AlfalfaGEDB | Msa0240650

M. sativa cultivar zhongmu-4 / Msa0240650

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF05879.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240650	XP_013462990.1	95.798	833	7	2	1	805	1	833	0.0	1637

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240650	sp\|Q9FKE9\|RHD32_ARATH	64.897	829	257	5	6	803	5	830	0.0	1092

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240650	A0A072VFT5	95.798	833	7	2	1	805	1	833	0.0	1637

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003220	Msa0240650	0.837650	4.587173e-57	-8.615850e-47
Msa0034400	Msa0240650	0.811531	6.682401e-51	-8.615850e-47
Msa0046560	Msa0240650	0.819963	8.810854e-53	-8.615850e-47
Msa0047640	Msa0240650	0.815321	9.816432e-52	-8.615850e-47
Msa0054820	Msa0240650	0.817864	2.643694e-52	-8.615850e-47
Msa0056450	Msa0240650	0.809201	2.127015e-50	-8.615850e-47
Msa0064920	Msa0240650	0.823704	1.200338e-53	-8.615850e-47
Msa0083090	Msa0240650	0.819755	9.829996e-53	-8.615850e-47
Msa0083130	Msa0240650	0.803224	3.861071e-49	-8.615850e-47
Msa0084340	Msa0240650	0.815259	1.013145e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0240650	MtrunA17_Chr2g0291921	95.798	833	7	2	1	805	1	833	1637
Msa0240650	MtrunA17_Chr8g0342051	62.824	772	254	5	8	750	7	774	1006
Msa0240650	MtrunA17_Chr2g0291911	71.429	679	152	7	3	651	5	671	926

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0240650	AT5G45160.1	64.897	829	257	5	6	803	5	830	1092
Msa0240650	AT3G13870.1	64.136	764	243	3	5	740	1	761	1009
Msa0240650	AT1G72960.1	60.710	789	277	4	8	768	9	792	984
Msa0240650	AT3G13870.2	63.022	695	226	3	74	740	6	697	897
Msa0240650	AT1G72960.2	62.312	666	220	3	9	646	10	672	851

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Find 187 sgRNAs with CRISPR-Local

