AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1442790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1442790 MtrunA17_Chr8g0381341 86.741 626 44 3 1 623 1 590 0.0 1034
Msa1442790 MtrunA17_Chr8g0381341 99.167 120 1 0 669 788 542 661 3.55e-73 251
Msa1442790 MtrunA17_Chr5g0419511 55.422 83 2 1 474 556 34 81 1.14e-16 75.5
Msa1442790 MtrunA17_Chr1g0203001 51.724 87 41 1 671 757 342 427 1.05e-15 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1442790 AT1G24560.1 51.827 602 230 9 4 582 2 566 8.80e-178 526
Msa1442790 AT1G24560.1 63.333 120 42 2 669 788 561 678 5.69e-33 136

Find 233 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATATTTATCCCAATTCTT+AGG 0.135778 tig0030213:-14599 Msa1442790:five_prime_UTR
TTCCGAACCTCTCTTATAAT+TGG 0.162753 tig0030213:-10287 Msa1442790:exon
ATGAGGTTTCTGAGAGTTTA+AGG 0.165822 tig0030213:-13812 Msa1442790:CDS
ACTGGAATTGAGAAGATTTC+TGG 0.197534 tig0030213:-14146 Msa1442790:CDS
GAAGGAGTTTGTTAATAATT+TGG 0.197675 tig0030213:-13763 Msa1442790:CDS
TTCAAATTTAGTAAGATTCT+TGG 0.227068 tig0030213:-13321 Msa1442790:CDS
CATTCTATGGTCGAGTTCTT+TGG 0.227216 tig0030213:+12819 None:intergenic
TCTGGTAAGGTGAATGGTTT+TGG 0.265573 tig0030213:-14128 Msa1442790:CDS
TTCAAAAGAAAGGGCTTTGC+AGG 0.266771 tig0030213:+11680 None:intergenic
GACTTCATTCAACCGATTAA+AGG 0.284071 tig0030213:-14348 Msa1442790:CDS
CTGAATGAGTTATTCAAGTA+TGG 0.287155 tig0030213:-11433 Msa1442790:CDS
CTCCTTTCAGACTCAGTTCA+TGG 0.288879 tig0030213:-11612 Msa1442790:CDS
AACTGCAGCCGTTGAGGGTT+TGG 0.288903 tig0030213:-13868 Msa1442790:CDS
TGCTTCCATGAAGGCATAAA+AGG 0.290640 tig0030213:+10070 None:intergenic
TGCAATTTCCCAGTTTGAAC+AGG 0.299905 tig0030213:-9953 Msa1442790:three_prime_UTR
CCTCCACCTGGTGCATTCTA+TGG 0.302241 tig0030213:+12806 None:intergenic
AATGTGATTTAAGGTTAGTT+TGG 0.307224 tig0030213:+14835 None:intergenic
CGTTGATGATGCTGGTTATT+CGG 0.311068 tig0030213:-13649 Msa1442790:CDS
GGAGAGGGATTTGGTTGTTA+AGG 0.312356 tig0030213:-13847 Msa1442790:CDS
CACTGTGCAGGCTGGTGCTT+TGG 0.313975 tig0030213:-13120 Msa1442790:intron
CAATGTTGATTGTAGATTCT+TGG 0.329932 tig0030213:-11472 Msa1442790:intron
AAAGTGGCAGCAAAGGAAAA+AGG 0.331138 tig0030213:+11573 None:intergenic
AGATTTCTCTGCTGCATCTC+TGG 0.331404 tig0030213:+10522 None:intergenic
AAGACTTGAGGGGCCGAAAT+AGG 0.339224 tig0030213:-10414 Msa1442790:CDS
GAGTGAGGGTTTGCAGTTGA+AGG 0.339449 tig0030213:-13781 Msa1442790:CDS
ATATGATAAACCCTAAGAAT+TGG 0.340104 tig0030213:+14588 None:intergenic
TGCTGCATCTCTGGCTGCCA+TGG 0.341080 tig0030213:+10531 None:intergenic
ATTGAATGTAATTGTGGTTT+AGG 0.343298 tig0030213:+14638 None:intergenic
GAATTTGATGTGATCGGAAT+TGG 0.344001 tig0030213:+14479 None:intergenic
TGAAGTCTGTAACTCCGTTT+TGG 0.347141 tig0030213:+14364 None:intergenic
AATGTACGCGCCTCTTTGGC+TGG 0.351712 tig0030213:-13579 Msa1442790:CDS
ATTTCCGACCCTGTTCAAAC+TGG 0.351908 tig0030213:+9944 None:intergenic
GTTAAGGAAAAGGATCAAAT+TGG 0.357356 tig0030213:-13447 Msa1442790:CDS
TGAGGGTTTGGAGAGGGATT+TGG 0.360266 tig0030213:-13856 Msa1442790:CDS
TCGAGTCATATGATGGTTAC+TGG 0.361394 tig0030213:-14164 Msa1442790:CDS
TGTCATGTTGCAGCAGCATT+TGG 0.363506 tig0030213:-10134 Msa1442790:three_prime_UTR
CTTGAGCAAGCACCTTTAAT+CGG 0.365333 tig0030213:+14336 None:intergenic
TCACAGTCTCATCTAAATTC+TGG 0.366217 tig0030213:+13478 None:intergenic
GGTTGCGTGATGATGCTGTT+AGG 0.370427 tig0030213:-14283 Msa1442790:CDS
TATGGTCGAGTTCTTTGGCC+TGG 0.370910 tig0030213:+12824 None:intergenic
ATACATATCTAGGCCTATTT+CGG 0.371352 tig0030213:+10401 None:intergenic
CATATTTATCCCAATTCTTA+GGG 0.378994 tig0030213:-14598 Msa1442790:five_prime_UTR
CAAGAAGCTGCTGCAGGCAC+AGG 0.383789 tig0030213:-12495 Msa1442790:CDS
TGAGAATGTACGCGCCTCTT+TGG 0.389318 tig0030213:-13583 Msa1442790:CDS
ATTGAAAACACAACCATGTA+TGG 0.395655 tig0030213:+10007 None:intergenic
AGCACACTGTGAATGAATTA+AGG 0.395713 tig0030213:-13055 Msa1442790:intron
TAATAATTTGGAATCAAAGA+TGG 0.396116 tig0030213:-13751 Msa1442790:CDS
ATCAAATTGGTTCTTTGCTT+AGG 0.398406 tig0030213:-13434 Msa1442790:CDS
TGTCATGTGGTCATGGGCTG+TGG 0.399721 tig0030213:-12658 Msa1442790:CDS
GGTATGGCTGCGGTGACTTA+TGG 0.401013 tig0030213:-14065 Msa1442790:CDS
ATACGGAAGCGCGATGAATT+CGG 0.405883 tig0030213:-14308 Msa1442790:CDS
CATGGCCAGCATACATATCT+AGG 0.407682 tig0030213:+10391 None:intergenic
GGTAATTTGCGACAGGCATT+TGG 0.412774 tig0030213:-12636 Msa1442790:CDS
GAATTATGAGATTGCTATTG+AGG 0.413784 tig0030213:-13943 Msa1442790:CDS
GGTATTGTGGGCGTGAGCAC+AGG 0.419071 tig0030213:+14868 None:intergenic
TCTTATAAACACTACAAATC+TGG 0.419248 tig0030213:+13673 None:intergenic
AGAAACTGCGAGGCAATTAG+AGG 0.421139 tig0030213:-14231 Msa1442790:CDS
AAGATTTCTGGTAAGGTGAA+TGG 0.421879 tig0030213:-14134 Msa1442790:CDS
GGCTTTACTACATTAAGAAC+AGG 0.423344 tig0030213:+10173 None:intergenic
TGGCTCGGCATGGACTTTGT+TGG 0.426457 tig0030213:-10364 Msa1442790:CDS
GGTTAGTTTGGAGTGAAGAT+TGG 0.426514 tig0030213:+14847 None:intergenic
ATGCTATTCAATTAAATGTC+CGG 0.428651 tig0030213:-14560 Msa1442790:exon
GCTTTCTGAGTCGTTGTTTG+TGG 0.428931 tig0030213:-13625 Msa1442790:CDS
TATGATAAACCCTAAGAATT+GGG 0.432534 tig0030213:+14589 None:intergenic
TGCTTTGGAGGATGTTGTTA+AGG 0.434993 tig0030213:-13105 Msa1442790:CDS
GACTGTGAATAGGTTAGTTA+AGG 0.436099 tig0030213:-13463 Msa1442790:CDS
AAAATGTGTTCATCCCTTGC+TGG 0.440413 tig0030213:+11703 None:intergenic
TGTGCAGGCTGGTGCTTTGG+AGG 0.442489 tig0030213:-13117 Msa1442790:intron
TTTAAGGAAGGAAGAGAGTG+AGG 0.442980 tig0030213:-13796 Msa1442790:CDS
GAAAATGGGTTGAGGGAGGT+TGG 0.445747 tig0030213:-13351 Msa1442790:CDS
GTTGTTTGTGGCGCAAGAAA+CGG 0.448855 tig0030213:-13613 Msa1442790:CDS
TGAGAACAGAGAAGACTTGA+GGG 0.449088 tig0030213:-10425 Msa1442790:CDS
ATGGTCGAGTTCTTTGGCCT+GGG 0.450706 tig0030213:+12825 None:intergenic
TGCGAGGCAATTAGAGGAAT+CGG 0.452953 tig0030213:-14225 Msa1442790:CDS
CTCTTTATAATGCAGATTGA+GGG 0.453284 tig0030213:-12579 Msa1442790:CDS
TCTCTTTATAATGCAGATTG+AGG 0.453775 tig0030213:-12580 Msa1442790:CDS
AAGGAATGTACAGAATAATC+AGG 0.455113 tig0030213:+10089 None:intergenic
AAAAGTTAGGGATTTGGTTG+AGG 0.457748 tig0030213:-13517 Msa1442790:CDS
TAACAGCATCATCACGCAAC+CGG 0.459925 tig0030213:+14285 None:intergenic
GACTGATACGCAACAGCAAA+CGG 0.460239 tig0030213:-10329 Msa1442790:CDS
TCTCTTCAAGTTCCTCCACC+TGG 0.465182 tig0030213:+12794 None:intergenic
ACAGAATGATGCAAGTGTTA+AGG 0.465407 tig0030213:-14000 Msa1442790:CDS
CACATCAAATTCACCTTCAC+AGG 0.466563 tig0030213:-14468 Msa1442790:CDS
TTTAGTAAGATTCTTGGAGA+TGG 0.466672 tig0030213:-13315 Msa1442790:CDS
