Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028580 | XP_003590588.1 | 97.137 | 489 | 10 | 2 | 1 | 489 | 1 | 485 | 0.0 | 972 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028580 | sp|Q8W4K5|VAB_ARATH | 62.880 | 493 | 162 | 11 | 7 | 489 | 11 | 492 | 2.65e-165 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0028580 | 0.804316 | 2.289992e-49 | -8.615850e-47 |
| Msa0017510 | Msa0028580 | 0.801436 | 9.012900e-49 | -8.615850e-47 |
| Msa0028420 | Msa0028580 | 0.802649 | 5.075267e-49 | -8.615850e-47 |
| Msa0028580 | Msa0076250 | 0.866765 | 2.243741e-65 | -8.615850e-47 |
| Msa0028580 | Msa0081050 | 0.819474 | 1.139531e-52 | -8.615850e-47 |
| Msa0028580 | Msa0089630 | 0.811815 | 5.797423e-51 | -8.615850e-47 |
| Msa0028580 | Msa0124280 | 0.897314 | 1.585766e-76 | -8.615850e-47 |
| Msa0028580 | Msa0131900 | 0.816375 | 5.711976e-52 | -8.615850e-47 |
| Msa0028580 | Msa0157290 | 0.802710 | 4.931013e-49 | -8.615850e-47 |
| Msa0028580 | Msa0225860 | 0.821751 | 3.418484e-53 | -8.615850e-47 |
| Msa0028580 | Msa0230740 | 0.807477 | 4.959555e-50 | -8.615850e-47 |
| Msa0028580 | Msa0261340 | 0.800818 | 1.205748e-48 | -8.615850e-47 |
| Msa0028580 | Msa0380620 | 0.800063 | 1.718176e-48 | -8.615850e-47 |
| Msa0028580 | Msa0387510 | 0.806341 | 8.623011e-50 | -8.615850e-47 |
| Msa0028580 | Msa0417880 | 0.808914 | 2.450147e-50 | -8.615850e-47 |
| Msa0028580 | Msa0510980 | 0.803215 | 3.877378e-49 | -8.615850e-47 |
| Msa0028580 | Msa0569200 | 0.807770 | 4.296690e-50 | -8.615850e-47 |
| Msa0028580 | Msa0574890 | 0.807307 | 5.387624e-50 | -8.615850e-47 |
| Msa0028580 | Msa0580370 | 0.801317 | 9.532211e-49 | -8.615850e-47 |
| Msa0028580 | Msa0662240 | 0.804363 | 2.238901e-49 | -8.615850e-47 |
| Msa0028580 | Msa0683570 | 0.806762 | 7.027574e-50 | -8.615850e-47 |
| Msa0028580 | Msa0691980 | 0.808241 | 3.412165e-50 | -8.615850e-47 |
| Msa0028580 | Msa0754520 | 0.814616 | 1.407306e-51 | -8.615850e-47 |
| Msa0028580 | Msa0778590 | 0.801816 | 7.533469e-49 | -8.615850e-47 |
| Msa0028580 | Msa0795870 | 0.806704 | 7.229363e-50 | -8.615850e-47 |
| Msa0028580 | Msa0815960 | 0.812372 | 4.382408e-51 | -8.615850e-47 |
| Msa0028580 | Msa0833220 | 0.817665 | 2.930901e-52 | -8.615850e-47 |
| Msa0028580 | Msa0833650 | 0.807014 | 6.214740e-50 | -8.615850e-47 |
| Msa0028580 | Msa0861600 | 0.803628 | 3.183639e-49 | -8.615850e-47 |
| Msa0028580 | Msa0936410 | 0.800473 | 1.417543e-48 | -8.615850e-47 |
| Msa0028580 | Msa1019430 | 0.800946 | 1.135051e-48 | -8.615850e-47 |
| Msa0028580 | Msa1019470 | 0.806490 | 8.022172e-50 | -8.615850e-47 |
| Msa0028580 | Msa1132840 | 0.801825 | 7.500180e-49 | -8.615850e-47 |
| Msa0028580 | Msa1155830 | 0.807080 | 6.018531e-50 | -8.615850e-47 |
| Msa0028580 | Msa1209460 | 0.811107 | 8.259283e-51 | -8.615850e-47 |
| Msa0028580 | Msa1223470 | 0.810748 | 9.879413e-51 | -8.615850e-47 |
| Msa0028580 | Msa1346280 | 0.806012 | 1.011531e-49 | -8.615850e-47 |
| Msa0028580 | Msa1374550 | 0.801111 | 1.050374e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028580 | MtrunA17_Chr1g0185201 | 97.137 | 489 | 10 | 2 | 1 | 489 | 1 | 485 | 0.0 | 972 |
| Msa0028580 | MtrunA17_Chr7g0260211 | 76.939 | 490 | 91 | 11 | 1 | 486 | 1 | 472 | 0.0 | 648 |
| Msa0028580 | MtrunA17_Chr1g0166381 | 65.385 | 468 | 143 | 7 | 26 | 487 | 13 | 467 | 2.36e-158 | 457 |
| Msa0028580 | MtrunA17_Chr1g0204831 | 61.505 | 465 | 148 | 8 | 24 | 487 | 20 | 454 | 2.58e-136 | 401 |
| Msa0028580 | MtrunA17_Chr3g0140081 | 39.062 | 448 | 190 | 12 | 33 | 478 | 1 | 367 | 6.40e-66 | 217 |
| Msa0028580 | MtrunA17_Chr4g0019631 | 48.077 | 260 | 100 | 6 | 188 | 438 | 64 | 297 | 1.40e-52 | 179 |
| Msa0028580 | MtrunA17_Chr5g0399391 | 37.748 | 302 | 147 | 7 | 189 | 481 | 113 | 382 | 3.16e-44 | 160 |
| Msa0028580 | MtrunA17_Chr4g0073191 | 32.082 | 293 | 157 | 7 | 189 | 479 | 146 | 398 | 1.95e-14 | 75.1 |
| Msa0028580 | MtrunA17_Chr7g0260231 | 68.293 | 41 | 11 | 1 | 448 | 486 | 7 | 47 | 1.25e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028580 | AT3G22810.1 | 63.466 | 479 | 154 | 10 | 14 | 486 | 6 | 469 | 0.0 | 519 |
| Msa0028580 | AT4G14740.1 | 63.482 | 471 | 152 | 10 | 24 | 486 | 16 | 474 | 6.29e-174 | 498 |
| Msa0028580 | AT4G14740.2 | 63.482 | 471 | 152 | 10 | 24 | 486 | 16 | 474 | 6.29e-174 | 498 |
