | 7_4:+43758607 | Msa1155830:three_prime_UTR |
| GAAAGAAGTAAAAGAGCTTA+TGG | 0.337222 | 7_4:+43759038 | Msa1155830:three_prime_UTR |
| ATGGATAAATCATTCAAGTT+TGG | 0.355857 | 7_4:+43756776 | Msa1155830:CDS |
| AATTCTGCAGCGACAGTATT+CGG | 0.363238 | 7_4:+43757579 | Msa1155830:intron |
| CACCATTTCTCATCTTTCCT+TGG | 0.364371 | 7_4:-43758164 | None:intergenic |
| GTTGAAATATAAAGCATAAC+AGG | 0.365363 | 7_4:+43759642 | Msa1155830:three_prime_UTR |
| TGTCCACAGTATACATATAT+TGG | 0.365840 | 7_4:-43758879 | None:intergenic |
| AGAAATGTTCTTCAACAATA+GGG | 0.389400 | 7_4:-43758379 | None:intergenic |
| CTTCTAAATATTGTGCAGTT+GGG | 0.391083 | 7_4:-43757704 | None:intergenic |
| GAGACAGTCAAGAAGGCGTT+CGG | 0.398257 | 7_4:-43758911 | None:intergenic |
| AGATTGAGTGGTGATTCTTT+CGG | 0.410929 | 7_4:+43756875 | Msa1155830:CDS |
| ACTTGATGACAATGATCTCT+TGG | 0.413638 | 7_4:+43757081 | Msa1155830:CDS |
| AAACCTGGTCTTTCTAGGTT+AGG | 0.418055 | 7_4:+43757025 | Msa1155830:CDS |
| GGAAACACCTTACAGAGAAA+AGG | 0.424153 | 7_4:+43758234 | Msa1155830:CDS |
| CAGAGTGGACGAGGAAATCT+AGG | 0.428454 | 7_4:+43758844 | Msa1155830:three_prime_UTR |
| TGGCATTCAACATTGTTGCT+TGG | 0.438300 | 7_4:+43759397 | Msa1155830:three_prime_UTR |
| GAATGTAGACAGTTAGTAGA+TGG | 0.444094 | 7_4:+43759539 | Msa1155830:three_prime_UTR |
| CCGGGGAGAACACAAGGAAC+TGG | 0.444787 | 7_4:-43758191 | None:intergenic |
| CACATATTCTTGAACTAAGA+TGG | 0.447519 | 7_4:+43756757 | Msa1155830:exon |
| GACTTCTCAGAGAGGCCACC+GGG | 0.448393 | 7_4:-43758209 | None:intergenic |
| ACTAAATGATGATCCATAGA+AGG | 0.448518 | 7_4:-43756830 | None:intergenic |
| AAAGAAGTTTGTGAAAGTTC+AGG | 0.448944 | 7_4:-43759141 | None:intergenic |
| ACCCTATAAGGCAAATGTCT+TGG | 0.461394 | 7_4:+43758516 | Msa1155830:three_prime_UTR |
| GAAAGAATTACCGTAGAGAT+TGG | 0.465229 | 7_4:-43757472 | None:intergenic |
| AGATATTTATATCAATCTTC+CGG | 0.467453 | 7_4:+43757923 | Msa1155830:CDS |
| TCTTCTAAATATTGTGCAGT+TGG | 0.471414 | 7_4:-43757705 | None:intergenic |
| CCAGTTCCTTGTGTTCTCCC+CGG | 0.471465 | 7_4:+43758191 | Msa1155830:CDS |
| GTGTCAAGCTTCTGCAGTGC+CGG | 0.476430 | 7_4:-43757942 | None:intergenic |
| AGACAGTCAAGAAGGCGTTC+GGG | 0.476515 | 7_4:-43758910 | None:intergenic |
| GAAACACCTTACAGAGAAAA+GGG | 0.476714 | 7_4:+43758235 | Msa1155830:CDS |
| CGCCAAGGAAAGATGAGAAA+TGG | 0.481731 | 7_4:+43758162 | Msa1155830:CDS |
| ATTCGGACAAAGCTTAAAGT+TGG | 0.482979 | 7_4:+43757596 | Msa1155830:CDS |
| AGCTTATGGATGACACAGAT+TGG | 0.490524 | 7_4:+43759052 | Msa1155830:three_prime_UTR |
| AAGCAACAATGTTGAATGCC+AGG | 0.498483 | 7_4:-43759395 | None:intergenic |
| CTTGGCAATAGAATTTCAGC+TGG | 0.501471 | 7_4:-43758469 | None:intergenic |
| TCTTTATGTAGATAAATCAA+TGG | 0.509070 | 7_4:+43759431 | Msa1155830:three_prime_UTR |
| GACATGTCTGGTGGAGGGAA+AGG | 0.515039 | 7_4:+43757414 | Msa1155830:CDS |
| GAAGGTGAAGGCGAAGGAAA+AGG | 0.518393 | 7_4:-43756986 | None:intergenic |
| CTTCTAGGAGAAGACATGTC+TGG | 0.518863 | 7_4:+43757402 | Msa1155830:CDS |
| CATGTGGAAAAGAGAAATGA+AGG | 0.523280 | 7_4:+43757644 | Msa1155830:CDS |
| TTTAGAAGATGGCACAATTG+TGG | 0.526926 | 7_4:+43757719 | Msa1155830:CDS |
