AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137210 MtrunA17_Chr1g0209261 98.544 206 3 0 1 206 1 206 1.38e-151 418
Msa0137210 MtrunA17_Chr8g0376101 46.429 196 101 1 13 204 26 221 2.48e-63 196
Msa0137210 MtrunA17_Chr8g0387631 39.303 201 116 2 10 204 58 258 1.18e-49 162
Msa0137210 MtrunA17_Chr1g0202401 40.415 193 109 2 10 196 51 243 2.93e-44 147
Msa0137210 MtrunA17_Chr8g0348131 38.235 204 116 3 10 203 62 265 4.08e-44 148
Msa0137210 MtrunA17_Chr3g0095441 34.946 186 115 2 10 189 43 228 1.29e-35 125
Msa0137210 MtrunA17_Chr5g0442361 35.678 199 116 4 10 198 42 238 1.41e-35 125
Msa0137210 MtrunA17_Chr3g0108661 34.132 167 106 1 14 176 53 219 8.44e-27 102
Msa0137210 MtrunA17_Chr4g0005701 29.082 196 135 1 13 204 12 207 4.54e-21 86.7
Msa0137210 MtrunA17_Chr1g0208091 28.718 195 135 1 14 204 8 202 2.79e-19 82.0
Msa0137210 MtrunA17_Chr6g0453331 28.649 185 128 1 24 204 13 197 2.28e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137210 AT3G18260.1 45.178 197 104 1 13 205 28 224 7.35e-60 187
Msa0137210 AT1G68230.2 46.354 192 101 1 15 204 22 213 4.95e-58 182
Msa0137210 AT4G11220.1 39.303 201 116 2 10 204 69 269 6.05e-52 168
Msa0137210 AT4G23630.1 39.303 201 116 2 10 204 73 273 2.32e-51 167
Msa0137210 AT4G23630.2 39.303 201 116 2 10 204 73 273 2.32e-51 167
Msa0137210 AT2G46170.1 38.500 200 117 2 10 203 52 251 3.03e-47 156
Msa0137210 AT5G41600.1 38.537 205 116 3 10 204 52 256 6.80e-46 152
Msa0137210 AT3G61560.1 36.500 200 121 2 10 203 52 251 4.27e-42 142
Msa0137210 AT3G61560.2 36.500 200 121 2 10 203 52 251 4.27e-42 142
Msa0137210 AT1G64090.1 35.678 199 118 3 10 198 48 246 6.70e-42 142
Msa0137210 AT1G64090.2 32.870 216 119 4 10 199 48 263 6.19e-38 132
Msa0137210 AT1G68230.1 46.715 137 71 1 15 149 22 158 2.10e-35 122
Msa0137210 AT4G01230.2 35.784 204 120 4 2 197 44 244 6.99e-35 124
Msa0137210 AT3G10260.1 31.633 196 130 1 13 204 50 245 1.13e-34 123
Msa0137210 AT3G10260.2 31.633 196 130 1 13 204 50 245 1.13e-34 123
Msa0137210 AT3G10260.3 31.633 196 130 1 13 204 70 265 2.04e-34 123
Msa0137210 AT4G01230.1 34.804 204 120 5 2 197 44 242 8.15e-32 115
Msa0137210 AT3G61560.3 37.671 146 85 2 10 149 52 197 4.18e-28 105
Msa0137210 AT2G46170.2 37.795 127 73 2 10 130 52 178 4.10e-24 94.7
Msa0137210 AT3G10915.2 25.854 205 146 2 5 203 20 224 2.67e-23 93.6
Msa0137210 AT3G10915.7 25.854 205 146 2 5 203 45 249 2.88e-23 94.0
Msa0137210 AT3G19460.1 28.141 199 123 5 16 206 14 200 5.71e-23 92.0
Msa0137210 AT3G19460.5 28.141 199 123 5 16 206 14 200 5.71e-23 92.0
Msa0137210 AT3G19460.4 28.141 199 123 5 16 206 14 200 5.71e-23 92.0
Msa0137210 AT3G10915.4 25.728 206 146 3 5 203 20 225 9.84e-22 89.4
Msa0137210 AT2G15280.1 24.227 194 143 1 15 204 5 198 1.25e-19 83.2
Msa0137210 AT3G10915.3 24.044 183 135 1 25 203 9 191 3.82e-18 79.0
Msa0137210 AT3G10915.6 24.044 183 135 1 25 203 10 192 4.24e-18 79.0
Msa0137210 AT3G19460.3 25.431 232 121 6 16 206 14 234 2.69e-17 77.8
Msa0137210 AT3G19460.7 25.431 232 121 6 16 206 14 234 2.69e-17 77.8
Msa0137210 AT3G10915.5 23.246 228 146 4 5 203 20 247 8.62e-17 76.6
Msa0137210 AT3G54120.1 28.977 176 116 3 3 172 1 173 4.54e-16 73.6
Msa0137210 AT2G01240.1 29.630 135 93 2 69 202 1 134 7.46e-15 68.9
Msa0137210 AT3G19460.2 24.554 224 117 6 24 206 6 218 1.46e-13 67.4
Msa0137210 AT3G19460.6 24.554 224 117 6 24 206 6 218 1.46e-13 67.4

Find 63 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGCTCATTCTCTTTATT+TGG 0.147832 1_3:-69515958 Msa0137210:CDS
TCCAATCAACCTGGTTTATT+TGG 0.194638 1_3:-69516959 Msa0137210:CDS
GGTACATCACATATATTTAT+TGG 0.212629 1_3:-69517096 Msa0137210:five_prime_UTR
TGTTGATTTGATTAATTTCT+TGG 0.229748 1_3:-69517135 Msa0137210:five_prime_UTR
GAAGAGATTGTTCAACAAAT+TGG 0.245195 1_3:-69515096 Msa0137210:CDS
TCATACTGCTCATACATAAT+TGG 0.299773 1_3:+69515161 None:intergenic
ATCTGCTTGAAGCCAAATTA+TGG 0.307374 1_3:+69514941 None:intergenic
CTATGGATCATGTCTACTAT+TGG 0.332384 1_3:-69515328 Msa0137210:CDS
GGAACGGATTGGCATGACTA+TGG 0.339408 1_3:+69516979 None:intergenic
ACCAAATAAACCAGGTTGAT+TGG 0.341184 1_3:+69516958 None:intergenic
ATGAATCTAACGGTAGAATC+TGG 0.349110 1_3:+69515770 None:intergenic
TTCAGACAATAGCTGGTCTA+TGG 0.360102 1_3:-69515345 Msa0137210:intron
ATTATTCATTTACATGCTTA+AGG 0.367372 1_3:+69514908 None:intergenic
