AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1194950


Find 248 sgRNAs with CRISPR-Local

Find 1672 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr8_1 gene 42528904 42555752 42528904 ID=Msa1194950;Name=Msa1194950
chr8_1 mRNA 42528904 42555752 42528904 ID=Msa1194950-mRNA-1;Parent=Msa1194950;Name=Msa1194950-mRNA-1;_AED=0.16;_eAED=0.16;_QI=288|1|1|1|0.96|0.96|26|275|1092
chr8_1 exon 42528904 42529485 42528904 ID=Msa1194950-mRNA-1:exon:13738;Parent=Msa1194950-mRNA-1
chr8_1 exon 42530301 42530407 42530301 ID=Msa1194950-mRNA-1:exon:13737;Parent=Msa1194950-mRNA-1
chr8_1 exon 42530500 42530862 42530500 ID=Msa1194950-mRNA-1:exon:13736;Parent=Msa1194950-mRNA-1
chr8_1 exon 42530976 42531143 42530976 ID=Msa1194950-mRNA-1:exon:13735;Parent=Msa1194950-mRNA-1
chr8_1 exon 42531237 42531458 42531237 ID=Msa1194950-mRNA-1:exon:13734;Parent=Msa1194950-mRNA-1
chr8_1 exon 42531678 42531917 42531678 ID=Msa1194950-mRNA-1:exon:13733;Parent=Msa1194950-mRNA-1
chr8_1 exon 42532004 42532083 42532004 ID=Msa1194950-mRNA-1:exon:13732;Parent=Msa1194950-mRNA-1
chr8_1 exon 42532200 42532365 42532200 ID=Msa1194950-mRNA-1:exon:13731;Parent=Msa1194950-mRNA-1
chr8_1 exon 42534942 42535154 42534942 ID=Msa1194950-mRNA-1:exon:13730;Parent=Msa1194950-mRNA-1
chr8_1 exon 42535245 42535308 42535245 ID=Msa1194950-mRNA-1:exon:13729;Parent=Msa1194950-mRNA-1
chr8_1 exon 42535389 42535490 42535389 ID=Msa1194950-mRNA-1:exon:13728;Parent=Msa1194950-mRNA-1
chr8_1 exon 42537752 42537897 42537752 ID=Msa1194950-mRNA-1:exon:13727;Parent=Msa1194950-mRNA-1
chr8_1 exon 42538590 42538694 42538590 ID=Msa1194950-mRNA-1:exon:13726;Parent=Msa1194950-mRNA-1
chr8_1 exon 42538776 42538922 42538776 ID=Msa1194950-mRNA-1:exon:13725;Parent=Msa1194950-mRNA-1
chr8_1 exon 42547834 42547950 42547834 ID=Msa1194950-mRNA-1:exon:13724;Parent=Msa1194950-mRNA-1
chr8_1 exon 42548041 42548118 42548041 ID=Msa1194950-mRNA-1:exon:13723;Parent=Msa1194950-mRNA-1
chr8_1 exon 42548212 42548302 42548212 ID=Msa1194950-mRNA-1:exon:13722;Parent=Msa1194950-mRNA-1
chr8_1 exon 42548883 42549004 42548883 ID=Msa1194950-mRNA-1:exon:13721;Parent=Msa1194950-mRNA-1
chr8_1 exon 42550242 42550307 42550242 ID=Msa1194950-mRNA-1:exon:13720;Parent=Msa1194950-mRNA-1
chr8_1 exon 42550545 42550651 42550545 ID=Msa1194950-mRNA-1:exon:13719;Parent=Msa1194950-mRNA-1
chr8_1 exon 42551503 42551599 42551503 ID=Msa1194950-mRNA-1:exon:13718;Parent=Msa1194950-mRNA-1
chr8_1 exon 42551713 42551790 42551713 ID=Msa1194950-mRNA-1:exon:13717;Parent=Msa1194950-mRNA-1
chr8_1 exon 42553485 42553595 42553485 ID=Msa1194950-mRNA-1:exon:13716;Parent=Msa1194950-mRNA-1
chr8_1 exon 42553999 42554080 42553999 ID=Msa1194950-mRNA-1:exon:13715;Parent=Msa1194950-mRNA-1
chr8_1 exon 42555414 42555475 42555414 ID=Msa1194950-mRNA-1:exon:13714;Parent=Msa1194950-mRNA-1
chr8_1 exon 42555627 42555752 42555627 ID=Msa1194950-mRNA-1:exon:13713;Parent=Msa1194950-mRNA-1
chr8_1 five_prime_UTR 42555627 42555752 42555627 ID=Msa1194950-mRNA-1:five_prime_utr;Parent=Msa1194950-mRNA-1
chr8_1 five_prime_UTR 42555414 42555475 42555414 ID=Msa1194950-mRNA-1:five_prime_utr;Parent=Msa1194950-mRNA-1
chr8_1 five_prime_UTR 42553999 42554080 42553999 ID=Msa1194950-mRNA-1:five_prime_utr;Parent=Msa1194950-mRNA-1
chr8_1 five_prime_UTR 42553578 42553595 42553578 ID=Msa1194950-mRNA-1:five_prime_utr;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42553485 42553577 42553485 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42551713 42551790 42551713 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42551503 42551599 42551503 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42550545 42550651 42550545 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42550242 42550307 42550242 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42548883 42549004 42548883 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42548212 42548302 42548212 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42548041 42548118 42548041 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42547834 42547950 42547834 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42538776 42538922 42538776 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42538590 42538694 42538590 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42537752 42537897 42537752 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42535389 42535490 42535389 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42535245 42535308 42535245 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42534942 42535154 42534942 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42532200 42532365 42532200 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42532004 42532083 42532004 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42531678 42531917 42531678 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42531237 42531458 42531237 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42530976 42531143 42530976 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42530500 42530862 42530500 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42530301 42530407 42530301 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 CDS 42529179 42529485 42529179 ID=Msa1194950-mRNA-1:cds;Parent=Msa1194950-mRNA-1
chr8_1 three_prime_UTR 42528904 42529178 42528904 ID=Msa1194950-mRNA-1:three_prime_utr;Parent=Msa1194950-mRNA-1
Gene Sequence