| TGACTTCTCAGAGAGGCCAC+CGG | 0.528368 | 7_4:-43758210 | None:intergenic |
| TCTTTCAGATGATGAAAAGC+AGG | 0.530067 | 7_4:+43757892 | Msa1155830:intron |
| TACGCGCAGCCTCGTTTCGA+AGG | 0.530209 | 7_4:+43758135 | Msa1155830:CDS |
| AGGCCACCGGGGAGAACACA+AGG | 0.530986 | 7_4:-43758197 | None:intergenic |
| AGGAAAAGGTGAAGATTCAC+TGG | 0.533633 | 7_4:-43756972 | None:intergenic |
| GAAGAGAAACATTCTTGTGA+TGG | 0.535798 | 7_4:-43759481 | None:intergenic |
| GGAGAAGACATGTCTGGTGG+AGG | 0.539294 | 7_4:+43757408 | Msa1155830:CDS |
| TGCAAATCAAATTCATAAAG+CGG | 0.539703 | 7_4:+43758262 | Msa1155830:CDS |
| CGGTGGAGAGAGGCTAAACC+TGG | 0.540529 | 7_4:+43757010 | Msa1155830:CDS |
| TTCTAAATATTGTGCAGTTG+GGG | 0.542515 | 7_4:-43757703 | None:intergenic |
| TTAGTCATTCAAAGTCATCA+TGG | 0.545171 | 7_4:+43759016 | Msa1155830:three_prime_UTR |
| TAGGGTTCAATCAACAATGA+AGG | 0.546015 | 7_4:-43758361 | None:intergenic |
| TTGATATAAATATCTGACCT+TGG | 0.549418 | 7_4:-43757915 | None:intergenic |
| TAAAGGAATCATCAATCACT+TGG | 0.551161 | 7_4:-43758487 | None:intergenic |
| ACTGCACAATATTTAGAAGA+TGG | 0.552337 | 7_4:+43757708 | Msa1155830:CDS |
| GTTCAGGATATCTTTGCTTG+AGG | 0.557074 | 7_4:-43759125 | None:intergenic |
| AAGCACTTGATCTAGCAGAC+AGG | 0.561427 | 7_4:+43758953 | Msa1155830:three_prime_UTR |
| AGGTGAGCTTGAAATGATGA+AGG | 0.561510 | 7_4:+43757362 | Msa1155830:intron |
| AAACAATAATTTCTTCAGAG+TGG | 0.562136 | 7_4:+43758829 | Msa1155830:three_prime_UTR |
| CATCTGAACTCGTCCAAACT+CGG | 0.567856 | 7_4:-43756904 | None:intergenic |
| TAATTTCTTCAGAGTGGACG+AGG | 0.573453 | 7_4:+43758835 | Msa1155830:three_prime_UTR |
| TCTATGGATCATCATTTAGT+CGG | 0.577290 | 7_4:+43756833 | Msa1155830:CDS |
| TTCACCTTCTCGGTGGAGAG+AGG | 0.578830 | 7_4:+43757000 | Msa1155830:CDS |
| TATGGATGACACAGATTGGA+AGG | 0.579189 | 7_4:+43759056 | Msa1155830:three_prime_UTR |
| ATTACCGTAGAGATTGGTAA+TGG | 0.583340 | 7_4:-43757466 | None:intergenic |
| ATTCCTAACCTAGAAAGACC+AGG | 0.583658 | 7_4:-43757028 | None:intergenic |
| CTTCGCCTTCACCTTCTCGG+TGG | 0.583766 | 7_4:+43756993 | Msa1155830:CDS |
| TCTCTCCACCGAGAAGGTGA+AGG | 0.584475 | 7_4:-43756998 | None:intergenic |
| GTTTGGTGAAAATTCTAATG+TGG | 0.584883 | 7_4:+43756793 | Msa1155830:CDS |
| TCAAATTCATAAAGCGGCAA+TGG | 0.590114 | 7_4:+43758268 | Msa1155830:CDS |
| GTGGCCTCTCTGAGAAGTCA+AGG | 0.590461 | 7_4:+43758213 | Msa1155830:CDS |
| TTAATTTGAGACAGTCAAGA+AGG | 0.590857 | 7_4:-43758918 | None:intergenic |
| AATGCCATTACCAATCTCTA+CGG | 0.606376 | 7_4:+43757462 | Msa1155830:CDS |
| CACCGAGAAGGTGAAGGCGA+AGG | 0.608074 | 7_4:-43756992 | None:intergenic |
| AACGAGGCTGCGCGTAAACG+AGG | 0.608608 | 7_4:-43758128 | None:intergenic |
| AGATGATGAAAAGCAGGCCA+AGG | 0.612297 | 7_4:+43757898 | Msa1155830:intron |
| TGATGATCCATAGAAGGTGA+AGG | 0.612437 | 7_4:-43756824 | None:intergenic |
| GTTCCTTGTGTTCTCCCCGG+TGG | 0.614320 | 7_4:+43758194 | Msa1155830:CDS |
| GAGAAGACATGTCTGGTGGA+GGG | 0.615927 | 7_4:+43757409 | Msa1155830:CDS |
| TTAGCCTCTCTCCACCGAGA+AGG | 0.616988 | 7_4:-43757004 | None:intergenic |
| TGGCGCAATCCTTCGAAACG+AGG | 0.623989 | 7_4:-43758144 | None:intergenic |