TGGATTCTACAGTTCTCAAT+AGG 0.367654 1_3:-69515076 Msa0137210:CDS
TAGGAATCATTAACTTGGTT+TGG 0.393341 1_3:-69517045 Msa0137210:five_prime_UTR
ATTTCAAAATCATAGATATC+AGG 0.404128 1_3:+69515794 None:intergenic
TTTATTTGGTATAATGCAGC+TGG 0.406398 1_3:-69515944 Msa0137210:CDS
TGAACAATCTCTTCACGTCT+TGG 0.421418 1_3:+69515105 None:intergenic
AAATAAAGAGAATGAGCATA+AGG 0.427457 1_3:+69515960 None:intergenic
GCATGAAACATATCAGTGTT+AGG 0.451172 1_3:-69517064 Msa0137210:five_prime_UTR
ATTGAATTTCAGACAATAGC+TGG 0.451267 1_3:-69515352 Msa0137210:intron
CTTGGTTTCAAAGTCTCCAT+TGG 0.486090 1_3:-69517117 Msa0137210:five_prime_UTR
AATAAAGAGAATGAGCATAA+GGG 0.486688 1_3:+69515961 None:intergenic
AGACCACTTCACGCAGTCCT+TGG 0.495322 1_3:-69516935 Msa0137210:CDS
CCAGGTTGATTGGAACGGAT+TGG 0.508121 1_3:+69516968 None:intergenic
CCACTTCACGCAGTCCTTGG+TGG 0.509588 1_3:-69516932 Msa0137210:CDS
GAAAACAACGGCAGCAATTG+TGG 0.515778 1_3:-69516062 Msa0137210:CDS
ATGCAGCTGGATTAATCACT+TGG 0.517496 1_3:-69515931 Msa0137210:intron
AAAAGTTCAACTTGTTCTTG+AGG 0.520276 1_3:-69515742 Msa0137210:CDS
CAGTTCTCAATAGGATTCCA+AGG 0.520634 1_3:-69515067 Msa0137210:CDS
TGAATCTAACGGTAGAATCT+GGG 0.523175 1_3:+69515771 None:intergenic
AGATCTTAGATTCTTCTTTG+TGG 0.523221 1_3:-69515693 Msa0137210:intron
ACAACGGCAGCAATTGTGGC+TGG 0.528525 1_3:-69516058 Msa0137210:CDS
TTGTATCGAGAGGTAAGGTA+TGG 0.539319 1_3:+69517162 None:intergenic
CCAATCCGTTCCAATCAACC+TGG 0.539807 1_3:-69516968 Msa0137210:CDS
AGTGTTAGGAATCATTAACT+TGG 0.541952 1_3:-69517050 Msa0137210:five_prime_UTR
TTCATTTACATGCTTAAGGT+AGG 0.543763 1_3:+69514912 None:intergenic
ACATAATTGGAAGTGTCACC+AGG 0.546032 1_3:+69515174 None:intergenic
GTGGACTATCTAGCAAGTAA+AGG 0.551485 1_3:-69515131 Msa0137210:CDS
CAATGTATCTTAATCATGTG+TGG 0.554111 1_3:-69517224 Msa0137210:five_prime_UTR
CTTAATCATGTGTGGGCACG+AGG 0.559547 1_3:-69517216 Msa0137210:five_prime_UTR
AAATATATGTGATGTACCAA+TGG 0.562809 1_3:+69517101 None:intergenic
CACACATGATTAAGATACAT+TGG 0.564018 1_3:+69517225 None:intergenic
GAATGAGCATAAGGGCTATG+AGG 0.566119 1_3:+69515969 None:intergenic
GCATAAGGGCTATGAGGATG+TGG 0.569062 1_3:+69515975 None:intergenic
CCACCAAGGACTGCGTGAAG+TGG 0.572676 1_3:+69516932 None:intergenic
ATAAACCAGGTTGATTGGAA+CGG 0.576581 1_3:+69516963 None:intergenic
CAGTTGCTGATATCTTGCTA+TGG 0.577932 1_3:-69516093 Msa0137210:CDS
AATGTATCTTAATCATGTGT+GGG 0.578843 1_3:-69517223 Msa0137210:five_prime_UTR
CGGAGAAGATATAAAATCAT+CGG 0.580814 1_3:+69515021 None:intergenic
GGTTTGGTTTCTCTTTGAAG+TGG 0.581573 1_3:-69516026 Msa0137210:CDS
GATATGTTTCATGCGCATTG+AGG 0.589610 1_3:+69517073 None:intergenic
AACATTTGTATCGAGAGGTA+AGG 0.594348 1_3:+69517157 None:intergenic
AGTTCTCAATAGGATTCCAA+GGG 0.601630 1_3:-69515066 Msa0137210:CDS
GGTAAGGTATGGCTTTAGCA+TGG 0.612064 1_3:+69517173 None:intergenic
CTTCACGCAGTCCTTGGTGG+AGG 0.617691 1_3:-69516929 Msa0137210:CDS
TCAACAACATTTGTATCGAG+AGG 0.636340 1_3:+69517152 None:intergenic
GTATGAGCAGTATGAACATG+AGG 0.689790 1_3:-69515153 Msa0137210:CDS
TCTTACTCTTTCCTCCACCA+AGG 0.691240 1_3:+69516918 None:intergenic
AGTGGTCTACCAAATAAACC+AGG 0.692119 1_3:+69516950 None:intergenic
ATGGAAAGACATGAAAACAA+CGG 0.698215 1_3:-69516074 Msa0137210:CDS
TGAGCAGTATGAACATGAGG+TGG 0.701805 1_3:-69515150 Msa0137210:CDS
GTTCTCAATAGGATTCCAAG+GGG 0.759037 1_3:-69515065 Msa0137210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATATATTTAGATTGA+GGG + chr1_3:69515332-69515351 None:intergenic 10.0%
!! ATAAAAATATATTTAGATTG+AGG + chr1_3:69515333-69515352 None:intergenic 10.0%
!!! AATAACTTTTAAAAATAAGA+GGG + chr1_3:69515552-69515571 None:intergenic 10.0%
!!! TAATAACTTTTAAAAATAAG+AGG + chr1_3:69515553-69515572 None:intergenic 10.0%
!!! ACATATTCATAATTTTTATA+AGG + chr1_3:69516210-69516229 None:intergenic 10.0%
!! TATAGTCAAAAAAATTTATA+GGG + chr1_3:69516553-69516572 None:intergenic 10.0%
!! ATATAGTCAAAAAAATTTAT+AGG + chr1_3:69516554-69516573 None:intergenic 10.0%
!! AAAAATTGATAAAAACTTAT+AGG - chr1_3:69516638-69516657 Msa0137210:intron 10.0%
!! TAAAAATATATTTAGATTGA+GGG + chr1_3:69515332-69515351 None:intergenic 10.0%
!! ATAAAAATATATTTAGATTG+AGG + chr1_3:69515333-69515352 None:intergenic 10.0%
!!! AATAACTTTTAAAAATAAGA+GGG + chr1_3:69515552-69515571 None:intergenic 10.0%
!!! TAATAACTTTTAAAAATAAG+AGG + chr1_3:69515553-69515572 None:intergenic 10.0%