TTCCAATTATAAGAGAGGTT+CGG 0.467159 tig0030213:+10285 None:intergenic
CATTAGCAGCTTCAAAAGAA+AGG 0.469658 tig0030213:+11670 None:intergenic
AATCGAATTGAATGTAATTG+TGG 0.470084 tig0030213:+14632 None:intergenic
GCAAACGGCTTCTAACGAAA+TGG 0.471284 tig0030213:-10314 Msa1442790:CDS
TGCTATTGAGGTTTCGCAGT+TGG 0.472675 tig0030213:-13931 Msa1442790:CDS
AGCGGCAGAAAATGGGTTGA+GGG 0.474191 tig0030213:-13358 Msa1442790:CDS
ATAAGAGCGTGAGGAGGAAG+AGG 0.475459 tig0030213:+15002 None:intergenic
GGCATCTAAGTCGCCGGCGC+CGG 0.475732 tig0030213:+14541 None:intergenic
ACCATGCTTGAGCTTTAGCT+TGG 0.476966 tig0030213:+11404 None:intergenic
GCAGAGCAAGAAGCTGCTGC+AGG 0.479033 tig0030213:-12501 Msa1442790:CDS
TTCAATTAAATGTCCGGCGC+CGG 0.481437 tig0030213:-14554 Msa1442790:exon
TGGAGTGAAGATTGGTATTG+TGG 0.482769 tig0030213:+14855 None:intergenic
GATTCTCGCCGAGCTTGATC+AGG 0.482851 tig0030213:-14417 Msa1442790:CDS
CGGCGACTTAGATGCCGATT+CGG 0.483746 tig0030213:-14534 Msa1442790:CDS
ATTTAGATGAGACTGTGAAT+AGG 0.488303 tig0030213:-13473 Msa1442790:CDS
TTAAGGAAGGAAGAGAGTGA+GGG 0.489133 tig0030213:-13795 Msa1442790:CDS
CGCCGCCGAGAAAGCCAAAA+CGG 0.489160 tig0030213:-14378 Msa1442790:CDS
AAGAAAACTGCAGCCGTTGA+GGG 0.489646 tig0030213:-13873 Msa1442790:CDS
AATTTCTTAATTCAGAAGAC+TGG 0.491064 tig0030213:-14717 Msa1442790:five_prime_UTR
GAATTCATCGCGCTTCCGTA+TGG 0.491635 tig0030213:+14310 None:intergenic
GGAGTGAAGATTGGTATTGT+GGG 0.493649 tig0030213:+14856 None:intergenic
AGAGACAGCAGCTGCTGCCA+TGG 0.494691 tig0030213:-10548 Msa1442790:CDS
CAACTCATTTGAAGACGGAT+TGG 0.497391 tig0030213:+13386 None:intergenic
TGCTGGCCATGGCAGTGGCT+CGG 0.499416 tig0030213:-10379 Msa1442790:CDS
GAAACTTCGTTTAGAAGAAA+CGG 0.500135 tig0030213:+14912 None:intergenic
TTAAGGCTAGGGATCAAGCT+AGG 0.500217 tig0030213:-13983 Msa1442790:CDS
GGGATTGATGTGGATGAGGA+AGG 0.504616 tig0030213:+14890 None:intergenic
GCCATGGCAGTGGCTCGGCA+TGG 0.506711 tig0030213:-10374 Msa1442790:CDS
ACTTGAGGTCTTCTAGACTA+AGG 0.506773 tig0030213:-10486 Msa1442790:CDS
ACGCGCCTCTTTGGCTGGGA+TGG 0.508680 tig0030213:-13574 Msa1442790:CDS
GGCTGTGGGTAATTTGCGAC+AGG 0.508723 tig0030213:-12643 Msa1442790:CDS
CGATGGTGAAAGATCAAAGA+TGG 0.512405 tig0030213:+14968 None:intergenic
AATTGAGAAGATTTCTGGTA+AGG 0.512747 tig0030213:-14141 Msa1442790:CDS
GGTTTCTGAGAGTTTAAGGA+AGG 0.515527 tig0030213:-13808 Msa1442790:CDS
ATTAGCAGCTTCAAAAGAAA+GGG 0.517822 tig0030213:+11671 None:intergenic
TGAACAGCAATTTGTGGCAC+AGG 0.518504 tig0030213:-12469 Msa1442790:intron
GAATAGGTTAGTTAAGGAAA+AGG 0.519027 tig0030213:-13457 Msa1442790:CDS
GCAGATTGAGGGGCTAATGA+TGG 0.523203 tig0030213:-12568 Msa1442790:CDS
ATGTACGCGCCTCTTTGGCT+GGG 0.523765 tig0030213:-13578 Msa1442790:CDS
AGAGGATGAAATATACACTT+TGG 0.525090 tig0030213:-13244 Msa1442790:intron
AATTCAGAAGACTGGTTGGT+TGG 0.528171 tig0030213:-14709 Msa1442790:five_prime_UTR
GTTGATTGTAGATTCTTGGT+GGG 0.528212 tig0030213:-11468 Msa1442790:intron
TAGCGGCAGAAAATGGGTTG+AGG 0.529571 tig0030213:-13359 Msa1442790:CDS
AAAATTTCCAATTATAAGAG+AGG 0.530012 tig0030213:+10280 None:intergenic
TATAAGATCGTTGATGATGC+TGG 0.530224 tig0030213:-13657 Msa1442790:CDS
AGCCGTTGAGGGTTTGGAGA+GGG 0.534744 tig0030213:-13862 Msa1442790:CDS
TCTTAATTCAGAAGACTGGT+TGG 0.535569 tig0030213:-14713 Msa1442790:five_prime_UTR
TTCACTTCTCATCTCCAGCA+AGG 0.536569 tig0030213:-11717 Msa1442790:CDS
GTTGCGTGATGATGCTGTTA+GGG 0.539375 tig0030213:-14282 Msa1442790:CDS
TGTTGATTGTAGATTCTTGG+TGG 0.540306 tig0030213:-11469 Msa1442790:intron
GTCATGTGGTCATGGGCTGT+GGG 0.542457 tig0030213:-12657 Msa1442790:CDS
ACAGGGGATTGATGTGGATG+AGG 0.543169 tig0030213:+14886 None:intergenic
CAGTTCATGGTTCATACTCA+AGG 0.543350 tig0030213:-11599 Msa1442790:CDS
AACCATGAACTGAGTCTGAA+AGG 0.543461 tig0030213:+11610 None:intergenic
ATCCCTCTCCAAACCCTCAA+CGG 0.544511 tig0030213:+13860 None:intergenic
GAAATATACCGGTATGGCTG+CGG 0.544973 tig0030213:-14075 Msa1442790:CDS
GAAGAAAACTGCAGCCGTTG+AGG 0.546363 tig0030213:-13874 Msa1442790:CDS
TGATTGTAGATTCTTGGTGG+GGG 0.547544 tig0030213:-11466 Msa1442790:intron
GAGTGCTTTGTCAAAGAGGA+TGG 0.550359 tig0030213:-13412 Msa1442790:CDS
GTATTGTGGGCGTGAGCACA+GGG 0.550762 tig0030213:+14869 None:intergenic
AGGTGTTGAACAGCAATTTG+TGG 0.550763 tig0030213:-12475 Msa1442790:CDS
TTTCCGACCCTGTTCAAACT+GGG 0.551067 tig0030213:+9945 None:intergenic
ATGATGCAAGTGTTAAGGCT+AGG 0.551573 tig0030213:-13995 Msa1442790:CDS
TAATGTAACGACAGTATATG+TGG 0.552792 tig0030213:+10045 None:intergenic
ATTGTGGTTTAGGTTGTCGA+TGG 0.553011 tig0030213:+14648 None:intergenic
TGATGCAAGTGTTAAGGCTA+GGG 0.553468 tig0030213:-13994 Msa1442790:CDS
CCATAGAATGCACCAGGTGG+AGG 0.555814 tig0030213:-12806 Msa1442790:CDS
TAAGGATGAGAAGTTGAATG+AGG 0.556456 tig0030213:-13829 Msa1442790:CDS
GACGTCGCTGAGCACCGAAT+CGG 0.557895 tig0030213:+14520 None:intergenic
GCAGTTGTCAACGCTCAAGC+AGG 0.558280 tig0030213:-10629 Msa1442790:intron
TTAGGAGTGCTTTGTCAAAG+AGG 0.560450 tig0030213:-13416 Msa1442790:CDS
TTGAGAACAGAGAAGACTTG+AGG 0.560542 tig0030213:-10426 Msa1442790:CDS
TAATGTAGTAAAGCCGGTGT+TGG 0.562701 tig0030213:-10165 Msa1442790:three_prime_UTR
TGCTGTTAGGGAGAAGGAAG+AGG 0.562775 tig0030213:-14270 Msa1442790:CDS
TTTCCCAGTTTGAACAGGGT+CGG 0.563294 tig0030213:-9948 Msa1442790:three_prime_UTR
CTTGAGGTCTTCTAGACTAA+GGG 0.563951 tig0030213:-10485 Msa1442790:CDS
TCACTTCTCATCTCCAGCAA+GGG 0.565050 tig0030213:-11716 Msa1442790:CDS
CTAGATATGTATGCTGGCCA+TGG 0.566839 tig0030213:-10390 Msa1442790:CDS
TGCTGGAGATGAGAAGTGAA+AGG 0.567259 tig0030213:+11720 None:intergenic
AAAGGATGAAGTTACGAAAG+TGG 0.568159 tig0030213:+11557 None:intergenic
TCCAAGCTAAAGCTCAAGCA+TGG 0.569147 tig0030213:-11405 Msa1442790:CDS
GTCGCAGAAATATACCGGTA+TGG 0.569668 tig0030213:-14081 Msa1442790:CDS
TGAGAAATCGAGTCATATGA+TGG 0.570001 tig0030213:-14171 Msa1442790:CDS
TAAGCAGCACATAGAAGCCC+AGG 0.570404 tig0030213:-12842 Msa1442790:CDS
TGTTCTTAATGTAGTAAAGC+CGG 0.571546 tig0030213:-10171 Msa1442790:three_prime_UTR
ATGTATGCTGGCCATGGCAG+TGG 0.573801 tig0030213:-10384 Msa1442790:CDS
GCTGGAGATGAGAAGTGAAA+GGG 0.574065 tig0030213:+11721 None:intergenic
CCGGTATATTTCTGCGACCG+CGG 0.574878 tig0030213:+14086 None:intergenic
TGCTTGCTCAAGAAGCCATA+CGG 0.576060 tig0030213:-14325 Msa1442790:CDS
CGAATCGGCATCTAAGTCGC+CGG 0.577434 tig0030213:+14535 None:intergenic
TTGATTGTAGATTCTTGGTG+GGG 0.578249 tig0030213:-11467 Msa1442790:intron
GGTACGTTGTTCTCACGTCA+CGG 0.578556 tig0030213:-14688 Msa1442790:five_prime_UTR
GGTGGAGGAACTTGAAGAGA+AGG 0.578583 tig0030213:-12791 Msa1442790:CDS