| ATATATAGATGATCTTCCAC+AGG | 0.626973 | 7_4:+43758334 | Msa1155830:CDS |
| CGTTTCGAAGGATTGCGCCA+AGG | 0.628100 | 7_4:+43758147 | Msa1155830:CDS |
| AGAAGATGGCACAATTGTGG+AGG | 0.635109 | 7_4:+43757722 | Msa1155830:CDS |
| CAACAATGAAGGCTAACCTG+TGG | 0.637527 | 7_4:-43758350 | None:intergenic |
| AGCACTTGATCTAGCAGACA+GGG | 0.643640 | 7_4:+43758954 | Msa1155830:three_prime_UTR |
| CTAGGAGAAGACATGTCTGG+TGG | 0.645913 | 7_4:+43757405 | Msa1155830:CDS |
| CAAGGAAAGATGAGAAATGG+TGG | 0.660539 | 7_4:+43758165 | Msa1155830:CDS |
| TTGAATCATCGATGTACACA+TGG | 0.667957 | 7_4:+43758977 | Msa1155830:three_prime_UTR |
| TTACCAATATATGTATACTG+TGG | 0.673146 | 7_4:+43758876 | Msa1155830:three_prime_UTR |
| GTTTCCTTGACTTCTCAGAG+AGG | 0.693317 | 7_4:-43758217 | None:intergenic |
| ATGCAAGATCCAATACAACA+AGG | 0.709340 | 7_4:+43759170 | Msa1155830:three_prime_UTR |
| ACTTCTCAGAGAGGCCACCG+GGG | 0.720694 | 7_4:-43758208 | None:intergenic |
| AGCCTGAGAAGAAAACCATG+TGG | 0.741104 | 7_4:+43757628 | Msa1155830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAATTGTTCATATTTAAT+AGG | - | chr7_4:43757192-43757211 | None:intergenic | 15.0% |
| !! | CATAGATATAGAAAAACAAA+AGG | - | chr7_4:43756586-43756605 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTTTCTATATCTA+TGG | + | chr7_4:43756584-43756603 | Msa1155830:five_prime_UTR | 20.0% |
| !! | TTTCATCTTAGAATTTAGTT+TGG | + | chr7_4:43757141-43757160 | Msa1155830:intron | 20.0% |
| !!! | AGTTTAGTTTTGTAAACATT+AGG | + | chr7_4:43757342-43757361 | Msa1155830:intron | 20.0% |
| !! | ATAGTATGATAAAAAAAGAG+AGG | + | chr7_4:43757508-43757527 | Msa1155830:intron | 20.0% |
| !! | TAATTGAACATGTTTGTATT+TGG | + | chr7_4:43757555-43757574 | Msa1155830:intron | 20.0% |
| !! | TCTATAAAAAGAACATCATT+TGG | - | chr7_4:43757761-43757780 | None:intergenic | 20.0% |
| !! | AGATATTTATATCAATCTTC+CGG | + | chr7_4:43757923-43757942 | Msa1155830:CDS | 20.0% |
| !! | TGCAAGAATATTACTATTTA+TGG | - | chr7_4:43758294-43758313 | None:intergenic | 20.0% |
| !!! | TTGAAGAACATTTCTTTTTT+CGG | + | chr7_4:43758387-43758406 | Msa1155830:three_prime_UTR | 20.0% |
| !! | TCTTTATGTAGATAAATCAA+TGG | + | chr7_4:43759431-43759450 | Msa1155830:three_prime_UTR | 20.0% |
| ! | TAGTGAACAAACATAATTTG+TGG | + | chr7_4:43756716-43756735 | Msa1155830:intron | 25.0% |
| !! | ATGGATAAATCATTCAAGTT+TGG | + | chr7_4:43756776-43756795 | Msa1155830:CDS | 25.0% |
| ! | AACAATTCAATCTAGACAAT+AGG | + | chr7_4:43757202-43757221 | Msa1155830:intron | 25.0% |
| ! | ACAATTCAATCTAGACAATA+GGG | + | chr7_4:43757203-43757222 | Msa1155830:intron | 25.0% |
| ! | TCGAAGTTATAGTTATCATT+TGG | - | chr7_4:43757839-43757858 | None:intergenic | 25.0% |
| ! | TTGATATAAATATCTGACCT+TGG | - | chr7_4:43757918-43757937 | None:intergenic | 25.0% |
| !! | GGAAATATTAGATTCTTTTG+AGG | + | chr7_4:43758064-43758083 | Msa1155830:intron | 25.0% |
| ! | TGCAAATCAAATTCATAAAG+CGG | + | chr7_4:43758262-43758281 | Msa1155830:CDS | 25.0% |
| ! | AGATCATCTATATATGTTTC+TGG | - | chr7_4:43758329-43758348 | None:intergenic | 25.0% |
| ! | AGAAATGTTCTTCAACAATA+GGG | - | chr7_4:43758382-43758401 | None:intergenic | 25.0% |