!!! ACATATTCATAATTTTTATA+AGG + chr1_3:69516210-69516229 None:intergenic 10.0%
!! TATAGTCAAAAAAATTTATA+GGG + chr1_3:69516553-69516572 None:intergenic 10.0%
!! ATATAGTCAAAAAAATTTAT+AGG + chr1_3:69516554-69516573 None:intergenic 10.0%
!! AAAAATTGATAAAAACTTAT+AGG - chr1_3:69516638-69516657 Msa0137210:intron 10.0%
!!! TTTGATAGTAAATATCTAAT+AGG - chr1_3:69515270-69515289 Msa0137210:intron 15.0%
!!! TTTTATCAAAAAAATGTAAG+TGG - chr1_3:69515347-69515366 Msa0137210:intron 15.0%
!! TTTATCAAAAAAATGTAAGT+GGG - chr1_3:69515348-69515367 Msa0137210:intron 15.0%
!!! AAAAAATAATTTTTTGTCGA+GGG + chr1_3:69515458-69515477 None:intergenic 15.0%
!!! TAAAAAATAATTTTTTGTCG+AGG + chr1_3:69515459-69515478 None:intergenic 15.0%
!!! ATAACTTTTAAAAATAAGAG+GGG + chr1_3:69515551-69515570 None:intergenic 15.0%
!! TCCTAAAAATGAAAATTAAT+AGG + chr1_3:69515602-69515621 None:intergenic 15.0%
!!! TTTTAAAACGTTTATTTCAT+TGG - chr1_3:69515692-69515711 Msa0137210:intron 15.0%
!!! GTTCATACAAAATTTTATTT+TGG - chr1_3:69515850-69515869 Msa0137210:intron 15.0%
!!! TATATTTTATTTAGTACATG+TGG + chr1_3:69515957-69515976 None:intergenic 15.0%
!! AAATAAGATAGCATAAATTA+TGG - chr1_3:69516666-69516685 Msa0137210:intron 15.0%
!! AATAAGATAGCATAAATTAT+GGG - chr1_3:69516667-69516686 Msa0137210:intron 15.0%
!! AACAAATTAATTCAAATCAA+AGG + chr1_3:69516712-69516731 None:intergenic 15.0%
!!! TTTGATAGTAAATATCTAAT+AGG - chr1_3:69515270-69515289 Msa0137210:intron 15.0%
!!! TTTTATCAAAAAAATGTAAG+TGG - chr1_3:69515347-69515366 Msa0137210:intron 15.0%
!! TTTATCAAAAAAATGTAAGT+GGG - chr1_3:69515348-69515367 Msa0137210:intron 15.0%
!!! AAAAAATAATTTTTTGTCGA+GGG + chr1_3:69515458-69515477 None:intergenic 15.0%
!!! TAAAAAATAATTTTTTGTCG+AGG + chr1_3:69515459-69515478 None:intergenic 15.0%
!!! ATAACTTTTAAAAATAAGAG+GGG + chr1_3:69515551-69515570 None:intergenic 15.0%
!! TCCTAAAAATGAAAATTAAT+AGG + chr1_3:69515602-69515621 None:intergenic 15.0%
!!! TTTTAAAACGTTTATTTCAT+TGG - chr1_3:69515692-69515711 Msa0137210:intron 15.0%
!!! GTTCATACAAAATTTTATTT+TGG - chr1_3:69515850-69515869 Msa0137210:intron 15.0%
!!! TATATTTTATTTAGTACATG+TGG + chr1_3:69515957-69515976 None:intergenic 15.0%
!! AAATAAGATAGCATAAATTA+TGG - chr1_3:69516666-69516685 Msa0137210:intron 15.0%
!! AATAAGATAGCATAAATTAT+GGG - chr1_3:69516667-69516686 Msa0137210:intron 15.0%
!! AACAAATTAATTCAAATCAA+AGG + chr1_3:69516712-69516731 None:intergenic 15.0%
!!! TGTTGATTTGATTAATTTCT+TGG - chr1_3:69514965-69514984 Msa0137210:three_prime_UTR 20.0%
!! ATAGTAAATATCTAATAGGT+TGG - chr1_3:69515274-69515293 Msa0137210:intron 20.0%
!!! ATTTTACTTTTATATATGGG+TGG - chr1_3:69515380-69515399 Msa0137210:intron 20.0%
!!! GCCTATTAATTTTCATTTTT+AGG - chr1_3:69515598-69515617 Msa0137210:intron 20.0%
!! ATTATTAAATCTACATCATG+TGG + chr1_3:69515764-69515783 None:intergenic 20.0%
!!! TACAAAATTTTATTTTGGCT+TGG - chr1_3:69515855-69515874 Msa0137210:intron 20.0%
!! ATTTCAAAATCATAGATATC+AGG + chr1_3:69516309-69516328 None:intergenic 20.0%
!!! CTTTTTATGAATGAATCTAA+CGG + chr1_3:69516343-69516362 None:intergenic 20.0%
!!! AAATTTTATGACATTTCAAC+TGG - chr1_3:69516381-69516400 Msa0137210:intron 20.0%
!!! AATTTTATGACATTTCAACT+GGG - chr1_3:69516382-69516401 Msa0137210:intron 20.0%
!! AATTCAGAAAGAAAAGAAAA+TGG + chr1_3:69516480-69516499 None:intergenic 20.0%
!!! GCATCTTTTATAAAAATAGA+GGG - chr1_3:69516581-69516600 Msa0137210:intron 20.0%
!! ATAAGATAGCATAAATTATG+GGG - chr1_3:69516668-69516687 Msa0137210:intron 20.0%
!! ATTATTCATTTACATGCTTA+AGG + chr1_3:69517195-69517214 None:intergenic 20.0%
!!! TGTTGATTTGATTAATTTCT+TGG - chr1_3:69514965-69514984 Msa0137210:three_prime_UTR 20.0%
!! ATAGTAAATATCTAATAGGT+TGG - chr1_3:69515274-69515293 Msa0137210:intron 20.0%
!!! ATTTTACTTTTATATATGGG+TGG - chr1_3:69515380-69515399 Msa0137210:intron 20.0%
!!! GCCTATTAATTTTCATTTTT+AGG - chr1_3:69515598-69515617 Msa0137210:intron 20.0%
!! ATTATTAAATCTACATCATG+TGG + chr1_3:69515764-69515783 None:intergenic 20.0%
!!! TACAAAATTTTATTTTGGCT+TGG - chr1_3:69515855-69515874 Msa0137210:intron 20.0%
!! ATTTCAAAATCATAGATATC+AGG + chr1_3:69516309-69516328 None:intergenic 20.0%
!!! CTTTTTATGAATGAATCTAA+CGG + chr1_3:69516343-69516362 None:intergenic 20.0%
!!! AAATTTTATGACATTTCAAC+TGG - chr1_3:69516381-69516400 Msa0137210:intron 20.0%