| Msa0028580 | AT3G63300.1 | 62.880 | 493 | 162 | 11 | 7 | 489 | 11 | 492 | 2.70e-166 | 479 |
| Msa0028580 | AT5G43870.1 | 59.283 | 474 | 151 | 11 | 19 | 486 | 15 | 452 | 1.98e-149 | 434 |
| Msa0028580 | AT3G22810.2 | 63.017 | 411 | 131 | 10 | 14 | 418 | 6 | 401 | 6.45e-141 | 411 |
| Msa0028580 | AT3G22810.3 | 66.867 | 332 | 106 | 3 | 156 | 486 | 3 | 331 | 6.59e-137 | 398 |
| Msa0028580 | AT4G14740.4 | 62.129 | 404 | 133 | 10 | 24 | 419 | 16 | 407 | 8.93e-134 | 393 |
| Msa0028580 | AT4G14740.3 | 67.560 | 336 | 101 | 4 | 156 | 486 | 3 | 335 | 3.18e-133 | 389 |
| Msa0028580 | AT5G43870.2 | 58.374 | 406 | 129 | 10 | 19 | 419 | 15 | 385 | 1.02e-112 | 338 |
| Msa0028580 | AT3G63300.2 | 64.412 | 340 | 110 | 7 | 155 | 489 | 1 | 334 | 4.06e-110 | 330 |
| Msa0028580 | AT4G32780.1 | 34.581 | 454 | 203 | 10 | 26 | 478 | 35 | 395 | 2.47e-41 | 153 |
| Msa0028580 | AT4G17350.1 | 36.544 | 353 | 166 | 10 | 138 | 480 | 82 | 386 | 3.21e-41 | 152 |
| Msa0028580 | AT4G32780.2 | 35.463 | 454 | 199 | 10 | 26 | 478 | 54 | 414 | 3.74e-41 | 152 |
| Msa0028580 | AT4G16670.1 | 35.644 | 303 | 163 | 8 | 189 | 481 | 132 | 412 | 8.21e-38 | 144 |
| Msa0028580 | AT5G47440.1 | 34.421 | 337 | 181 | 8 | 157 | 481 | 79 | 387 | 3.37e-37 | 141 |
| Msa0028580 | AT4G16670.2 | 37.083 | 240 | 120 | 7 | 189 | 418 | 132 | 350 | 4.92e-26 | 109 |
| Msa0028580 | AT4G16670.3 | 33.086 | 269 | 120 | 8 | 189 | 418 | 132 | 379 | 1.48e-20 | 94.0 |
| Msa0028580 | AT5G57770.1 | 33.448 | 290 | 158 | 6 | 141 | 428 | 82 | 338 | 9.66e-20 | 91.7 |
| Msa0028580 | AT5G57770.2 | 33.212 | 274 | 151 | 5 | 141 | 412 | 82 | 325 | 5.19e-19 | 88.6 |
Find 91 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTATTAATTTCCCTTAT+AGG | 0.131479 | 1_1:+53560032 | None:intergenic |
| GTTAAAGAACCACCATTTAA+TGG | 0.205078 | 1_1:+53562992 | None:intergenic |
| ACCAAATAAGGATGAGAAAA+TGG | 0.261318 | 1_1:-53561703 | Msa0028580:CDS |
| TTTGGTTTGCAAATCCTATA+AGG | 0.264951 | 1_1:-53560046 | Msa0028580:three_prime_UTR |
| CAGCATGAAGTTGAGCATTA+TGG | 0.291068 | 1_1:+53561793 | None:intergenic |
| TTAAATGGTGGTTCTTTAAC+AGG | 0.293923 | 1_1:-53562989 | Msa0028580:CDS |
| GCTCTTGTACCATTGAATAA+AGG | 0.299178 | 1_1:+53561918 | None:intergenic |
| TTCCTCTAGCAAGAAGTTCT+TGG | 0.299562 | 1_1:+53560763 | None:intergenic |
| GACAATCTACCTGATGTTAA+TGG | 0.299992 | 1_1:+53563028 | None:intergenic |
| TCCTCTAAAAGATGCCTTCC+TGG | 0.305425 | 1_1:+53560301 | None:intergenic |
| AGCATCAACTACACCAAATA+AGG | 0.313923 | 1_1:-53561715 | Msa0028580:CDS |
| AGAAACTCCATTGGTATTCT+AGG | 0.315941 | 1_1:+53563494 | None:intergenic |
| CCTTGATATATGCAGCTCTA+AGG | 0.317117 | 1_1:-53560971 | Msa0028580:intron |
| AACTCATCAGAAGGAGAAAT+TGG | 0.321795 | 1_1:+53562953 | None:intergenic |
| TATTATATGTATGTTAGTTT+AGG | 0.323108 | 1_1:-53560069 | Msa0028580:three_prime_UTR |
| GAAGGAGGAGGTGGTGGTTG+AGG | 0.346886 | 1_1:+53563422 | None:intergenic |
| CTAGAGAAAGGCATAGGAAT+TGG | 0.354735 | 1_1:-53560882 | Msa0028580:CDS |
| CATAGCAGTGAACCATTAAA+TGG | 0.367882 | 1_1:-53563004 | Msa0028580:CDS |
| AGAGTAGTAATACTTTCTTC+AGG | 0.380242 | 1_1:+53563359 | None:intergenic |
| TTATTTGTAGAAGACTTAGA+AGG | 0.384237 | 1_1:+53563389 | None:intergenic |
| CTCTTGTACCATTGAATAAA+GGG | 0.392154 | 1_1:+53561919 | None:intergenic |
| AAAATAATTGAAAAGATAGA+TGG | 0.394296 | 1_1:+53559961 | None:intergenic |
| TCCATACACCCTTTATTCAA+TGG | 0.400317 | 1_1:-53561927 | Msa0028580:CDS |
| CAAGAAGAAGGAGGAGGTGG+TGG | 0.403057 | 1_1:+53563416 | None:intergenic |
| GGCAATGCAACTCCTTGTTC+AGG | 0.404557 | 1_1:-53561879 | Msa0028580:CDS |
| TATGTATGTTAGTTTAGGTT+TGG | 0.416862 | 1_1:-53560064 | Msa0028580:three_prime_UTR |
| GAAAATGGCTAAGACTGATA+TGG | 0.426643 | 1_1:-53561688 | Msa0028580:CDS |
| TTGGTTTGCAAATCCTATAA+GGG | 0.431585 | 1_1:-53560045 | Msa0028580:three_prime_UTR |
| TGGAATGTAATATTTGTTGC+CGG | 0.440292 | 1_1:-53560134 | Msa0028580:exon |
| AGAGCTATGAGTAGTGGAAT+AGG | 0.445340 | 1_1:-53561900 | Msa0028580:CDS |
| ACCATTGAATAAAGGGTGTA+TGG | 0.446282 | 1_1:+53561926 | None:intergenic |
| TAGAGAAAGGCATAGGAATT+GGG | 0.450618 | 1_1:-53560881 | Msa0028580:CDS |
| TATCTGTAGGTGATCTTCAC+TGG | 0.451022 | 1_1:-53560627 | Msa0028580:intron |
| TCTGTTTATATACATCGAAC+CGG | 0.472832 | 1_1:-53560595 | Msa0028580:CDS |
| AAGCAAGAAGAAGGAGGAGG+TGG | 0.473902 | 1_1:+53563413 | None:intergenic |