| ! | AAGAAATGTTCTTCAACAAT+AGG | - | chr7_4:43758383-43758402 | None:intergenic | 25.0% |
| !! | CAAATTTCATAAGCCTTTTA+TGG | + | chr7_4:43758549-43758568 | Msa1155830:three_prime_UTR | 25.0% |
| ! | AAACAATAATTTCTTCAGAG+TGG | + | chr7_4:43758829-43758848 | Msa1155830:three_prime_UTR | 25.0% |
| ! | TTACCAATATATGTATACTG+TGG | + | chr7_4:43758876-43758895 | Msa1155830:three_prime_UTR | 25.0% |
| ! | AATTGGAGACATTTCTATTT+AGG | + | chr7_4:43759292-43759311 | Msa1155830:intron | 25.0% |
| ! | GTTTACAAAAGACTGTTAAA+TGG | - | chr7_4:43759506-43759525 | None:intergenic | 25.0% |
| !! | TCTTTTGTAAACCTTAGATT+TGG | + | chr7_4:43759514-43759533 | Msa1155830:three_prime_UTR | 25.0% |
| ! | GTTGAAATATAAAGCATAAC+AGG | + | chr7_4:43759642-43759661 | Msa1155830:three_prime_UTR | 25.0% |
| CACATATTCTTGAACTAAGA+TGG | + | chr7_4:43756757-43756776 | Msa1155830:exon | 30.0% | |
| ! | GTTTGGTGAAAATTCTAATG+TGG | + | chr7_4:43756793-43756812 | Msa1155830:CDS | 30.0% |
| ACTAAATGATGATCCATAGA+AGG | - | chr7_4:43756833-43756852 | None:intergenic | 30.0% | |
| TCTATGGATCATCATTTAGT+CGG | + | chr7_4:43756833-43756852 | Msa1155830:CDS | 30.0% | |
| TCATCTTAGAATTGTGACTT+GGG | - | chr7_4:43757314-43757333 | None:intergenic | 30.0% | |
| TTCTAAATATTGTGCAGTTG+GGG | - | chr7_4:43757706-43757725 | None:intergenic | 30.0% | |
| CTTCTAAATATTGTGCAGTT+GGG | - | chr7_4:43757707-43757726 | None:intergenic | 30.0% | |
| TCTTCTAAATATTGTGCAGT+TGG | - | chr7_4:43757708-43757727 | None:intergenic | 30.0% | |
| ACTGCACAATATTTAGAAGA+TGG | + | chr7_4:43757708-43757727 | Msa1155830:CDS | 30.0% | |
| TTGCATGAAAGAAGAAAATG+AGG | - | chr7_4:43757988-43758007 | None:intergenic | 30.0% | |
| ! | AACATGAAAATGTTGTTTGC+AGG | + | chr7_4:43758043-43758062 | Msa1155830:intron | 30.0% |
| ATATATAGATGATCTTCCAC+AGG | + | chr7_4:43758334-43758353 | Msa1155830:CDS | 30.0% | |
| TAAAGGAATCATCAATCACT+TGG | - | chr7_4:43758490-43758509 | None:intergenic | 30.0% | |
| !! | CTATTATTGGCTTCCATAAA+AGG | - | chr7_4:43758565-43758584 | None:intergenic | 30.0% |
| CGACGATATAATTCCATATA+AGG | + | chr7_4:43758607-43758626 | Msa1155830:three_prime_UTR | 30.0% | |
| TGTCCACAGTATACATATAT+TGG | - | chr7_4:43758882-43758901 | None:intergenic | 30.0% | |
| ! | TTAATTTGAGACAGTCAAGA+AGG | - | chr7_4:43758921-43758940 | None:intergenic | 30.0% |
| TTAGTCATTCAAAGTCATCA+TGG | + | chr7_4:43759016-43759035 | Msa1155830:three_prime_UTR | 30.0% | |
| GAAAGAAGTAAAAGAGCTTA+TGG | + | chr7_4:43759038-43759057 | Msa1155830:three_prime_UTR | 30.0% | |
| AAAGAAGTTTGTGAAAGTTC+AGG | - | chr7_4:43759144-43759163 | None:intergenic | 30.0% | |
| TGAACTTTCACAAACTTCTT+TGG | + | chr7_4:43759143-43759162 | Msa1155830:three_prime_UTR | 30.0% | |
| ! | CTAAACTTACCTTGTTGTAT+TGG | - | chr7_4:43759182-43759201 | None:intergenic | 30.0% |
| ! | GAATGAAAATCATCTTTTGC+AGG | + | chr7_4:43759326-43759345 | Msa1155830:intron | 30.0% |
| ! | AGAAAGCTATTCAAGAGTTT+TGG | + | chr7_4:43759368-43759387 | Msa1155830:three_prime_UTR | 30.0% |
| TCTACATTCTTCCAAATCTA+AGG | - | chr7_4:43759528-43759547 | None:intergenic | 30.0% | |
| AGATTGAGTGGTGATTCTTT+CGG | + | chr7_4:43756875-43756894 | Msa1155830:CDS | 35.0% | |