>Msa1194950

ATGTCCATAAACAATAATATGATAGATGTTTTACAAGATCAAAAGTGGGTGTCTATACCTTGGAAAAAGTTGCAGGTCGGAGATATTATCAAGGTTAAGCAGGATGGATTCTTTCCTGCAGATTTGCTTTTCTTGGCTAGTACAAATGTAGATGGTGTCTGCTACACTGAGACTGCTAATTTGGACGGGGAGACCAATTTGAAGATTAGGAAAGCATTGGAAAAAACCTGGGATTACCTGACTCCAGAGAAGGCATCCGAGTTTAAAGGTGAAATTCAGTGTGAGCAACCAAACAATTCCCTGTATACATTTACTGGAAATCTTTTGATTCAAAAGCAAACACTTCCCCTCAGTCCAAACCAAATTCTTTTGCGAGGATGCAGTCTCAGAAATACAGAGTATATTGTTGGTGTTGTTATTTTTACAGGACAAGAAACAAAGGTGATGATGAATTCAATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGGAAACTTGACAAGCTCATACTTGCTCTTTTTGCAACACTCTTTATGATGTGTTTTATTGGAGCCATAGGCAGTGCTATTTTCGTGAACAAAAAATACTTTTACTTGCATCTTGACTCATCAGAGGAGGGCTCGGCACAGTTCAATCCAGGAAACAGATTTCTGGTTTTTATTCTGACTATGTTTACCCTTATCACACTGTATTCAACAATCATCCCAATCTCACTTTATGTGTCTATAGAGATGATAAAATTTATTCAATCAACTCAATTTATCAACAAGGATTTGGGTATGTACCACAAAGAAAGCAATACACCGGCATTGGCCAGAACTTCAAATCTGAATGAAGAACTTGGACAGGTCGAGTATATTTTTTCCGACAAAACTGGGACCCTAACAAGAAACTTAATGGAGTTCTTCAAATGTTCGATTGGAGCAGAGGTCTATGGAAATGGTGTGACCGAAATTGAGAGGGGACTAGCAGAGCGCAATGGCATGAAAATTGAGGAAAATAGATCGCCCAATGCTGTGCAAGAGAGGGGTTTCAATTTTGAAGATGCCAGGCTTATGAGAGGAGCTTGGAGGAATGAGCCCAATCCCGATGCATGCAAAGAATTCTTCAGATGCCTTGCTATATGCCATACTGTACTTCCGGAAGGTGATGAGAAGTCCCCTGAAAAGATCAAATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCAAAGCACTTTGGTTTCTTCTTCTACAGGCGCACACCTACAATGATATATGTTCGAGAATCTCATGTTGAGAAGATGGGAAAAGTTCAAGATATACCCTATGAGATTCTCAATGTGCTTGAATTTAATAGTACAAGGAAGCGCCAGTCAGTTGTATGTCGTTATCCAGATGGAAGGCTTGTACTATACTGTAAGGGTGCTGATACTGTAATCTATGAGAGACTGGCTGATTCTAACAACGATATGAAGAAAATCACCAGGGAGTACTTGGAGCAATTTGGATCATCTGGACTACGTACATTATGCCTGGCTTACAGAGAATTGCGTCCAAATGTTTACGAAAGCTGGAATGAGAAGTTTATCCAGGCCAAGTCTACTCTACATGATCGTGAAAAGAAGTTAGACGAGGTGGCAGAACTCATAGAAAATGATCTCATTTTAATTGGTAGCACTGCAATAGAAGACAAGCTTCAAGAGGGAGTACCAGCATGCATAGAGACTCTTCAAAGAGCTGGTATTAAAATTTGGGTTCTGACAGGGGACAAGATTGAAACAGCAATAAACATAGCCTATGCATGCAATTTGATAAACAATGAAATGAAGCAATTTGTTATCAGTTCAGAAACTGATGCAATTAGAGAAGTTGAAGACAGGGGTGACCAAGTGGAAATTGCACGATTTATTAAAGAAGAAGTGAAAAGACAGCTGAAGAAATGCCTCGAGGAAGCACAAAGCTATTTTCACACTGTATCTGGACCAAAATTAGCACTAGTAATTGATGGAAAGTGTCTAATGTATGCATTGGATCCAACTTTAAGGGTGATGTTGCTCAATCTTAGTTTGAATTGTCATGCGGTTGTTTGCTGCCGGGTTTCTCCCTTACAAAAAGCACAGGTCACAAGTATGGTGAAGAAAGGTGCCAAGAAAATAACCCTTAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGAATGGAGGGAATGCAAGCTGTGATGGCTAGTGATTTTGCCATTGCACAATTCCGTTACCTTGAAGATTTGCTTCTTGTTCACGGCCGCTGGTCATATTTGCGAGTATGCAAGGTCGTGATATACTTCTTTTACAAGAATCTCACATTTACTCTTACTCAATTTTGGTTTACTTTTCAAACTGGGTTTTCTGGTCAAAGGTTCTATGATGATTGGTTTCAGTCTTTATATAATGTTATTTTCACGGCATTGCCTGTGATCATAGTTGGATTATTTGACAAGGATGTTAGTGCATCTCTATCCAAGAAGTATCCTGAATTATACATGGAAGGAATAAGAAATGTCTTCTTCAAATGGAAAGTCGTGGCTATATGGGCCTTTTTTTCTGTATACCAGTCGCTAATATTCTTCTATTTTGTGAGTACTACAAATTTAAGTGCAAAAAACTCAGATGGCAAGACATTTGGACTCTGGGATGTCAGTACAATGGCATTCACTTGTGTTGTAGTAACTGTCAACTTGAGATTACTTATGATTTGTAATTCAATAACAAGATGGCACTACATTAGTGTTGGTGGAAGCATATTAGCGTGGTTCATTTTTATTTTTATATATTCAGGGATCACCACTCCTTATGATCGACAGGAGAATGTTTATTTTGTCATATATGTCTTGATGAGTACCGTATATTTCTACATAACACTACTACTTGTTCCCGTTGCTGCGCTTTTCTGCAACTTTGTTTATCAAGGGGTTCAAAGATGGTTCTTCCCCTATGATTATCAGATTGTTCAAGAAATACACAGACATGAGATTGATAGCACTGGTAGGGCACAGCTGCTGGAGATAGGGAACCACCTTACGCCAACTGAGGCAAGGAGCTATGCCATATCTCAACTCCCACGAGAGTTATCAAAGCACACCGGATTTGCTTTCGATTCACCTGGTTACGAGTCCTTTTTCGCTGCACAGCTTGGCGCATATGCTCCACCAAAGGCATGGGATGTTGCTAGACGAGCTAGCATGAAATCACGGCCCAAGACTGAGCAGCAAAAGTAA