| GTGTTGCCATTGTTATTTGT+TGG | 0.477598 | 1_1:+53563533 | None:intergenic |
| ATTGGTATTCTAGGACTCTC+TGG | 0.477798 | 1_1:+53563503 | None:intergenic |
| TGACAATGGATAGTTAACTT+TGG | 0.480512 | 1_1:+53563572 | None:intergenic |
| ATTCCTATGCCTTTCTCTAG+TGG | 0.481026 | 1_1:+53560885 | None:intergenic |
| ATTGGGATATGTGGTGGTAA+AGG | 0.483517 | 1_1:-53560864 | Msa0028580:CDS |
| CTTGATATATGCAGCTCTAA+GGG | 0.484756 | 1_1:-53560970 | Msa0028580:intron |
| TGGAGTTTCTATCAAGATCA+TGG | 0.486579 | 1_1:-53563481 | Msa0028580:CDS |
| AGTTCTAGCACTAGTGAAAG+TGG | 0.488106 | 1_1:-53560828 | Msa0028580:CDS |
| TGCCATTGTTATTTGTTGGA+AGG | 0.506542 | 1_1:+53563537 | None:intergenic |
| GGCATAGGAATTGGGATATG+TGG | 0.513214 | 1_1:-53560873 | Msa0028580:CDS |
| GGTACTCATTTCTATGACAA+TGG | 0.513249 | 1_1:+53563558 | None:intergenic |
| AGATGCCTTCCTGGCCAAGC+TGG | 0.516445 | 1_1:+53560310 | None:intergenic |
| TGTGCACAAATTTACCAGCT+TGG | 0.518454 | 1_1:-53560324 | Msa0028580:CDS |
| ACAAATTTACCAGCTTGGCC+AGG | 0.521574 | 1_1:-53560319 | Msa0028580:CDS |
| TGGTTGAGGTGACAATGCTT+TGG | 0.535346 | 1_1:+53563436 | None:intergenic |
| TGAGTTTGACGATGTTGTTA+AGG | 0.540707 | 1_1:-53562936 | Msa0028580:intron |
| TAGTTTAGTTACCTCTCTTG+CGG | 0.541433 | 1_1:+53563244 | None:intergenic |
| ATCAAAGAGAATATGAATTG+TGG | 0.548198 | 1_1:-53560210 | Msa0028580:CDS |
| CTAACTGCTGCAGCTGCCAC+AGG | 0.549453 | 1_1:-53561531 | Msa0028580:intron |
| TTATATACATCGAACCGGCC+AGG | 0.552074 | 1_1:-53560590 | Msa0028580:intron |
| GAAGTGTCTCCATTAACATC+AGG | 0.553106 | 1_1:-53563037 | Msa0028580:CDS |
| TTAGAAGGTAAGCAAGAAGA+AGG | 0.556769 | 1_1:+53563404 | None:intergenic |
| GACCTAAAACAGTAGGAAGA+TGG | 0.556861 | 1_1:-53561857 | Msa0028580:CDS |
| CAAGATTTCTCAAACATGTG+TGG | 0.561026 | 1_1:-53563332 | Msa0028580:CDS |
| ATGAAAAGCAGACATGTAGC+AGG | 0.561812 | 1_1:-53560472 | Msa0028580:CDS |
| GGTAAGCAAGAAGAAGGAGG+AGG | 0.564082 | 1_1:+53563410 | None:intergenic |
| TGTTGAAGCTGCTGAAGCAA+TGG | 0.569846 | 1_1:-53561628 | Msa0028580:CDS |
| TCATCAGAAGGAGAAATTGG+TGG | 0.570671 | 1_1:+53562956 | None:intergenic |
| TTACTCAAACGCACTCGCAA+AGG | 0.576539 | 1_1:-53560735 | Msa0028580:intron |
| CACTAGTGAAAGTGGAGGAG+AGG | 0.579388 | 1_1:-53560820 | Msa0028580:CDS |
| ATTTACCAGCTTGGCCAGGA+AGG | 0.579688 | 1_1:-53560315 | Msa0028580:CDS |
| GATCTTGATAGAAACTCCAT+TGG | 0.580591 | 1_1:+53563485 | None:intergenic |
| GCAGTCAGCAGTGACTAGAC+CGG | 0.580943 | 1_1:+53560115 | None:intergenic |
| TTCTTTCCATTGTTTCACAC+AGG | 0.583564 | 1_1:-53560168 | Msa0028580:CDS |
| GGCTAAGACTGATATGGCTG+TGG | 0.584637 | 1_1:-53561682 | Msa0028580:CDS |
| GTTGAAGCTGCTGAAGCAAT+GGG | 0.585546 | 1_1:-53561627 | Msa0028580:CDS |
| ACATCGTCAAACTCATCAGA+AGG | 0.588966 | 1_1:+53562944 | None:intergenic |
| GCAGTGACACCACTAGAGAA+AGG | 0.594746 | 1_1:-53560894 | Msa0028580:CDS |
| TGATATATGCAGCTCTAAGG+GGG | 0.594778 | 1_1:-53560968 | Msa0028580:intron |
| AGAGAGTCCTAGAATACCAA+TGG | 0.596028 | 1_1:-53563501 | Msa0028580:CDS |
| CAAGAGCAATGAAAGAGATG+TGG | 0.596042 | 1_1:-53560929 | Msa0028580:CDS |
| GGTACAAGAGCTATGAGTAG+TGG | 0.599275 | 1_1:-53561906 | Msa0028580:CDS |
| TGTTCAGGACCTAAAACAGT+AGG | 0.601269 | 1_1:-53561864 | Msa0028580:CDS |
| AGCCAAGAACTTCTTGCTAG+AGG | 0.604636 | 1_1:-53560765 | Msa0028580:CDS |
| TTGATATATGCAGCTCTAAG+GGG | 0.610071 | 1_1:-53560969 | Msa0028580:intron |
| CATGTCACAATCCGCAAGAG+AGG | 0.623909 | 1_1:-53563255 | Msa0028580:intron |
| TACCTTCCAACAAATAACAA+TGG | 0.629115 | 1_1:-53563539 | Msa0028580:CDS |
| GAAGGTAAGCAAGAAGAAGG+AGG | 0.632750 | 1_1:+53563407 | None:intergenic |
| GAATATGAATTGTGGACACA+AGG | 0.642531 | 1_1:-53560202 | Msa0028580:CDS |
| TCTAGCACTAGTGAAAGTGG+AGG | 0.643530 | 1_1:-53560825 | Msa0028580:CDS |
| ATAGGAATTGGGATATGTGG+TGG | 0.646985 | 1_1:-53560870 | Msa0028580:CDS |
| ACACCACTAGAGAAAGGCAT+AGG | 0.653956 | 1_1:-53560888 | Msa0028580:CDS |
| CAGAACTAACAACAGAAGCA+AGG | 0.657396 | 1_1:+53561589 | None:intergenic |
| AGCAGTGAACCATTAAATGG+TGG | 0.669009 | 1_1:-53563001 | Msa0028580:CDS |
| GATATATGCAGCTCTAAGGG+GGG | 0.694136 | 1_1:-53560967 | Msa0028580:intron |
| GGATTGAAGACAGAATCAAG+AGG | 0.704203 | 1_1:-53560256 | Msa0028580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAAAAAAATAAAGGT+TGG | + | chr1_1:53562122-53562141 | None:intergenic | 10.0% |