!!! AATTTTATGACATTTCAACT+GGG - chr1_3:69516382-69516401 Msa0137210:intron 20.0%
!! AATTCAGAAAGAAAAGAAAA+TGG + chr1_3:69516480-69516499 None:intergenic 20.0%
!!! GCATCTTTTATAAAAATAGA+GGG - chr1_3:69516581-69516600 Msa0137210:intron 20.0%
!! ATAAGATAGCATAAATTATG+GGG - chr1_3:69516668-69516687 Msa0137210:intron 20.0%
!! ATTATTCATTTACATGCTTA+AGG + chr1_3:69517195-69517214 None:intergenic 20.0%
! AAATATATGTGATGTACCAA+TGG + chr1_3:69515002-69515021 None:intergenic 25.0%
! GGTACATCACATATATTTAT+TGG - chr1_3:69515004-69515023 Msa0137210:three_prime_UTR 25.0%
! AAATATATTTAGATTGAGGG+AGG + chr1_3:69515329-69515348 None:intergenic 25.0%
! CCAAAACAAGATTAAATGTA+TGG + chr1_3:69515528-69515547 None:intergenic 25.0%
!!! CCATACATTTAATCTTGTTT+TGG - chr1_3:69515525-69515544 Msa0137210:intron 25.0%
! TCATTGGTAGAAATAGAAAT+AGG - chr1_3:69515708-69515727 Msa0137210:CDS 25.0%
! AATAAAGAGAATGAGCATAA+GGG + chr1_3:69516142-69516161 None:intergenic 25.0%
! AAATAAAGAGAATGAGCATA+AGG + chr1_3:69516143-69516162 None:intergenic 25.0%
! TTATGCTCATTCTCTTTATT+TGG - chr1_3:69516142-69516161 Msa0137210:intron 25.0%
! AAAAATAAGGCTTCTGAATA+GGG + chr1_3:69516238-69516257 None:intergenic 25.0%
!!! AGCCTTATTTTTGTAACATT+TGG - chr1_3:69516246-69516265 Msa0137210:intron 25.0%
! CACCAAATGTTACAAAAATA+AGG + chr1_3:69516251-69516270 None:intergenic 25.0%
! AGTCAAAAAAATTTATAGGG+AGG + chr1_3:69516550-69516569 None:intergenic 25.0%
!! CGCATCTTTTATAAAAATAG+AGG - chr1_3:69516580-69516599 Msa0137210:intron 25.0%
! AAATGTACCTGTGTTTAAAA+AGG - chr1_3:69516607-69516626 Msa0137210:intron 25.0%
! AAATATATGTGATGTACCAA+TGG + chr1_3:69515002-69515021 None:intergenic 25.0%
! GGTACATCACATATATTTAT+TGG - chr1_3:69515004-69515023 Msa0137210:three_prime_UTR 25.0%
! AAATATATTTAGATTGAGGG+AGG + chr1_3:69515329-69515348 None:intergenic 25.0%
! CCAAAACAAGATTAAATGTA+TGG + chr1_3:69515528-69515547 None:intergenic 25.0%
!!! CCATACATTTAATCTTGTTT+TGG - chr1_3:69515525-69515544 Msa0137210:intron 25.0%
! TCATTGGTAGAAATAGAAAT+AGG - chr1_3:69515708-69515727 Msa0137210:CDS 25.0%
! AATAAAGAGAATGAGCATAA+GGG + chr1_3:69516142-69516161 None:intergenic 25.0%
! AAATAAAGAGAATGAGCATA+AGG + chr1_3:69516143-69516162 None:intergenic 25.0%
! TTATGCTCATTCTCTTTATT+TGG - chr1_3:69516142-69516161 Msa0137210:intron 25.0%
! AAAAATAAGGCTTCTGAATA+GGG + chr1_3:69516238-69516257 None:intergenic 25.0%
!!! AGCCTTATTTTTGTAACATT+TGG - chr1_3:69516246-69516265 Msa0137210:intron 25.0%
! CACCAAATGTTACAAAAATA+AGG + chr1_3:69516251-69516270 None:intergenic 25.0%
! AGTCAAAAAAATTTATAGGG+AGG + chr1_3:69516550-69516569 None:intergenic 25.0%
!! CGCATCTTTTATAAAAATAG+AGG - chr1_3:69516580-69516599 Msa0137210:intron 25.0%
! AAATGTACCTGTGTTTAAAA+AGG - chr1_3:69516607-69516626 Msa0137210:intron 25.0%
AGTGTTAGGAATCATTAACT+TGG - chr1_3:69515050-69515069 Msa0137210:CDS 30.0%
! TAGGAATCATTAACTTGGTT+TGG - chr1_3:69515055-69515074 Msa0137210:CDS 30.0%
! GTAAATATCTAATAGGTTGG+TGG - chr1_3:69515277-69515296 Msa0137210:intron 30.0%
! TACTTTTATATATGGGTGGT+TGG - chr1_3:69515384-69515403 Msa0137210:intron 30.0%
!! ATTTTCATTTTTAGGAGTCG+TGG - chr1_3:69515606-69515625 Msa0137210:intron 30.0%
CTTCTTAAATAAAGACGAGA+CGG - chr1_3:69515734-69515753 Msa0137210:CDS 30.0%
ATTAAGAAGAGTTCACTCTA+AGG + chr1_3:69515788-69515807 None:intergenic 30.0%
ATGAACTAACCCACATAAAT+TGG + chr1_3:69515836-69515855 None:intergenic 30.0%
!!! GTGGCTTTTTTTCTAAAACT+TGG + chr1_3:69515938-69515957 None:intergenic 30.0%
TCAGAACAATCATATCACTA+AGG + chr1_3:69515982-69516001 None:intergenic 30.0%
ATGGAAAGACATGAAAACAA+CGG - chr1_3:69516026-69516045 Msa0137210:CDS 30.0%
TTTATTTGGTATAATGCAGC+TGG - chr1_3:69516156-69516175 Msa0137210:intron 30.0%
CAAAAATAAGGCTTCTGAAT+AGG + chr1_3:69516239-69516258 None:intergenic 30.0%
TTATTTATGTGTTGCATTGC+AGG - chr1_3:69516277-69516296 Msa0137210:intron 30.0%
! AAAAGTTCAACTTGTTCTTG+AGG - chr1_3:69516358-69516377 Msa0137210:intron 30.0%
AGATCTTAGATTCTTCTTTG+TGG - chr1_3:69516407-69516426 Msa0137210:intron 30.0%
GAGGTGAGAATAATTGAAAA+TGG + chr1_3:69516447-69516466 None:intergenic 30.0%
ATTGAATTTCAGACAATAGC+TGG - chr1_3:69516748-69516767 Msa0137210:intron 30.0%
TCATACTGCTCATACATAAT+TGG + chr1_3:69516942-69516961 None:intergenic 30.0%