TGATGTGATCGGAATTGGAT+CGG 0.580529 tig0030213:+14484 None:intergenic
CTGAAGAAGAAATTAACAGA+TGG 0.583950 tig0030213:-12533 Msa1442790:CDS
TATTAGTGATTTGAGAGATG+AGG 0.584521 tig0030213:-13901 Msa1442790:CDS
CAAGCTCGGCGAGAATCTCA+CGG 0.585055 tig0030213:+14423 None:intergenic
ATAGGCCTAGATATGTATGC+TGG 0.587227 tig0030213:-10396 Msa1442790:CDS
ATAAGTCACCGCAGCCATAC+CGG 0.588731 tig0030213:+14067 None:intergenic
TAGAGGAATCGGCGAAGGAG+CGG 0.590365 tig0030213:-14214 Msa1442790:CDS
CCGCGGTCGCAGAAATATAC+CGG 0.590801 tig0030213:-14086 Msa1442790:CDS
TGACAATGATCGACCAACAC+CGG 0.591110 tig0030213:+10152 None:intergenic
GCAATTTCCCAGTTTGAACA+GGG 0.593362 tig0030213:-9952 Msa1442790:three_prime_UTR
CTCTCAAGTTAGCAGACTTG+AGG 0.593940 tig0030213:-10501 Msa1442790:CDS
AATCTATACATGAGTTGACT+AGG 0.596241 tig0030213:-13551 Msa1442790:CDS
AGTTACGAAAGTGGCAGCAA+AGG 0.597277 tig0030213:+11566 None:intergenic
GCAATTAGAGGAATCGGCGA+AGG 0.598822 tig0030213:-14219 Msa1442790:CDS
TCCATGCCGAGCCACTGCCA+TGG 0.602713 tig0030213:+10373 None:intergenic
AGAGGCAAAGCAATCCATGT+TGG 0.607377 tig0030213:-10599 Msa1442790:CDS
ACTTGAAGAGAAGGAAAGAG+TGG 0.609943 tig0030213:-12782 Msa1442790:CDS
TTCAACTGATCAATCAACAA+AGG 0.612891 tig0030213:+13717 None:intergenic
TCTTTATAATGCAGATTGAG+GGG 0.613990 tig0030213:-12578 Msa1442790:CDS
AGAGACAGAGACGGTAGCGA+TGG 0.614364 tig0030213:+14951 None:intergenic
TATGTGGAATGCTTCCATGA+AGG 0.614570 tig0030213:+10061 None:intergenic
GGAGCGGCAAGGATTACGAT+CGG 0.614644 tig0030213:-14198 Msa1442790:CDS
ATCAAACATAAATACACAAG+GGG 0.616202 tig0030213:+10238 None:intergenic
GCTCAAGCAGGAACTTGAAG+AGG 0.618199 tig0030213:-10617 Msa1442790:CDS
CTCAGCGACGTCGAGGACGA+CGG 0.618536 tig0030213:-14509 Msa1442790:CDS
TTCGGTGCTCAGCGACGTCG+AGG 0.625351 tig0030213:-14516 Msa1442790:CDS
TGAAAGGAGTAACTCAGCAG+AGG 0.626089 tig0030213:+11626 None:intergenic
AGTTCATGGTTCATACTCAA+GGG 0.628939 tig0030213:-11598 Msa1442790:CDS
GAAGGTGAATTTGATGTGAT+CGG 0.630779 tig0030213:+14473 None:intergenic
ACGGAGACTTCATCCTGTGA+AGG 0.633111 tig0030213:+14455 None:intergenic
TAAGGCTAGGGATCAAGCTA+GGG 0.634167 tig0030213:-13982 Msa1442790:CDS
TGATGATGCTGTTAGGGAGA+AGG 0.635078 tig0030213:-14276 Msa1442790:CDS
TAAGAGCGTGAGGAGGAAGA+GGG 0.639625 tig0030213:+15003 None:intergenic
GTAACAGAAAAGTCCATACA+TGG 0.642245 tig0030213:-10020 Msa1442790:three_prime_UTR
AGATTCCATCCCAGCCAAAG+AGG 0.642943 tig0030213:+13569 None:intergenic
CAGCCGTTGAGGGTTTGGAG+AGG 0.644245 tig0030213:-13863 Msa1442790:CDS
TTTCTTCTCAGATTCCAACA+TGG 0.645960 tig0030213:+10585 None:intergenic
GGAAGCGCGATGAATTCGGC+CGG 0.645981 tig0030213:-14304 Msa1442790:CDS
ACTCGACCATAGAATGCACC+AGG 0.646539 tig0030213:-12812 Msa1442790:CDS
GAATCGGCGAAGGAGCGGCA+AGG 0.647315 tig0030213:-14209 Msa1442790:CDS
TGAAGCGAAATAAGAGCGTG+AGG 0.649388 tig0030213:+14993 None:intergenic
GAAGTGGAAGCGCTTTGCCG+CGG 0.652202 tig0030213:-14103 Msa1442790:CDS
GGCAGAAAATGGGTTGAGGG+AGG 0.653218 tig0030213:-13355 Msa1442790:CDS
AGCGAAATAAGAGCGTGAGG+AGG 0.653332 tig0030213:+14996 None:intergenic
AAATCAAACATAAATACACA+AGG 0.659117 tig0030213:+10236 None:intergenic
GTGAGCACAGGGGATTGATG+TGG 0.660306 tig0030213:+14880 None:intergenic
TTCTAGACTAAGGGACAGAG+TGG 0.663047 tig0030213:-10476 Msa1442790:CDS
AATCAAACATAAATACACAA+GGG 0.663567 tig0030213:+10237 None:intergenic
GAGAACAGAGAAGACTTGAG+GGG 0.677822 tig0030213:-10424 Msa1442790:CDS
GGGGCTAATGATGGACATTG+CGG 0.692078 tig0030213:-12559 Msa1442790:CDS
CGACCATAGAATGCACCAGG+TGG 0.695799 tig0030213:-12809 Msa1442790:CDS
AATCAAAGATGGAATCGTTG+AGG 0.695950 tig0030213:-13740 Msa1442790:CDS
AGCTTCTAGAAGAAACTGCG+AGG 0.719282 tig0030213:-14241 Msa1442790:CDS
CTAGGGAACAGATTGAACAG+AGG 0.728016 tig0030213:-13965 Msa1442790:CDS
ACTTTGTTGGAATTCAGCAG+CGG 0.730616 tig0030213:-10351 Msa1442790:CDS
TATTGTGGGCGTGAGCACAG+GGG 0.761531 tig0030213:+14870 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTCTAAATTTTAATTA+AGG + tig0030213:10210-10229 None:intergenic 10.0%
!! TTTAATTCGAAAAGTAATAA+AGG + tig0030213:10184-10203 None:intergenic 15.0%
!!! AAATGCACAATTTTATTTAT+TGG - tig0030213:12646-12665 Msa1442790:CDS 15.0%
!!! AATTTTATTTATTGGCAATT+TGG - tig0030213:12654-12673 Msa1442790:CDS 15.0%
!!! TGGTTCATTTAATTTTTTTA+TGG + tig0030213:13729-13748 None:intergenic 15.0%
!!! TACATTTTTTCCATTATTTT+TGG - tig0030213:14111-14130 Msa1442790:CDS 15.0%
!!! TAATAATTTGGAATCAAAGA+TGG - tig0030213:11194-11213 Msa1442790:intron 20.0%
!! TTCAAATTTAGTAAGATTCT+TGG - tig0030213:11624-11643 Msa1442790:CDS 20.0%
!! AAATGACAAGTCAAAAAAAA+CGG - tig0030213:11668-11687 Msa1442790:CDS 20.0%
!!! TTTGTTTTTATTTCTCTTTC+TGG - tig0030213:11731-11750 Msa1442790:CDS 20.0%
!! CAGTGTATATTCTAAATTAA+CGG + tig0030213:12732-12751 None:intergenic 20.0%
!! ATTTACAGAAGAAATAATTC+TGG + tig0030213:12854-12873 None:intergenic 20.0%
!! AAATAAATATAATTTCGGTG+TGG + tig0030213:12946-12965 None:intergenic 20.0%
!! ACACCGAAATTATATTTATT+TGG - tig0030213:12945-12964 Msa1442790:intron 20.0%
!! GCTCCAAATAAATATAATTT+CGG + tig0030213:12951-12970 None:intergenic 20.0%
!!! AATTTATAGTTTTTAAGCCA+AGG + tig0030213:13037-13056 None:intergenic 20.0%
!! TAGTTTCTTTATACAATTAC+TGG - tig0030213:13627-13646 Msa1442790:CDS 20.0%
!!! ATTTTTCAAGTGTCATATTA+AGG - tig0030213:13689-13708 Msa1442790:CDS 20.0%
!! AAAATTTCCAATTATAAGAG+AGG + tig0030213:14668-14687 None:intergenic 20.0%
!! AATCAAACATAAATACACAA+GGG + tig0030213:14711-14730 None:intergenic 20.0%
!! AAATCAAACATAAATACACA+AGG + tig0030213:14712-14731 None:intergenic 20.0%
!! AATGTGATTTAAGGTTAGTT+TGG + tig0030213:10113-10132 None:intergenic 25.0%
! GTATAGAGAAATGTGATTTA+AGG + tig0030213:10122-10141 None:intergenic 25.0%
! AATTTCTTAATTCAGAAGAC+TGG - tig0030213:10228-10247 Msa1442790:three_prime_UTR 25.0%
! ATTGAATGTAATTGTGGTTT+AGG + tig0030213:10310-10329 None:intergenic 25.0%
! AATCGAATTGAATGTAATTG+TGG + tig0030213:10316-10335 None:intergenic 25.0%
! TCATATTTATCCCAATTCTT+AGG - tig0030213:10346-10365 Msa1442790:CDS 25.0%
! CATATTTATCCCAATTCTTA+GGG - tig0030213:10347-10366 Msa1442790:CDS 25.0%
! TATGATAAACCCTAAGAATT+GGG + tig0030213:10359-10378 None:intergenic 25.0%
! ATATGATAAACCCTAAGAAT+TGG + tig0030213:10360-10379 None:intergenic 25.0%
! ATGCTATTCAATTAAATGTC+CGG - tig0030213:10385-10404 Msa1442790:CDS 25.0%
!!! GAAGGAGTTTGTTAATAATT+TGG - tig0030213:11182-11201 Msa1442790:intron 25.0%
! TCTTATAAACACTACAAATC+TGG + tig0030213:11275-11294 None:intergenic 25.0%
!! GATTGTTGTTCAAAAAGTTA+GGG - tig0030213:11416-11435 Msa1442790:CDS 25.0%