Find 790 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAATGTTGTCTTCCG+TGG	0.561546	2_2:+16005701	None:intergenic
AAACGGTTACCGCTAGATTG+AGG	0.573524	2_2:+16008585	None:intergenic
AAACTGATATCTCAGCAACT+AGG	0.597137	2_2:+15996446	None:intergenic
AAATCCATAGCAATTGTGCA+CGG	0.647564	2_2:+16007866	None:intergenic
AAATGCAAAACGAAAGCAAT+TGG	0.416830	2_2:-16003489	Msa0240650:CDS
AAATTCATTGAAACCAAATA+TGG	0.356321	2_2:+15997369	None:intergenic
AAATTGAATAGTGTGAAGTT+TGG	0.401230	2_2:+16008763	None:intergenic
AACACTAGATAGACCCGTAT+TGG	0.520141	2_2:+15996598	None:intergenic
AAGAAGGAGGAAAGGACACC+TGG	0.510045	2_2:-16000435	Msa0240650:CDS
AAGAGACTACGCTAGAAAAT+TGG	0.352199	2_2:-16000296	Msa0240650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGATGAAATTATCGAGAC+CGG	+	chr2_2:15996604-15996623	None:intergenic	30.0%
ACAATTGCTATGGATTTAGA+GGG	-	chr2_2:15997403-15997422	Msa0240650:CDS	30.0%
GAGATTCACATATAGTGAAT+CGG	-	chr2_2:15997529-15997548	Msa0240650:intron	30.0%
TAGTCATGTATCTTACGATT+CGG	+	chr2_2:15997567-15997586	None:intergenic	30.0%
AATGACAAAAAACATGTGCT+TGG	-	chr2_2:15997698-15997717	Msa0240650:intron	30.0%
GACAAAAAAAGAAAAGAGGT+TGG	-	chr2_2:15997733-15997752	Msa0240650:intron	30.0%
AGAGATTGATTAGACTGAAT+CGG	-	chr2_2:15997773-15997792	Msa0240650:intron	30.0%
AATGTATCGGAATTCAAATG+AGG	-	chr2_2:15997806-15997825	Msa0240650:intron	30.0%
AAACAGACAAATATGCAAAC+AGG	+	chr2_2:15998141-15998160	None:intergenic	30.0%
TAACTAATTCTCTCTCCTAA+AGG	+	chr2_2:15998780-15998799	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	15996417	16008868	15996417	ID=Msa0240650;Name=Msa0240650
chr2_2	mRNA	15996417	16008868	15996417	ID=Msa0240650-mRNA-1;Parent=Msa0240650;Name=Msa0240650-mRNA-1;_AED=0.19;_eAED=0.19;_QI=117\|0.90\|0.90\|1\|1\|1\|22\|94\|805
chr2_2	exon	15996417	15996798	15996417	ID=Msa0240650-mRNA-1:exon:6587;Parent=Msa0240650-mRNA-1
chr2_2	exon	15997156	15997252	15997156	ID=Msa0240650-mRNA-1:exon:6586;Parent=Msa0240650-mRNA-1
chr2_2	exon	15997355	15997449	15997355	ID=Msa0240650-mRNA-1:exon:6585;Parent=Msa0240650-mRNA-1
chr2_2	exon	15998793	15998897	15998793	ID=Msa0240650-mRNA-1:exon:6584;Parent=Msa0240650-mRNA-1
chr2_2	exon	15998981	15999151	15998981	ID=Msa0240650-mRNA-1:exon:6583;Parent=Msa0240650-mRNA-1
chr2_2	exon	15999257	15999353	15999257	ID=Msa0240650-mRNA-1:exon:6582;Parent=Msa0240650-mRNA-1
chr2_2	exon	16000241	16000503	16000241	ID=Msa0240650-mRNA-1:exon:6581;Parent=Msa0240650-mRNA-1
chr2_2	exon	16001576	16001658	16001576	ID=Msa0240650-mRNA-1:exon:6580;Parent=Msa0240650-mRNA-1
chr2_2	exon	16002199	16002364	16002199	ID=Msa0240650-mRNA-1:exon:6579;Parent=Msa0240650-mRNA-1
chr2_2	exon	16003472	16003550	16003472	ID=Msa0240650-mRNA-1:exon:6578;Parent=Msa0240650-mRNA-1
chr2_2	exon	16004045	16004136	16004045	ID=Msa0240650-mRNA-1:exon:6577;Parent=Msa0240650-mRNA-1
chr2_2	exon	16004224	16004292	16004224	ID=Msa0240650-mRNA-1:exon:6576;Parent=Msa0240650-mRNA-1
chr2_2	exon	16004868	16004984	16004868	ID=Msa0240650-mRNA-1:exon:6575;Parent=Msa0240650-mRNA-1
chr2_2	exon	16005243	16005299	16005243	ID=Msa0240650-mRNA-1:exon:6574;Parent=Msa0240650-mRNA-1
chr2_2	exon	16005392	16005454	16005392	ID=Msa0240650-mRNA-1:exon:6573;Parent=Msa0240650-mRNA-1
chr2_2	exon	16005543	16005590	16005543	ID=Msa0240650-mRNA-1:exon:6572;Parent=Msa0240650-mRNA-1
chr2_2	exon	16005679	16005744	16005679	ID=Msa0240650-mRNA-1:exon:6571;Parent=Msa0240650-mRNA-1
chr2_2	exon	16005825	16005888	16005825	ID=Msa0240650-mRNA-1:exon:6570;Parent=Msa0240650-mRNA-1
chr2_2	exon	16006949	16007019	16006949	ID=Msa0240650-mRNA-1:exon:6569;Parent=Msa0240650-mRNA-1
chr2_2	exon	16007835	16007937	16007835	ID=Msa0240650-mRNA-1:exon:6568;Parent=Msa0240650-mRNA-1
chr2_2	exon	16008073	16008139	16008073	ID=Msa0240650-mRNA-1:exon:6567;Parent=Msa0240650-mRNA-1
chr2_2	exon	16008595	16008868	16008595	ID=Msa0240650-mRNA-1:exon:6566;Parent=Msa0240650-mRNA-1
chr2_2	five_prime_UTR	16008752	16008868	16008752	ID=Msa0240650-mRNA-1:five_prime_utr;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16008595	16008751	16008595	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16008073	16008139	16008073	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16007835	16007937	16007835	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16006949	16007019	16006949	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16005825	16005888	16005825	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16005679	16005744	16005679	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16005543	16005590	16005543	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16005392	16005454	16005392	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16005243	16005299	16005243	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16004868	16004984	16004868	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16004224	16004292	16004224	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16004045	16004136	16004045	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16003472	16003550	16003472	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16002199	16002364	16002199	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16001576	16001658	16001576	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	16000241	16000503	16000241	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	15999257	15999353	15999257	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	15998981	15999151	15998981	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	15998793	15998897	15998793	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	15997355	15997449	15997355	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	15997156	15997252	15997156	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	CDS	15996511	15996798	15996511	ID=Msa0240650-mRNA-1:cds;Parent=Msa0240650-mRNA-1
chr2_2	three_prime_UTR	15996417	15996510	15996417	ID=Msa0240650-mRNA-1:three_prime_utr;Parent=Msa0240650-mRNA-1