| !! | ATCATTCATATTATTTATTT+AGG | - | chr1_1:53562264-53562283 | Msa0028580:intron | 10.0% |
| !! | TCATTCATATTATTTATTTA+GGG | - | chr1_1:53562265-53562284 | Msa0028580:intron | 10.0% |
| !! | AAAAATGATTAAACTATATT+TGG | - | chr1_1:53562906-53562925 | Msa0028580:intron | 10.0% |
| !!! | GTTTTTTGTTTATAGTAATT+TGG | - | chr1_1:53560478-53560497 | Msa0028580:CDS | 15.0% |
| !!! | AAAGTAGTACTATTTTATTA+TGG | + | chr1_1:53560951-53560970 | None:intergenic | 15.0% |
| !! | AAGCATATCATTAATAATAT+TGG | + | chr1_1:53561578-53561597 | None:intergenic | 15.0% |
| !! | TAGAAATTAAAAATTCAGTT+GGG | - | chr1_1:53563022-53563041 | Msa0028580:CDS | 15.0% |
| !!! | TATTATATGTATGTTAGTTT+AGG | - | chr1_1:53563494-53563513 | Msa0028580:CDS | 15.0% |
| !!! | ATTAATAGATTTTGTAACAT+TGG | - | chr1_1:53563543-53563562 | Msa0028580:CDS | 15.0% |
| !!! | TAAAGTTTGTTTTATGTAAC+AGG | - | chr1_1:53560504-53560523 | Msa0028580:intron | 20.0% |
| !! | ATAAAATAGTACTACTTTCT+TGG | - | chr1_1:53560953-53560972 | Msa0028580:CDS | 20.0% |
| !! | ATATGAACAAAATGTGTAAT+TGG | + | chr1_1:53561136-53561155 | None:intergenic | 20.0% |
| !!! | TCAGAATTTTTTTATTCAGA+TGG | - | chr1_1:53561551-53561570 | Msa0028580:CDS | 20.0% |
| !!! | ATATTATTTATTTAGGGTAG+TGG | - | chr1_1:53562271-53562290 | Msa0028580:intron | 20.0% |
| !! | AAAAAATCATACTACAAAAC+AGG | + | chr1_1:53562538-53562557 | None:intergenic | 20.0% |
| !! | TGAAAGATAAAAAAATTACC+TGG | + | chr1_1:53562994-53563013 | None:intergenic | 20.0% |
| !! | GTAGAAATTAAAAATTCAGT+TGG | - | chr1_1:53563021-53563040 | Msa0028580:CDS | 20.0% |
| !!! | CAAATGTTTGTAACAATTTT+AGG | - | chr1_1:53563057-53563076 | Msa0028580:intron | 20.0% |
| !!! | ACTCTTTTTCTTTTTTGTAA+TGG | + | chr1_1:53563119-53563138 | None:intergenic | 20.0% |
| !!! | ATTATTTCTATGATATTGCA+AGG | + | chr1_1:53563170-53563189 | None:intergenic | 20.0% |
| !! | CATAGAAATAATAACTCATT+TGG | - | chr1_1:53563178-53563197 | Msa0028580:intron | 20.0% |
| !! | AATCTATTAATTTCCCTTAT+AGG | + | chr1_1:53563534-53563553 | None:intergenic | 20.0% |
| ! | CAATATTCAAGTCACAAAAA+TGG | - | chr1_1:53559966-53559985 | Msa0028580:three_prime_UTR | 25.0% |
| ! | TTATTTGTAGAAGACTTAGA+AGG | + | chr1_1:53560177-53560196 | None:intergenic | 25.0% |
| ! | TTCCTACATATACTTCAAAA+GGG | + | chr1_1:53560365-53560384 | None:intergenic | 25.0% |
| ! | TTTCCTACATATACTTCAAA+AGG | + | chr1_1:53560366-53560385 | None:intergenic | 25.0% |
| ! | TATATGTAGGAAAAGACTTA+AGG | - | chr1_1:53560373-53560392 | Msa0028580:intron | 25.0% |
| ! | ATATGTAGGAAAAGACTTAA+GGG | - | chr1_1:53560374-53560393 | Msa0028580:intron | 25.0% |
| !!! | AGACATTGTTATTCTTTTCA+AGG | - | chr1_1:53560450-53560469 | Msa0028580:CDS | 25.0% |
| !!! | TGTTATTCTTTTCAAGGTTT+TGG | - | chr1_1:53560456-53560475 | Msa0028580:CDS | 25.0% |
| ! | ACTACTTTCTTGGTTTAATA+TGG | - | chr1_1:53560963-53560982 | Msa0028580:intron | 25.0% |
| ! | TTACAACAGTAACAATACTT+TGG | - | chr1_1:53561012-53561031 | Msa0028580:intron | 25.0% |
| ! | AAAATGTGTAATTGGATTCA+TGG | + | chr1_1:53561128-53561147 | None:intergenic | 25.0% |
| !! | TGAACTTTGAACATAACTTT+TGG | - | chr1_1:53561301-53561320 | Msa0028580:intron | 25.0% |
| !! | TTTGAACATAACTTTTGGAT+GGG | - | chr1_1:53561306-53561325 | Msa0028580:intron | 25.0% |
| ! | GTTAAAAAATGTCACAATGT+TGG | - | chr1_1:53562095-53562114 | Msa0028580:intron | 25.0% |
| ! | AATCTCGATTAGAAAATGTA+TGG | + | chr1_1:53562308-53562327 | None:intergenic | 25.0% |
| ! | CTGTAAAGAATCAACTAATA+AGG | - | chr1_1:53562471-53562490 | Msa0028580:intron | 25.0% |
| !! | ATTTTTACCAGATATTGTGT+TGG | - | chr1_1:53563213-53563232 | Msa0028580:intron | 25.0% |
| ! | ATCAAAGAGAATATGAATTG+TGG | - | chr1_1:53563353-53563372 | Msa0028580:CDS | 25.0% |
| !! | TATGTATGTTAGTTTAGGTT+TGG | - | chr1_1:53563499-53563518 | Msa0028580:CDS | 25.0% |
| !! | TAGATTTTGTAACATTGGAA+TGG | - | chr1_1:53563548-53563567 | Msa0028580:CDS | 25.0% |
| !! | AGATTTTGTAACATTGGAAT+GGG | - | chr1_1:53563549-53563568 | Msa0028580:CDS | 25.0% |
| TGACAATGGATAGTTAACTT+TGG | + | chr1_1:53559994-53560013 | None:intergenic | 30.0% | |
| TACCTTCCAACAAATAACAA+TGG | - | chr1_1:53560024-53560043 | Msa0028580:three_prime_UTR | 30.0% | |
| AGAGTAGTAATACTTTCTTC+AGG | + | chr1_1:53560207-53560226 | None:intergenic | 30.0% | |
