AlfalfaGEDB | Msa1215390

M. sativa cultivar zhongmu-4 / Msa1215390

KEGG: K20043|K20044
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF07651.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215390	sp\|Q9LHS0\|CAP10_ARATH	63.458	561	146	13	9	541	11	540	0.0	668

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215390	G7JFD3	93.583	561	4	2	1	545	1	545	0.0	1075

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037180	Msa1215390	0.806853	6.721449e-50	-8.615850e-47
Msa0092220	Msa1215390	0.806482	8.052240e-50	-8.615850e-47
Msa0143590	Msa1215390	0.809828	1.559893e-50	-8.615850e-47
Msa0177320	Msa1215390	0.809427	1.902920e-50	-8.615850e-47
Msa0390170	Msa1215390	0.805759	1.143119e-49	-8.615850e-47
Msa0416040	Msa1215390	0.800113	1.678427e-48	-8.615850e-47
Msa0614480	Msa1215390	0.819063	1.414059e-52	-8.615850e-47
Msa0631380	Msa1215390	0.812494	4.121314e-51	-8.615850e-47
Msa0695760	Msa1215390	0.812488	4.133618e-51	-8.615850e-47
Msa0721930	Msa1215390	0.802323	5.924041e-49	-8.615850e-47

Showing 1 to 10 of 28 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215390	MtrunA17_Chr4g0064391	93.583	561	4	2	1	545	1	545	0.0	1075
Msa1215390	MtrunA17_Chr8g0376161	48.980	588	228	14	4	545	2	563	9.37e-168	487
Msa1215390	MtrunA17_Chr4g0071851	46.141	583	260	15	4	539	2	577	4.01e-147	435
Msa1215390	MtrunA17_Chr2g0298681	63.158	323	108	4	4	323	2	316	8.68e-140	417
Msa1215390	MtrunA17_Chr2g0305391	38.918	573	245	15	9	520	1	529	4.35e-117	357
Msa1215390	MtrunA17_Chr4g0064081	28.099	605	341	16	7	530	4	595	1.36e-67	229
Msa1215390	MtrunA17_Chr8g0336601	29.783	554	309	16	5	493	2	540	2.86e-64	220
Msa1215390	MtrunA17_Chr2g0278681	30.662	574	307	14	7	499	4	567	8.44e-64	219
Msa1215390	MtrunA17_Chr3g0119631	33.758	314	189	4	9	316	5	305	1.81e-57	206
Msa1215390	MtrunA17_Chr3g0137621	46.053	152	79	2	5	155	2	151	3.83e-38	148

Showing 1 to 10 of 17 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215390	AT5G35200.1	63.458	561	146	13	9	541	11	540	0.0	668
Msa1215390	AT5G35200.2	63.458	561	146	13	9	541	11	540	0.0	668
Msa1215390	AT4G25940.1	50.379	528	213	9	4	483	2	528	4.75e-158	464
Msa1215390	AT2G01600.1	46.734	597	236	17	4	545	2	571	9.96e-154	452
Msa1215390	AT1G14910.1	47.653	554	228	15	4	519	2	531	1.85e-148	442
Msa1215390	AT5G57200.1	63.975	322	110	2	4	325	2	317	5.16e-143	425
Msa1215390	AT1G14910.2	46.931	554	227	16	4	519	2	526	5.64e-143	428
Msa1215390	AT1G03050.1	31.497	581	302	17	7	505	4	570	1.74e-71	240
Msa1215390	AT4G02650.1	27.715	617	351	15	7	542	4	606	1.18e-59	208
Msa1215390	AT4G32285.1	28.325	579	317	11	8	492	4	578	1.25e-58	206

Showing 1 to 10 of 19 entries

Previous1 2Next

Find 187 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACTTGGAGCTCTTA+AGG	0.379703	8_1:-76628977	Msa1215390:CDS
AAAATCACGATCTATAAGGG+TGG	0.637634	8_1:+76629483	None:intergenic
AAAATGCTAGCTATAATCCA+TGG	0.481886	8_1:-76624401	Msa1215390:CDS
AAACATGGATACTCCACATT+TGG	0.384395	8_1:-76624077	Msa1215390:three_prime_UTR
AAAGATGACTCGAGTCCAAA+TGG	0.496856	8_1:-76627685	Msa1215390:intron
AAATCGAACCTAAAATCTTG+AGG	0.646849	8_1:-76629782	Msa1215390:five_prime_UTR
AAATGCTAGCTATAATCCAT+GGG	0.626464	8_1:-76624400	Msa1215390:CDS
AACAGGCATACCTGAGCCAT+AGG	0.555181	8_1:+76624158	None:intergenic
AACAGTTTGAGAAAAGCACT+TGG	0.582322	8_1:-76628988	Msa1215390:CDS
AACCCCACCCTCCACTTATA+GGG	0.241438	8_1:-76629862	Msa1215390:five_prime_UTR