Gene Sequence

>Msa0240650

ATGGGAACTACCGTTGATGATTCCTGCGCCACCCAACTCATCGATGGTGACGGTGTTTTCAACCTCACCGGTCTCGATAATTTCATCAAAACTTCAAACATGGCTAATACTGGTCTTTCTTACGCTGTTGTTGCTATCATGGGTCCTCAATCTAGCGGGAAGAGTACTTTGTTGAATCATCTTTTCCATACTAGTTTCAGAGAGATGGATGCTTTTAGAGGAAGATCACAAACTACCAAGGGTATTTGGATAGCTAAGTGTACTGGAATTGAGCCGTGCACAATTGCTATGGATTTAGAGGGTACTGATGGAAGGGAGAGGGGCGAGGACGATACCGCTTTTGAGAAGCAGAGTGCTCTTTTTGCTTTGGCAGTATCAGATATTGTTCTGATAAACATGTGGTGTCATGATATTGGTCGTGAACAAGCAGCCAATAAACCTCTTTTAAAAACAGTTTTTCAGGTCATGATGCGTTTATTTAGTCCACGGAAGACAACATTGCTTTTTGTTATACGTGATAAGACAAAGACTCCGTTGGAAAATTTGGAGCCTATTCTAAGAGAAGATATTCAAAAGATTTGGGATGGAGTTCCAAAACCTCAAGCTCATTTACACACTCCTCTTAGTGAATTTTTTAATGTGGAAGTTACTGCTCTGTCAAGCTATGAGGACAAAGAGGAGAAATTCAAAGAGGAGGTTGCTCAATTACGACAACGTTTCTACCATTCTATAGCACCTGGAGGTCTTGCTGGTGATCGGCGTGGTGTTGTGCCCGCATCTGCTTTTTCTCTTAGTGCACAACACATATGGAAAGTAATGGTTGCAACTGTGCGTTGTGAAGAGATTGCTTATGAAAAGCTTAGTCAGCTGCGTTCTGATAAGGGTTGGCTGGAGTTGGAGGAAGTTGTTCAATCAGGTCCAGTACAAGGCTTTGGGGAAAAGTTGAGCTCTATTATTGATACCTACCTTTCTCTATATGATGAGGAGACGATCTACTTTGATGATGCTGTGAGAAATGCAAAACGAAAGCAATTGGAATCAAATGCATTGGATACAGTGTACCCTGCTTATTCAACAATGATAGGACACCTACGCTCTAAAGCTTTAGACGATTTTAAGACCAAGCTGGATCAATCACTAAACAATGGAGAAGGGTTTGCTTCATCTGTTCGCACGTGGACTCAGTCTATTATGCTCGAGTTTGAAAAAGGATCTGCTGACGCATCTGTAAGGCAGGCTAATTGGGGTTCTTCAAAAGTCCGAGATAAACTTCGTCGTGATATTGATTCACATGCTTTATCTAAACAACTGGCCAAGGCATTGGTTGCGCCTGTGGAGTCCCTCTTTGAAGAAGGAGGAAAGGACACCTGGCTTTCAATAAGAAAACTTCTTAAAAGTGAAACTGAAGCTGCTGTATCAGAATTTTCAGCTCATGTTGCTGGTTTTGAGCTGGAAGAGGAAACTGTTGAAAAAATGCAACAAAGCTTAAGAGACTACGCTAGAAAATTGGTGGAGAATAAAGCGCGAGAAGAAGCTGGAAAGGTTCTGATTCGCATGAAAGATAGGTTTTCTACAGTGTTTAATCATGACAATGATTCACTCCCTAGGGTTTGGACTGGGAAAGAAGATATCAGAGCTATTACAAGAGATGCCCGTTCTGCGTCACTGAAGCTTCTATCGGATATGGCTGCTATACGCTTGGATGAGAAGCCTGATCAAATTGAAAGAGTACTTGATTTGTCGCTTGTAAACAAAACCAGTGCTGCAACATCTTCCCAGTATACAGATAGAGAAGCTTCTGTGGATCCACTGGCTTCAAGCACATGGGAGGAGGTTTCTCCTGGAGATGTACTTATCTCTCCTGTACAGTGCAAGTCTTTGTGGAGACAATTCCAAGGTGAAACTGAGTATACAATTACACAAGCCATTGCAGCTCAGGAGGCCTACAAGCGGAATAACAATTGGCTACCTCCTGCATGGACAATTATGGCAATGGCCATATTTGGTTTCAATGAATTTATGATGCTTTTAAAAAATCCTCTCCTCATATTGGGTATATTTGTTGCCTATCTAATTGGGAAGGCCATATGGGTACAAATGGACGTAGGTGGAGAGTTTCGACATGGCGCTCTGCCTGGGATACTGTCCATTTCGTCAAAGGTTGTCCCTACAATTATGAACCTTCTTAAACGTCTTGCCGAAGAAGCTCAGGGGAACCCAGCACCTGAAAGAACAGAACAACATCATTCAGATTCTCAGATATTCAGAAATGAGGTGTCAAAACCTGACTCAGCATCAAGCTCAATCTCCAATACGGGTCTATCTAGTGTTGCCTCATCTGACGGTGATAGTGAATTCTCAACCACAAACTTGTCTCAAAGGCAAAGAACAAACGTTTCTGAAGCTGAATCATTATAA