GAAGAGATTGTTCAACAAAT+TGG - chr1_3:69517004-69517023 Msa0137210:five_prime_UTR 30.0%
CGGAGAAGATATAAAATCAT+CGG + chr1_3:69517082-69517101 None:intergenic 30.0%
!!! ATGTTTTATTTCATGCGTGA+CGG + chr1_3:69517102-69517121 None:intergenic 30.0%
TTCATTTACATGCTTAAGGT+AGG + chr1_3:69517191-69517210 None:intergenic 30.0%
AGTGTTAGGAATCATTAACT+TGG - chr1_3:69515050-69515069 Msa0137210:CDS 30.0%
! TAGGAATCATTAACTTGGTT+TGG - chr1_3:69515055-69515074 Msa0137210:CDS 30.0%
! GTAAATATCTAATAGGTTGG+TGG - chr1_3:69515277-69515296 Msa0137210:intron 30.0%
! TACTTTTATATATGGGTGGT+TGG - chr1_3:69515384-69515403 Msa0137210:intron 30.0%
!! ATTTTCATTTTTAGGAGTCG+TGG - chr1_3:69515606-69515625 Msa0137210:intron 30.0%
CTTCTTAAATAAAGACGAGA+CGG - chr1_3:69515734-69515753 Msa0137210:CDS 30.0%
ATTAAGAAGAGTTCACTCTA+AGG + chr1_3:69515788-69515807 None:intergenic 30.0%
ATGAACTAACCCACATAAAT+TGG + chr1_3:69515836-69515855 None:intergenic 30.0%
!!! GTGGCTTTTTTTCTAAAACT+TGG + chr1_3:69515938-69515957 None:intergenic 30.0%
TCAGAACAATCATATCACTA+AGG + chr1_3:69515982-69516001 None:intergenic 30.0%
ATGGAAAGACATGAAAACAA+CGG - chr1_3:69516026-69516045 Msa0137210:CDS 30.0%
TTTATTTGGTATAATGCAGC+TGG - chr1_3:69516156-69516175 Msa0137210:intron 30.0%
CAAAAATAAGGCTTCTGAAT+AGG + chr1_3:69516239-69516258 None:intergenic 30.0%
TTATTTATGTGTTGCATTGC+AGG - chr1_3:69516277-69516296 Msa0137210:intron 30.0%
! AAAAGTTCAACTTGTTCTTG+AGG - chr1_3:69516358-69516377 Msa0137210:intron 30.0%
AGATCTTAGATTCTTCTTTG+TGG - chr1_3:69516407-69516426 Msa0137210:intron 30.0%
GAGGTGAGAATAATTGAAAA+TGG + chr1_3:69516447-69516466 None:intergenic 30.0%
ATTGAATTTCAGACAATAGC+TGG - chr1_3:69516748-69516767 Msa0137210:intron 30.0%
TCATACTGCTCATACATAAT+TGG + chr1_3:69516942-69516961 None:intergenic 30.0%
GAAGAGATTGTTCAACAAAT+TGG - chr1_3:69517004-69517023 Msa0137210:five_prime_UTR 30.0%
CGGAGAAGATATAAAATCAT+CGG + chr1_3:69517082-69517101 None:intergenic 30.0%
!!! ATGTTTTATTTCATGCGTGA+CGG + chr1_3:69517102-69517121 None:intergenic 30.0%
TTCATTTACATGCTTAAGGT+AGG + chr1_3:69517191-69517210 None:intergenic 30.0%
AACATTTGTATCGAGAGGTA+AGG + chr1_3:69514946-69514965 None:intergenic 35.0%
TCAACAACATTTGTATCGAG+AGG + chr1_3:69514951-69514970 None:intergenic 35.0%
GCATGAAACATATCAGTGTT+AGG - chr1_3:69515036-69515055 Msa0137210:exon 35.0%
!! ATAAACCAGGTTGATTGGAA+CGG + chr1_3:69515140-69515159 None:intergenic 35.0%
TCCAATCAACCTGGTTTATT+TGG - chr1_3:69515141-69515160 Msa0137210:CDS 35.0%
!! ACCAAATAAACCAGGTTGAT+TGG + chr1_3:69515145-69515164 None:intergenic 35.0%
GCATGAAAACGTGATACAAA+AGG + chr1_3:69515225-69515244 None:intergenic 35.0%
! AGGGAGGTACATATTGTATA+AGG + chr1_3:69515313-69515332 None:intergenic 35.0%
AGGCAAATATCTTTCCACTA+GGG + chr1_3:69515582-69515601 None:intergenic 35.0%
TAGGCAAATATCTTTCCACT+AGG + chr1_3:69515583-69515602 None:intergenic 35.0%
GTGTCAAGTTTGAATTCTCT+TGG - chr1_3:69515808-69515827 Msa0137210:intron 35.0%
TCTCTTGGTACCAATTTATG+TGG - chr1_3:69515823-69515842 Msa0137210:intron 35.0%
CTCTTGGTACCAATTTATGT+GGG - chr1_3:69515824-69515843 Msa0137210:intron 35.0%
! AATTGTGGCTGGATTTTCAA+TGG - chr1_3:69516053-69516072 Msa0137210:CDS 35.0%
TGAATCTAACGGTAGAATCT+GGG + chr1_3:69516332-69516351 None:intergenic 35.0%
ATGAATCTAACGGTAGAATC+TGG + chr1_3:69516333-69516352 None:intergenic 35.0%
AGAAAAGAAAATGGTCTCAG+TGG + chr1_3:69516471-69516490 None:intergenic 35.0%
GTACCTGTGTTTAAAAAGGT+AGG - chr1_3:69516611-69516630 Msa0137210:intron 35.0%
! GTTCCTACCTTTTTAAACAC+AGG + chr1_3:69516617-69516636 None:intergenic 35.0%
CTATGGATCATGTCTACTAT+TGG - chr1_3:69516772-69516791 Msa0137210:intron 35.0%
CAAGAATACACAACATAGCA+TGG + chr1_3:69516891-69516910 None:intergenic 35.0%
TGGATTCTACAGTTCTCAAT+AGG - chr1_3:69517024-69517043 Msa0137210:five_prime_UTR 35.0%
AGTTCTCAATAGGATTCCAA+GGG - chr1_3:69517034-69517053 Msa0137210:five_prime_UTR 35.0%
!! CATCTGCTTTTGCCATAATT+TGG - chr1_3:69517147-69517166 Msa0137210:five_prime_UTR 35.0%
ATCTGCTTGAAGCCAAATTA+TGG + chr1_3:69517162-69517181 None:intergenic 35.0%
AACATTTGTATCGAGAGGTA+AGG + chr1_3:69514946-69514965 None:intergenic 35.0%
TCAACAACATTTGTATCGAG+AGG + chr1_3:69514951-69514970 None:intergenic 35.0%
GCATGAAACATATCAGTGTT+AGG - chr1_3:69515036-69515055 Msa0137210:exon 35.0%
!! ATAAACCAGGTTGATTGGAA+CGG + chr1_3:69515140-69515159 None:intergenic 35.0%