! AAAAACAACTCATTTGAAGA+CGG + tig0030213:11567-11586 None:intergenic 25.0%
!!! TTCAAATGAGTTGTTTTTAG+CGG - tig0030213:11569-11588 Msa1442790:intron 25.0%
!!! TTTGCTATTTGTCTAACTTT+GGG - tig0030213:11943-11962 Msa1442790:intron 25.0%
! ATATTTGCTTAACTCCATTA+AGG - tig0030213:12063-12082 Msa1442790:intron 25.0%
! TATTTGCTTAACTCCATTAA+GGG - tig0030213:12064-12083 Msa1442790:intron 25.0%
!!! TTTTACAAGTTTGCTATGTT+TGG - tig0030213:12531-12550 Msa1442790:CDS 25.0%
!! CGTTAATTTAGAATATACAC+TGG - tig0030213:12730-12749 Msa1442790:intron 25.0%
! GTAAGTACACAAATTATCAA+TGG + tig0030213:13597-13616 None:intergenic 25.0%
!! TTGATAATTTGTGTACTTAC+TGG - tig0030213:13597-13616 Msa1442790:CDS 25.0%
! TGAACATATGAGTTTATGTT+TGG - tig0030213:13805-13824 Msa1442790:CDS 25.0%
! GAACATATGAGTTTATGTTT+GGG - tig0030213:13806-13825 Msa1442790:CDS 25.0%
!!! CTTAGAGTAATGTTTGTTAT+CGG - tig0030213:14006-14025 Msa1442790:CDS 25.0%
!!! TTTTGGAGAATTTATTTGTG+TGG - tig0030213:14080-14099 Msa1442790:CDS 25.0%
! TGCAACAAGTATTTATGATT+AGG + tig0030213:14291-14310 None:intergenic 25.0%
! ATCAAACATAAATACACAAG+GGG + tig0030213:14710-14729 None:intergenic 25.0%
!! TTCAATTTTATGTCACAGAA+TGG - tig0030213:14733-14752 Msa1442790:five_prime_UTR 25.0%
AAAAAAACAAGAGACAGAGA+CGG + tig0030213:10006-10025 None:intergenic 30.0%
GAAACTTCGTTTAGAAGAAA+CGG + tig0030213:10036-10055 None:intergenic 30.0%
!! AATCTCACGGAATTTTTCAA+CGG + tig0030213:10512-10531 None:intergenic 30.0%
!! AATTGAGAAGATTTCTGGTA+AGG - tig0030213:10804-10823 Msa1442790:intron 30.0%
! GAATTATGAGATTGCTATTG+AGG - tig0030213:11002-11021 Msa1442790:intron 30.0%
TATTAGTGATTTGAGAGATG+AGG - tig0030213:11044-11063 Msa1442790:intron 30.0%
TTCAACTGATCAATCAACAA+AGG + tig0030213:11231-11250 None:intergenic 30.0%
! AATCTATACATGAGTTGACT+AGG - tig0030213:11394-11413 Msa1442790:CDS 30.0%
! GGATTGTTGTTCAAAAAGTT+AGG - tig0030213:11415-11434 Msa1442790:CDS 30.0%
TGTTCAAAAAGTTAGGGATT+TGG - tig0030213:11422-11441 Msa1442790:CDS 30.0%
ATTTAGATGAGACTGTGAAT+AGG - tig0030213:11472-11491 Msa1442790:intron 30.0%
! GAATAGGTTAGTTAAGGAAA+AGG - tig0030213:11488-11507 Msa1442790:intron 30.0%
GTTAAGGAAAAGGATCAAAT+TGG - tig0030213:11498-11517 Msa1442790:intron 30.0%
! ATCAAATTGGTTCTTTGCTT+AGG - tig0030213:11511-11530 Msa1442790:intron 30.0%
TTTAGTAAGATTCTTGGAGA+TGG - tig0030213:11630-11649 Msa1442790:CDS 30.0%
AAAAACGGAAAAAGAAGAAG+AGG - tig0030213:11683-11702 Msa1442790:CDS 30.0%
AGAGGATGAAATATACACTT+TGG - tig0030213:11701-11720 Msa1442790:CDS 30.0%
!! GTTTGCTATTTGTCTAACTT+TGG - tig0030213:11942-11961 Msa1442790:intron 30.0%
TACTGAAGAACTTACATCTT+TGG - tig0030213:11998-12017 Msa1442790:intron 30.0%
ATATGATCCCTTAATTGTGA+AGG - tig0030213:12227-12246 Msa1442790:intron 30.0%
GACAAAACCTTCACAATTAA+GGG + tig0030213:12237-12256 None:intergenic 30.0%
! AGAATGTATGTTTTGTCATG+TGG - tig0030213:12274-12293 Msa1442790:intron 30.0%
TCTCTTTATAATGCAGATTG+AGG - tig0030213:12365-12384 Msa1442790:intron 30.0%
CTCTTTATAATGCAGATTGA+GGG - tig0030213:12366-12385 Msa1442790:intron 30.0%
TCTTTATAATGCAGATTGAG+GGG - tig0030213:12367-12386 Msa1442790:intron 30.0%
CTGAAGAAGAAATTAACAGA+TGG - tig0030213:12412-12431 Msa1442790:intron 30.0%
AATTTGTAAGTTGCAGTTGA+TGG - tig0030213:12570-12589 Msa1442790:CDS 30.0%
! TGAAGTGGAAAAATTGCTTT+TGG - tig0030213:13006-13025 Msa1442790:intron 30.0%
!! GAAGTGGAAAAATTGCTTTT+GGG - tig0030213:13007-13026 Msa1442790:intron 30.0%
!! AAGTGGAAAAATTGCTTTTG+GGG - tig0030213:13008-13027 Msa1442790:intron 30.0%
AACCATCTAAAAAATCTGCA+GGG + tig0030213:13106-13125 None:intergenic 30.0%
AAACCATCTAAAAAATCTGC+AGG + tig0030213:13107-13126 None:intergenic 30.0%
!!! TTTTGAAATCTATTCCCTTC+TGG + tig0030213:13153-13172 None:intergenic 30.0%
ATTAGCAGCTTCAAAAGAAA+GGG + tig0030213:13277-13296 None:intergenic 30.0%
TTGGGATTAAGAAGAAACAA+AGG + tig0030213:13409-13428 None:intergenic 30.0%
! CAATGTTGATTGTAGATTCT+TGG - tig0030213:13473-13492 Msa1442790:CDS 30.0%
CTGAATGAGTTATTCAAGTA+TGG - tig0030213:13512-13531 Msa1442790:CDS 30.0%
GACACTTGAAAAATGAAGTT+GGG + tig0030213:13683-13702 None:intergenic 30.0%
TGACACTTGAAAAATGAAGT+TGG + tig0030213:13684-13703 None:intergenic 30.0%
AAAAATTAGAAGCTTACGCT+TGG + tig0030213:13749-13768 None:intergenic 30.0%
CGATAACAAACATTACTCTA+AGG + tig0030213:14008-14027 None:intergenic 30.0%
AACTAATTAGGCTGTAAATC+TGG - tig0030213:14176-14195 Msa1442790:CDS 30.0%
TCATAATATCCATTAACAGG+TGG + tig0030213:14235-14254 None:intergenic 30.0%
GAGTCATAATATCCATTAAC+AGG + tig0030213:14238-14257 None:intergenic 30.0%
TCATGTTAACTGACAATACA+AGG + tig0030213:14263-14282 None:intergenic 30.0%
ATACATATCTAGGCCTATTT+CGG + tig0030213:14547-14566 None:intergenic 30.0%
TTCCAATTATAAGAGAGGTT+CGG + tig0030213:14663-14682 None:intergenic 30.0%
TGTTCTTAATGTAGTAAAGC+CGG - tig0030213:14774-14793 Msa1442790:intron 30.0%
AAGGAATGTACAGAATAATC+AGG + tig0030213:14859-14878 None:intergenic 30.0%
TAATGTAACGACAGTATATG+TGG + tig0030213:14903-14922 None:intergenic 30.0%
ATTGAAAACACAACCATGTA+TGG + tig0030213:14941-14960 None:intergenic 30.0%
! ATACATGGTTGTGTTTTCAA+TGG - tig0030213:14940-14959 Msa1442790:five_prime_UTR 30.0%
TCTTAATTCAGAAGACTGGT+TGG - tig0030213:10232-10251 Msa1442790:three_prime_UTR 35.0%
GAATTTGATGTGATCGGAAT+TGG + tig0030213:10469-10488 None:intergenic 35.0%
GAAGGTGAATTTGATGTGAT+CGG + tig0030213:10475-10494 None:intergenic 35.0%
GACTTCATTCAACCGATTAA+AGG - tig0030213:10597-10616 Msa1442790:CDS 35.0%
TGAGAAATCGAGTCATATGA+TGG - tig0030213:10774-10793 Msa1442790:intron 35.0%
ACTGGAATTGAGAAGATTTC+TGG - tig0030213:10799-10818 Msa1442790:intron 35.0%
!! AAGATTTCTGGTAAGGTGAA+TGG - tig0030213:10811-10830 Msa1442790:intron 35.0%
ACAGAATGATGCAAGTGTTA+AGG - tig0030213:10945-10964 Msa1442790:intron 35.0%
TAAGGATGAGAAGTTGAATG+AGG - tig0030213:11116-11135 Msa1442790:intron 35.0%
! ATGAGGTTTCTGAGAGTTTA+AGG - tig0030213:11133-11152 Msa1442790:intron 35.0%
AATCAAAGATGGAATCGTTG+AGG - tig0030213:11205-11224 Msa1442790:intron 35.0%
!! TATAAGATCGTTGATGATGC+TGG - tig0030213:11288-11307 Msa1442790:intron 35.0%
! AAAAGTTAGGGATTTGGTTG+AGG - tig0030213:11428-11447 Msa1442790:CDS 35.0%
TCACAGTCTCATCTAAATTC+TGG + tig0030213:11470-11489 None:intergenic 35.0%
! GACTGTGAATAGGTTAGTTA+AGG - tig0030213:11482-11501 Msa1442790:intron 35.0%
!!! TTGTTTTTAGCGGCAGAAAA+TGG - tig0030213:11579-11598 Msa1442790:CDS 35.0%
!!! TGTTTTTAGCGGCAGAAAAT+GGG - tig0030213:11580-11599 Msa1442790:CDS 35.0%