| TCCTACATATACTTCAAAAG+GGG | + | chr1_1:53560364-53560383 | None:intergenic | 30.0% | |
| GTTAAAGAACCACCATTTAA+TGG | + | chr1_1:53560574-53560593 | None:intergenic | 30.0% | |
| TTAAATGGTGGTTCTTTAAC+AGG | - | chr1_1:53560574-53560593 | Msa0028580:intron | 30.0% | |
| !! | ACTGCAACAATTGTTTCTAA+GGG | + | chr1_1:53560696-53560715 | None:intergenic | 30.0% |
| AAAACTAAATCTAGCAGCAA+GGG | - | chr1_1:53560832-53560851 | Msa0028580:CDS | 30.0% | |
| GTAACAATACTTTGGTATAG+AGG | - | chr1_1:53561020-53561039 | Msa0028580:intron | 30.0% | |
| ! | TACTTTGGTATAGAGGTTTT+TGG | - | chr1_1:53561027-53561046 | Msa0028580:intron | 30.0% |
| AGTAAATTGTACACCACTAA+TGG | - | chr1_1:53561168-53561187 | Msa0028580:intron | 30.0% | |
| !!! | TCTTTTTTTTTGTCAGGTAG+TGG | + | chr1_1:53561207-53561226 | None:intergenic | 30.0% |
| !!! | GTTAGCTCTTTTTTTTTGTC+AGG | + | chr1_1:53561213-53561232 | None:intergenic | 30.0% |
| AAGTCATAAGCTATAACACT+AGG | + | chr1_1:53561241-53561260 | None:intergenic | 30.0% | |
| ! | CTTTGAACATAACTTTTGGA+TGG | - | chr1_1:53561305-53561324 | Msa0028580:intron | 30.0% |
| AATCAGAAGATAAGGTACAT+TGG | + | chr1_1:53561437-53561456 | None:intergenic | 30.0% | |
| GAAAATATGCCAAAATGAGA+AGG | + | chr1_1:53561471-53561490 | None:intergenic | 30.0% | |
| TTTCCTAGTTAAATGCTGAA+GGG | + | chr1_1:53561513-53561532 | None:intergenic | 30.0% | |
| ! | TTTTCCTAGTTAAATGCTGA+AGG | + | chr1_1:53561514-53561533 | None:intergenic | 30.0% |
| CTCTTGTACCATTGAATAAA+GGG | + | chr1_1:53561647-53561666 | None:intergenic | 30.0% | |
| ACCAAATAAGGATGAGAAAA+TGG | - | chr1_1:53561860-53561879 | Msa0028580:CDS | 30.0% | |
| AATGAAGAAAATTCTACCTG+TGG | + | chr1_1:53562051-53562070 | None:intergenic | 30.0% | |
| AGTCTAGTTATGAAATTGAG+TGG | - | chr1_1:53562221-53562240 | Msa0028580:intron | 30.0% | |
| !! | TATTTATTTAGGGTAGTGGA+AGG | - | chr1_1:53562275-53562294 | Msa0028580:intron | 30.0% |
| !! | ATTTATTTAGGGTAGTGGAA+GGG | - | chr1_1:53562276-53562295 | Msa0028580:intron | 30.0% |
| ! | ATTTGGTGATTGATATCTGT+AGG | - | chr1_1:53562923-53562942 | Msa0028580:intron | 30.0% |
| TCTGTTTATATACATCGAAC+CGG | - | chr1_1:53562968-53562987 | Msa0028580:CDS | 30.0% | |
| AGATAAAAAAATTACCTGGC+CGG | + | chr1_1:53562990-53563009 | None:intergenic | 30.0% | |
| !!! | GGTGAAAAAAGAAGGTATTT+TGG | - | chr1_1:53563286-53563305 | Msa0028580:CDS | 30.0% |
| ! | TGGAATGTAATATTTGTTGC+CGG | - | chr1_1:53563429-53563448 | Msa0028580:CDS | 30.0% |
| !! | TTTGGTTTGCAAATCCTATA+AGG | - | chr1_1:53563517-53563536 | Msa0028580:CDS | 30.0% |
| !! | TTGGTTTGCAAATCCTATAA+GGG | - | chr1_1:53563518-53563537 | Msa0028580:CDS | 30.0% |
| GGTACTCATTTCTATGACAA+TGG | + | chr1_1:53560008-53560027 | None:intergenic | 35.0% | |
| !! | TGCCATTGTTATTTGTTGGA+AGG | + | chr1_1:53560029-53560048 | None:intergenic | 35.0% |
| !! | GTGTTGCCATTGTTATTTGT+TGG | + | chr1_1:53560033-53560052 | None:intergenic | 35.0% |
| AGAAACTCCATTGGTATTCT+AGG | + | chr1_1:53560072-53560091 | None:intergenic | 35.0% | |
| GATCTTGATAGAAACTCCAT+TGG | + | chr1_1:53560081-53560100 | None:intergenic | 35.0% | |
| TGGAGTTTCTATCAAGATCA+TGG | - | chr1_1:53560082-53560101 | Msa0028580:three_prime_UTR | 35.0% | |
| TTAGAAGGTAAGCAAGAAGA+AGG | + | chr1_1:53560162-53560181 | None:intergenic | 35.0% | |
| CAAGATTTCTCAAACATGTG+TGG | - | chr1_1:53560231-53560250 | Msa0028580:CDS | 35.0% | |
| TAGTTTAGTTACCTCTCTTG+CGG | + | chr1_1:53560322-53560341 | None:intergenic | 35.0% | |
| !!! | ACCCCTTTTGAAGTATATGT+AGG | - | chr1_1:53560360-53560379 | Msa0028580:intron | 35.0% |
| GACAATCTACCTGATGTTAA+TGG | + | chr1_1:53560538-53560557 | None:intergenic | 35.0% | |
| CATAGCAGTGAACCATTAAA+TGG | - | chr1_1:53560559-53560578 | Msa0028580:intron | 35.0% | |
| AACTCATCAGAAGGAGAAAT+TGG | + | chr1_1:53560613-53560632 | None:intergenic | 35.0% | |
| TGAGTTTGACGATGTTGTTA+AGG | - | chr1_1:53560627-53560646 | Msa0028580:intron | 35.0% | |
| !! | TGTTCCCTTACCTTTTGTTT+TGG | - | chr1_1:53560658-53560677 | Msa0028580:intron | 35.0% |
| !!! | GTTCCCTTACCTTTTGTTTT+GGG | - | chr1_1:53560659-53560678 | Msa0028580:intron | 35.0% |
| CAACCCAAAACAAAAGGTAA+GGG | + | chr1_1:53560665-53560684 | None:intergenic | 35.0% | |
| !! | GACTGCAACAATTGTTTCTA+AGG | + | chr1_1:53560697-53560716 | None:intergenic | 35.0% |