TCCAATCAACCTGGTTTATT+TGG - chr1_3:69515141-69515160 Msa0137210:CDS 35.0%
!! ACCAAATAAACCAGGTTGAT+TGG + chr1_3:69515145-69515164 None:intergenic 35.0%
GCATGAAAACGTGATACAAA+AGG + chr1_3:69515225-69515244 None:intergenic 35.0%
! AGGGAGGTACATATTGTATA+AGG + chr1_3:69515313-69515332 None:intergenic 35.0%
AGGCAAATATCTTTCCACTA+GGG + chr1_3:69515582-69515601 None:intergenic 35.0%
TAGGCAAATATCTTTCCACT+AGG + chr1_3:69515583-69515602 None:intergenic 35.0%
GTGTCAAGTTTGAATTCTCT+TGG - chr1_3:69515808-69515827 Msa0137210:intron 35.0%
TCTCTTGGTACCAATTTATG+TGG - chr1_3:69515823-69515842 Msa0137210:intron 35.0%
CTCTTGGTACCAATTTATGT+GGG - chr1_3:69515824-69515843 Msa0137210:intron 35.0%
! AATTGTGGCTGGATTTTCAA+TGG - chr1_3:69516053-69516072 Msa0137210:CDS 35.0%
TGAATCTAACGGTAGAATCT+GGG + chr1_3:69516332-69516351 None:intergenic 35.0%
ATGAATCTAACGGTAGAATC+TGG + chr1_3:69516333-69516352 None:intergenic 35.0%
AGAAAAGAAAATGGTCTCAG+TGG + chr1_3:69516471-69516490 None:intergenic 35.0%
GTACCTGTGTTTAAAAAGGT+AGG - chr1_3:69516611-69516630 Msa0137210:intron 35.0%
! GTTCCTACCTTTTTAAACAC+AGG + chr1_3:69516617-69516636 None:intergenic 35.0%
CTATGGATCATGTCTACTAT+TGG - chr1_3:69516772-69516791 Msa0137210:intron 35.0%
CAAGAATACACAACATAGCA+TGG + chr1_3:69516891-69516910 None:intergenic 35.0%
TGGATTCTACAGTTCTCAAT+AGG - chr1_3:69517024-69517043 Msa0137210:five_prime_UTR 35.0%
AGTTCTCAATAGGATTCCAA+GGG - chr1_3:69517034-69517053 Msa0137210:five_prime_UTR 35.0%
!! CATCTGCTTTTGCCATAATT+TGG - chr1_3:69517147-69517166 Msa0137210:five_prime_UTR 35.0%
ATCTGCTTGAAGCCAAATTA+TGG + chr1_3:69517162-69517181 None:intergenic 35.0%
TTGTATCGAGAGGTAAGGTA+TGG + chr1_3:69514941-69514960 None:intergenic 40.0%
CTTGGTTTCAAAGTCTCCAT+TGG - chr1_3:69514983-69515002 Msa0137210:three_prime_UTR 40.0%
GATATGTTTCATGCGCATTG+AGG + chr1_3:69515030-69515049 None:intergenic 40.0%
AGTGGTCTACCAAATAAACC+AGG + chr1_3:69515153-69515172 None:intergenic 40.0%
AAATATCTTTCCACTAGGGC+TGG + chr1_3:69515578-69515597 None:intergenic 40.0%
! TACCTCGGTTTAGTCAGTTT+TGG - chr1_3:69515903-69515922 Msa0137210:intron 40.0%
!!! GGTTTAGTCAGTTTTGGAGT+CGG - chr1_3:69515909-69515928 Msa0137210:intron 40.0%
CAGTTGCTGATATCTTGCTA+TGG - chr1_3:69516007-69516026 Msa0137210:CDS 40.0%
! TGGCTGGATTTTCAATGGTT+TGG - chr1_3:69516058-69516077 Msa0137210:CDS 40.0%
! GGTTTGGTTTCTCTTTGAAG+TGG - chr1_3:69516074-69516093 Msa0137210:CDS 40.0%
ATGCAGCTGGATTAATCACT+TGG - chr1_3:69516169-69516188 Msa0137210:intron 40.0%
! TTCAGACAATAGCTGGTCTA+TGG - chr1_3:69516755-69516774 Msa0137210:intron 40.0%
! TTGTACAGCATTTTTGTGCC+TGG - chr1_3:69516908-69516927 Msa0137210:intron 40.0%
!! ACATAATTGGAAGTGTCACC+AGG + chr1_3:69516929-69516948 None:intergenic 40.0%
GTATGAGCAGTATGAACATG+AGG - chr1_3:69516947-69516966 Msa0137210:CDS 40.0%
! GTGGACTATCTAGCAAGTAA+AGG - chr1_3:69516969-69516988 Msa0137210:CDS 40.0%
TGAACAATCTCTTCACGTCT+TGG + chr1_3:69516998-69517017 None:intergenic 40.0%
CAGTTCTCAATAGGATTCCA+AGG - chr1_3:69517033-69517052 Msa0137210:five_prime_UTR 40.0%
GTTCTCAATAGGATTCCAAG+GGG - chr1_3:69517035-69517054 Msa0137210:five_prime_UTR 40.0%
! CGGTACTTCTTTTCTTTCAC+AGG + chr1_3:69517062-69517081 None:intergenic 40.0%
TTGTATCGAGAGGTAAGGTA+TGG + chr1_3:69514941-69514960 None:intergenic 40.0%
CTTGGTTTCAAAGTCTCCAT+TGG - chr1_3:69514983-69515002 Msa0137210:three_prime_UTR 40.0%
GATATGTTTCATGCGCATTG+AGG + chr1_3:69515030-69515049 None:intergenic 40.0%
AGTGGTCTACCAAATAAACC+AGG + chr1_3:69515153-69515172 None:intergenic 40.0%
AAATATCTTTCCACTAGGGC+TGG + chr1_3:69515578-69515597 None:intergenic 40.0%
! TACCTCGGTTTAGTCAGTTT+TGG - chr1_3:69515903-69515922 Msa0137210:intron 40.0%
!!! GGTTTAGTCAGTTTTGGAGT+CGG - chr1_3:69515909-69515928 Msa0137210:intron 40.0%
CAGTTGCTGATATCTTGCTA+TGG - chr1_3:69516007-69516026 Msa0137210:CDS 40.0%
! TGGCTGGATTTTCAATGGTT+TGG - chr1_3:69516058-69516077 Msa0137210:CDS 40.0%
! GGTTTGGTTTCTCTTTGAAG+TGG - chr1_3:69516074-69516093 Msa0137210:CDS 40.0%
ATGCAGCTGGATTAATCACT+TGG - chr1_3:69516169-69516188 Msa0137210:intron 40.0%
! TTCAGACAATAGCTGGTCTA+TGG - chr1_3:69516755-69516774 Msa0137210:intron 40.0%
! TTGTACAGCATTTTTGTGCC+TGG - chr1_3:69516908-69516927 Msa0137210:intron 40.0%
!! ACATAATTGGAAGTGTCACC+AGG + chr1_3:69516929-69516948 None:intergenic 40.0%