!!! TTTCTGGTTTTCAACGAAAC+TGG - tig0030213:11747-11766 Msa1442790:intron 35.0%
GATACGTAAAGAACTCAACA+AGG + tig0030213:11805-11824 None:intergenic 35.0%
AGCACACTGTGAATGAATTA+AGG - tig0030213:11890-11909 Msa1442790:intron 35.0%
CGACAAAACCTTCACAATTA+AGG + tig0030213:12238-12257 None:intergenic 35.0%
! TATGTTTTGTCATGTGGTCA+TGG - tig0030213:12280-12299 Msa1442790:intron 35.0%
! ATGTTTTGTCATGTGGTCAT+GGG - tig0030213:12281-12300 Msa1442790:intron 35.0%
GGTATGGAATGCTATTAGTT+AGG - tig0030213:12497-12516 Msa1442790:CDS 35.0%
!! TACAAGTTTGCTATGTTTGG+AGG - tig0030213:12534-12553 Msa1442790:CDS 35.0%
TGCCATATACACATATTCCA+GGG - tig0030213:12889-12908 Msa1442790:intron 35.0%
TACCCTGGAATATGTGTATA+TGG + tig0030213:12894-12913 None:intergenic 35.0%
! TTTATTTGGAGCAGCAATAG+TGG - tig0030213:12959-12978 Msa1442790:intron 35.0%
TAGTGGTCTATCTAAATTGC+AGG - tig0030213:12976-12995 Msa1442790:intron 35.0%
ACCATCTAAAAAATCTGCAG+GGG + tig0030213:13105-13124 None:intergenic 35.0%
CATTAGCAGCTTCAAAAGAA+AGG + tig0030213:13278-13297 None:intergenic 35.0%
AGTTCATGGTTCATACTCAA+GGG - tig0030213:13347-13366 Msa1442790:CDS 35.0%
AAAGGATGAAGTTACGAAAG+TGG + tig0030213:13391-13410 None:intergenic 35.0%
! AAGAAGGTGTATCTCACATT+GGG + tig0030213:13427-13446 None:intergenic 35.0%
! AAAGAAGGTGTATCTCACAT+TGG + tig0030213:13428-13447 None:intergenic 35.0%
ATCTACAATCAACATTGACC+AGG + tig0030213:13470-13489 None:intergenic 35.0%
! TGTTGATTGTAGATTCTTGG+TGG - tig0030213:13476-13495 Msa1442790:CDS 35.0%
GTTGATTGTAGATTCTTGGT+GGG - tig0030213:13477-13496 Msa1442790:CDS 35.0%
TTGATTGTAGATTCTTGGTG+GGG - tig0030213:13478-13497 Msa1442790:CDS 35.0%
CACAAATTATCAATGGCTCA+AGG + tig0030213:13590-13609 None:intergenic 35.0%
TGTAAATGAATTGAGCCAAG+CGG + tig0030213:13873-13892 None:intergenic 35.0%
! TGATGATATGCCTTTGACTT+TGG - tig0030213:14052-14071 Msa1442790:CDS 35.0%
! GATGATATGCCTTTGACTTT+GGG - tig0030213:14053-14072 Msa1442790:CDS 35.0%
CAAAAAATGCCCAAAGTCAA+AGG + tig0030213:14065-14084 None:intergenic 35.0%
!!! CTTTGACTTTGGGCATTTTT+TGG - tig0030213:14063-14082 Msa1442790:CDS 35.0%
GGCAACTGTACCAAAAATAA+TGG + tig0030213:14124-14143 None:intergenic 35.0%
TACTTTAAGCCACCTGTTAA+TGG - tig0030213:14223-14242 Msa1442790:CDS 35.0%
TTTCTTCTCAGATTCCAACA+TGG + tig0030213:14363-14382 None:intergenic 35.0%
TTCCGAACCTCTCTTATAAT+TGG - tig0030213:14658-14677 Msa1442790:five_prime_UTR 35.0%
GGCTTTACTACATTAAGAAC+AGG + tig0030213:14775-14794 None:intergenic 35.0%
! ACATTCCTTTTATGCCTTCA+TGG - tig0030213:14870-14889 Msa1442790:five_prime_UTR 35.0%
GTAACAGAAAAGTCCATACA+TGG - tig0030213:14925-14944 Msa1442790:five_prime_UTR 35.0%
! ATGGAAGTCTTTTTGTCTAG+TGG - tig0030213:14959-14978 Msa1442790:five_prime_UTR 35.0%
CGATGGTGAAAGATCAAAGA+TGG + tig0030213:9980-9999 None:intergenic 40.0%
GGAGTGAAGATTGGTATTGT+GGG + tig0030213:10092-10111 None:intergenic 40.0%
TGGAGTGAAGATTGGTATTG+TGG + tig0030213:10093-10112 None:intergenic 40.0%
!! GGTTAGTTTGGAGTGAAGAT+TGG + tig0030213:10101-10120 None:intergenic 40.0%
! AATTCAGAAGACTGGTTGGT+TGG - tig0030213:10236-10255 Msa1442790:three_prime_UTR 40.0%
!! ATTGTGGTTTAGGTTGTCGA+TGG + tig0030213:10300-10319 None:intergenic 40.0%
TGATGTGATCGGAATTGGAT+CGG + tig0030213:10464-10483 None:intergenic 40.0%
CACATCAAATTCACCTTCAC+AGG - tig0030213:10477-10496 Msa1442790:CDS 40.0%
!! TTGCTTTTCCTGATCAAGCT+CGG + tig0030213:10539-10558 None:intergenic 40.0%
!!! TAACTCCGTTTTGGCTTTCT+CGG + tig0030213:10575-10594 None:intergenic 40.0%
! TGAAGTCTGTAACTCCGTTT+TGG + tig0030213:10584-10603 None:intergenic 40.0%
CTTGAGCAAGCACCTTTAAT+CGG + tig0030213:10612-10631 None:intergenic 40.0%
TCGAGTCATATGATGGTTAC+TGG - tig0030213:10781-10800 Msa1442790:intron 40.0%
! TCTGGTAAGGTGAATGGTTT+TGG - tig0030213:10817-10836 Msa1442790:intron 40.0%
ATGATGCAAGTGTTAAGGCT+AGG - tig0030213:10950-10969 Msa1442790:intron 40.0%
TGATGCAAGTGTTAAGGCTA+GGG - tig0030213:10951-10970 Msa1442790:intron 40.0%
! GGTTTCTGAGAGTTTAAGGA+AGG - tig0030213:11137-11156 Msa1442790:intron 40.0%
TTTAAGGAAGGAAGAGAGTG+AGG - tig0030213:11149-11168 Msa1442790:intron 40.0%
TTAAGGAAGGAAGAGAGTGA+GGG - tig0030213:11150-11169 Msa1442790:intron 40.0%
!! CGTTGATGATGCTGGTTATT+CGG - tig0030213:11296-11315 Msa1442790:intron 40.0%
!! TTAGGAGTGCTTTGTCAAAG+AGG - tig0030213:11529-11548 Msa1442790:intron 40.0%
CAACTCATTTGAAGACGGAT+TGG + tig0030213:11562-11581 None:intergenic 40.0%
!! TGCTTTGGAGGATGTTGTTA+AGG - tig0030213:11840-11859 Msa1442790:intron 40.0%
AAACTCAACTCTGCCCTTAA+TGG + tig0030213:12080-12099 None:intergenic 40.0%
CATTCTATGGTCGAGTTCTT+TGG + tig0030213:12129-12148 None:intergenic 40.0%
ACTTGAAGAGAAGGAAAGAG+TGG - tig0030213:12163-12182 Msa1442790:intron 40.0%
!! AGGTGTTGAACAGCAATTTG+TGG - tig0030213:12470-12489 Msa1442790:CDS 40.0%
CATCATTGCACAACTAAAGC+TGG + tig0030213:12688-12707 None:intergenic 40.0%
TGATCGCAGTGACATAAACA+TGG + tig0030213:12768-12787 None:intergenic 40.0%
TAGAGCTAAAGGGAAAAGGT+AGG + tig0030213:12824-12843 None:intergenic 40.0%
!!! ACCTTTTCCCTTTAGCTCTA+TGG - tig0030213:12824-12843 Msa1442790:CDS 40.0%
ACCATAGAGCTAAAGGGAAA+AGG + tig0030213:12828-12847 None:intergenic 40.0%
TGGAAGACCATAGAGCTAAA+GGG + tig0030213:12834-12853 None:intergenic 40.0%
GTGCCATATACACATATTCC+AGG - tig0030213:12888-12907 Msa1442790:intron 40.0%
TGGTCTATCTAAATTGCAGG+CGG - tig0030213:12979-12998 Msa1442790:intron 40.0%
AAATCTATTCCCTTCTGGTG+GGG + tig0030213:13148-13167 None:intergenic 40.0%
GAAATCTATTCCCTTCTGGT+GGG + tig0030213:13149-13168 None:intergenic 40.0%
TGAAATCTATTCCCTTCTGG+TGG + tig0030213:13150-13169 None:intergenic 40.0%
AAAATGTGTTCATCCCTTGC+TGG + tig0030213:13245-13264 None:intergenic 40.0%
TTCAAAAGAAAGGGCTTTGC+AGG + tig0030213:13268-13287 None:intergenic 40.0%
! GAAGCTGCTAATGCATTTTC+AGG - tig0030213:13285-13304 Msa1442790:CDS 40.0%
AACCATGAACTGAGTCTGAA+AGG + tig0030213:13338-13357 None:intergenic 40.0%
CAGTTCATGGTTCATACTCA+AGG - tig0030213:13346-13365 Msa1442790:CDS 40.0%
AAGTGGCAGCAAAGGAAAAA+GGG + tig0030213:13374-13393 None:intergenic 40.0%
AAAGTGGCAGCAAAGGAAAA+AGG + tig0030213:13375-13394 None:intergenic 40.0%
AAGAACGGAGAATGGAAAGA+AGG + tig0030213:13443-13462 None:intergenic 40.0%
TGATTGTAGATTCTTGGTGG+GGG - tig0030213:13479-13498 Msa1442790:CDS 40.0%
! GAGTGCTCTAAGTTTAGACT+TGG + tig0030213:13851-13870 None:intergenic 40.0%
CTTACTCACGACAAACTCAA+TGG - tig0030213:13934-13953 Msa1442790:CDS 40.0%
AATAACCGTGAGAAACACCA+AGG + tig0030213:13970-13989 None:intergenic 40.0%
TGCTTGGGGATGAACTAATT+AGG - tig0030213:14164-14183 Msa1442790:CDS 40.0%