| ! | ACTTGATGACAATGATCTCT+TGG | + | chr7_4:43757081-43757100 | Msa1155830:CDS | 35.0% |
| AATAAGACTATGCCATCTAG+TGG | - | chr7_4:43757249-43757268 | None:intergenic | 35.0% | |
| CATCTTAGAATTGTGACTTG+GGG | - | chr7_4:43757313-43757332 | None:intergenic | 35.0% | |
| GTCATCTTAGAATTGTGACT+TGG | - | chr7_4:43757315-43757334 | None:intergenic | 35.0% | |
| AATGCCATTACCAATCTCTA+CGG | + | chr7_4:43757462-43757481 | Msa1155830:CDS | 35.0% | |
| ATTACCGTAGAGATTGGTAA+TGG | - | chr7_4:43757469-43757488 | None:intergenic | 35.0% | |
| GAAAGAATTACCGTAGAGAT+TGG | - | chr7_4:43757475-43757494 | None:intergenic | 35.0% | |
| ATTCGGACAAAGCTTAAAGT+TGG | + | chr7_4:43757596-43757615 | Msa1155830:CDS | 35.0% | |
| ! | CTTCATTTCTCTTTTCCACA+TGG | - | chr7_4:43757646-43757665 | None:intergenic | 35.0% |
| CATGTGGAAAAGAGAAATGA+AGG | + | chr7_4:43757644-43757663 | Msa1155830:CDS | 35.0% | |
| TTTAGAAGATGGCACAATTG+TGG | + | chr7_4:43757719-43757738 | Msa1155830:CDS | 35.0% | |
| ! | ATAGTTATCATTTGGCTCGA+TGG | - | chr7_4:43757831-43757850 | None:intergenic | 35.0% |
| CCATATTAGAGATCACAAAC+AGG | - | chr7_4:43757867-43757886 | None:intergenic | 35.0% | |
| CCTGTTTGTGATCTCTAATA+TGG | + | chr7_4:43757864-43757883 | Msa1155830:intron | 35.0% | |
| TCTTTCAGATGATGAAAAGC+AGG | + | chr7_4:43757892-43757911 | Msa1155830:intron | 35.0% | |
| !! | CTTTTGAGGATACTGAATTC+TGG | + | chr7_4:43758078-43758097 | Msa1155830:CDS | 35.0% |
| GAAACACCTTACAGAGAAAA+GGG | + | chr7_4:43758235-43758254 | Msa1155830:CDS | 35.0% | |
| TCAAATTCATAAAGCGGCAA+TGG | + | chr7_4:43758268-43758287 | Msa1155830:CDS | 35.0% | |
| TAGGGTTCAATCAACAATGA+AGG | - | chr7_4:43758364-43758383 | None:intergenic | 35.0% | |
| CCTTATAGGGTCACATTTAA+AGG | - | chr7_4:43758507-43758526 | None:intergenic | 35.0% | |
| CCTTTAAATGTGACCCTATA+AGG | + | chr7_4:43758504-43758523 | Msa1155830:three_prime_UTR | 35.0% | |
| TCCAAGACATTTGCCTTATA+GGG | - | chr7_4:43758520-43758539 | None:intergenic | 35.0% | |
| TTCCAAGACATTTGCCTTAT+AGG | - | chr7_4:43758521-43758540 | None:intergenic | 35.0% | |
| TTGAATCATCGATGTACACA+TGG | + | chr7_4:43758977-43758996 | Msa1155830:three_prime_UTR | 35.0% | |
| ATGCAAGATCCAATACAACA+AGG | + | chr7_4:43759170-43759189 | Msa1155830:three_prime_UTR | 35.0% | |
| ! | TTCATTCCATATGCTAGCTT+AGG | - | chr7_4:43759273-43759292 | None:intergenic | 35.0% |
| GCTAGCATATGGAATGAAAT+TGG | + | chr7_4:43759275-43759294 | Msa1155830:intron | 35.0% | |
| ! | AAATCATCTTTTGCAGGATG+TGG | + | chr7_4:43759332-43759351 | Msa1155830:intron | 35.0% |
| ! | AATCATCTTTTGCAGGATGT+GGG | + | chr7_4:43759333-43759352 | Msa1155830:intron | 35.0% |
| !!! | AGCTATTCAAGAGTTTTGGA+AGG | + | chr7_4:43759372-43759391 | Msa1155830:three_prime_UTR | 35.0% |
| GAAGAGAAACATTCTTGTGA+TGG | - | chr7_4:43759484-43759503 | None:intergenic | 35.0% | |
| GAATGTAGACAGTTAGTAGA+TGG | + | chr7_4:43759539-43759558 | Msa1155830:three_prime_UTR | 35.0% | |
| GTATCATCCTTCACCTTCTA+TGG | + | chr7_4:43756817-43756836 | Msa1155830:CDS | 40.0% | |
| TGATGATCCATAGAAGGTGA+AGG | - | chr7_4:43756827-43756846 | None:intergenic | 40.0% | |