Showing 1 to 10 of 187 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTAAATAGAACCCCTATAAG+TGG	+	chr8_1:76623761-76623780	None:intergenic	30.0%
AAATCGAACCTAAAATCTTG+AGG	-	chr8_1:76623827-76623846	Msa1215390:three_prime_UTR	30.0%
CTTGGAGTCAAGATTAAATT+TGG	+	chr8_1:76623872-76623891	None:intergenic	30.0%
CAAATTTAATCTTGACTCCA+AGG	-	chr8_1:76623870-76623889	Msa1215390:three_prime_UTR	30.0%
CATTTCCACATAAACTTTGT+TGG	-	chr8_1:76624711-76624730	Msa1215390:intron	30.0%
AACAACCAACAAAGTTTATG+TGG	+	chr8_1:76624719-76624738	None:intergenic	30.0%
CAAAGAAGGAATCAAACATT+TGG	+	chr8_1:76624915-76624934	None:intergenic	30.0%
CAAATGTTTGATTCCTTCTT+TGG	-	chr8_1:76624913-76624932	Msa1215390:intron	30.0%
GTTAAGATTAACTCCAAAGA+AGG	+	chr8_1:76624929-76624948	None:intergenic	30.0%
GAAGAGAACACATAAATACT+TGG	+	chr8_1:76625161-76625180	None:intergenic	30.0%

Showing 1 to 10 of 385 entries

Previous1 2 3 4 5…39Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	76623696	76629935	76623696	ID=Msa1215390;Name=Msa1215390
chr8_1	mRNA	76623696	76629935	76623696	ID=Msa1215390-mRNA-1;Parent=Msa1215390;Name=Msa1215390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=538\|0.81\|0.88\|1\|0.93\|0.94\|17\|429\|545
chr8_1	exon	76623696	76624487	76623696	ID=Msa1215390-mRNA-1:exon:26349;Parent=Msa1215390-mRNA-1
chr8_1	exon	76625005	76625069	76625005	ID=Msa1215390-mRNA-1:exon:26348;Parent=Msa1215390-mRNA-1
chr8_1	exon	76625700	76625772	76625700	ID=Msa1215390-mRNA-1:exon:26347;Parent=Msa1215390-mRNA-1
chr8_1	exon	76625897	76626052	76625897	ID=Msa1215390-mRNA-1:exon:26346;Parent=Msa1215390-mRNA-1
chr8_1	exon	76626373	76626450	76626373	ID=Msa1215390-mRNA-1:exon:26345;Parent=Msa1215390-mRNA-1
chr8_1	exon	76626550	76626630	76626550	ID=Msa1215390-mRNA-1:exon:26344;Parent=Msa1215390-mRNA-1
chr8_1	exon	76626717	76626782	76626717	ID=Msa1215390-mRNA-1:exon:26343;Parent=Msa1215390-mRNA-1
chr8_1	exon	76626859	76626924	76626859	ID=Msa1215390-mRNA-1:exon:26342;Parent=Msa1215390-mRNA-1
chr8_1	exon	76627012	76627062	76627012	ID=Msa1215390-mRNA-1:exon:26341;Parent=Msa1215390-mRNA-1
chr8_1	exon	76627162	76627245	76627162	ID=Msa1215390-mRNA-1:exon:26340;Parent=Msa1215390-mRNA-1
chr8_1	exon	76627355	76627402	76627355	ID=Msa1215390-mRNA-1:exon:26339;Parent=Msa1215390-mRNA-1
chr8_1	exon	76627495	76627595	76627495	ID=Msa1215390-mRNA-1:exon:26338;Parent=Msa1215390-mRNA-1
chr8_1	exon	76627686	76627827	76627686	ID=Msa1215390-mRNA-1:exon:26337;Parent=Msa1215390-mRNA-1
chr8_1	exon	76628348	76628445	76628348	ID=Msa1215390-mRNA-1:exon:26336;Parent=Msa1215390-mRNA-1
chr8_1	exon	76628769	76628838	76628769	ID=Msa1215390-mRNA-1:exon:26335;Parent=Msa1215390-mRNA-1
chr8_1	exon	76628933	76629054	76628933	ID=Msa1215390-mRNA-1:exon:26334;Parent=Msa1215390-mRNA-1
chr8_1	exon	76629424	76629935	76629424	ID=Msa1215390-mRNA-1:exon:26333;Parent=Msa1215390-mRNA-1
chr8_1	five_prime_UTR	76629424	76629935	76629424	ID=Msa1215390-mRNA-1:five_prime_utr;Parent=Msa1215390-mRNA-1
chr8_1	five_prime_UTR	76629029	76629054	76629029	ID=Msa1215390-mRNA-1:five_prime_utr;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76628933	76629028	76628933	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76628769	76628838	76628769	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76628348	76628445	76628348	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76627686	76627827	76627686	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76627495	76627595	76627495	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76627355	76627402	76627355	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76627162	76627245	76627162	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76627012	76627062	76627012	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76626859	76626924	76626859	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76626717	76626782	76626717	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76626550	76626630	76626550	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76626373	76626450	76626373	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76625897	76626052	76625897	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76625700	76625772	76625700	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76625005	76625069	76625005	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	CDS	76624125	76624487	76624125	ID=Msa1215390-mRNA-1:cds;Parent=Msa1215390-mRNA-1
chr8_1	three_prime_UTR	76623696	76624124	76623696	ID=Msa1215390-mRNA-1:three_prime_utr;Parent=Msa1215390-mRNA-1