GTATGAGCAGTATGAACATG+AGG - chr1_3:69516947-69516966 Msa0137210:CDS 40.0%
! GTGGACTATCTAGCAAGTAA+AGG - chr1_3:69516969-69516988 Msa0137210:CDS 40.0%
TGAACAATCTCTTCACGTCT+TGG + chr1_3:69516998-69517017 None:intergenic 40.0%
CAGTTCTCAATAGGATTCCA+AGG - chr1_3:69517033-69517052 Msa0137210:five_prime_UTR 40.0%
GTTCTCAATAGGATTCCAAG+GGG - chr1_3:69517035-69517054 Msa0137210:five_prime_UTR 40.0%
! CGGTACTTCTTTTCTTTCAC+AGG + chr1_3:69517062-69517081 None:intergenic 40.0%
!! GGTAAGGTATGGCTTTAGCA+TGG + chr1_3:69514930-69514949 None:intergenic 45.0%
TCTTACTCTTTCCTCCACCA+AGG + chr1_3:69515185-69515204 None:intergenic 45.0%
TATATGGGTGGTTGGAAAGC+AGG - chr1_3:69515392-69515411 Msa0137210:intron 45.0%
!! GGGATTTAAAGCGAGGGTTT+TGG + chr1_3:69515438-69515457 None:intergenic 45.0%
! TGTCGAGGGATTTAAAGCGA+GGG + chr1_3:69515444-69515463 None:intergenic 45.0%
! TTGTCGAGGGATTTAAAGCG+AGG + chr1_3:69515445-69515464 None:intergenic 45.0%
AGTTATTAGACCAGCCCTAG+TGG - chr1_3:69515565-69515584 Msa0137210:intron 45.0%
CAATCCATTGTCAGCTTGCA+GGG + chr1_3:69515882-69515901 None:intergenic 45.0%
!! CTGACAATGGATTGGTACCT+CGG - chr1_3:69515888-69515907 Msa0137210:intron 45.0%
CTCCAAAACTGACTAAACCG+AGG + chr1_3:69515908-69515927 None:intergenic 45.0%
GAAAACAACGGCAGCAATTG+TGG - chr1_3:69516038-69516057 Msa0137210:CDS 45.0%
GAATGAGCATAAGGGCTATG+AGG + chr1_3:69516134-69516153 None:intergenic 45.0%
AGAAAATGGTCTCAGTGGAG+AGG + chr1_3:69516466-69516485 None:intergenic 45.0%
TGAGCAGTATGAACATGAGG+TGG - chr1_3:69516950-69516969 Msa0137210:CDS 45.0%
! TTTTCTTTCACAGGTCCCCT+TGG + chr1_3:69517053-69517072 None:intergenic 45.0%
!! GGTAAGGTATGGCTTTAGCA+TGG + chr1_3:69514930-69514949 None:intergenic 45.0%
TCTTACTCTTTCCTCCACCA+AGG + chr1_3:69515185-69515204 None:intergenic 45.0%
TATATGGGTGGTTGGAAAGC+AGG - chr1_3:69515392-69515411 Msa0137210:intron 45.0%
!! GGGATTTAAAGCGAGGGTTT+TGG + chr1_3:69515438-69515457 None:intergenic 45.0%
! TGTCGAGGGATTTAAAGCGA+GGG + chr1_3:69515444-69515463 None:intergenic 45.0%
! TTGTCGAGGGATTTAAAGCG+AGG + chr1_3:69515445-69515464 None:intergenic 45.0%
AGTTATTAGACCAGCCCTAG+TGG - chr1_3:69515565-69515584 Msa0137210:intron 45.0%
CAATCCATTGTCAGCTTGCA+GGG + chr1_3:69515882-69515901 None:intergenic 45.0%
!! CTGACAATGGATTGGTACCT+CGG - chr1_3:69515888-69515907 Msa0137210:intron 45.0%
CTCCAAAACTGACTAAACCG+AGG + chr1_3:69515908-69515927 None:intergenic 45.0%
GAAAACAACGGCAGCAATTG+TGG - chr1_3:69516038-69516057 Msa0137210:CDS 45.0%
GAATGAGCATAAGGGCTATG+AGG + chr1_3:69516134-69516153 None:intergenic 45.0%
AGAAAATGGTCTCAGTGGAG+AGG + chr1_3:69516466-69516485 None:intergenic 45.0%
TGAGCAGTATGAACATGAGG+TGG - chr1_3:69516950-69516969 Msa0137210:CDS 45.0%
! TTTTCTTTCACAGGTCCCCT+TGG + chr1_3:69517053-69517072 None:intergenic 45.0%
!!! TAAAATTTTACTTTTATATA+TGG - chr1_3:69515376-69515395 Msa0137210:intron 5.0%
!!! AAAATTTTACTTTTATATAT+GGG - chr1_3:69515377-69515396 Msa0137210:intron 5.0%
!!! AATAATAAAATTAATTTGTT+TGG + chr1_3:69516841-69516860 None:intergenic 5.0%
!!! ACAAATTAATTTTATTATTT+AGG - chr1_3:69516842-69516861 Msa0137210:intron 5.0%
!! CATATTAATAATTAATAATA+AGG + chr1_3:69516868-69516887 None:intergenic 5.0%
!!! TAAAATTTTACTTTTATATA+TGG - chr1_3:69515376-69515395 Msa0137210:intron 5.0%
!!! AAAATTTTACTTTTATATAT+GGG - chr1_3:69515377-69515396 Msa0137210:intron 5.0%
!!! AATAATAAAATTAATTTGTT+TGG + chr1_3:69516841-69516860 None:intergenic 5.0%
!!! ACAAATTAATTTTATTATTT+AGG - chr1_3:69516842-69516861 Msa0137210:intron 5.0%
!! CATATTAATAATTAATAATA+AGG + chr1_3:69516868-69516887 None:intergenic 5.0%
CTTAATCATGTGTGGGCACG+AGG - chr1_3:69514884-69514903 Msa0137210:three_prime_UTR 50.0%
!! GGAACGGATTGGCATGACTA+TGG + chr1_3:69515124-69515143 None:intergenic 50.0%
!! CCAGGTTGATTGGAACGGAT+TGG + chr1_3:69515135-69515154 None:intergenic 50.0%
CCAATCCGTTCCAATCAACC+TGG - chr1_3:69515132-69515151 Msa0137210:CDS 50.0%
TTGGAAAGCAGGTCGGTCTA+AGG - chr1_3:69515403-69515422 Msa0137210:intron 50.0%
TGGAAAGCAGGTCGGTCTAA+GGG - chr1_3:69515404-69515423 Msa0137210:intron 50.0%
CCAATCCATTGTCAGCTTGC+AGG + chr1_3:69515883-69515902 None:intergenic 50.0%
CCTGCAAGCTGACAATGGAT+TGG - chr1_3:69515880-69515899 Msa0137210:intron 50.0%
GCATAAGGGCTATGAGGATG+TGG + chr1_3:69516128-69516147 None:intergenic 50.0%