| CCACTCAATCTAGAAAAAGC+AGG | - | chr7_4:43756866-43756885 | None:intergenic | 40.0% | |
| !!! | CCTGCTTTTTCTAGATTGAG+TGG | + | chr7_4:43756863-43756882 | Msa1155830:CDS | 40.0% |
| AGGAAAAGGTGAAGATTCAC+TGG | - | chr7_4:43756975-43756994 | None:intergenic | 40.0% | |
| ! | AAACCTGGTCTTTCTAGGTT+AGG | + | chr7_4:43757025-43757044 | Msa1155830:CDS | 40.0% |
| ATTCCTAACCTAGAAAGACC+AGG | - | chr7_4:43757031-43757050 | None:intergenic | 40.0% | |
| GACAATGATCTCTTGGATTC+AGG | + | chr7_4:43757088-43757107 | Msa1155830:CDS | 40.0% | |
| AGGTGAGCTTGAAATGATGA+AGG | + | chr7_4:43757362-43757381 | Msa1155830:intron | 40.0% | |
| AAATTCGCGAAGCTTCTTCT+AGG | + | chr7_4:43757387-43757406 | Msa1155830:CDS | 40.0% | |
| AATTCTGCAGCGACAGTATT+CGG | + | chr7_4:43757579-43757598 | Msa1155830:intron | 40.0% | |
| ! | TTCCACATGGTTTTCTTCTC+AGG | - | chr7_4:43757633-43757652 | None:intergenic | 40.0% |
| CACCATTTCTCATCTTTCCT+TGG | - | chr7_4:43758167-43758186 | None:intergenic | 40.0% | |
| CAAGGAAAGATGAGAAATGG+TGG | + | chr7_4:43758165-43758184 | Msa1155830:CDS | 40.0% | |
| GGAAACACCTTACAGAGAAA+AGG | + | chr7_4:43758234-43758253 | Msa1155830:CDS | 40.0% | |
| ! | CACAATCCCTTTTCTCTGTA+AGG | - | chr7_4:43758244-43758263 | None:intergenic | 40.0% |
| CTTGGCAATAGAATTTCAGC+TGG | - | chr7_4:43758472-43758491 | None:intergenic | 40.0% | |
| ACCCTATAAGGCAAATGTCT+TGG | + | chr7_4:43758516-43758535 | Msa1155830:three_prime_UTR | 40.0% | |
| CAAGACTCAGCTGCTATTAT+TGG | - | chr7_4:43758578-43758597 | None:intergenic | 40.0% | |
| ! | CGTGCTACTAGTACCTTATA+TGG | - | chr7_4:43758623-43758642 | None:intergenic | 40.0% |
| TAATTTCTTCAGAGTGGACG+AGG | + | chr7_4:43758835-43758854 | Msa1155830:three_prime_UTR | 40.0% | |
| AGCTTATGGATGACACAGAT+TGG | + | chr7_4:43759052-43759071 | Msa1155830:three_prime_UTR | 40.0% | |
| TATGGATGACACAGATTGGA+AGG | + | chr7_4:43759056-43759075 | Msa1155830:three_prime_UTR | 40.0% | |
| GTTCAGGATATCTTTGCTTG+AGG | - | chr7_4:43759128-43759147 | None:intergenic | 40.0% | |
| ! | ATCATCTTTTGCAGGATGTG+GGG | + | chr7_4:43759334-43759353 | Msa1155830:intron | 40.0% |
| AAGCAACAATGTTGAATGCC+AGG | - | chr7_4:43759398-43759417 | None:intergenic | 40.0% | |
| TGGCATTCAACATTGTTGCT+TGG | + | chr7_4:43759397-43759416 | Msa1155830:three_prime_UTR | 40.0% | |
| CATCTGAACTCGTCCAAACT+CGG | - | chr7_4:43756907-43756926 | None:intergenic | 45.0% | |
| ! | AGGCTAAACCTGGTCTTTCT+AGG | + | chr7_4:43757020-43757039 | Msa1155830:CDS | 45.0% |
| !! | CATAGTCTTATTCCTCCCAG+CGG | + | chr7_4:43757257-43757276 | Msa1155830:intron | 45.0% |
| CTAGAAACAATCTCTCCGCT+GGG | - | chr7_4:43757275-43757294 | None:intergenic | 45.0% | |
| ! | CTTCTAGGAGAAGACATGTC+TGG | + | chr7_4:43757402-43757421 | Msa1155830:CDS | 45.0% |
| ! | GTTTTCTTCTCAGGCTTCAG+CGG | - | chr7_4:43757624-43757643 | None:intergenic | 45.0% |
| AGCCTGAGAAGAAAACCATG+TGG | + | chr7_4:43757628-43757647 | Msa1155830:CDS | 45.0% | |
| AGAAGATGGCACAATTGTGG+AGG | + | chr7_4:43757722-43757741 | Msa1155830:CDS | 45.0% | |
| ! | ATCATTTGGCTCGATGGTGA+AGG | - | chr7_4:43757825-43757844 | None:intergenic | 45.0% |