Protein sequence

>Msa0240650

MGTTVDDSCATQLIDGDGVFNLTGLDNFIKTSNMANTGLSYAVVAIMGPQSSGKSTLLNHLFHTSFREMDAFRGRSQTTKGIWIAKCTGIEPCTIAMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPILREDIQKIWDGVPKPQAHLHTPLSEFFNVEVTALSSYEDKEEKFKEEVAQLRQRFYHSIAPGGLAGDRRGVVPASAFSLSAQHIWKVMVATVRCEEIAYEKLSQLRSDKGWLELEEVVQSGPVQGFGEKLSSIIDTYLSLYDEETIYFDDAVRNAKRKQLESNALDTVYPAYSTMIGHLRSKALDDFKTKLDQSLNNGEGFASSVRTWTQSIMLEFEKGSADASVRQANWGSSKVRDKLRRDIDSHALSKQLAKALVAPVESLFEEGGKDTWLSIRKLLKSETEAAVSEFSAHVAGFELEEETVEKMQQSLRDYARKLVENKAREEAGKVLIRMKDRFSTVFNHDNDSLPRVWTGKEDIRAITRDARSASLKLLSDMAAIRLDEKPDQIERVLDLSLVNKTSAATSSQYTDREASVDPLASSTWEEVSPGDVLISPVQCKSLWRQFQGETEYTITQAIAAQEAYKRNNNWLPPAWTIMAMAIFGFNEFMMLLKNPLLILGIFVAYLIGKAIWVQMDVGGEFRHGALPGILSISSKVVPTIMNLLKRLAEEAQGNPAPERTEQHHSDSQIFRNEVSKPDSASSSISNTGLSSVASSDGDSEFSTTNLSQRQRTNVSEAESL*