| CAAAACTAAATCTAGCAGCA+AGG | - | chr1_1:53560831-53560850 | Msa0028580:CDS | 35.0% | |
| AAACATGTGATCCAAAAGTG+AGG | + | chr1_1:53560923-53560942 | None:intergenic | 35.0% | |
| !! | GGTGTACAATTTACTTTTGC+AGG | + | chr1_1:53561163-53561182 | None:intergenic | 35.0% |
| ! | AAAGCATTAGAGACCATTAG+TGG | + | chr1_1:53561184-53561203 | None:intergenic | 35.0% |
| ATATGCCAAAATGAGAAGGT+TGG | + | chr1_1:53561467-53561486 | None:intergenic | 35.0% | |
| TCCATACACCCTTTATTCAA+TGG | - | chr1_1:53561636-53561655 | Msa0028580:CDS | 35.0% | |
| ! | ACCATTGAATAAAGGGTGTA+TGG | + | chr1_1:53561640-53561659 | None:intergenic | 35.0% |
| GCTCTTGTACCATTGAATAA+AGG | + | chr1_1:53561648-53561667 | None:intergenic | 35.0% | |
| ! | AACCATCTTCCTACTGTTTT+AGG | + | chr1_1:53561711-53561730 | None:intergenic | 35.0% |
| AGCATCAACTACACCAAATA+AGG | - | chr1_1:53561848-53561867 | Msa0028580:CDS | 35.0% | |
| !! | GCCATTTTCTCATCCTTATT+TGG | + | chr1_1:53561864-53561883 | None:intergenic | 35.0% |
| GAAAATGGCTAAGACTGATA+TGG | - | chr1_1:53561875-53561894 | Msa0028580:CDS | 35.0% | |
| TTCTAATCGAGATTCGAACT+CGG | - | chr1_1:53562314-53562333 | Msa0028580:intron | 35.0% | |
| GGTGACTGCTTAACTTTATA+AGG | + | chr1_1:53562341-53562360 | None:intergenic | 35.0% | |
| AGGAATGTTCATGTTACACA+TGG | - | chr1_1:53562491-53562510 | Msa0028580:intron | 35.0% | |
| ! | ATGTTACACATGGTTTGTCA+GGG | - | chr1_1:53562501-53562520 | Msa0028580:intron | 35.0% |
| ATTGGCAATATAACAAGGAC+AGG | + | chr1_1:53562563-53562582 | None:intergenic | 35.0% | |
| ! | TCCTTGTTATATTGCCAATG+TGG | - | chr1_1:53562564-53562583 | Msa0028580:intron | 35.0% |
| ACCACATTGGCAATATAACA+AGG | + | chr1_1:53562568-53562587 | None:intergenic | 35.0% | |
| ! | CTTGATATATGCAGCTCTAA+GGG | - | chr1_1:53562593-53562612 | Msa0028580:intron | 35.0% |
| !! | TTGATATATGCAGCTCTAAG+GGG | - | chr1_1:53562594-53562613 | Msa0028580:intron | 35.0% |
| ! | TAGAGAAAGGCATAGGAATT+GGG | - | chr1_1:53562682-53562701 | Msa0028580:intron | 35.0% |
| TAGAGGATGGTGAAAAAAGA+AGG | - | chr1_1:53563278-53563297 | Msa0028580:CDS | 35.0% | |
| GAATATGAATTGTGGACACA+AGG | - | chr1_1:53563361-53563380 | Msa0028580:CDS | 35.0% | |
| TTCTTTCCATTGTTTCACAC+AGG | - | chr1_1:53563395-53563414 | Msa0028580:CDS | 35.0% | |
| ! | GTTTTTCCTGTGTGAAACAA+TGG | + | chr1_1:53563404-53563423 | None:intergenic | 35.0% |
| TCACACAGGAAAAACAGAAA+TGG | - | chr1_1:53563409-53563428 | Msa0028580:CDS | 35.0% | |
| !! | ATTGGTATTCTAGGACTCTC+TGG | + | chr1_1:53560063-53560082 | None:intergenic | 40.0% |
| AGAGAGTCCTAGAATACCAA+TGG | - | chr1_1:53560062-53560081 | Msa0028580:three_prime_UTR | 40.0% | |
| ! | GAAGTGTCTCCATTAACATC+AGG | - | chr1_1:53560526-53560545 | Msa0028580:intron | 40.0% |
| AGCAGTGAACCATTAAATGG+TGG | - | chr1_1:53560562-53560581 | Msa0028580:intron | 40.0% | |
| TCATCAGAAGGAGAAATTGG+TGG | + | chr1_1:53560610-53560629 | None:intergenic | 40.0% | |
| ACATCGTCAAACTCATCAGA+AGG | + | chr1_1:53560622-53560641 | None:intergenic | 40.0% | |
| CCAACCCAAAACAAAAGGTA+AGG | + | chr1_1:53560666-53560685 | None:intergenic | 40.0% | |
| !!! | CCTTACCTTTTGTTTTGGGT+TGG | - | chr1_1:53560663-53560682 | Msa0028580:intron | 40.0% |
| !!! | CTTTTGTTTTGGGTTGGAGT+GGG | - | chr1_1:53560669-53560688 | Msa0028580:intron | 40.0% |
| CAAGAGGAAGATACTAGACA+GGG | + | chr1_1:53560897-53560916 | None:intergenic | 40.0% | |
| GTTGCGTGAATCAGAAGATA+AGG | + | chr1_1:53561445-53561464 | None:intergenic | 40.0% | |
| ! | AGAGCTATGAGTAGTGGAAT+AGG | - | chr1_1:53561663-53561682 | Msa0028580:CDS | 40.0% |
| !! | ACTGTTTTAGGTCCTGAACA+AGG | + | chr1_1:53561699-53561718 | None:intergenic | 40.0% |
| TGTTCAGGACCTAAAACAGT+AGG | - | chr1_1:53561699-53561718 | Msa0028580:CDS | 40.0% | |
| GACCTAAAACAGTAGGAAGA+TGG | - | chr1_1:53561706-53561725 | Msa0028580:CDS | 40.0% | |
| CAGCATGAAGTTGAGCATTA+TGG | + | chr1_1:53561773-53561792 | None:intergenic | 40.0% | |
| CAGAACTAACAACAGAAGCA+AGG | + | chr1_1:53561977-53561996 | None:intergenic | 40.0% | |
| ! | CATGTTACACATGGTTTGTC+AGG | - | chr1_1:53562500-53562519 | Msa0028580:intron | 40.0% |
| ! | TGTTACACATGGTTTGTCAG+GGG | - | chr1_1:53562502-53562521 | Msa0028580:intron | 40.0% |
| ATATCAAGGAAGGACCACAT+TGG | + | chr1_1:53562581-53562600 | None:intergenic | 40.0% | |
| AGAGCTGCATATATCAAGGA+AGG | + | chr1_1:53562591-53562610 | None:intergenic | 40.0% | |