Gene Sequence

>Msa1215390

ATGTCTGGTGGAACGCAGAACAGTTTGAGAAAAGCACTTGGAGCTCTTAAGGACACCACTACTGTCTCATTGGCTAAGGTCAACAGTGGTTACAAGGAGTTGGACATTGCTATCGTTCGAGCAACGAATCATGTTGAACGCCCAGCTAAGGAGAAACACATTCGAGCTATATTTTCAGCGATCTCAGCTACAAGACCTAGGGCTGACGTTGCCTATTGCATCCATGCTCTCGCTAGGCGATTATCAAAGACACATAACTGGGCTGTTGCTTTGAAAACTTTAATTGTCATTCACCGTGCTCTGAGGGAGGTGGATCCCACATTTCATGAAGAACTCATTAATTATGGGAGAAGTAGAAGTCATATGCTCAACATGGCTCATTTTAAAGATGACTCGAGTCCAAATGCATGGGATTATTCTGCATGGGTTCGCAGTTATGCATTATTTTTGGAGGAAAGGCTGGAATGTTTTCGTGTGTTGAAGTATGACATTGAGGCTGATCGTCCTAATTTAAATTTTTCACAAGCAGTTGAATTATGTGAATGTTATCCGATGAGGACCAAAGATTTGGATACTGCCGAATTGCTAGAGCAGTTGCCAGCTTTACAACAGCTTCTCTATCGAGTTATTGGTTGCCAGCCACAAGGAGCAGCTGTAAATAATTTTGTGATTCAGTTAGCACTCCAATTGGTTGCTTCGGAAAGCATTAAAATTTATCAAGCCATTAGTGATGGAACTGTTAATATGGTTGATAAGTTTTTTGAGATGCAACGGGAAGATGCCTTGAAAGCTCTTGATATATACAGAAGGGTTGGGCTGCAGGCTGAGAGACTGTCAGAGTTTTATGAAATATGCCGTAATCTTGATATTGGACGTGGAGAGAAGTTCATCAAAGTTGAGCAGCCCCCATCATCGTTTATGCAAGCCATGGAAGACTATGTCAAAGATGCTCCCCAGGGAGCAATAGTTCGAAAGGATCAGGCCGTTGACAACAAAATTGCTGCTCCAAAAGAAGTTTTGGCTATTGAATACAATAAGGAACCAGAAGTGAAGGAGGAACGTGCACCCTCGCCCCCTCCACCGTCTGAACCTGTGAAAGTGGAAACACCACCAGTACAACCACCACCTGAACTTTTGAATATGGATGATCCTGTTCCAGCTGCTGCAGAATTGGAAGAGAAGAATGCCTTGGCTTTAGCCATCGTTCCCGCTGATCAACAACCTTCTGCTGTTTCAAATCATGCAAATGGAACCGCTGGGTGGGAATTGGCTCTTGCTGGAGGTTTGGACATGCTTACATTAGACAGCCTATATGATGATGCACTGAGAAGAAACAACCAAAATGCTAGCTATAATCCATGGGAGCAAGCACCGGCTGGAGGCATGATGCAACCGACAATGCACGATCCATTTTTTGCCTCTAATACAATGGCTGCTCCACACTCTGTTCAAATGGCAGCTATGTCAAACCAGCAACAGTCTTTCATGTATCAGCAGCAGCAGCAACAAATGATGATGATGGCCCCTCAACAACAATCTGCAAATCCTTTTGGAAATCCTCAATATGGAGCCACAGTTCACCCCTATGGCTCAGGTATGCCTGTTCAATCATACAATCCTTACACAGGCCTCATCTAA

Protein sequence

>Msa1215390

MSGGTQNSLRKALGALKDTTTVSLAKVNSGYKELDIAIVRATNHVERPAKEKHIRAIFSAISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFHEELINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIEADRPNLNFSQAVELCECYPMRTKDLDTAELLEQLPALQQLLYRVIGCQPQGAAVNNFVIQLALQLVASESIKIYQAISDGTVNMVDKFFEMQREDALKALDIYRRVGLQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFMQAMEDYVKDAPQGAIVRKDQAVDNKIAAPKEVLAIEYNKEPEVKEERAPSPPPPSEPVKVETPPVQPPPELLNMDDPVPAAAELEEKNALALAIVPADQQPSAVSNHANGTAGWELALAGGLDMLTLDSLYDDALRRNNQNASYNPWEQAPAGGMMQPTMHDPFFASNTMAAPHSVQMAAMSNQQQSFMYQQQQQQMMMMAPQQQSANPFGNPQYGATVHPYGSGMPVQSYNPYTGLI*