| AGATGATGAAAAGCAGGCCA+AGG | + | chr7_4:43757898-43757917 | Msa1155830:intron | 45.0% | |
| CGCCAAGGAAAGATGAGAAA+TGG | + | chr7_4:43758162-43758181 | Msa1155830:CDS | 45.0% | |
| GTTTCCTTGACTTCTCAGAG+AGG | - | chr7_4:43758220-43758239 | None:intergenic | 45.0% | |
| CAACAATGAAGGCTAACCTG+TGG | - | chr7_4:43758353-43758372 | None:intergenic | 45.0% | |
| AAGCACTTGATCTAGCAGAC+AGG | + | chr7_4:43758953-43758972 | Msa1155830:three_prime_UTR | 45.0% | |
| AGCACTTGATCTAGCAGACA+GGG | + | chr7_4:43758954-43758973 | Msa1155830:three_prime_UTR | 45.0% | |
| TCCAGTCCTAAGCTAGCATA+TGG | + | chr7_4:43759264-43759283 | Msa1155830:intron | 45.0% | |
| ! | TCCATATGCTAGCTTAGGAC+TGG | - | chr7_4:43759268-43759287 | None:intergenic | 45.0% |
| !!! | TTCAAGAGTTTTGGAAGGCC+TGG | + | chr7_4:43759377-43759396 | Msa1155830:three_prime_UTR | 45.0% |
| !!! | ATTTTTATAACTAATTAAAA+GGG | - | chr7_4:43758681-43758700 | None:intergenic | 5.0% |
| !!! | AATTTTTATAACTAATTAAA+AGG | - | chr7_4:43758682-43758701 | None:intergenic | 5.0% |
| CTTTCGGATACTGCCGAGTT+TGG | + | chr7_4:43756891-43756910 | Msa1155830:CDS | 50.0% | |
| GAAGGTGAAGGCGAAGGAAA+AGG | - | chr7_4:43756989-43757008 | None:intergenic | 50.0% | |
| TTCCTTCGCCTTCACCTTCT+CGG | + | chr7_4:43756990-43757009 | Msa1155830:CDS | 50.0% | |
| TAGTGGAACCTTCGCGCATT+AGG | - | chr7_4:43757232-43757251 | None:intergenic | 50.0% | |
| CCTAGAAACAATCTCTCCGC+TGG | - | chr7_4:43757276-43757295 | None:intergenic | 50.0% | |
| ! | CCAGCGGAGAGATTGTTTCT+AGG | + | chr7_4:43757273-43757292 | Msa1155830:intron | 50.0% |
| CTAGGAGAAGACATGTCTGG+TGG | + | chr7_4:43757405-43757424 | Msa1155830:CDS | 50.0% | |
| GAGAAGACATGTCTGGTGGA+GGG | + | chr7_4:43757409-43757428 | Msa1155830:CDS | 50.0% | |
| CAGAGTGGACGAGGAAATCT+AGG | + | chr7_4:43758844-43758863 | Msa1155830:three_prime_UTR | 50.0% | |
| !! | AGACAGTCAAGAAGGCGTTC+GGG | - | chr7_4:43758913-43758932 | None:intergenic | 50.0% |
| !! | GAGACAGTCAAGAAGGCGTT+CGG | - | chr7_4:43758914-43758933 | None:intergenic | 50.0% |
| TCTCTCCACCGAGAAGGTGA+AGG | - | chr7_4:43757001-43757020 | None:intergenic | 55.0% | |
| TTCACCTTCTCGGTGGAGAG+AGG | + | chr7_4:43757000-43757019 | Msa1155830:CDS | 55.0% | |
| TTAGCCTCTCTCCACCGAGA+AGG | - | chr7_4:43757007-43757026 | None:intergenic | 55.0% | |
| TGCGCGAAGGTTCCACTAGA+TGG | + | chr7_4:43757234-43757253 | Msa1155830:intron | 55.0% | |
| GAAACAATCTCTCCGCTGGG+AGG | - | chr7_4:43757272-43757291 | None:intergenic | 55.0% | |
| GGAGAAGACATGTCTGGTGG+AGG | + | chr7_4:43757408-43757427 | Msa1155830:CDS | 55.0% | |
| GACATGTCTGGTGGAGGGAA+AGG | + | chr7_4:43757414-43757433 | Msa1155830:CDS | 55.0% | |
| GTGTCAAGCTTCTGCAGTGC+CGG | - | chr7_4:43757945-43757964 | None:intergenic | 55.0% | |
| TGGCGCAATCCTTCGAAACG+AGG | - | chr7_4:43758147-43758166 | None:intergenic | 55.0% | |
| CGTTTCGAAGGATTGCGCCA+AGG | + | chr7_4:43758147-43758166 | Msa1155830:CDS | 55.0% | |
| CCAGTTCCTTGTGTTCTCCC+CGG | + | chr7_4:43758191-43758210 | Msa1155830:CDS | 55.0% | |
| TGACTTCTCAGAGAGGCCAC+CGG | - | chr7_4:43758213-43758232 | None:intergenic | 55.0% | |
| ! | GTGGCCTCTCTGAGAAGTCA+AGG | + | chr7_4:43758213-43758232 | Msa1155830:CDS | 55.0% |