| CCTTAGAGCTGCATATATCA+AGG | + | chr1_1:53562595-53562614 | None:intergenic | 40.0% | |
| CCTTGATATATGCAGCTCTA+AGG | - | chr1_1:53562592-53562611 | Msa0028580:intron | 40.0% | |
| !! | TGATATATGCAGCTCTAAGG+GGG | - | chr1_1:53562595-53562614 | Msa0028580:intron | 40.0% |
| CAAGAGCAATGAAAGAGATG+TGG | - | chr1_1:53562634-53562653 | Msa0028580:intron | 40.0% | |
| ATTCCTATGCCTTTCTCTAG+TGG | + | chr1_1:53562681-53562700 | None:intergenic | 40.0% | |
| ! | CTAGAGAAAGGCATAGGAAT+TGG | - | chr1_1:53562681-53562700 | Msa0028580:intron | 40.0% |
| ATAGGAATTGGGATATGTGG+TGG | - | chr1_1:53562693-53562712 | Msa0028580:intron | 40.0% | |
| ATTGGGATATGTGGTGGTAA+AGG | - | chr1_1:53562699-53562718 | Msa0028580:intron | 40.0% | |
| ! | AGTTCTAGCACTAGTGAAAG+TGG | - | chr1_1:53562735-53562754 | Msa0028580:intron | 40.0% |
| TTCCTCTAGCAAGAAGTTCT+TGG | + | chr1_1:53562803-53562822 | None:intergenic | 40.0% | |
| TATCTGTAGGTGATCTTCAC+TGG | - | chr1_1:53562936-53562955 | Msa0028580:intron | 40.0% | |
| ATGAAAAGCAGACATGTAGC+AGG | - | chr1_1:53563091-53563110 | Msa0028580:intron | 40.0% | |
| CACACATCCAACACAATATC+TGG | + | chr1_1:53563223-53563242 | None:intergenic | 40.0% | |
| TGTGCACAAATTTACCAGCT+TGG | - | chr1_1:53563239-53563258 | Msa0028580:intron | 40.0% | |
| GGATTGAAGACAGAATCAAG+AGG | - | chr1_1:53563307-53563326 | Msa0028580:CDS | 40.0% | |
| TGGTTGAGGTGACAATGCTT+TGG | + | chr1_1:53560130-53560149 | None:intergenic | 45.0% | |
| GAAGGTAAGCAAGAAGAAGG+AGG | + | chr1_1:53560159-53560178 | None:intergenic | 45.0% | |
| CCACTCCAACCCAAAACAAA+AGG | + | chr1_1:53560671-53560690 | None:intergenic | 45.0% | |
| !!! | CCTTTTGTTTTGGGTTGGAG+TGG | - | chr1_1:53560668-53560687 | Msa0028580:intron | 45.0% |
| GCAAGAGGAAGATACTAGAC+AGG | + | chr1_1:53560898-53560917 | None:intergenic | 45.0% | |
| ! | TCCTCTTGCAACCTCACTTT+TGG | - | chr1_1:53560909-53560928 | Msa0028580:CDS | 45.0% |
| TCCAAAAGTGAGGTTGCAAG+AGG | + | chr1_1:53560913-53560932 | None:intergenic | 45.0% | |
| CTGTCTAACAATCAGCAAGC+AGG | + | chr1_1:53561393-53561412 | None:intergenic | 45.0% | |
| ! | CTTGCTGATTGTTAGACAGC+AGG | - | chr1_1:53561394-53561413 | Msa0028580:intron | 45.0% |
| ! | CGCAACCAACCTTCTCATTT+TGG | - | chr1_1:53561459-53561478 | Msa0028580:intron | 45.0% |
| GCTCCCTTCAGCATTTAACT+AGG | - | chr1_1:53561507-53561526 | Msa0028580:intron | 45.0% | |
| GGTACAAGAGCTATGAGTAG+TGG | - | chr1_1:53561657-53561676 | Msa0028580:CDS | 45.0% | |
| TGTTGAAGCTGCTGAAGCAA+TGG | - | chr1_1:53561935-53561954 | Msa0028580:CDS | 45.0% | |
| GTTGAAGCTGCTGAAGCAAT+GGG | - | chr1_1:53561936-53561955 | Msa0028580:CDS | 45.0% | |
| !! | GATATATGCAGCTCTAAGGG+GGG | - | chr1_1:53562596-53562615 | Msa0028580:intron | 45.0% |
| ! | ACACCACTAGAGAAAGGCAT+AGG | - | chr1_1:53562675-53562694 | Msa0028580:intron | 45.0% |
| GGCATAGGAATTGGGATATG+TGG | - | chr1_1:53562690-53562709 | Msa0028580:intron | 45.0% | |
| TCTAGCACTAGTGAAAGTGG+AGG | - | chr1_1:53562738-53562757 | Msa0028580:intron | 45.0% | |
| AGCCAAGAACTTCTTGCTAG+AGG | - | chr1_1:53562798-53562817 | Msa0028580:intron | 45.0% | |
| TTACTCAAACGCACTCGCAA+AGG | - | chr1_1:53562828-53562847 | Msa0028580:intron | 45.0% | |
| TTATATACATCGAACCGGCC+AGG | - | chr1_1:53562973-53562992 | Msa0028580:CDS | 45.0% | |
| ACAAATTTACCAGCTTGGCC+AGG | - | chr1_1:53563244-53563263 | Msa0028580:intron | 45.0% | |
| ! | TCCTCTAAAAGATGCCTTCC+TGG | + | chr1_1:53563265-53563284 | None:intergenic | 45.0% |
| !!! | GGAAGGCATCTTTTAGAGGA+TGG | - | chr1_1:53563265-53563284 | Msa0028580:CDS | 45.0% |
| !! | TTCATATATAAAAAAAATAA+AGG | + | chr1_1:53562126-53562145 | None:intergenic | 5.0% |
| AAGCAAGAAGAAGGAGGAGG+TGG | + | chr1_1:53560153-53560172 | None:intergenic | 50.0% | |
| GGTAAGCAAGAAGAAGGAGG+AGG | + | chr1_1:53560156-53560175 | None:intergenic | 50.0% | |
| CATGTCACAATCCGCAAGAG+AGG | - | chr1_1:53560308-53560327 | Msa0028580:CDS | 50.0% | |
| AGGAAGATACTAGACAGGGC+CGG | + | chr1_1:53560893-53560912 | None:intergenic | 50.0% | |
| AATCAGCAAGCAGGCAGGTT+TGG | + | chr1_1:53561384-53561403 | None:intergenic | 50.0% | |
| CTAACAATCAGCAAGCAGGC+AGG | + | chr1_1:53561389-53561408 | None:intergenic | 50.0% | |
| GGCAATGCAACTCCTTGTTC+AGG | - | chr1_1:53561684-53561703 | Msa0028580:CDS | 50.0% | |