AGGCTGTAAATCTGGTAGAT+TGG - tig0030213:14184-14203 Msa1442790:CDS 40.0%
ACTTGAGGTCTTCTAGACTA+AGG - tig0030213:14459-14478 Msa1442790:CDS 40.0%
CTTGAGGTCTTCTAGACTAA+GGG - tig0030213:14460-14479 Msa1442790:CDS 40.0%
TTGAGAACAGAGAAGACTTG+AGG - tig0030213:14519-14538 Msa1442790:CDS 40.0%
TGAGAACAGAGAAGACTTGA+GGG - tig0030213:14520-14539 Msa1442790:CDS 40.0%
ATAGGCCTAGATATGTATGC+TGG - tig0030213:14549-14568 Msa1442790:exon 40.0%
ACTTTGTTGGAATTCAGCAG+CGG - tig0030213:14594-14613 Msa1442790:five_prime_UTR 40.0%
TAATGTAGTAAAGCCGGTGT+TGG - tig0030213:14780-14799 Msa1442790:intron 40.0%
! TGCTTCCATGAAGGCATAAA+AGG + tig0030213:14878-14897 None:intergenic 40.0%
TATGTGGAATGCTTCCATGA+AGG + tig0030213:14887-14906 None:intergenic 40.0%
TGCAATTTCCCAGTTTGAAC+AGG - tig0030213:14992-15011 Msa1442790:five_prime_UTR 40.0%
GCAATTTCCCAGTTTGAACA+GGG - tig0030213:14993-15012 Msa1442790:five_prime_UTR 40.0%
! TGAAGCGAAATAAGAGCGTG+AGG + tig0030213:9955-9974 None:intergenic 45.0%
TTCAATTAAATGTCCGGCGC+CGG - tig0030213:10391-10410 Msa1442790:CDS 45.0%
TGCTTGCTCAAGAAGCCATA+CGG - tig0030213:10620-10639 Msa1442790:CDS 45.0%
! ATACGGAAGCGCGATGAATT+CGG - tig0030213:10637-10656 Msa1442790:intron 45.0%
TAACAGCATCATCACGCAAC+CGG + tig0030213:10663-10682 None:intergenic 45.0%
! GTTGCGTGATGATGCTGTTA+GGG - tig0030213:10663-10682 Msa1442790:intron 45.0%
! TGATGATGCTGTTAGGGAGA+AGG - tig0030213:10669-10688 Msa1442790:intron 45.0%
! AGCTTCTAGAAGAAACTGCG+AGG - tig0030213:10704-10723 Msa1442790:intron 45.0%
AGAAACTGCGAGGCAATTAG+AGG - tig0030213:10714-10733 Msa1442790:intron 45.0%
TGCGAGGCAATTAGAGGAAT+CGG - tig0030213:10720-10739 Msa1442790:intron 45.0%
!!! GGTAAGGTGAATGGTTTTGG+TGG - tig0030213:10820-10839 Msa1442790:intron 45.0%
!!! GTGAATGGTTTTGGTGGAAG+TGG - tig0030213:10826-10845 Msa1442790:intron 45.0%
GTCGCAGAAATATACCGGTA+TGG - tig0030213:10864-10883 Msa1442790:intron 45.0%
GAAATATACCGGTATGGCTG+CGG - tig0030213:10870-10889 Msa1442790:intron 45.0%
TTAAGGCTAGGGATCAAGCT+AGG - tig0030213:10962-10981 Msa1442790:intron 45.0%
TAAGGCTAGGGATCAAGCTA+GGG - tig0030213:10963-10982 Msa1442790:intron 45.0%
CTAGGGAACAGATTGAACAG+AGG - tig0030213:10980-10999 Msa1442790:intron 45.0%
TGCTATTGAGGTTTCGCAGT+TGG - tig0030213:11014-11033 Msa1442790:intron 45.0%
AAGAAAACTGCAGCCGTTGA+GGG - tig0030213:11072-11091 Msa1442790:intron 45.0%
! GGAGAGGGATTTGGTTGTTA+AGG - tig0030213:11098-11117 Msa1442790:intron 45.0%
GCTTTCTGAGTCGTTGTTTG+TGG - tig0030213:11320-11339 Msa1442790:intron 45.0%
GTTGTTTGTGGCGCAAGAAA+CGG - tig0030213:11332-11351 Msa1442790:intron 45.0%
GAGTGCTTTGTCAAAGAGGA+TGG - tig0030213:11533-11552 Msa1442790:intron 45.0%
TCTTTACGTATCCACTGTGC+AGG - tig0030213:11813-11832 Msa1442790:intron 45.0%
! GGTAATTTGCGACAGGCATT+TGG - tig0030213:12309-12328 Msa1442790:intron 45.0%
TGAACAGCAATTTGTGGCAC+AGG - tig0030213:12476-12495 Msa1442790:CDS 45.0%
AGCAATTTGTGGCACAGGTA+TGG - tig0030213:12481-12500 Msa1442790:CDS 45.0%
CTGGAAGACCATAGAGCTAA+AGG + tig0030213:12835-12854 None:intergenic 45.0%
AGGGGCTGAAATAAAAGAGG+GGG + tig0030213:13087-13106 None:intergenic 45.0%
CAGGGGCTGAAATAAAAGAG+GGG + tig0030213:13088-13107 None:intergenic 45.0%
GCAGGGGCTGAAATAAAAGA+GGG + tig0030213:13089-13108 None:intergenic 45.0%
TGCAGGGGCTGAAATAAAAG+AGG + tig0030213:13090-13109 None:intergenic 45.0%
!!! GCCCCTGCAGATTTTTTAGA+TGG - tig0030213:13101-13120 Msa1442790:CDS 45.0%
AATCTATTCCCTTCTGGTGG+GGG + tig0030213:13147-13166 None:intergenic 45.0%
AGTTCGATGTGTGTCATGCT+AGG - tig0030213:13188-13207 Msa1442790:intron 45.0%
GCTGGAGATGAGAAGTGAAA+GGG + tig0030213:13227-13246 None:intergenic 45.0%
TGCTGGAGATGAGAAGTGAA+AGG + tig0030213:13228-13247 None:intergenic 45.0%
TTCACTTCTCATCTCCAGCA+AGG - tig0030213:13228-13247 Msa1442790:intron 45.0%
TCACTTCTCATCTCCAGCAA+GGG - tig0030213:13229-13248 Msa1442790:intron 45.0%
TGAAAGGAGTAACTCAGCAG+AGG + tig0030213:13322-13341 None:intergenic 45.0%
CTCCTTTCAGACTCAGTTCA+TGG - tig0030213:13333-13352 Msa1442790:CDS 45.0%
AGTGGCAGCAAAGGAAAAAG+GGG + tig0030213:13373-13392 None:intergenic 45.0%
AGTTACGAAAGTGGCAGCAA+AGG + tig0030213:13382-13401 None:intergenic 45.0%
CATTGACCAGGAGAGAAGAA+CGG + tig0030213:13458-13477 None:intergenic 45.0%
TCCAAGCTAAAGCTCAAGCA+TGG - tig0030213:13540-13559 Msa1442790:CDS 45.0%
! ACCATGCTTGAGCTTTAGCT+TGG + tig0030213:13544-13563 None:intergenic 45.0%
! TAAACTTAGAGCACTCCGCT+TGG - tig0030213:13855-13874 Msa1442790:CDS 45.0%
TCGTGAGTAAGAAGATGCCA+TGG + tig0030213:13925-13944 None:intergenic 45.0%
TCAATGGATCCTTTCAGCCT+TGG - tig0030213:13950-13969 Msa1442790:CDS 45.0%
TGAGAAACACCAAGGCTGAA+AGG + tig0030213:13962-13981 None:intergenic 45.0%
!! TTCAGCCTTGGTGTTTCTCA+CGG - tig0030213:13962-13981 Msa1442790:CDS 45.0%
TTGGTACAGTTGCCATTCGT+TGG - tig0030213:14130-14149 Msa1442790:CDS 45.0%
AGAGGCAAAGCAATCCATGT+TGG - tig0030213:14346-14365 Msa1442790:CDS 45.0%
AGATTTCTCTGCTGCATCTC+TGG + tig0030213:14426-14445 None:intergenic 45.0%
CTCTCAAGTTAGCAGACTTG+AGG - tig0030213:14444-14463 Msa1442790:CDS 45.0%
TTCTAGACTAAGGGACAGAG+TGG - tig0030213:14469-14488 Msa1442790:CDS 45.0%
GAGAACAGAGAAGACTTGAG+GGG - tig0030213:14521-14540 Msa1442790:CDS 45.0%
CATGGCCAGCATACATATCT+AGG + tig0030213:14557-14576 None:intergenic 45.0%
CTAGATATGTATGCTGGCCA+TGG - tig0030213:14555-14574 Msa1442790:exon 45.0%
GACTGATACGCAACAGCAAA+CGG - tig0030213:14616-14635 Msa1442790:five_prime_UTR 45.0%
GCAAACGGCTTCTAACGAAA+TGG - tig0030213:14631-14650 Msa1442790:five_prime_UTR 45.0%
TGACAATGATCGACCAACAC+CGG + tig0030213:14796-14815 None:intergenic 45.0%
TGTCATGTTGCAGCAGCATT+TGG - tig0030213:14811-14830 Msa1442790:intron 45.0%
TTTCCCAGTTTGAACAGGGT+CGG - tig0030213:14997-15016 Msa1442790:five_prime_UTR 45.0%
TTTCCGACCCTGTTCAAACT+GGG + tig0030213:15003-15022 None:intergenic 45.0%
ATTTCCGACCCTGTTCAAAC+TGG + tig0030213:15004-15023 None:intergenic 45.0%
! TAAGAGCGTGAGGAGGAAGA+GGG + tig0030213:9945-9964 None:intergenic 50.0%
! ATAAGAGCGTGAGGAGGAAG+AGG + tig0030213:9946-9965 None:intergenic 50.0%
! AGCGAAATAAGAGCGTGAGG+AGG + tig0030213:9952-9971 None:intergenic 50.0%
GGGATTGATGTGGATGAGGA+AGG + tig0030213:10058-10077 None:intergenic 50.0%
ACAGGGGATTGATGTGGATG+AGG + tig0030213:10062-10081 None:intergenic 50.0%
GGTACGTTGTTCTCACGTCA+CGG - tig0030213:10257-10276 Msa1442790:three_prime_UTR 50.0%
ACGGAGACTTCATCCTGTGA+AGG + tig0030213:10493-10512 None:intergenic 50.0%
GAATTCATCGCGCTTCCGTA+TGG + tig0030213:10638-10657 None:intergenic 50.0%