| CACCGAGAAGGTGAAGGCGA+AGG | - | chr7_4:43756995-43757014 | None:intergenic | 60.0% | |
| CTTCGCCTTCACCTTCTCGG+TGG | + | chr7_4:43756993-43757012 | Msa1155830:CDS | 60.0% | |
| CGGTGGAGAGAGGCTAAACC+TGG | + | chr7_4:43757010-43757029 | Msa1155830:CDS | 60.0% | |
| TAGGGCGACCTAATGCGCGA+AGG | + | chr7_4:43757221-43757240 | Msa1155830:intron | 60.0% | |
| AACGAGGCTGCGCGTAAACG+AGG | - | chr7_4:43758131-43758150 | None:intergenic | 60.0% | |
| TACGCGCAGCCTCGTTTCGA+AGG | + | chr7_4:43758135-43758154 | Msa1155830:CDS | 60.0% | |
| CCGGGGAGAACACAAGGAAC+TGG | - | chr7_4:43758194-43758213 | None:intergenic | 60.0% | |
| GTTCCTTGTGTTCTCCCCGG+TGG | + | chr7_4:43758194-43758213 | Msa1155830:CDS | 60.0% | |
| ACTTCTCAGAGAGGCCACCG+GGG | - | chr7_4:43758211-43758230 | None:intergenic | 60.0% | |
| GACTTCTCAGAGAGGCCACC+GGG | - | chr7_4:43758212-43758231 | None:intergenic | 60.0% | |
| AGGCCACCGGGGAGAACACA+AGG | - | chr7_4:43758200-43758219 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 43756552 | 43759696 | 43756552 | ID=Msa1155830;Name=Msa1155830 |
| chr7_4 | mRNA | 43756552 | 43759696 | 43756552 | ID=Msa1155830-mRNA-1;Parent=Msa1155830;Name=Msa1155830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=203|1|1|1|0.83|0.57|7|1167|330 |
| chr7_4 | exon | 43756552 | 43756717 | 43756552 | ID=Msa1155830-mRNA-1:exon:11073;Parent=Msa1155830-mRNA-1 |
| chr7_4 | exon | 43756739 | 43757109 | 43756739 | ID=Msa1155830-mRNA-1:exon:11074;Parent=Msa1155830-mRNA-1 |
| chr7_4 | exon | 43757364 | 43757483 | 43757364 | ID=Msa1155830-mRNA-1:exon:11075;Parent=Msa1155830-mRNA-1 |
| chr7_4 | exon | 43757589 | 43757743 | 43757589 | ID=Msa1155830-mRNA-1:exon:11076;Parent=Msa1155830-mRNA-1 |
| chr7_4 | exon | 43757900 | 43757974 | 43757900 | ID=Msa1155830-mRNA-1:exon:11077;Parent=Msa1155830-mRNA-1 |
| chr7_4 | exon | 43758065 | 43759191 | 43758065 | ID=Msa1155830-mRNA-1:exon:11078;Parent=Msa1155830-mRNA-1 |
| chr7_4 | exon | 43759348 | 43759696 | 43759348 | ID=Msa1155830-mRNA-1:exon:11079;Parent=Msa1155830-mRNA-1 |
| chr7_4 | five_prime_UTR | 43756552 | 43756717 | 43756552 | ID=Msa1155830-mRNA-1:five_prime_utr;Parent=Msa1155830-mRNA-1 |
| chr7_4 | five_prime_UTR | 43756739 | 43756775 | 43756739 | ID=Msa1155830-mRNA-1:five_prime_utr;Parent=Msa1155830-mRNA-1 |
| chr7_4 | CDS | 43756776 | 43757109 | 43756776 | ID=Msa1155830-mRNA-1:cds;Parent=Msa1155830-mRNA-1 |
| chr7_4 | CDS | 43757364 | 43757483 | 43757364 | ID=Msa1155830-mRNA-1:cds;Parent=Msa1155830-mRNA-1 |
| chr7_4 | CDS | 43757589 | 43757743 | 43757589 | ID=Msa1155830-mRNA-1:cds;Parent=Msa1155830-mRNA-1 |
| chr7_4 | CDS | 43757900 | 43757974 | 43757900 | ID=Msa1155830-mRNA-1:cds;Parent=Msa1155830-mRNA-1 |
| chr7_4 | CDS | 43758065 | 43758373 | 43758065 | ID=Msa1155830-mRNA-1:cds;Parent=Msa1155830-mRNA-1 |
| chr7_4 | three_prime_UTR | 43758374 | 43759191 | 43758374 | ID=Msa1155830-mRNA-1:three_prime_utr;Parent=Msa1155830-mRNA-1 |
| chr7_4 | three_prime_UTR | 43759348 | 43759696 | 43759348 | ID=Msa1155830-mRNA-1:three_prime_utr;Parent=Msa1155830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