| GGCTAAGACTGATATGGCTG+TGG | - | chr1_1:53561881-53561900 | Msa0028580:CDS | 50.0% | |
| ! | TTTCGTGTGTGATAGCGCAG+TGG | + | chr1_1:53562362-53562381 | None:intergenic | 50.0% |
| GCAGTGACACCACTAGAGAA+AGG | - | chr1_1:53562669-53562688 | Msa0028580:intron | 50.0% | |
| CACTAGTGAAAGTGGAGGAG+AGG | - | chr1_1:53562743-53562762 | Msa0028580:intron | 50.0% | |
| ATTTACCAGCTTGGCCAGGA+AGG | - | chr1_1:53563248-53563267 | Msa0028580:intron | 50.0% | |
| !!! | GCCAGGAAGGCATCTTTTAG+AGG | - | chr1_1:53563261-53563280 | Msa0028580:CDS | 50.0% |
| CAAGAAGAAGGAGGAGGTGG+TGG | + | chr1_1:53560150-53560169 | None:intergenic | 55.0% | |
| AATCTAGCAGCAAGGGCCCT+AGG | - | chr1_1:53560839-53560858 | Msa0028580:CDS | 55.0% | |
| ! | AGCAGGCAGGTTTGGTTGAC+AGG | + | chr1_1:53561376-53561395 | None:intergenic | 55.0% |
| GCAGTCAGCAGTGACTAGAC+CGG | + | chr1_1:53563451-53563470 | None:intergenic | 55.0% | |
| ! | GAAGGAGGAGGTGGTGGTTG+AGG | + | chr1_1:53560144-53560163 | None:intergenic | 60.0% |
| CTAACTGCTGCAGCTGCCAC+AGG | - | chr1_1:53562032-53562051 | Msa0028580:intron | 60.0% | |
| AGATGCCTTCCTGGCCAAGC+TGG | + | chr1_1:53563256-53563275 | None:intergenic | 60.0% | |
| TACTAGACAGGGCCGGCCCT+AGG | + | chr1_1:53560886-53560905 | None:intergenic | 65.0% | |
| GCACCCCCGGCCTATGCCTA+GGG | - | chr1_1:53560867-53560886 | Msa0028580:CDS | 70.0% | |
| ACAGGGCCGGCCCTAGGCAT+AGG | + | chr1_1:53560880-53560899 | None:intergenic | 70.0% | |
| GCCCTAGGTGCTCGCACCCC+CGG | - | chr1_1:53560854-53560873 | Msa0028580:CDS | 75.0% | |
| ! | GCCGGGGGTGCGAGCACCTA+GGG | + | chr1_1:53560858-53560877 | None:intergenic | 75.0% |
| CGCACCCCCGGCCTATGCCT+AGG | - | chr1_1:53560866-53560885 | Msa0028580:CDS | 75.0% | |
| CGGCCCTAGGCATAGGCCGG+GGG | + | chr1_1:53560873-53560892 | None:intergenic | 75.0% | |
| CCGGCCCTAGGCATAGGCCG+GGG | + | chr1_1:53560874-53560893 | None:intergenic | 75.0% | |
| CCCCGGCCTATGCCTAGGGC+CGG | - | chr1_1:53560871-53560890 | Msa0028580:CDS | 75.0% | |
| GCCGGCCCTAGGCATAGGCC+GGG | + | chr1_1:53560875-53560894 | None:intergenic | 75.0% | |
| GGCCGGCCCTAGGCATAGGC+CGG | + | chr1_1:53560876-53560895 | None:intergenic | 75.0% | |
| !! | GGCCGGGGGTGCGAGCACCT+AGG | + | chr1_1:53560859-53560878 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 53559965 | 53563620 | 53559965 | ID=Msa0028580;Name=Msa0028580 |
| chr1_1 | mRNA | 53559965 | 53563620 | 53559965 | ID=Msa0028580-mRNA-1;Parent=Msa0028580;Name=Msa0028580-mRNA-1;_AED=0.06;_eAED=0.06;_QI=20|1|1|1|1|1|7|182|489 |
| chr1_1 | exon | 53559965 | 53560361 | 53559965 | ID=Msa0028580-mRNA-1:exon:15783;Parent=Msa0028580-mRNA-1 |
| chr1_1 | exon | 53560449 | 53560506 | 53560449 | ID=Msa0028580-mRNA-1:exon:15782;Parent=Msa0028580-mRNA-1 |
| chr1_1 | exon | 53560591 | 53560640 | 53560591 | ID=Msa0028580-mRNA-1:exon:15781;Parent=Msa0028580-mRNA-1 |
| chr1_1 | exon | 53560736 | 53560978 | 53560736 | ID=Msa0028580-mRNA-1:exon:15780;Parent=Msa0028580-mRNA-1 |
| chr1_1 | exon | 53561532 | 53561967 | 53561532 | ID=Msa0028580-mRNA-1:exon:15779;Parent=Msa0028580-mRNA-1 |
| chr1_1 | exon | 53562937 | 53563059 | 53562937 | ID=Msa0028580-mRNA-1:exon:15778;Parent=Msa0028580-mRNA-1 |
| chr1_1 | exon | 53563256 | 53563620 | 53563256 | ID=Msa0028580-mRNA-1:exon:15777;Parent=Msa0028580-mRNA-1 |
| chr1_1 | five_prime_UTR | 53563601 | 53563620 | 53563601 | ID=Msa0028580-mRNA-1:five_prime_utr;Parent=Msa0028580-mRNA-1 |
| chr1_1 | CDS | 53563256 | 53563600 | 53563256 | ID=Msa0028580-mRNA-1:cds;Parent=Msa0028580-mRNA-1 |
| chr1_1 | CDS | 53562937 | 53563059 | 53562937 | ID=Msa0028580-mRNA-1:cds;Parent=Msa0028580-mRNA-1 |
| chr1_1 | CDS | 53561532 | 53561967 | 53561532 | ID=Msa0028580-mRNA-1:cds;Parent=Msa0028580-mRNA-1 |
| chr1_1 | CDS | 53560736 | 53560978 | 53560736 | ID=Msa0028580-mRNA-1:cds;Parent=Msa0028580-mRNA-1 |
| chr1_1 | CDS | 53560591 | 53560640 | 53560591 | ID=Msa0028580-mRNA-1:cds;Parent=Msa0028580-mRNA-1 |
| chr1_1 | CDS | 53560449 | 53560506 | 53560449 | ID=Msa0028580-mRNA-1:cds;Parent=Msa0028580-mRNA-1 |
| chr1_1 | CDS | 53560147 | 53560361 | 53560147 | ID=Msa0028580-mRNA-1:cds;Parent=Msa0028580-mRNA-1 |
| chr1_1 | three_prime_UTR | 53559965 | 53560146 | 53559965 | ID=Msa0028580-mRNA-1:three_prime_utr;Parent=Msa0028580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