! GGTTGCGTGATGATGCTGTT+AGG - tig0030213:10662-10681 Msa1442790:intron 50.0%
TGCTGTTAGGGAGAAGGAAG+AGG - tig0030213:10675-10694 Msa1442790:intron 50.0%
GCAATTAGAGGAATCGGCGA+AGG - tig0030213:10726-10745 Msa1442790:intron 50.0%
ATAAGTCACCGCAGCCATAC+CGG + tig0030213:10881-10900 None:intergenic 50.0%
GAAGAAAACTGCAGCCGTTG+AGG - tig0030213:11071-11090 Msa1442790:intron 50.0%
ATCCCTCTCCAAACCCTCAA+CGG + tig0030213:11088-11107 None:intergenic 50.0%
TGAGGGTTTGGAGAGGGATT+TGG - tig0030213:11089-11108 Msa1442790:intron 50.0%
GAGTGAGGGTTTGCAGTTGA+AGG - tig0030213:11164-11183 Msa1442790:intron 50.0%
TGAGAATGTACGCGCCTCTT+TGG - tig0030213:11362-11381 Msa1442790:intron 50.0%
AGATTCCATCCCAGCCAAAG+AGG + tig0030213:11379-11398 None:intergenic 50.0%
!! TAGCGGCAGAAAATGGGTTG+AGG - tig0030213:11586-11605 Msa1442790:CDS 50.0%
!! AGCGGCAGAAAATGGGTTGA+GGG - tig0030213:11587-11606 Msa1442790:CDS 50.0%
!! GAAAATGGGTTGAGGGAGGT+TGG - tig0030213:11594-11613 Msa1442790:CDS 50.0%
TAAGCAGCACATAGAAGCCC+AGG - tig0030213:12103-12122 Msa1442790:intron 50.0%
ATGGTCGAGTTCTTTGGCCT+GGG + tig0030213:12123-12142 None:intergenic 50.0%
TATGGTCGAGTTCTTTGGCC+TGG + tig0030213:12124-12143 None:intergenic 50.0%
ACTCGACCATAGAATGCACC+AGG - tig0030213:12133-12152 Msa1442790:intron 50.0%
! TCTCTTCAAGTTCCTCCACC+TGG + tig0030213:12154-12173 None:intergenic 50.0%
GGTGGAGGAACTTGAAGAGA+AGG - tig0030213:12154-12173 Msa1442790:intron 50.0%
GCAGATTGAGGGGCTAATGA+TGG - tig0030213:12377-12396 Msa1442790:intron 50.0%
!! GGGGCTAATGATGGACATTG+CGG - tig0030213:12386-12405 Msa1442790:intron 50.0%
ATTGCAGGCGGATAGTGAAG+TGG - tig0030213:12991-13010 Msa1442790:intron 50.0%
!!! AATTGCTTTTGGGGCTGCCT+TGG - tig0030213:13017-13036 Msa1442790:intron 50.0%
TGAAATAAAAGAGGGGGGGG+GGG + tig0030213:13081-13100 None:intergenic 50.0%
CTGAAATAAAAGAGGGGGGG+GGG + tig0030213:13082-13101 None:intergenic 50.0%
GCTGAAATAAAAGAGGGGGG+GGG + tig0030213:13083-13102 None:intergenic 50.0%
GGCTGAAATAAAAGAGGGGG+GGG + tig0030213:13084-13103 None:intergenic 50.0%
GGGCTGAAATAAAAGAGGGG+GGG + tig0030213:13085-13104 None:intergenic 50.0%
GGGGCTGAAATAAAAGAGGG+GGG + tig0030213:13086-13105 None:intergenic 50.0%
! TCATGTTTTCCCCCACCAGA+AGG - tig0030213:13135-13154 Msa1442790:intron 50.0%
! CATGTTTTCCCCCACCAGAA+GGG - tig0030213:13136-13155 Msa1442790:intron 50.0%
CAGGAGAGAAGAACGGAGAA+TGG + tig0030213:13451-13470 None:intergenic 50.0%
CATTCTCCGTTCTTCTCTCC+TGG - tig0030213:13449-13468 Msa1442790:CDS 50.0%
GCTCATCTTTGATGCAGCCA+TGG - tig0030213:13905-13924 Msa1442790:CDS 50.0%
GCTCAAGCAGGAACTTGAAG+AGG - tig0030213:14328-14347 Msa1442790:CDS 50.0%
AAGACTTGAGGGGCCGAAAT+AGG - tig0030213:14531-14550 Msa1442790:CDS 50.0%
AGAGACAGAGACGGTAGCGA+TGG + tig0030213:9997-10016 None:intergenic 55.0%
GTGAGCACAGGGGATTGATG+TGG + tig0030213:10068-10087 None:intergenic 55.0%
TATTGTGGGCGTGAGCACAG+GGG + tig0030213:10078-10097 None:intergenic 55.0%
GTATTGTGGGCGTGAGCACA+GGG + tig0030213:10079-10098 None:intergenic 55.0%
CGAATCGGCATCTAAGTCGC+CGG + tig0030213:10413-10432 None:intergenic 55.0%
! CGGCGACTTAGATGCCGATT+CGG - tig0030213:10411-10430 Msa1442790:CDS 55.0%
CAAGCTCGGCGAGAATCTCA+CGG + tig0030213:10525-10544 None:intergenic 55.0%
GATTCTCGCCGAGCTTGATC+AGG - tig0030213:10528-10547 Msa1442790:CDS 55.0%
!!! CTCCGTTTTGGCTTTCTCGG+CGG + tig0030213:10572-10591 None:intergenic 55.0%
TAGAGGAATCGGCGAAGGAG+CGG - tig0030213:10731-10750 Msa1442790:intron 55.0%
GGAGCGGCAAGGATTACGAT+CGG - tig0030213:10747-10766 Msa1442790:intron 55.0%
! CCGGTATATTTCTGCGACCG+CGG + tig0030213:10862-10881 None:intergenic 55.0%
CCGCGGTCGCAGAAATATAC+CGG - tig0030213:10859-10878 Msa1442790:intron 55.0%
GGTATGGCTGCGGTGACTTA+TGG - tig0030213:10880-10899 Msa1442790:intron 55.0%
AACTGCAGCCGTTGAGGGTT+TGG - tig0030213:11077-11096 Msa1442790:intron 55.0%
AGCCGTTGAGGGTTTGGAGA+GGG - tig0030213:11083-11102 Msa1442790:intron 55.0%
AATGTACGCGCCTCTTTGGC+TGG - tig0030213:11366-11385 Msa1442790:intron 55.0%
ATGTACGCGCCTCTTTGGCT+GGG - tig0030213:11367-11386 Msa1442790:intron 55.0%
!! GGCAGAAAATGGGTTGAGGG+AGG - tig0030213:11590-11609 Msa1442790:CDS 55.0%
TACGTATCCACTGTGCAGGC+TGG - tig0030213:11817-11836 Msa1442790:intron 55.0%
CGACCATAGAATGCACCAGG+TGG - tig0030213:12136-12155 Msa1442790:intron 55.0%
CCTCCACCTGGTGCATTCTA+TGG + tig0030213:12142-12161 None:intergenic 55.0%
CCATAGAATGCACCAGGTGG+AGG - tig0030213:12139-12158 Msa1442790:intron 55.0%
! TGTCATGTGGTCATGGGCTG+TGG - tig0030213:12287-12306 Msa1442790:intron 55.0%
! GTCATGTGGTCATGGGCTGT+GGG - tig0030213:12288-12307 Msa1442790:intron 55.0%
! GGCTGTGGGTAATTTGCGAC+AGG - tig0030213:12302-12321 Msa1442790:intron 55.0%
TGCAGGACACAACACTACCC+TGG + tig0030213:12909-12928 None:intergenic 55.0%
GTAGTGTTGTGTCCTGCAGC+TGG - tig0030213:12911-12930 Msa1442790:intron 55.0%
AAATAAAAGAGGGGGGGGGG+GGG + tig0030213:13079-13098 None:intergenic 55.0%
GAAATAAAAGAGGGGGGGGG+GGG + tig0030213:13080-13099 None:intergenic 55.0%
GCAGTTGTCAACGCTCAAGC+AGG - tig0030213:14316-14335 Msa1442790:CDS 55.0%
ATGTATGCTGGCCATGGCAG+TGG - tig0030213:14561-14580 Msa1442790:exon 55.0%
! TGGCTCGGCATGGACTTTGT+TGG - tig0030213:14581-14600 Msa1442790:five_prime_UTR 55.0%
GGTATTGTGGGCGTGAGCAC+AGG + tig0030213:10080-10099 None:intergenic 60.0%
!! GACGTCGCTGAGCACCGAAT+CGG + tig0030213:10428-10447 None:intergenic 60.0%
CGCCGCCGAGAAAGCCAAAA+CGG - tig0030213:10567-10586 Msa1442790:CDS 60.0%
! GGAAGCGCGATGAATTCGGC+CGG - tig0030213:10641-10660 Msa1442790:intron 60.0%
!! GAAGTGGAAGCGCTTTGCCG+CGG - tig0030213:10842-10861 Msa1442790:intron 60.0%
CAGCCGTTGAGGGTTTGGAG+AGG - tig0030213:11082-11101 Msa1442790:intron 60.0%
! CAAAGCACCAGCCTGCACAG+TGG + tig0030213:11827-11846 None:intergenic 60.0%
CACTGTGCAGGCTGGTGCTT+TGG - tig0030213:11825-11844 Msa1442790:intron 60.0%
TGTGCAGGCTGGTGCTTTGG+AGG - tig0030213:11828-11847 Msa1442790:intron 60.0%
GCAGAGCAAGAAGCTGCTGC+AGG - tig0030213:12444-12463 Msa1442790:intron 60.0%
CAAGAAGCTGCTGCAGGCAC+AGG - tig0030213:12450-12469 Msa1442790:intron 60.0%
AATAAAAGAGGGGGGGGGGG+GGG + tig0030213:13078-13097 None:intergenic 60.0%
GTTCATCCCCAAGCAGCGCA+GGG + tig0030213:14159-14178 None:intergenic 60.0%
AGTTCATCCCCAAGCAGCGC+AGG + tig0030213:14160-14179 None:intergenic 60.0%
TGCTGCATCTCTGGCTGCCA+TGG + tig0030213:14417-14436 None:intergenic 60.0%
!! TTCGGTGCTCAGCGACGTCG+AGG - tig0030213:10429-10448 Msa1442790:CDS 65.0%
CTCAGCGACGTCGAGGACGA+CGG - tig0030213:10436-10455 Msa1442790:CDS 65.0%
GAATCGGCGAAGGAGCGGCA+AGG - tig0030213:10736-10755 Msa1442790:intron 65.0%