CTTAATCATGTGTGGGCACG+AGG - chr1_3:69514884-69514903 Msa0137210:three_prime_UTR 50.0%
!! GGAACGGATTGGCATGACTA+TGG + chr1_3:69515124-69515143 None:intergenic 50.0%
!! CCAGGTTGATTGGAACGGAT+TGG + chr1_3:69515135-69515154 None:intergenic 50.0%
CCAATCCGTTCCAATCAACC+TGG - chr1_3:69515132-69515151 Msa0137210:CDS 50.0%
TTGGAAAGCAGGTCGGTCTA+AGG - chr1_3:69515403-69515422 Msa0137210:intron 50.0%
TGGAAAGCAGGTCGGTCTAA+GGG - chr1_3:69515404-69515423 Msa0137210:intron 50.0%
CCAATCCATTGTCAGCTTGC+AGG + chr1_3:69515883-69515902 None:intergenic 50.0%
CCTGCAAGCTGACAATGGAT+TGG - chr1_3:69515880-69515899 Msa0137210:intron 50.0%
GCATAAGGGCTATGAGGATG+TGG + chr1_3:69516128-69516147 None:intergenic 50.0%
AGACCACTTCACGCAGTCCT+TGG - chr1_3:69515165-69515184 Msa0137210:CDS 55.0%
TGGGTGGTTGGAAAGCAGGT+CGG - chr1_3:69515396-69515415 Msa0137210:intron 55.0%
AGCAGGTCGGTCTAAGGGTA+AGG - chr1_3:69515409-69515428 Msa0137210:intron 55.0%
TGGACCCTGCAAGCTGACAA+TGG - chr1_3:69515875-69515894 Msa0137210:intron 55.0%
ACAACGGCAGCAATTGTGGC+TGG - chr1_3:69516042-69516061 Msa0137210:CDS 55.0%
AGACCACTTCACGCAGTCCT+TGG - chr1_3:69515165-69515184 Msa0137210:CDS 55.0%
TGGGTGGTTGGAAAGCAGGT+CGG - chr1_3:69515396-69515415 Msa0137210:intron 55.0%
AGCAGGTCGGTCTAAGGGTA+AGG - chr1_3:69515409-69515428 Msa0137210:intron 55.0%
TGGACCCTGCAAGCTGACAA+TGG - chr1_3:69515875-69515894 Msa0137210:intron 55.0%
ACAACGGCAGCAATTGTGGC+TGG - chr1_3:69516042-69516061 Msa0137210:CDS 55.0%
CCACCAAGGACTGCGTGAAG+TGG + chr1_3:69515171-69515190 None:intergenic 60.0%
CCACTTCACGCAGTCCTTGG+TGG - chr1_3:69515168-69515187 Msa0137210:CDS 60.0%
CTTCACGCAGTCCTTGGTGG+AGG - chr1_3:69515171-69515190 Msa0137210:CDS 60.0%
CCACCAAGGACTGCGTGAAG+TGG + chr1_3:69515171-69515190 None:intergenic 60.0%
CCACTTCACGCAGTCCTTGG+TGG - chr1_3:69515168-69515187 Msa0137210:CDS 60.0%
CTTCACGCAGTCCTTGGTGG+AGG - chr1_3:69515171-69515190 Msa0137210:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 69514878 69517244 69514878 ID=Msa0137210;Name=Msa0137210
chr1_3 mRNA 69514878 69517244 69514878 ID=Msa0137210-mRNA-1;Parent=Msa0137210;Name=Msa0137210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=251|1|1|1|1|1|5|159|206
chr1_3 exon 69514878 69515206 69514878 ID=Msa0137210-mRNA-1:exon:24081;Parent=Msa0137210-mRNA-1
chr1_3 exon 69515293 69515362 69515293 ID=Msa0137210-mRNA-1:exon:24080;Parent=Msa0137210-mRNA-1
chr1_3 exon 69515694 69515823 69515694 ID=Msa0137210-mRNA-1:exon:24079;Parent=Msa0137210-mRNA-1
chr1_3 exon 69515932 69516112 69515932 ID=Msa0137210-mRNA-1:exon:24078;Parent=Msa0137210-mRNA-1
chr1_3 exon 69516924 69517244 69516924 ID=Msa0137210-mRNA-1:exon:24077;Parent=Msa0137210-mRNA-1
chr1_3 five_prime_UTR 69516994 69517244 69516994 ID=Msa0137210-mRNA-1:five_prime_utr;Parent=Msa0137210-mRNA-1
chr1_3 CDS 69516924 69516993 69516924 ID=Msa0137210-mRNA-1:cds;Parent=Msa0137210-mRNA-1
chr1_3 CDS 69515932 69516112 69515932 ID=Msa0137210-mRNA-1:cds;Parent=Msa0137210-mRNA-1
chr1_3 CDS 69515694 69515823 69515694 ID=Msa0137210-mRNA-1:cds;Parent=Msa0137210-mRNA-1
chr1_3 CDS 69515293 69515362 69515293 ID=Msa0137210-mRNA-1:cds;Parent=Msa0137210-mRNA-1
chr1_3 CDS 69515037 69515206 69515037 ID=Msa0137210-mRNA-1:cds;Parent=Msa0137210-mRNA-1
chr1_3 three_prime_UTR 69514878 69515036 69514878 ID=Msa0137210-mRNA-1:three_prime_utr;Parent=Msa0137210-mRNA-1
Gene Sequence

>Msa0137210

ATGCCAATCCGTTCCAATCAACCTGGTTTATTTGGTAGACCACTTCACGCAGTCCTTGGTGGAGGAAAGATTGCTGATATCTTGCTATGGAAAGACATGAAAACAACGGCAGCAATTGTGGCTGGATTTTCAATGGTTTGGTTTCTCTTTGAAGTGGTTGAATATAATCTTGTTACTCTGCTATGCCACATCCTCATAGCCCTTATGCTCATTCTCTTTATTTGGTATAATGCAGCTGGATTAATCACTTGGAAACTTCCTGATATCTATGATTTTGAAATCCCAGATTCTACCGTTAGATTCATTCATAAAAAGTTCAACTTGTTCTTGAGGAAATTTTATGACATTTCAACTGGGAAAGATCTTAGATTCTTCTTTGTGACAATAGCTGGTCTATGGATCATGTCTACTATTGGAAATTTCTTCAGCACTGTCAATTTACTATATACAACATTTTTGTGCCTGGTGACACTTCCAATTATGTATGAGCAGTATGAACATGAGGTGGACTATCTAGCAAGTAAAGGAAACCAAGACGTGAAGAGATTGTTCAACAAATTGGATTCTACAGTTCTCAATAGGATTCCAAGGGGACCTGTGAAAGAAAAGAAGTACCGATGA
Protein sequence

>Msa0137210

MPIRSNQPGLFGRPLHAVLGGGKIADILLWKDMKTTAAIVAGFSMVWFLFEVVEYNLVTLLCHILIALMLILFIWYNAAGLITWKLPDIYDFEIPDSTVRFIHKKFNLFLRKFYDISTGKDLRFFFVTIAGLWIMSTIGNFFSTVNLLYTTFLCLVTLPIMYEQYEHEVDYLASKGNQDVKRLFNKLDSTVLNRIPRGPVKEKKYR*