Protein sequence

>Msa1194950

MSINNNMIDVLQDQKWVSIPWKKLQVGDIIKVKQDGFFPADLLFLASTNVDGVCYTETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEIQCEQPNNSLYTFTGNLLIQKQTLPLSPNQILLRGCSLRNTEYIVGVVIFTGQETKVMMNSMNVPSKRSTLERKLDKLILALFATLFMMCFIGAIGSAIFVNKKYFYLHLDSSEEGSAQFNPGNRFLVFILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLGMYHKESNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGAEVYGNGVTEIERGLAERNGMKIEENRSPNAVQERGFNFEDARLMRGAWRNEPNPDACKEFFRCLAICHTVLPEGDEKSPEKIKYQAASPDEAALVIAAKHFGFFFYRRTPTMIYVRESHVEKMGKVQDIPYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVIYERLADSNNDMKKITREYLEQFGSSGLRTLCLAYRELRPNVYESWNEKFIQAKSTLHDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDAIREVEDRGDQVEIARFIKEEVKRQLKKCLEEAQSYFHTVSGPKLALVIDGKCLMYALDPTLRVMLLNLSLNCHAVVCCRVSPLQKAQVTSMVKKGAKKITLSIGDGANDVSMIQAAHVGVGISGMEGMQAVMASDFAIAQFRYLEDLLLVHGRWSYLRVCKVVIYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYMEGIRNVFFKWKVVAIWAFFSVYQSLIFFYFVSTTNLSAKNSDGKTFGLWDVSTMAFTCVVVTVNLRLLMICNSITRWHYISVGGSILAWFIFIFIYSGITTPYDRQENVYFVIYVLMSTVYFYITLLLVPVAALFCNFVYQGVQRWFFPYDYQIVQEIHRHEIDSTGRAQLLEIGNHLTPTEARSYAISQLPRELSKHTGFAFDSPGYESFFAAQLGAYAPPKAWDVARRASMKSRPKTEQQK*