ACGCGCCTCTTTGGCTGGGA+TGG - tig0030213:11371-11390 Msa1442790:intron 65.0%
ATAAAAGAGGGGGGGGGGGG+GGG + tig0030213:13077-13096 None:intergenic 65.0%
AGCGCAGGGCAGCCAACGAA+TGG + tig0030213:14145-14164 None:intergenic 65.0%
TTGGCTGCCCTGCGCTGCTT+GGG - tig0030213:14149-14168 Msa1442790:CDS 65.0%
TGCTGGCCATGGCAGTGGCT+CGG - tig0030213:14566-14585 Msa1442790:exon 65.0%
TCCATGCCGAGCCACTGCCA+TGG + tig0030213:14575-14594 None:intergenic 65.0%
GGCATCTAAGTCGCCGGCGC+CGG + tig0030213:10407-10426 None:intergenic 70.0%
GTGTCCTGCAGCTGGAGCGC+TGG - tig0030213:12919-12938 Msa1442790:intron 70.0%
TGGTCCAGCGCTCCAGCTGC+AGG + tig0030213:12926-12945 None:intergenic 70.0%
TAAAAGAGGGGGGGGGGGGG+GGG + tig0030213:13076-13095 None:intergenic 70.0%
GTTGGCTGCCCTGCGCTGCT+TGG - tig0030213:14148-14167 Msa1442790:CDS 70.0%
TGGCTGCCCTGCGCTGCTTG+GGG - tig0030213:14150-14169 Msa1442790:CDS 70.0%
! GCCATGGCAGTGGCTCGGCA+TGG - tig0030213:14571-14590 Msa1442790:five_prime_UTR 70.0%
AAAAGAGGGGGGGGGGGGGG+GGG + tig0030213:13075-13094 None:intergenic 75.0%
! GGGGGGGGGGGGGGGAATGA+GGG + tig0030213:13066-13085 None:intergenic 80.0%
! AAAGAGGGGGGGGGGGGGGG+GGG + tig0030213:13074-13093 None:intergenic 80.0%
! GGGGGGGGGGGGGGGGAATG+AGG + tig0030213:13067-13086 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
tig0030213 gene 9912 15055 9912 ID=Msa1442790;Name=Msa1442790
tig0030213 mRNA 9912 15055 9912 ID=Msa1442790-mRNA-1;Parent=Msa1442790;Name=Msa1442790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=400|0.42|0.62|0.75|0.85|0.75|8|379|788
tig0030213 exon 9912 10647 9912 ID=Msa1442790-mRNA-1:exon:13558;Parent=Msa1442790-mRNA-1
tig0030213 exon 11390 11479 11390 ID=Msa1442790-mRNA-1:exon:13557;Parent=Msa1442790-mRNA-1
tig0030213 exon 11572 11757 11572 ID=Msa1442790-mRNA-1:exon:13556;Parent=Msa1442790-mRNA-1
tig0030213 exon 12470 12691 12470 ID=Msa1442790-mRNA-1:exon:13555;Parent=Msa1442790-mRNA-1
tig0030213 exon 12771 12882 12771 ID=Msa1442790-mRNA-1:exon:13554;Parent=Msa1442790-mRNA-1
tig0030213 exon 13056 13132 13056 ID=Msa1442790-mRNA-1:exon:13553;Parent=Msa1442790-mRNA-1
tig0030213 exon 13245 14754 13245 ID=Msa1442790-mRNA-1:exon:13552;Parent=Msa1442790-mRNA-1
tig0030213 exon 14843 15055 14843 ID=Msa1442790-mRNA-1:exon:13551;Parent=Msa1442790-mRNA-1
tig0030213 five_prime_UTR 14843 15055 14843 ID=Msa1442790-mRNA-1:five_prime_utr;Parent=Msa1442790-mRNA-1
tig0030213 five_prime_UTR 14568 14754 14568 ID=Msa1442790-mRNA-1:five_prime_utr;Parent=Msa1442790-mRNA-1
tig0030213 CDS 13245 14567 13245 ID=Msa1442790-mRNA-1:cds;Parent=Msa1442790-mRNA-1
tig0030213 CDS 13056 13132 13056 ID=Msa1442790-mRNA-1:cds;Parent=Msa1442790-mRNA-1
tig0030213 CDS 12771 12882 12771 ID=Msa1442790-mRNA-1:cds;Parent=Msa1442790-mRNA-1
tig0030213 CDS 12470 12691 12470 ID=Msa1442790-mRNA-1:cds;Parent=Msa1442790-mRNA-1
tig0030213 CDS 11572 11757 11572 ID=Msa1442790-mRNA-1:cds;Parent=Msa1442790-mRNA-1
tig0030213 CDS 11390 11479 11390 ID=Msa1442790-mRNA-1:cds;Parent=Msa1442790-mRNA-1
tig0030213 CDS 10291 10647 10291 ID=Msa1442790-mRNA-1:cds;Parent=Msa1442790-mRNA-1
tig0030213 three_prime_UTR 9912 10290 9912 ID=Msa1442790-mRNA-1:three_prime_utr;Parent=Msa1442790-mRNA-1
Gene Sequence

>Msa1442790

ATGTCCGGCGCCGGCGACTTAGATGCCGATTCGGTGCTCAGCGACGTCGAGGACGACGGCGCCGATCCAATTCCGATCACATCAAATTCACCTTCACAGGATGAAGTCTCCGTTGAAAAATTCCGTGAGATTCTCGCCGAGCTTGATCAGGAAAAGCAAGCACGCATCGCCGCCGAGAAAGCCAAAACGGAGTTACAGACTTCATTCAACCGATTAAAGGTGCTTGCTCAAGAAGCCATACGGAAGCGCGATGAATTCGGCCGGTTGCGTGATGATGCTGTTAGGGAGAAGGAAGAGGCTACGAAGCTTCTAGAAGAAACTGCGAGGCAATTAGAGGAATCGGCGAAGGAGCGGCAAGGATTACGATCGGAGATTGAGAAATCGAGTCATATGATGGTTACTGGAATTGAGAAGATTTCTGGTAAGGTGAATGGTTTTGGTGGAAGTGGAAGCGCTTTGCCGCGGTCGCAGAAATATACCGGTATGGCTGCGGTGACTTATGGTGTTATAAAGAGAGCGAATGAGATTGTTGAAGAGTTGTTGAAACAGAATGATGCAAGTGTTAAGGCTAGGGATCAAGCTAGGGAACAGATTGAACAGAGGAATTATGAGATTGCTATTGAGGTTTCGCAGTTGGAAGCAACTATTAGTGATTTGAGAGATGAGGTTGCGAAGAAAACTGCAGCCGTTGAGGGTTTGGAGAGGGATTTGGTTGTTAAGGATGAGAAGTTGAATGAGGTTTCTGAGAGTTTAAGGAAGGAAGAGAGTGAGGGTTTGCAGTTGAAGGAGTTTGTTAATAATTTGGAATCAAAGATGGAATCGTTGAGGCCTTTGTTGATTGATCAGTTGAATTTTGTGTCTAAGATTCACAACCAGATTTGTAGTGTTTATAAGATCGTTGATGATGCTGGTTATTCGGAGCTTTCTGAGTCGTTGTTTGTGGCGCAAGAAACGGATATTGATGAGAATGTACGCGCCTCTTTGGCTGGGATGGAATCTATACATGAGTTGACTAGGATTGTTGTTCAAAAAGTTAGGGATTTGGTTGAGGAGAAGAATCGTGAGATCCAGAATTTAGATGAGACTGTGAATAGGTTAGTTAAGGAAAAGGATCAAATTGGTTCTTTGCTTAGGAGTGCTTTGTCAAAGAGGATGGCATCCAATCCGTCTTCAAATGAGTTGTTTTTAGCGGCAGAAAATGGGTTGAGGGAGGTTGGTATAGATTTCAAATTTAGTAAGATTCTTGGAGATGGAAAGCTTGCAGCTTCAAATGACAAGTCAAAAAAAACGGAAAAAGAAGAAGAGGATGAAATATACACTTTGGCTGGTGCTTTGGAGGATGTTGTTAAGGCATCTCAGCTTGAGATCATTGAGCTGCAGCACACTGTGAATGAATTAAGGGCAGAGTTGAGTTTACTTAAGCAGCACATAGAAGCCCAGGCCAAAGAACTCGACCATAGAATGCACCAGGTGGAGGAACTTGAAGAGAAGGAAAGAGTGGCAAATGAAAATAATGTATGTTTTGTCATGTGGTCATGGGCTGTGGGTAATTTGCGACAGGCATTTGGTGTCAATACTTTTCTATCTCTTAGAATCAATTGTCTCTTTATAATGCAGATTGAGGGGCTAATGATGGACATTGCGGCTGCTGAAGAAGAAATTAACAGATGGAAATTAGCAGCAGAGCAAGAAGCTGCTGCAGGCACAGGTGTTGAACAGCAATTTGTGGCACAGGTTGCTGTGCTTATCCCTTTCACTTCTCATCTCCAGCAAGGGATGAACACATTTTCCTGCAAAGCCCTTTCTTTTGAAGCTGCTAATGCATTTTCAGGCAGCATCTTAGCCTCTGCTGAGTTACTCCTTTCAGACTCAGTTCATGGTTCATACTCAAGGGCCCCTTTTTCCTTTGCTGCCACTTTCATTCTTGGTGGGGGTGTAAATGAGCTGAATGAGTTATTCAAGTATGGTTTCTTCCAAGCTAAAGCTCAAGCATGGTTTCTTCAAGCTCAATTGTCAACGCTCAAGCAGGAACTTGAAGAGGCAAAGCAATCCATGTTGGAATCTGAGAAGAAATTAAAATTCAAAGAAGAGACAGCAGCTGCTGCCATGGCAGCCAGAGATGCAGCAGAGAAATCTCTCAAGTTAGCAGACTTGAGGTCTTCTAGACTAAGGGACAGAGTGGAAGAGCTCACTCATCAGCTCGAAGAGTTTGAGAACAGAGAAGACTTGAGGGGCCGAAATAGGCCTAGATATGTATGCTGGCCATGGCAGTGGCTCGGCATGGACTTTGTTGGAATTCAGCAGCGGACTGATACGCAACAGCAAACGGCTTCTAACGAAATGGAGCTTTCCGAACCTCTCTTATAA
Protein sequence

>Msa1442790

MSGAGDLDADSVLSDVEDDGADPIPITSNSPSQDEVSVEKFREILAELDQEKQARIAAEKAKTELQTSFNRLKVLAQEAIRKRDEFGRLRDDAVREKEEATKLLEETARQLEESAKERQGLRSEIEKSSHMMVTGIEKISGKVNGFGGSGSALPRSQKYTGMAAVTYGVIKRANEIVEELLKQNDASVKARDQAREQIEQRNYEIAIEVSQLEATISDLRDEVAKKTAAVEGLERDLVVKDEKLNEVSESLRKEESEGLQLKEFVNNLESKMESLRPLLIDQLNFVSKIHNQICSVYKIVDDAGYSELSESLFVAQETDIDENVRASLAGMESIHELTRIVVQKVRDLVEEKNREIQNLDETVNRLVKEKDQIGSLLRSALSKRMASNPSSNELFLAAENGLREVGIDFKFSKILGDGKLAASNDKSKKTEKEEEDEIYTLAGALEDVVKASQLEIIELQHTVNELRAELSLLKQHIEAQAKELDHRMHQVEELEEKERVANENNVCFVMWSWAVGNLRQAFGVNTFLSLRINCLFIMQIEGLMMDIAAAEEEINRWKLAAEQEAAAGTGVEQQFVAQVAVLIPFTSHLQQGMNTFSCKALSFEAANAFSGSILASAELLLSDSVHGSYSRAPFSFAATFILGGGVNELNELFKYGFFQAKAQAWFLQAQLSTLKQELEEAKQSMLESEKKLKFKEETAAAAMAARDAAEKSLKLADLRSSRLRDRVEELTHQLEEFENREDLRGRNRPRYVCWPWQWLGMDFVGIQQRTDTQQQTASNEMELSEPLL*